Query 003857
Match_columns 791
No_of_seqs 451 out of 3466
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 13:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00993 3a0901s04IAP86 chlor 100.0 5E-215 1E-219 1801.7 62.6 694 82-782 40-756 (763)
2 PF11886 DUF3406: Domain of un 100.0 2E-130 3E-135 1004.1 27.5 273 507-779 1-273 (273)
3 cd01853 Toc34_like Toc34-like 100.0 3.2E-37 6.8E-42 324.5 21.2 241 144-385 9-249 (249)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 1.2E-35 2.5E-40 318.8 18.8 252 164-428 36-295 (313)
5 PF04548 AIG1: AIG1 family; I 99.9 1.5E-21 3.2E-26 200.7 14.4 157 167-336 1-161 (212)
6 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 1.7E-20 3.6E-25 189.8 15.2 155 167-334 1-158 (196)
7 COG0486 ThdF Predicted GTPase 99.8 1E-19 2.2E-24 202.5 18.7 218 88-331 150-377 (454)
8 COG1160 Predicted GTPases [Gen 99.7 2.8E-17 6E-22 182.8 7.6 199 93-300 79-304 (444)
9 PF02421 FeoB_N: Ferrous iron 99.7 3.3E-16 7.1E-21 154.4 10.4 121 167-301 1-121 (156)
10 COG1159 Era GTPase [General fu 99.6 3.1E-15 6.6E-20 159.1 15.4 126 166-302 6-131 (298)
11 COG1160 Predicted GTPases [Gen 99.6 2.1E-15 4.5E-20 168.0 11.8 122 167-299 4-126 (444)
12 PF01926 MMR_HSR1: 50S ribosom 99.6 6.2E-15 1.3E-19 136.4 12.5 116 168-294 1-116 (116)
13 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.6E-14 5.6E-19 162.4 20.1 182 88-299 140-324 (442)
14 PRK05291 trmE tRNA modificatio 99.6 2.3E-14 5E-19 163.2 18.6 186 88-300 148-336 (449)
15 KOG1547 Septin CDC10 and relat 99.6 2.3E-15 5.1E-20 154.6 8.7 174 164-363 44-268 (336)
16 cd01850 CDC_Septin CDC/Septin. 99.6 5.1E-15 1.1E-19 158.6 10.3 126 164-300 2-158 (276)
17 PF00735 Septin: Septin; Inte 99.6 1.3E-15 2.9E-20 163.5 5.8 127 165-302 3-159 (281)
18 KOG1191 Mitochondrial GTPase [ 99.6 4E-14 8.8E-19 157.9 16.9 188 96-300 208-404 (531)
19 COG1084 Predicted GTPase [Gene 99.5 2.3E-13 4.9E-18 146.2 19.6 127 165-300 167-295 (346)
20 COG5019 CDC3 Septin family pro 99.5 3.1E-14 6.7E-19 154.8 12.6 178 164-363 21-247 (373)
21 COG3596 Predicted GTPase [Gene 99.5 4.8E-14 1E-18 148.4 12.2 153 165-327 38-195 (296)
22 TIGR03156 GTP_HflX GTP-binding 99.5 4.1E-13 8.9E-18 148.6 18.5 159 122-298 154-314 (351)
23 TIGR00436 era GTP-binding prot 99.5 1.5E-13 3.3E-18 146.3 13.4 119 168-298 2-120 (270)
24 COG0218 Predicted GTPase [Gene 99.5 3.9E-13 8.4E-18 136.4 14.3 127 165-301 23-151 (200)
25 KOG2655 Septin family protein 99.5 1.9E-13 4.2E-18 149.6 12.3 128 164-302 19-175 (366)
26 cd04163 Era Era subfamily. Er 99.5 1.3E-12 2.9E-17 124.2 14.9 122 166-298 3-124 (168)
27 PRK00089 era GTPase Era; Revie 99.4 7.7E-13 1.7E-17 141.9 14.3 122 166-298 5-126 (292)
28 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.4E-12 3E-17 124.0 14.2 121 167-300 2-122 (157)
29 TIGR03598 GTPase_YsxC ribosome 99.4 2.2E-12 4.8E-17 128.4 14.8 126 164-299 16-143 (179)
30 cd01894 EngA1 EngA1 subfamily. 99.4 1.5E-12 3.3E-17 123.9 12.6 119 170-299 1-119 (157)
31 TIGR03594 GTPase_EngA ribosome 99.4 2.2E-12 4.7E-17 145.4 14.1 122 168-300 1-122 (429)
32 cd01898 Obg Obg subfamily. Th 99.4 1.6E-12 3.5E-17 126.3 11.0 125 168-299 2-128 (170)
33 cd01895 EngA2 EngA2 subfamily. 99.4 4.9E-12 1.1E-16 121.8 14.1 124 166-299 2-127 (174)
34 KOG1490 GTP-binding protein CR 99.4 3.4E-12 7.3E-17 142.6 14.5 130 166-303 168-299 (620)
35 PRK11058 GTPase HflX; Provisio 99.4 8.9E-12 1.9E-16 141.2 16.2 122 167-298 198-322 (426)
36 PRK15494 era GTPase Era; Provi 99.3 8.3E-12 1.8E-16 137.6 14.2 123 165-298 51-173 (339)
37 cd01878 HflX HflX subfamily. 99.3 2.7E-11 5.9E-16 122.6 16.4 124 167-299 42-167 (204)
38 PRK00093 GTP-binding protein D 99.3 1.1E-11 2.4E-16 140.1 15.1 125 165-298 172-297 (435)
39 PRK00093 GTP-binding protein D 99.3 1.3E-11 2.9E-16 139.5 14.2 121 167-298 2-122 (435)
40 cd01881 Obg_like The Obg-like 99.3 3.1E-12 6.7E-17 124.6 7.7 122 171-299 1-134 (176)
41 PRK12298 obgE GTPase CgtA; Rev 99.3 8.6E-12 1.9E-16 139.9 12.1 124 168-298 161-288 (390)
42 cd04104 p47_IIGP_like p47 (47- 99.3 1.5E-11 3.3E-16 125.0 12.8 119 166-301 1-123 (197)
43 KOG1423 Ras-like GTPase ERA [C 99.3 1.2E-11 2.6E-16 131.6 12.4 129 163-300 69-200 (379)
44 cd01879 FeoB Ferrous iron tran 99.3 1.1E-11 2.5E-16 118.5 11.3 115 171-299 1-115 (158)
45 cd01897 NOG NOG1 is a nucleola 99.3 1.9E-11 4.2E-16 118.7 12.9 124 168-299 2-127 (168)
46 TIGR03594 GTPase_EngA ribosome 99.3 2.1E-11 4.6E-16 137.5 14.5 126 164-298 170-296 (429)
47 PRK03003 GTP-binding protein D 99.3 1.8E-11 3.8E-16 140.6 14.0 126 165-298 210-335 (472)
48 PRK03003 GTP-binding protein D 99.3 2.3E-11 4.9E-16 139.7 14.9 121 167-298 39-159 (472)
49 COG2262 HflX GTPases [General 99.3 6.8E-11 1.5E-15 130.6 17.6 155 167-330 193-356 (411)
50 PF05049 IIGP: Interferon-indu 99.3 2.1E-12 4.6E-17 143.0 5.2 222 166-407 35-267 (376)
51 PRK12299 obgE GTPase CgtA; Rev 99.3 2.3E-11 4.9E-16 134.0 12.8 125 167-299 159-285 (335)
52 PRK00454 engB GTP-binding prot 99.3 9.5E-11 2.1E-15 117.1 14.7 125 165-299 23-149 (196)
53 cd00880 Era_like Era (E. coli 99.2 5.8E-11 1.3E-15 111.0 11.3 118 171-300 1-119 (163)
54 cd04171 SelB SelB subfamily. 99.2 1.3E-10 2.9E-15 111.6 13.9 114 167-298 1-117 (164)
55 PRK09518 bifunctional cytidyla 99.2 7.4E-11 1.6E-15 141.8 14.8 121 167-298 276-396 (712)
56 PRK04213 GTP-binding protein; 99.2 1E-10 2.2E-15 118.0 13.5 124 165-298 8-143 (201)
57 PRK09518 bifunctional cytidyla 99.2 6.9E-11 1.5E-15 142.0 13.8 126 165-298 449-574 (712)
58 PRK12297 obgE GTPase CgtA; Rev 99.2 7E-11 1.5E-15 133.7 12.5 123 168-297 160-286 (424)
59 TIGR02729 Obg_CgtA Obg family 99.2 9.6E-11 2.1E-15 128.8 12.8 125 167-298 158-286 (329)
60 PRK12296 obgE GTPase CgtA; Rev 99.2 1.2E-10 2.7E-15 133.6 13.8 125 167-298 160-297 (500)
61 PRK09554 feoB ferrous iron tra 99.2 2.2E-10 4.7E-15 138.3 15.5 122 166-299 3-126 (772)
62 cd01861 Rab6 Rab6 subfamily. 99.2 2.7E-10 5.8E-15 109.7 12.7 116 167-298 1-118 (161)
63 cd01876 YihA_EngB The YihA (En 99.2 3.3E-10 7.1E-15 108.2 13.0 121 169-299 2-124 (170)
64 cd00154 Rab Rab family. Rab G 99.2 2.3E-10 5E-15 108.0 11.2 114 167-298 1-118 (159)
65 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 3.6E-10 7.9E-15 109.4 12.7 111 168-298 2-115 (168)
66 cd04119 RJL RJL (RabJ-Like) su 99.1 3.2E-10 6.8E-15 109.2 11.9 117 167-298 1-123 (168)
67 COG0370 FeoB Fe2+ transport sy 99.1 2.3E-10 5E-15 133.1 12.9 123 167-303 4-126 (653)
68 cd00881 GTP_translation_factor 99.1 5.8E-10 1.3E-14 109.6 13.6 113 168-299 1-128 (189)
69 cd01866 Rab2 Rab2 subfamily. 99.1 1E-09 2.2E-14 107.7 14.1 118 166-299 4-123 (168)
70 PF00350 Dynamin_N: Dynamin fa 99.1 9E-11 1.9E-15 114.7 6.6 112 169-295 1-168 (168)
71 cd01864 Rab19 Rab19 subfamily. 99.1 9.1E-10 2E-14 107.2 13.6 118 166-299 3-122 (165)
72 cd04160 Arfrp1 Arfrp1 subfamil 99.1 4.1E-10 9E-15 109.3 11.1 115 168-298 1-120 (167)
73 cd01860 Rab5_related Rab5-rela 99.1 6.1E-10 1.3E-14 107.5 11.9 115 167-298 2-119 (163)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.1 7.1E-10 1.5E-14 106.9 12.3 116 167-298 3-120 (164)
75 smart00175 RAB Rab subfamily o 99.1 1E-09 2.3E-14 105.6 13.3 117 167-299 1-119 (164)
76 cd04166 CysN_ATPS CysN_ATPS su 99.1 3.6E-10 7.9E-15 115.8 10.4 113 168-298 1-143 (208)
77 PRK12727 flagellar biosynthesi 99.1 1.6E-09 3.4E-14 124.6 16.3 107 82-188 256-372 (559)
78 TIGR00231 small_GTP small GTP- 99.1 2.1E-09 4.4E-14 100.6 14.1 117 167-299 2-122 (161)
79 cd01896 DRG The developmentall 99.1 1.2E-09 2.6E-14 114.5 13.7 86 168-260 2-87 (233)
80 cd01868 Rab11_like Rab11-like. 99.1 1.4E-09 3E-14 105.5 13.1 116 167-298 4-121 (165)
81 cd04113 Rab4 Rab4 subfamily. 99.1 1.3E-09 2.9E-14 105.2 12.9 117 167-299 1-119 (161)
82 cd01863 Rab18 Rab18 subfamily. 99.1 9.8E-10 2.1E-14 106.0 11.8 118 167-298 1-119 (161)
83 cd01891 TypA_BipA TypA (tyrosi 99.1 2.6E-09 5.5E-14 107.8 15.3 113 167-298 3-130 (194)
84 cd04140 ARHI_like ARHI subfami 99.1 8.2E-10 1.8E-14 107.8 11.1 118 167-299 2-122 (165)
85 cd04154 Arl2 Arl2 subfamily. 99.1 2.2E-09 4.7E-14 105.8 13.8 114 165-298 13-128 (173)
86 smart00178 SAR Sar1p-like memb 99.1 1.9E-09 4.2E-14 108.0 13.6 113 166-298 17-131 (184)
87 cd04138 H_N_K_Ras_like H-Ras/N 99.1 1.6E-09 3.4E-14 103.8 12.2 116 167-299 2-120 (162)
88 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 2.2E-09 4.8E-14 104.4 13.4 117 167-299 3-121 (166)
89 cd04136 Rap_like Rap-like subf 99.1 1.1E-09 2.5E-14 105.4 11.3 117 167-299 2-120 (163)
90 cd04157 Arl6 Arl6 subfamily. 99.0 1.1E-09 2.4E-14 105.3 11.1 116 168-298 1-117 (162)
91 cd01884 EF_Tu EF-Tu subfamily. 99.0 3E-09 6.5E-14 108.7 14.7 113 167-298 3-131 (195)
92 cd01867 Rab8_Rab10_Rab13_like 99.0 1.7E-09 3.7E-14 105.8 12.4 117 166-299 3-122 (167)
93 cd04142 RRP22 RRP22 subfamily. 99.0 1.7E-09 3.6E-14 110.4 12.5 125 167-298 1-129 (198)
94 PLN03118 Rab family protein; P 99.0 1.4E-09 3E-14 111.3 11.8 118 165-299 13-134 (211)
95 cd04123 Rab21 Rab21 subfamily. 99.0 2.3E-09 5.1E-14 102.5 12.7 115 167-298 1-118 (162)
96 cd01865 Rab3 Rab3 subfamily. 99.0 1.8E-09 3.9E-14 105.4 11.9 116 167-299 2-120 (165)
97 smart00053 DYNc Dynamin, GTPas 99.0 3.6E-09 7.7E-14 111.6 14.8 125 167-299 27-206 (240)
98 cd04159 Arl10_like Arl10-like 99.0 2.1E-09 4.7E-14 101.6 11.5 111 169-298 2-114 (159)
99 cd04101 RabL4 RabL4 (Rab-like4 99.0 4.2E-09 9.2E-14 101.9 13.6 117 167-299 1-121 (164)
100 cd00876 Ras Ras family. The R 99.0 2E-09 4.3E-14 102.8 11.2 116 168-299 1-118 (160)
101 cd01889 SelB_euk SelB subfamil 99.0 2.7E-09 5.9E-14 107.4 12.2 113 167-298 1-133 (192)
102 cd00878 Arf_Arl Arf (ADP-ribos 99.0 2.5E-09 5.3E-14 103.1 11.4 112 168-299 1-114 (158)
103 cd04106 Rab23_lke Rab23-like s 99.0 3.8E-09 8.3E-14 101.8 12.7 115 167-299 1-120 (162)
104 smart00173 RAS Ras subfamily o 99.0 1.7E-09 3.7E-14 104.6 10.2 117 167-299 1-119 (164)
105 cd04156 ARLTS1 ARLTS1 subfamil 99.0 4.2E-09 9.1E-14 101.5 12.8 111 168-298 1-114 (160)
106 cd04112 Rab26 Rab26 subfamily. 99.0 3.6E-09 7.9E-14 106.4 12.7 117 167-299 1-120 (191)
107 PF00009 GTP_EFTU: Elongation 99.0 2.1E-09 4.6E-14 108.0 10.7 114 166-298 3-135 (188)
108 cd01862 Rab7 Rab7 subfamily. 99.0 6.1E-09 1.3E-13 101.2 13.5 119 167-299 1-123 (172)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 3.5E-09 7.5E-14 105.9 12.1 116 166-298 3-122 (183)
110 cd04124 RabL2 RabL2 subfamily. 99.0 2.7E-09 5.9E-14 104.0 11.0 114 167-298 1-117 (161)
111 cd01890 LepA LepA subfamily. 99.0 3.4E-09 7.4E-14 104.2 11.7 112 168-298 2-132 (179)
112 cd04155 Arl3 Arl3 subfamily. 99.0 4.8E-09 1E-13 102.6 12.7 113 166-298 14-128 (173)
113 cd04151 Arl1 Arl1 subfamily. 99.0 4.8E-09 1E-13 101.5 12.5 111 168-298 1-113 (158)
114 cd00879 Sar1 Sar1 subfamily. 99.0 3.8E-09 8.2E-14 105.3 11.9 113 166-298 19-133 (190)
115 cd04114 Rab30 Rab30 subfamily. 99.0 7.6E-09 1.6E-13 100.6 13.7 118 166-299 7-126 (169)
116 cd04175 Rap1 Rap1 subgroup. T 99.0 3.8E-09 8.2E-14 102.6 11.5 116 167-298 2-119 (164)
117 cd04149 Arf6 Arf6 subfamily. 99.0 8.2E-09 1.8E-13 102.0 13.8 113 166-298 9-123 (168)
118 PRK14721 flhF flagellar biosyn 99.0 1E-08 2.2E-13 115.9 15.9 196 89-299 102-340 (420)
119 cd00157 Rho Rho (Ras homology) 99.0 1.6E-09 3.4E-14 105.3 8.1 117 167-301 1-120 (171)
120 cd04125 RabA_like RabA-like su 99.0 4.5E-09 9.8E-14 105.1 11.5 116 167-298 1-118 (188)
121 cd04109 Rab28 Rab28 subfamily. 99.0 7.1E-09 1.5E-13 106.6 13.2 117 167-298 1-122 (215)
122 cd04161 Arl2l1_Arl13_like Arl2 99.0 5.2E-09 1.1E-13 103.1 11.7 111 168-298 1-113 (167)
123 cd04144 Ras2 Ras2 subfamily. 99.0 3.9E-09 8.5E-14 106.1 11.0 116 168-298 1-119 (190)
124 cd04139 RalA_RalB RalA/RalB su 98.9 5.2E-09 1.1E-13 100.6 11.0 117 167-299 1-119 (164)
125 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.9 7E-09 1.5E-13 102.7 12.2 112 167-298 16-129 (174)
126 cd04122 Rab14 Rab14 subfamily. 98.9 6.5E-09 1.4E-13 101.4 11.8 116 167-299 3-121 (166)
127 CHL00071 tufA elongation facto 98.9 1.1E-08 2.3E-13 115.8 15.0 116 164-298 10-141 (409)
128 PF08477 Miro: Miro-like prote 98.9 1.8E-09 3.9E-14 99.4 7.1 116 168-296 1-119 (119)
129 cd01886 EF-G Elongation factor 98.9 6.4E-09 1.4E-13 111.5 12.4 112 168-298 1-129 (270)
130 PRK12317 elongation factor 1-a 98.9 8.2E-09 1.8E-13 117.0 13.9 117 165-298 5-152 (425)
131 cd04118 Rab24 Rab24 subfamily. 98.9 1.2E-08 2.5E-13 102.3 13.3 116 167-299 1-119 (193)
132 cd04115 Rab33B_Rab33A Rab33B/R 98.9 1.4E-08 3.1E-13 99.7 13.6 119 167-299 3-123 (170)
133 cd04158 ARD1 ARD1 subfamily. 98.9 6.1E-09 1.3E-13 102.5 10.9 111 168-298 1-113 (169)
134 TIGR00437 feoB ferrous iron tr 98.9 6.1E-09 1.3E-13 122.8 12.8 113 173-299 1-113 (591)
135 PRK14722 flhF flagellar biosyn 98.9 7.5E-09 1.6E-13 115.4 12.8 202 89-299 44-295 (374)
136 cd04176 Rap2 Rap2 subgroup. T 98.9 4.6E-09 1E-13 101.7 9.8 116 167-298 2-119 (163)
137 cd04146 RERG_RasL11_like RERG/ 98.9 3.5E-09 7.6E-14 103.0 8.9 117 168-298 1-119 (165)
138 cd01893 Miro1 Miro1 subfamily. 98.9 8.5E-09 1.8E-13 100.9 11.3 113 167-299 1-117 (166)
139 cd01858 NGP_1 NGP-1. Autoanti 98.9 2.2E-09 4.7E-14 105.1 7.0 56 166-224 102-157 (157)
140 PRK06995 flhF flagellar biosyn 98.9 3.1E-08 6.7E-13 113.7 17.3 193 89-299 166-405 (484)
141 cd00877 Ran Ran (Ras-related n 98.9 6.5E-09 1.4E-13 102.3 9.9 113 167-298 1-117 (166)
142 cd04116 Rab9 Rab9 subfamily. 98.9 1.5E-08 3.2E-13 99.0 12.2 120 165-298 4-127 (170)
143 TIGR02528 EutP ethanolamine ut 98.9 1.1E-08 2.4E-13 97.1 11.1 100 168-298 2-101 (142)
144 PTZ00133 ADP-ribosylation fact 98.9 2.2E-08 4.7E-13 100.5 13.6 112 167-298 18-131 (182)
145 TIGR01425 SRP54_euk signal rec 98.9 3.5E-08 7.6E-13 111.7 16.8 121 165-300 99-254 (429)
146 PRK09866 hypothetical protein; 98.9 3.3E-08 7.1E-13 115.2 16.8 73 214-298 230-302 (741)
147 cd04127 Rab27A Rab27a subfamil 98.9 2E-08 4.4E-13 98.9 13.2 118 166-299 4-134 (180)
148 cd04150 Arf1_5_like Arf1-Arf5- 98.9 1.9E-08 4.2E-13 98.3 12.8 112 167-298 1-114 (159)
149 cd04177 RSR1 RSR1 subgroup. R 98.9 8.7E-09 1.9E-13 100.9 10.4 117 167-299 2-120 (168)
150 cd04105 SR_beta Signal recogni 98.9 1.8E-08 4E-13 103.2 13.1 116 168-299 2-123 (203)
151 PLN03110 Rab GTPase; Provision 98.9 2.2E-08 4.8E-13 103.3 13.7 118 165-298 11-130 (216)
152 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 1.8E-08 3.9E-13 102.2 12.6 117 167-298 1-123 (201)
153 cd04147 Ras_dva Ras-dva subfam 98.9 1.2E-08 2.6E-13 103.4 11.2 116 168-299 1-118 (198)
154 KOG3859 Septins (P-loop GTPase 98.9 3.8E-09 8.2E-14 111.3 7.5 131 164-300 40-191 (406)
155 PRK15467 ethanolamine utilizat 98.9 7.5E-09 1.6E-13 101.8 9.3 102 168-298 3-104 (158)
156 cd04137 RheB Rheb (Ras Homolog 98.9 1.2E-08 2.5E-13 100.8 10.7 117 167-299 2-120 (180)
157 smart00177 ARF ARF-like small 98.9 3E-08 6.5E-13 98.5 13.6 113 166-298 13-127 (175)
158 PTZ00369 Ras-like protein; Pro 98.9 1.2E-08 2.6E-13 102.5 10.6 117 166-298 5-123 (189)
159 cd04110 Rab35 Rab35 subfamily. 98.9 4.2E-08 9.1E-13 99.6 14.5 115 166-298 6-123 (199)
160 PRK14723 flhF flagellar biosyn 98.9 3.5E-08 7.6E-13 118.0 15.9 121 166-299 185-337 (767)
161 cd04170 EF-G_bact Elongation f 98.9 1.7E-08 3.7E-13 107.4 12.1 112 168-298 1-129 (268)
162 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 2.6E-08 5.7E-13 98.8 12.6 116 167-298 3-120 (172)
163 PLN03108 Rab family protein; P 98.8 3.6E-08 7.8E-13 101.2 13.7 118 165-298 5-124 (210)
164 cd04132 Rho4_like Rho4-like su 98.8 1.9E-08 4.1E-13 100.0 11.3 114 167-299 1-119 (187)
165 cd00882 Ras_like_GTPase Ras-li 98.8 1.6E-08 3.5E-13 92.9 10.0 115 171-300 1-117 (157)
166 COG1419 FlhF Flagellar GTP-bin 98.8 3.2E-09 6.9E-14 118.1 5.6 119 166-299 203-352 (407)
167 cd04108 Rab36_Rab34 Rab34/Rab3 98.8 2.5E-08 5.4E-13 98.8 11.2 115 168-298 2-119 (170)
168 TIGR02836 spore_IV_A stage IV 98.8 1.4E-08 3E-13 113.3 10.2 126 166-298 17-193 (492)
169 cd04148 RGK RGK subfamily. Th 98.8 2E-08 4.3E-13 104.2 10.8 117 167-299 1-120 (221)
170 cd04117 Rab15 Rab15 subfamily. 98.8 5.2E-08 1.1E-12 95.2 13.1 115 167-298 1-118 (161)
171 cd04111 Rab39 Rab39 subfamily. 98.8 3.3E-08 7.2E-13 101.7 12.3 118 167-299 3-123 (211)
172 PLN00223 ADP-ribosylation fact 98.8 7.1E-08 1.5E-12 96.8 14.3 112 167-298 18-131 (181)
173 cd04168 TetM_like Tet(M)-like 98.8 3E-08 6.6E-13 104.3 12.1 112 168-298 1-129 (237)
174 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 3.7E-08 8.1E-13 96.8 11.9 111 169-298 2-112 (164)
175 cd04178 Nucleostemin_like Nucl 98.8 7.1E-09 1.5E-13 104.0 6.8 58 164-224 115-172 (172)
176 PLN03127 Elongation factor Tu; 98.8 4.1E-08 8.8E-13 112.3 13.2 114 166-298 61-190 (447)
177 cd04169 RF3 RF3 subfamily. Pe 98.8 5.8E-08 1.3E-12 103.9 13.5 113 167-298 3-136 (267)
178 cd04143 Rhes_like Rhes_like su 98.8 3.9E-08 8.5E-13 104.0 12.0 118 167-299 1-127 (247)
179 cd04120 Rab12 Rab12 subfamily. 98.8 6.2E-08 1.4E-12 99.5 13.0 115 167-298 1-118 (202)
180 smart00174 RHO Rho (Ras homolo 98.8 1.7E-08 3.7E-13 98.8 8.5 112 169-299 1-116 (174)
181 PRK12735 elongation factor Tu; 98.8 5E-08 1.1E-12 109.9 13.3 118 162-298 8-141 (396)
182 PLN03071 GTP-binding nuclear p 98.8 3.8E-08 8.2E-13 101.9 10.9 117 164-298 11-130 (219)
183 cd01900 YchF YchF subfamily. 98.8 1.9E-08 4.1E-13 108.1 8.8 85 169-260 1-102 (274)
184 cd01874 Cdc42 Cdc42 subfamily. 98.8 4.9E-08 1.1E-12 97.2 11.2 113 167-298 2-118 (175)
185 cd01888 eIF2_gamma eIF2-gamma 98.8 6.7E-08 1.5E-12 98.8 12.4 115 167-298 1-150 (203)
186 PTZ00258 GTP-binding protein; 98.8 3E-08 6.5E-13 111.2 10.7 90 164-260 19-125 (390)
187 PRK05506 bifunctional sulfate 98.8 7.3E-08 1.6E-12 114.7 14.5 116 165-298 23-170 (632)
188 PRK12736 elongation factor Tu; 98.8 1.2E-07 2.6E-12 106.8 15.4 117 163-298 9-141 (394)
189 cd04126 Rab20 Rab20 subfamily. 98.7 4.8E-08 1E-12 101.8 11.1 113 167-299 1-114 (220)
190 PF10662 PduV-EutP: Ethanolami 98.7 3.5E-08 7.6E-13 96.2 9.3 100 168-298 3-102 (143)
191 PRK05703 flhF flagellar biosyn 98.7 4.9E-08 1.1E-12 110.9 12.0 199 86-299 130-371 (424)
192 cd04165 GTPBP1_like GTPBP1-lik 98.7 8.2E-08 1.8E-12 100.2 12.7 114 168-298 1-151 (224)
193 TIGR00485 EF-Tu translation el 98.7 1.4E-07 3E-12 106.2 15.3 118 163-299 9-142 (394)
194 PRK09601 GTP-binding protein Y 98.7 3.5E-08 7.7E-13 109.6 10.3 87 167-260 3-106 (364)
195 cd01883 EF1_alpha Eukaryotic e 98.7 8.8E-08 1.9E-12 99.1 12.7 115 168-299 1-151 (219)
196 PLN03126 Elongation factor Tu; 98.7 1.6E-07 3.5E-12 108.3 15.8 117 164-299 79-211 (478)
197 cd01892 Miro2 Miro2 subfamily. 98.7 8.9E-08 1.9E-12 94.6 11.8 116 165-298 3-121 (169)
198 TIGR00475 selB selenocysteine- 98.7 8.1E-08 1.8E-12 113.2 13.5 113 167-298 1-116 (581)
199 PRK00049 elongation factor Tu; 98.7 1E-07 2.2E-12 107.5 13.7 117 163-298 9-141 (396)
200 KOG1489 Predicted GTP-binding 98.7 2.2E-08 4.8E-13 107.6 7.8 125 167-298 197-325 (366)
201 cd04135 Tc10 TC10 subfamily. 98.7 4.4E-08 9.6E-13 95.8 9.4 113 167-298 1-117 (174)
202 cd04121 Rab40 Rab40 subfamily. 98.7 1.9E-07 4.2E-12 94.8 14.0 116 165-298 5-123 (189)
203 TIGR00484 EF-G translation elo 98.7 6.8E-08 1.5E-12 116.0 12.5 113 167-298 11-140 (689)
204 PRK00007 elongation factor G; 98.7 9E-08 2E-12 115.1 13.5 114 167-299 11-141 (693)
205 PRK05124 cysN sulfate adenylyl 98.7 1.6E-07 3.5E-12 108.2 14.7 116 165-298 26-173 (474)
206 cd01870 RhoA_like RhoA-like su 98.7 5.8E-08 1.3E-12 95.1 9.6 114 167-299 2-119 (175)
207 cd04167 Snu114p Snu114p subfam 98.7 1.3E-07 2.7E-12 97.3 12.4 113 168-299 2-137 (213)
208 PF00448 SRP54: SRP54-type pro 98.7 5.7E-09 1.2E-13 106.9 2.5 118 167-299 2-154 (196)
209 PRK11889 flhF flagellar biosyn 98.7 8.7E-08 1.9E-12 107.1 11.8 119 166-299 241-391 (436)
210 PRK12739 elongation factor G; 98.7 1E-07 2.2E-12 114.6 13.1 114 166-298 8-138 (691)
211 COG1163 DRG Predicted GTPase [ 98.7 5.6E-08 1.2E-12 105.0 9.6 89 166-261 63-151 (365)
212 PRK05306 infB translation init 98.7 1E-07 2.2E-12 115.2 13.0 116 163-298 287-402 (787)
213 cd04130 Wrch_1 Wrch-1 subfamil 98.7 8.8E-08 1.9E-12 94.4 10.3 115 167-299 1-118 (173)
214 cd04134 Rho3 Rho3 subfamily. 98.7 7.4E-08 1.6E-12 96.9 9.7 113 168-299 2-118 (189)
215 PRK14974 cell division protein 98.7 1.4E-07 3E-12 104.2 12.3 120 165-299 139-293 (336)
216 COG0536 Obg Predicted GTPase [ 98.7 9.3E-08 2E-12 104.0 10.6 125 168-299 161-289 (369)
217 TIGR02034 CysN sulfate adenyly 98.7 1.7E-07 3.7E-12 106.0 13.3 114 167-298 1-146 (406)
218 cd01885 EF2 EF2 (for archaea a 98.7 2.4E-07 5.3E-12 96.7 13.2 112 168-298 2-138 (222)
219 cd01849 YlqF_related_GTPase Yl 98.7 3.8E-08 8.3E-13 96.2 6.6 57 165-224 99-155 (155)
220 COG0552 FtsY Signal recognitio 98.6 7E-08 1.5E-12 105.0 8.8 127 164-299 137-298 (340)
221 cd04131 Rnd Rnd subfamily. Th 98.6 1.5E-07 3.3E-12 94.3 10.6 113 167-298 2-118 (178)
222 cd01871 Rac1_like Rac1-like su 98.6 2.3E-07 5.1E-12 92.3 11.9 113 167-298 2-118 (174)
223 TIGR00487 IF-2 translation ini 98.6 2E-07 4.3E-12 109.9 13.1 115 164-298 85-200 (587)
224 PRK09563 rbgA GTPase YlqF; Rev 98.6 7.4E-08 1.6E-12 104.0 8.6 62 165-229 120-181 (287)
225 CHL00189 infB translation init 98.6 2.4E-07 5.2E-12 111.3 13.2 115 164-298 242-360 (742)
226 TIGR00483 EF-1_alpha translati 98.6 4.2E-07 9.2E-12 103.2 14.5 117 165-298 6-154 (426)
227 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 5.9E-08 1.3E-12 93.5 6.3 55 168-225 85-139 (141)
228 cd01851 GBP Guanylate-binding 98.6 7.4E-07 1.6E-11 93.1 15.0 87 167-258 8-99 (224)
229 PRK12723 flagellar biosynthesi 98.6 2E-07 4.4E-12 104.7 11.4 120 165-299 173-326 (388)
230 PLN00023 GTP-binding protein; 98.6 5.7E-07 1.2E-11 98.6 14.6 124 163-299 18-165 (334)
231 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 2.7E-07 5.9E-12 93.1 11.2 115 165-298 4-122 (182)
232 cd04128 Spg1 Spg1p. Spg1p (se 98.6 3.9E-07 8.5E-12 91.6 12.2 114 167-298 1-117 (182)
233 cd01855 YqeH YqeH. YqeH is an 98.6 3.8E-08 8.3E-13 99.1 4.9 55 167-224 128-190 (190)
234 PRK10512 selenocysteinyl-tRNA- 98.6 4.7E-07 1E-11 107.4 14.7 114 167-298 1-117 (614)
235 PRK12288 GTPase RsgA; Reviewed 98.6 1.2E-07 2.7E-12 105.1 8.5 60 168-230 207-273 (347)
236 TIGR00064 ftsY signal recognit 98.6 4.6E-07 1E-11 97.4 12.7 120 165-299 71-231 (272)
237 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 4E-07 8.7E-12 95.1 11.6 113 167-298 2-118 (222)
238 TIGR03596 GTPase_YlqF ribosome 98.6 1.3E-07 2.9E-12 101.5 8.2 62 165-229 117-178 (276)
239 TIGR01394 TypA_BipA GTP-bindin 98.6 4.4E-07 9.4E-12 107.3 13.1 112 168-298 3-129 (594)
240 COG1100 GTPase SAR1 and relate 98.6 6.8E-07 1.5E-11 91.0 12.7 117 167-299 6-125 (219)
241 PRK12726 flagellar biosynthesi 98.6 2.8E-07 6.1E-12 102.7 10.6 120 165-299 205-356 (407)
242 PF00071 Ras: Ras family; Int 98.6 2.8E-07 6E-12 89.0 9.3 115 168-299 1-118 (162)
243 COG1161 Predicted GTPases [Gen 98.5 8E-08 1.7E-12 105.6 6.2 61 166-229 132-192 (322)
244 cd01882 BMS1 Bms1. Bms1 is an 98.5 5.9E-07 1.3E-11 93.7 12.3 109 164-299 37-147 (225)
245 TIGR00157 ribosome small subun 98.5 1.3E-07 2.8E-12 100.0 7.3 60 167-230 121-187 (245)
246 cd04102 RabL3 RabL3 (Rab-like3 98.5 7E-07 1.5E-11 91.9 12.1 118 167-299 1-143 (202)
247 TIGR00491 aIF-2 translation in 98.5 5.5E-07 1.2E-11 106.2 12.6 113 166-299 4-135 (590)
248 cd01856 YlqF YlqF. Proteins o 98.5 1.7E-07 3.7E-12 93.2 7.0 58 165-225 114-171 (171)
249 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.5 6.9E-07 1.5E-11 93.9 11.9 116 165-298 12-130 (232)
250 PTZ00141 elongation factor 1- 98.5 2E-06 4.3E-11 98.6 16.4 117 165-298 6-158 (446)
251 cd01875 RhoG RhoG subfamily. 98.5 6.3E-07 1.4E-11 90.5 11.0 114 166-298 3-120 (191)
252 PRK12289 GTPase RsgA; Reviewed 98.5 1.1E-07 2.4E-12 105.6 5.9 59 168-229 174-239 (352)
253 PF00025 Arf: ADP-ribosylation 98.5 6E-07 1.3E-11 89.7 10.4 115 164-298 12-128 (175)
254 cd04133 Rop_like Rop subfamily 98.5 6.9E-07 1.5E-11 89.7 10.6 114 167-299 2-119 (176)
255 KOG0781 Signal recognition par 98.5 7.8E-07 1.7E-11 99.9 11.9 124 165-298 377-543 (587)
256 PF03193 DUF258: Protein of un 98.5 4.2E-08 9.1E-13 97.6 1.8 61 167-230 36-103 (161)
257 cd01899 Ygr210 Ygr210 subfamil 98.5 5E-07 1.1E-11 99.2 10.2 87 169-262 1-111 (318)
258 PRK09602 translation-associate 98.5 5.1E-07 1.1E-11 101.9 10.4 88 167-261 2-113 (396)
259 cd04129 Rho2 Rho2 subfamily. 98.5 4.9E-07 1.1E-11 90.7 9.1 113 167-298 2-118 (187)
260 PTZ00132 GTP-binding nuclear p 98.5 1.1E-06 2.5E-11 90.0 11.9 118 165-298 8-126 (215)
261 COG0541 Ffh Signal recognition 98.5 2.5E-07 5.4E-12 103.6 7.4 122 164-300 98-254 (451)
262 TIGR03597 GTPase_YqeH ribosome 98.5 3.2E-07 7E-12 102.2 7.9 58 167-227 155-217 (360)
263 TIGR00503 prfC peptide chain r 98.5 1.5E-06 3.2E-11 101.5 13.6 114 166-298 11-145 (527)
264 PRK10218 GTP-binding protein; 98.4 1.3E-06 2.9E-11 103.3 13.3 113 167-298 6-133 (607)
265 TIGR01393 lepA GTP-binding pro 98.4 9.6E-07 2.1E-11 104.5 12.0 113 167-298 4-135 (595)
266 KOG0410 Predicted GTP binding 98.4 1.4E-06 3.1E-11 94.1 11.6 154 166-328 178-339 (410)
267 COG1162 Predicted GTPases [Gen 98.4 4.6E-07 9.9E-12 97.9 7.6 59 168-229 166-231 (301)
268 PRK10416 signal recognition pa 98.4 3.2E-06 6.9E-11 92.9 14.2 120 165-299 113-273 (318)
269 PRK13351 elongation factor G; 98.4 1.5E-06 3.3E-11 104.5 12.8 114 166-298 8-138 (687)
270 PRK04004 translation initiatio 98.4 1.8E-06 3.9E-11 102.0 12.8 114 165-298 5-136 (586)
271 PF09439 SRPRB: Signal recogni 98.4 3.7E-07 8E-12 92.5 6.0 115 167-299 4-126 (181)
272 cd04103 Centaurin_gamma Centau 98.4 1.8E-06 3.8E-11 84.9 10.5 110 167-298 1-112 (158)
273 PTZ00416 elongation factor 2; 98.4 1.9E-06 4E-11 105.8 12.3 113 167-298 20-157 (836)
274 KOG2486 Predicted GTPase [Gene 98.4 1.9E-06 4.2E-11 91.6 10.6 127 163-299 133-262 (320)
275 TIGR03680 eif2g_arch translati 98.4 2.2E-06 4.8E-11 97.0 12.0 118 165-299 3-148 (406)
276 PRK00741 prfC peptide chain re 98.4 2.9E-06 6.3E-11 99.1 13.1 114 166-298 10-144 (526)
277 PRK12724 flagellar biosynthesi 98.3 2.3E-06 5E-11 96.7 11.4 119 166-299 223-373 (432)
278 smart00176 RAN Ran (Ras-relate 98.3 2E-06 4.3E-11 88.3 9.8 109 172-298 1-112 (200)
279 PRK00771 signal recognition pa 98.3 2.1E-06 4.5E-11 98.0 10.0 121 164-299 93-246 (437)
280 PRK00098 GTPase RsgA; Reviewed 98.3 1.6E-06 3.6E-11 94.2 8.3 58 167-227 165-229 (298)
281 PRK04000 translation initiatio 98.3 5E-06 1.1E-10 94.4 12.3 119 164-299 7-153 (411)
282 TIGR00490 aEF-2 translation el 98.3 4.5E-06 9.7E-11 101.0 12.5 114 167-299 20-152 (720)
283 cd01859 MJ1464 MJ1464. This f 98.3 1.5E-06 3.3E-11 84.6 6.8 56 166-224 101-156 (156)
284 PLN00116 translation elongatio 98.3 5.8E-06 1.3E-10 101.6 13.4 114 167-299 20-164 (843)
285 PRK13796 GTPase YqeH; Provisio 98.3 8.4E-07 1.8E-11 99.2 5.6 58 167-227 161-223 (365)
286 PRK05433 GTP-binding protein L 98.3 4.9E-06 1.1E-10 98.6 12.4 113 167-298 8-139 (600)
287 PRK10867 signal recognition pa 98.3 4.1E-06 8.9E-11 95.5 11.2 120 165-299 99-254 (433)
288 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2E-06 4.3E-11 93.1 8.2 58 167-227 162-226 (287)
289 KOG1424 Predicted GTP-binding 98.3 7.4E-07 1.6E-11 101.0 4.9 61 166-229 314-374 (562)
290 PRK07560 elongation factor EF- 98.2 1E-05 2.2E-10 98.2 13.7 114 167-299 21-153 (731)
291 PRK12740 elongation factor G; 98.2 5.8E-06 1.3E-10 99.2 11.4 108 172-298 1-125 (668)
292 KOG0073 GTP-binding ADP-ribosy 98.2 1.3E-05 2.7E-10 79.5 11.6 113 166-298 16-130 (185)
293 PF04670 Gtr1_RagA: Gtr1/RagA 98.2 9.2E-06 2E-10 85.6 11.5 123 168-299 1-125 (232)
294 cd01873 RhoBTB RhoBTB subfamil 98.2 6.5E-06 1.4E-10 84.0 9.7 112 167-298 3-133 (195)
295 TIGR03499 FlhF flagellar biosy 98.2 5.7E-06 1.2E-10 89.4 9.7 102 88-189 106-217 (282)
296 KOG0084 GTPase Rab1/YPT1, smal 98.2 1.5E-05 3.2E-10 81.2 11.7 118 164-299 7-128 (205)
297 TIGR00959 ffh signal recogniti 98.2 9.5E-06 2.1E-10 92.5 11.2 120 165-299 98-253 (428)
298 PRK06731 flhF flagellar biosyn 98.2 1.4E-06 3.1E-11 93.5 4.3 118 167-299 76-225 (270)
299 KOG0078 GTP-binding protein SE 98.1 2.7E-05 5.8E-10 80.0 12.3 119 163-299 9-131 (207)
300 COG4917 EutP Ethanolamine util 98.1 4.8E-06 1E-10 79.2 5.9 102 168-299 3-104 (148)
301 PLN00043 elongation factor 1-a 98.1 6.8E-05 1.5E-09 86.2 16.5 118 165-298 6-158 (447)
302 KOG1954 Endocytosis/signaling 98.1 1.6E-05 3.5E-10 87.2 10.7 131 162-299 54-225 (532)
303 PRK13768 GTPase; Provisional 98.1 5.4E-06 1.2E-10 88.2 6.9 82 214-301 97-178 (253)
304 KOG0780 Signal recognition par 98.1 1.6E-05 3.5E-10 87.8 9.8 125 162-301 97-256 (483)
305 PRK09435 membrane ATPase/prote 98.0 4.7E-05 1E-09 84.2 13.4 23 165-187 55-77 (332)
306 COG0012 Predicted GTPase, prob 98.0 1.6E-05 3.4E-10 88.1 9.0 91 166-263 2-110 (372)
307 KOG0447 Dynamin-like GTP bindi 98.0 0.00017 3.7E-09 82.2 16.9 134 160-299 302-493 (980)
308 KOG2485 Conserved ATP/GTP bind 98.0 1.2E-05 2.6E-10 86.9 6.8 66 165-230 142-212 (335)
309 KOG0448 Mitofusin 1 GTPase, in 98.0 2.1E-05 4.6E-10 91.9 9.3 116 167-299 110-275 (749)
310 TIGR00092 GTP-binding protein 98.0 2.4E-05 5.2E-10 87.4 9.3 88 167-260 3-107 (368)
311 KOG0395 Ras-related GTPase [Ge 98.0 3E-05 6.5E-10 79.7 9.2 118 166-299 3-122 (196)
312 TIGR03348 VI_IcmF type VI secr 98.0 6.4E-05 1.4E-09 95.6 14.1 125 167-298 112-256 (1169)
313 KOG0092 GTPase Rab5/YPT51 and 97.9 1.8E-05 3.8E-10 80.3 7.0 116 166-299 5-124 (200)
314 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.9 5.3E-05 1.1E-09 77.2 10.1 116 167-300 23-143 (221)
315 KOG0098 GTPase Rab2, small G p 97.9 9.6E-05 2.1E-09 74.8 10.9 118 166-301 6-127 (216)
316 KOG0087 GTPase Rab11/YPT3, sma 97.9 5.2E-05 1.1E-09 78.0 8.9 122 162-299 10-133 (222)
317 KOG1707 Predicted Ras related/ 97.9 4.3E-05 9.4E-10 88.1 9.1 120 165-299 8-129 (625)
318 COG2229 Predicted GTPase [Gene 97.8 0.00016 3.5E-09 73.1 11.7 115 166-299 10-135 (187)
319 KOG0095 GTPase Rab30, small G 97.8 0.00032 6.9E-09 68.6 12.8 120 163-300 4-127 (213)
320 COG5256 TEF1 Translation elong 97.8 0.00017 3.7E-09 80.7 12.3 118 165-299 6-159 (428)
321 KOG0080 GTPase Rab18, small G 97.8 0.0001 2.2E-09 72.9 9.3 117 165-298 10-130 (209)
322 KOG1145 Mitochondrial translat 97.8 0.00025 5.4E-09 81.5 13.0 118 161-298 148-266 (683)
323 TIGR00750 lao LAO/AO transport 97.8 0.00015 3.2E-09 79.1 10.9 24 165-188 33-56 (300)
324 KOG0394 Ras-related GTPase [Ge 97.7 9.7E-05 2.1E-09 74.6 8.4 114 165-298 8-131 (210)
325 KOG1491 Predicted GTP-binding 97.7 9E-05 2E-09 81.0 8.6 91 165-262 19-126 (391)
326 PTZ00327 eukaryotic translatio 97.7 0.0002 4.4E-09 82.5 11.6 117 165-298 33-184 (460)
327 KOG0079 GTP-binding protein H- 97.7 0.00011 2.4E-09 71.8 7.7 113 167-298 9-125 (198)
328 KOG1532 GTPase XAB1, interacts 97.7 8.3E-05 1.8E-09 79.2 7.4 99 214-328 116-216 (366)
329 KOG2484 GTPase [General functi 97.7 2.4E-05 5.3E-10 86.8 3.2 65 162-229 248-312 (435)
330 KOG3883 Ras family small GTPas 97.7 0.00028 6.1E-09 69.4 9.8 123 165-301 8-134 (198)
331 COG3523 IcmF Type VI protein s 97.6 0.00015 3.4E-09 90.6 9.5 127 167-299 126-270 (1188)
332 cd03115 SRP The signal recogni 97.6 8.6E-05 1.9E-09 73.7 5.7 73 212-299 81-153 (173)
333 COG0532 InfB Translation initi 97.6 0.00046 1E-08 79.5 12.2 114 165-298 4-120 (509)
334 KOG0090 Signal recognition par 97.6 0.00056 1.2E-08 70.8 10.8 115 167-300 39-160 (238)
335 cd03112 CobW_like The function 97.5 0.00033 7.1E-09 69.3 8.9 22 168-189 2-23 (158)
336 COG0480 FusA Translation elong 97.5 0.00085 1.8E-08 80.8 13.1 115 166-299 10-142 (697)
337 PF03308 ArgK: ArgK protein; 97.5 0.0001 2.2E-09 78.5 4.8 23 165-187 28-50 (266)
338 COG1703 ArgK Putative periplas 97.5 0.0007 1.5E-08 73.3 10.6 27 161-187 46-72 (323)
339 KOG0093 GTPase Rab3, small G p 97.5 0.00057 1.2E-08 66.9 8.9 117 166-299 21-140 (193)
340 PF03029 ATP_bind_1: Conserved 97.4 5.8E-05 1.3E-09 79.8 2.3 75 215-299 92-170 (238)
341 KOG1486 GTP-binding protein DR 97.4 0.0002 4.4E-09 75.5 5.6 89 166-263 62-150 (364)
342 PRK01889 GTPase RsgA; Reviewed 97.4 0.00022 4.7E-09 79.7 5.5 60 167-229 196-262 (356)
343 cd03114 ArgK-like The function 97.3 0.00086 1.9E-08 65.8 8.4 20 168-187 1-20 (148)
344 KOG2423 Nucleolar GTPase [Gene 97.3 0.0001 2.2E-09 81.6 2.1 62 164-228 305-366 (572)
345 KOG0458 Elongation factor 1 al 97.3 0.0025 5.5E-08 74.0 12.8 118 165-299 176-329 (603)
346 KOG0075 GTP-binding ADP-ribosy 97.1 0.0017 3.7E-08 63.7 8.2 113 167-298 21-135 (186)
347 COG1217 TypA Predicted membran 97.1 0.0028 6E-08 72.0 10.4 112 167-298 6-133 (603)
348 COG5192 BMS1 GTP-binding prote 97.0 0.0047 1E-07 71.2 11.4 113 161-299 64-177 (1077)
349 KOG0462 Elongation factor-type 96.9 0.0039 8.4E-08 72.1 10.0 116 165-299 59-191 (650)
350 KOG3886 GTP-binding protein [S 96.9 0.0019 4E-08 67.7 6.8 126 167-301 5-132 (295)
351 PRK14845 translation initiatio 96.9 0.0081 1.8E-07 75.3 13.2 103 177-299 472-592 (1049)
352 COG3276 SelB Selenocysteine-sp 96.8 0.0079 1.7E-07 68.2 11.0 114 168-299 2-117 (447)
353 KOG0077 Vesicle coat complex C 96.7 0.0064 1.4E-07 60.9 8.5 112 167-299 21-135 (193)
354 KOG0086 GTPase Rab4, small G p 96.7 0.0077 1.7E-07 59.5 8.8 116 165-299 8-128 (214)
355 KOG0461 Selenocysteine-specifi 96.6 0.026 5.7E-07 62.2 13.2 114 166-300 7-137 (522)
356 PF00004 AAA: ATPase family as 96.6 0.0078 1.7E-07 55.8 7.6 103 169-296 1-111 (132)
357 COG2895 CysN GTPases - Sulfate 96.5 0.016 3.5E-07 64.2 10.8 117 165-299 5-153 (431)
358 KOG0091 GTPase Rab39, small G 96.5 0.0062 1.4E-07 60.8 6.9 119 165-299 7-130 (213)
359 KOG0070 GTP-binding ADP-ribosy 96.5 0.0077 1.7E-07 61.1 7.5 113 166-298 17-131 (181)
360 KOG0074 GTP-binding ADP-ribosy 96.4 0.013 2.7E-07 57.4 7.8 115 165-299 16-133 (185)
361 KOG0393 Ras-related small GTPa 96.2 0.0097 2.1E-07 61.4 6.3 115 166-298 4-122 (198)
362 KOG0071 GTP-binding ADP-ribosy 96.1 0.058 1.3E-06 52.9 10.7 114 166-299 17-132 (180)
363 COG4108 PrfC Peptide chain rel 96.1 0.025 5.3E-07 64.2 9.3 111 167-298 13-146 (528)
364 cd03222 ABC_RNaseL_inhibitor T 96.0 0.052 1.1E-06 55.0 10.6 24 167-190 26-49 (177)
365 cd03110 Fer4_NifH_child This p 95.8 0.041 9E-07 54.8 8.9 66 212-298 91-156 (179)
366 cd00071 GMPK Guanosine monopho 95.8 0.006 1.3E-07 59.0 2.9 55 169-224 2-56 (137)
367 PF02492 cobW: CobW/HypB/UreG, 95.8 0.016 3.4E-07 58.4 5.9 20 168-187 2-21 (178)
368 KOG1534 Putative transcription 95.8 0.0084 1.8E-07 62.3 3.7 124 167-299 4-178 (273)
369 TIGR03263 guanyl_kin guanylate 95.7 0.0048 1E-07 61.3 1.9 55 168-224 3-57 (180)
370 KOG0088 GTPase Rab21, small G 95.7 0.0059 1.3E-07 60.6 2.4 118 162-298 9-131 (218)
371 KOG0076 GTP-binding ADP-ribosy 95.7 0.025 5.4E-07 57.2 6.7 117 167-298 18-139 (197)
372 KOG0468 U5 snRNP-specific prot 95.6 0.024 5.2E-07 66.8 7.1 112 167-298 129-262 (971)
373 PF02263 GBP: Guanylate-bindin 95.5 0.036 7.8E-07 59.4 7.7 61 167-227 22-87 (260)
374 KOG2749 mRNA cleavage and poly 95.5 0.11 2.4E-06 57.8 11.3 62 217-298 215-276 (415)
375 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.089 1.9E-06 45.5 8.8 46 169-227 2-47 (99)
376 PRK14737 gmk guanylate kinase; 95.5 0.0091 2E-07 60.9 2.7 54 166-221 4-57 (186)
377 KOG0097 GTPase Rab14, small G 95.4 0.096 2.1E-06 51.2 9.3 115 166-299 11-130 (215)
378 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.082 1.8E-06 51.4 9.1 24 167-190 27-50 (144)
379 KOG4252 GTP-binding protein [S 95.4 0.0061 1.3E-07 61.6 1.1 118 165-300 19-139 (246)
380 COG1341 Predicted GTPase or GT 95.4 0.038 8.3E-07 62.3 7.4 22 166-187 73-94 (398)
381 COG3640 CooC CO dehydrogenase 95.4 0.031 6.7E-07 59.1 6.2 43 250-298 155-198 (255)
382 KOG1144 Translation initiation 95.3 0.098 2.1E-06 62.6 10.8 114 165-298 474-605 (1064)
383 COG0194 Gmk Guanylate kinase [ 95.3 0.0074 1.6E-07 61.6 1.5 52 167-221 5-56 (191)
384 PTZ00099 rab6; Provisional 95.3 0.079 1.7E-06 53.3 8.8 70 214-298 29-98 (176)
385 PF00005 ABC_tran: ABC transpo 95.3 0.013 2.9E-07 55.3 3.1 25 167-191 12-36 (137)
386 KOG0446 Vacuolar sorting prote 95.3 0.0085 1.8E-07 72.1 2.1 126 167-299 30-213 (657)
387 COG0481 LepA Membrane GTPase L 95.3 0.064 1.4E-06 61.5 8.8 115 167-300 10-143 (603)
388 KOG1487 GTP-binding protein DR 95.2 0.021 4.5E-07 61.0 4.4 104 168-281 61-164 (358)
389 PRK14738 gmk guanylate kinase; 95.2 0.015 3.3E-07 59.9 3.5 58 163-222 10-67 (206)
390 PRK11537 putative GTP-binding 95.1 0.11 2.4E-06 57.5 10.1 23 167-189 5-27 (318)
391 COG3840 ThiQ ABC-type thiamine 95.1 0.013 2.8E-07 59.9 2.5 24 168-191 27-50 (231)
392 PF13207 AAA_17: AAA domain; P 95.1 0.016 3.5E-07 53.6 2.9 22 168-189 1-22 (121)
393 KOG0467 Translation elongation 95.1 0.11 2.4E-06 62.4 10.2 112 167-298 10-137 (887)
394 COG5258 GTPBP1 GTPase [General 94.9 0.031 6.7E-07 62.5 5.0 119 163-300 114-270 (527)
395 COG1116 TauB ABC-type nitrate/ 94.9 0.015 3.3E-07 61.8 2.5 25 168-192 31-55 (248)
396 PRK08472 fliI flagellum-specif 94.9 0.023 5E-07 65.3 3.9 88 167-263 158-258 (434)
397 KOG0081 GTPase Rab27, small G 94.8 0.05 1.1E-06 54.2 5.4 21 167-187 10-30 (219)
398 PRK00300 gmk guanylate kinase; 94.8 0.022 4.7E-07 58.0 3.1 24 167-190 6-29 (205)
399 PF05673 DUF815: Protein of un 94.8 0.08 1.7E-06 56.5 7.3 23 167-189 53-75 (249)
400 KOG4181 Uncharacterized conser 94.7 0.42 9E-06 53.2 12.8 24 167-190 189-212 (491)
401 cd03230 ABC_DR_subfamily_A Thi 94.7 0.14 3.1E-06 51.0 8.7 25 167-191 27-51 (173)
402 cd02032 Bchl_like This family 94.6 0.16 3.4E-06 54.2 9.3 19 168-186 2-20 (267)
403 cd00009 AAA The AAA+ (ATPases 94.6 0.19 4.2E-06 46.1 8.7 24 167-190 20-43 (151)
404 COG1136 SalX ABC-type antimicr 94.5 0.022 4.7E-07 60.1 2.5 25 168-192 33-57 (226)
405 cd01130 VirB11-like_ATPase Typ 94.4 0.025 5.3E-07 57.3 2.6 24 167-190 26-49 (186)
406 PF13555 AAA_29: P-loop contai 94.4 0.03 6.5E-07 47.5 2.6 19 168-186 25-43 (62)
407 cd03243 ABC_MutS_homologs The 94.3 0.22 4.7E-06 51.0 9.3 22 167-188 30-51 (202)
408 KOG0464 Elongation factor G [T 94.3 0.037 7.9E-07 62.2 3.6 114 167-299 38-168 (753)
409 COG1618 Predicted nucleotide k 94.2 0.27 5.9E-06 49.5 9.3 23 166-188 5-27 (179)
410 cd03225 ABC_cobalt_CbiO_domain 94.2 0.03 6.5E-07 57.2 2.7 24 167-190 28-51 (211)
411 COG5257 GCD11 Translation init 94.2 0.11 2.3E-06 57.3 6.9 119 165-300 9-155 (415)
412 COG0410 LivF ABC-type branched 94.2 0.04 8.6E-07 58.1 3.6 26 167-192 30-55 (237)
413 cd03261 ABC_Org_Solvent_Resist 94.2 0.032 6.9E-07 58.2 2.8 23 168-190 28-50 (235)
414 KOG1143 Predicted translation 94.1 0.13 2.8E-06 57.4 7.4 120 166-302 167-320 (591)
415 PF13671 AAA_33: AAA domain; P 94.1 0.034 7.5E-07 52.7 2.7 22 168-189 1-22 (143)
416 COG0523 Putative GTPases (G3E 94.1 0.14 3E-06 56.9 7.7 119 168-300 3-160 (323)
417 cd02117 NifH_like This family 94.0 0.14 3E-06 52.7 7.2 19 168-186 2-20 (212)
418 KOG0054 Multidrug resistance-a 94.0 0.15 3.2E-06 65.8 8.7 21 168-188 1168-1188(1381)
419 smart00382 AAA ATPases associa 94.0 0.038 8.3E-07 50.2 2.7 24 167-190 3-26 (148)
420 cd03265 ABC_DrrA DrrA is the A 94.0 0.036 7.8E-07 57.2 2.8 24 167-190 27-50 (220)
421 cd02038 FleN-like FleN is a me 94.0 0.31 6.7E-06 47.0 9.0 98 170-296 4-108 (139)
422 COG0050 TufB GTPases - transla 93.9 0.46 1E-05 51.9 10.9 116 165-299 11-142 (394)
423 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.9 0.038 8.1E-07 56.8 2.8 23 168-190 32-54 (218)
424 TIGR02673 FtsE cell division A 93.9 0.038 8.1E-07 56.7 2.8 24 167-190 29-52 (214)
425 TIGR00960 3a0501s02 Type II (G 93.9 0.039 8.4E-07 56.7 2.7 24 167-190 30-53 (216)
426 TIGR03608 L_ocin_972_ABC putat 93.8 0.04 8.7E-07 56.1 2.7 23 168-190 26-48 (206)
427 TIGR01166 cbiO cobalt transpor 93.8 0.04 8.8E-07 55.5 2.8 23 168-190 20-42 (190)
428 KOG0083 GTPase Rab26/Rab37, sm 93.8 0.042 9E-07 53.3 2.6 113 170-299 1-117 (192)
429 cd02036 MinD Bacterial cell di 93.8 0.34 7.4E-06 47.5 9.3 108 170-298 4-127 (179)
430 KOG0743 AAA+-type ATPase [Post 93.8 0.14 3.1E-06 58.6 7.2 22 169-190 238-259 (457)
431 cd03293 ABC_NrtD_SsuB_transpor 93.8 0.041 8.9E-07 56.8 2.8 23 168-190 32-54 (220)
432 cd03238 ABC_UvrA The excision 93.8 0.04 8.6E-07 55.8 2.6 22 167-188 22-43 (176)
433 cd03226 ABC_cobalt_CbiO_domain 93.8 0.041 8.9E-07 56.1 2.7 24 167-190 27-50 (205)
434 cd03281 ABC_MSH5_euk MutS5 hom 93.8 0.33 7.1E-06 50.6 9.4 21 167-187 30-50 (213)
435 cd03224 ABC_TM1139_LivF_branch 93.8 0.042 9E-07 56.6 2.7 24 167-190 27-50 (222)
436 cd03260 ABC_PstB_phosphate_tra 93.8 0.04 8.7E-07 57.0 2.6 24 167-190 27-50 (227)
437 cd03264 ABC_drug_resistance_li 93.7 0.039 8.4E-07 56.5 2.4 23 168-190 27-49 (211)
438 cd03259 ABC_Carb_Solutes_like 93.7 0.043 9.4E-07 56.3 2.8 23 168-190 28-50 (213)
439 cd01131 PilT Pilus retraction 93.7 0.037 7.9E-07 56.8 2.2 22 168-189 3-24 (198)
440 COG3839 MalK ABC-type sugar tr 93.7 0.04 8.6E-07 61.4 2.5 24 168-191 31-54 (338)
441 PRK10078 ribose 1,5-bisphospho 93.7 0.045 9.8E-07 55.2 2.7 24 167-190 3-26 (186)
442 cd03258 ABC_MetN_methionine_tr 93.7 0.045 9.7E-07 56.9 2.8 25 167-191 32-56 (233)
443 TIGR02315 ABC_phnC phosphonate 93.6 0.045 9.7E-07 57.2 2.7 23 168-190 30-52 (243)
444 cd03263 ABC_subfamily_A The AB 93.6 0.045 9.8E-07 56.3 2.7 23 168-190 30-52 (220)
445 cd03292 ABC_FtsE_transporter F 93.6 0.047 1E-06 55.9 2.8 23 168-190 29-51 (214)
446 cd03269 ABC_putative_ATPase Th 93.6 0.047 1E-06 55.9 2.8 24 167-190 27-50 (210)
447 TIGR02211 LolD_lipo_ex lipopro 93.6 0.047 1E-06 56.2 2.8 24 167-190 32-55 (221)
448 cd03262 ABC_HisP_GlnQ_permease 93.6 0.047 1E-06 55.8 2.8 23 168-190 28-50 (213)
449 KOG1533 Predicted GTPase [Gene 93.6 0.069 1.5E-06 56.5 3.9 28 167-194 3-36 (290)
450 KOG0066 eIF2-interacting prote 93.6 0.31 6.7E-06 55.6 9.2 23 167-189 614-636 (807)
451 cd03235 ABC_Metallic_Cations A 93.5 0.048 1E-06 55.9 2.7 24 167-190 26-49 (213)
452 cd03216 ABC_Carb_Monos_I This 93.5 0.052 1.1E-06 53.8 2.8 24 167-190 27-50 (163)
453 PRK11174 cysteine/glutathione 93.5 0.18 4E-06 59.7 7.9 24 167-190 377-400 (588)
454 PRK15177 Vi polysaccharide exp 93.5 0.05 1.1E-06 56.3 2.7 24 167-190 14-37 (213)
455 cd03257 ABC_NikE_OppD_transpor 93.5 0.05 1.1E-06 56.1 2.7 24 167-190 32-55 (228)
456 cd03218 ABC_YhbG The ABC trans 93.5 0.05 1.1E-06 56.4 2.8 24 167-190 27-50 (232)
457 PRK13851 type IV secretion sys 93.4 0.049 1.1E-06 60.9 2.8 23 167-189 163-185 (344)
458 TIGR00235 udk uridine kinase. 93.4 0.054 1.2E-06 55.7 2.9 24 166-189 6-29 (207)
459 PRK07261 topology modulation p 93.4 0.051 1.1E-06 54.5 2.6 22 168-189 2-23 (171)
460 cd03256 ABC_PhnC_transporter A 93.4 0.052 1.1E-06 56.6 2.7 24 167-190 28-51 (241)
461 PF13238 AAA_18: AAA domain; P 93.4 0.056 1.2E-06 49.9 2.7 21 169-189 1-21 (129)
462 TIGR01978 sufC FeS assembly AT 93.4 0.052 1.1E-06 56.7 2.8 23 167-189 27-49 (243)
463 PRK14242 phosphate transporter 93.4 0.05 1.1E-06 57.3 2.6 22 168-189 34-55 (253)
464 PRK11629 lolD lipoprotein tran 93.4 0.053 1.1E-06 56.5 2.7 23 168-190 37-59 (233)
465 TIGR01189 ccmA heme ABC export 93.4 0.054 1.2E-06 55.0 2.8 24 167-190 27-50 (198)
466 cd03268 ABC_BcrA_bacitracin_re 93.4 0.055 1.2E-06 55.3 2.8 24 167-190 27-50 (208)
467 smart00072 GuKc Guanylate kina 93.4 0.042 9.1E-07 55.5 1.9 53 167-220 3-55 (184)
468 TIGR02322 phosphon_PhnN phosph 93.3 0.05 1.1E-06 54.1 2.4 22 168-189 3-24 (179)
469 cd03266 ABC_NatA_sodium_export 93.3 0.055 1.2E-06 55.6 2.7 24 167-190 32-55 (218)
470 cd03301 ABC_MalK_N The N-termi 93.3 0.056 1.2E-06 55.4 2.8 24 167-190 27-50 (213)
471 cd03287 ABC_MSH3_euk MutS3 hom 93.3 0.42 9.1E-06 50.3 9.3 22 167-188 32-53 (222)
472 cd03229 ABC_Class3 This class 93.3 0.057 1.2E-06 54.1 2.8 25 167-191 27-51 (178)
473 PRK11248 tauB taurine transpor 93.3 0.055 1.2E-06 57.6 2.8 25 167-191 28-52 (255)
474 PRK13539 cytochrome c biogenes 93.3 0.057 1.2E-06 55.4 2.8 25 167-191 29-53 (207)
475 cd03219 ABC_Mj1267_LivG_branch 93.3 0.056 1.2E-06 56.3 2.7 24 167-190 27-50 (236)
476 cd03231 ABC_CcmA_heme_exporter 93.2 0.058 1.3E-06 55.1 2.8 24 167-190 27-50 (201)
477 PRK13541 cytochrome c biogenes 93.2 0.058 1.3E-06 54.7 2.7 24 167-190 27-50 (195)
478 cd03254 ABCC_Glucan_exporter_l 93.2 0.058 1.2E-06 55.9 2.7 23 168-190 31-53 (229)
479 PRK10584 putative ABC transpor 93.2 0.058 1.2E-06 55.9 2.7 24 167-190 37-60 (228)
480 PRK10908 cell division protein 93.2 0.058 1.3E-06 55.7 2.8 24 167-190 29-52 (222)
481 PF00625 Guanylate_kin: Guanyl 93.2 0.013 2.9E-07 58.9 -1.9 22 168-189 4-25 (183)
482 cd03283 ABC_MutS-like MutS-lik 93.2 0.34 7.3E-06 49.9 8.3 21 168-188 27-47 (199)
483 TIGR02770 nickel_nikD nickel i 93.2 0.058 1.3E-06 56.2 2.7 25 167-191 13-37 (230)
484 PRK11264 putative amino-acid A 93.2 0.059 1.3E-06 56.7 2.8 23 168-190 31-53 (250)
485 cd03296 ABC_CysA_sulfate_impor 93.2 0.059 1.3E-06 56.4 2.7 23 168-190 30-52 (239)
486 PRK05480 uridine/cytidine kina 93.2 0.063 1.4E-06 55.0 2.9 25 165-189 5-29 (209)
487 PRK14247 phosphate ABC transpo 93.1 0.059 1.3E-06 56.7 2.7 24 167-190 30-53 (250)
488 PRK13540 cytochrome c biogenes 93.1 0.062 1.3E-06 54.8 2.7 24 167-190 28-51 (200)
489 cd03297 ABC_ModC_molybdenum_tr 93.1 0.061 1.3E-06 55.3 2.7 23 168-190 25-47 (214)
490 cd03215 ABC_Carb_Monos_II This 93.1 0.067 1.5E-06 53.7 2.9 25 167-191 27-51 (182)
491 PRK14241 phosphate transporter 93.1 0.06 1.3E-06 57.1 2.7 24 167-190 31-54 (258)
492 PRK11124 artP arginine transpo 93.1 0.062 1.3E-06 56.3 2.7 24 167-190 29-52 (242)
493 cd02042 ParA ParA and ParB of 93.1 0.66 1.4E-05 41.9 9.2 72 169-263 2-74 (104)
494 PRK13543 cytochrome c biogenes 93.1 0.064 1.4E-06 55.3 2.8 24 168-191 39-62 (214)
495 TIGR03864 PQQ_ABC_ATP ABC tran 93.1 0.063 1.4E-06 56.1 2.8 24 167-190 28-51 (236)
496 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.1 0.065 1.4E-06 55.9 2.9 24 167-190 30-53 (238)
497 PRK10895 lipopolysaccharide AB 93.0 0.064 1.4E-06 56.1 2.8 24 167-190 30-53 (241)
498 PRK14269 phosphate ABC transpo 93.0 0.063 1.4E-06 56.5 2.7 24 167-190 29-52 (246)
499 PRK14239 phosphate transporter 93.0 0.064 1.4E-06 56.5 2.7 22 168-189 33-54 (252)
500 cd03214 ABC_Iron-Siderophores_ 93.0 0.068 1.5E-06 53.6 2.8 24 167-190 26-49 (180)
No 1
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=5.4e-215 Score=1801.74 Aligned_cols=694 Identities=44% Similarity=0.720 Sum_probs=649.4
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCC
Q 003857 82 QNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIP 161 (791)
Q Consensus 82 ~~~~~e~k~~~~kIe~lR~~Ll~l~~rLg~~~ed~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~ 161 (791)
...++++++++++|+.||++|+++++|+|+++++.+++|||||+.+++..+. ...++++.+..+|.++++.+.+
T Consensus 40 ~~~~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l~~~~~~------~~~~s~d~a~~~a~~~ea~g~~ 113 (763)
T TIGR00993 40 TTLSEEHKEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGLLAGRQG------GGAFSLDAAKAMAEQLEAEGQD 113 (763)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHhhccCc------cccccchhhHHHHhhhhhhhcc
Confidence 5677889999999999999999999999999999999999999998653221 1335579999999999999999
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
++++.++|+|+|+||||||||||+|+|+.++.++...++|+++..+...+.|..+.||||||+.++... ...+.++++.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~d-q~~neeILk~ 192 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASD-QSKNEKILSS 192 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccc-hHHHHHHHHH
Confidence 999999999999999999999999999999988877788888888777889999999999999987543 2456788888
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhChHHH
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLV 321 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~~~l 321 (791)
+++++...++|+||||++++..+.+..+..+++.|++.||..+|+++|||||++|.++|+++++.+.+|++|+.++.+.+
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~L 272 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIV 272 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHH
Confidence 98888878899999999998776555677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcc-----hhhhhhcCccccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhcccccccc-CCC
Q 003857 322 QQRIHQAVSDARLEN-----QVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIEL-GPL 395 (791)
Q Consensus 322 q~~I~q~~~d~~~~~-----pv~lVen~P~c~~n~~ge~vLP~~~~W~~~L~~~C~s~ki~~eA~~~lk~~~~~~~-~~~ 395 (791)
|++|++|.++++++| ||.+|||||.|.+|..||++||+++.|+++|+++|++.|++.+|+++++.|+.+.. .||
T Consensus 273 q~~Irq~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~ 352 (763)
T TIGR00993 273 QQAIGQAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPF 352 (763)
T ss_pred HHHHHHhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCcc
Confidence 999999999999888 99999999999999999999999999999999999999999999999999998764 345
Q ss_pred CC-CCCCCchHHHHhhhccCCCCCCcc--------cchhhhhhhhcc-CCccccccCCCCCcccchHHHHHhhHHhhhhh
Q 003857 396 GN-TRVPSMPHLLSSFLRHRSLSSPSE--------AENEIDEILASE-IDEEDEYDQLPPIKILKKSQFERLSKSQKKSY 465 (791)
Q Consensus 396 ~~-~~~~plp~l~~~~l~~~~~~~~~~--------~~~~~~~~~~~~-~~~e~eyd~lp~~~~l~k~~~~~l~~~~~~~y 465 (791)
.. .|+|||||||||||++|+|+|+++ +|.|++|++|+| +|+|||||||||||||+|||++||||||||+|
T Consensus 353 ~~~~~~~plp~~ls~ll~~r~~~k~~~~~~~~~~d~d~~~~~~~d~~~ed~e~eydqlppf~~l~ksq~~kl~k~q~k~y 432 (763)
T TIGR00993 353 GFRSRAPPLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELEDSSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAY 432 (763)
T ss_pred cccccCCchHHHHHHHhhcCCCCCChhhhcCccccccchhhhccccccccccccccccCCCccccHHHHHHHhHHHHHHH
Confidence 43 499999999999999999999998 456666776654 45578999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHHHhhhccccC------CCCCCC-CCCCCCccccccCCCCCCCCCCCCCcccceeeec
Q 003857 466 LDELDYREILYFKKQLKEESRRRKENKLSKEEC------LPNDST-PDEQTSSEAVMLPDMVVPPSFDPDCLAYRYRCLV 538 (791)
Q Consensus 466 ~~e~~~r~~l~~kkq~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~d~~~p~sfd~d~~~~ryr~l~ 538 (791)
|||||||||||||||||||+||+|||||+|+++ ++++++ ++++|++|+||||||+||||||||||+||||||+
T Consensus 433 ~de~dyr~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~pd~~lp~sFDsD~p~~rYr~l~ 512 (763)
T TIGR00993 433 LEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSEEVDEENGGPAAVPVPLPDMVLPASFDSDNPAYRYRYLE 512 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccCcccccccccCCCccccccCccccCCCccCCCCccceeeccc
Confidence 999999999999999999999999999999866 233333 6668999999999999999999999999999999
Q ss_pred cCCceeeeeecCCCCCCccCCCCccchhhhhhhccccceeEEEEEeecccceeeeecceeEEeCCCCCeeeeeeeeeccC
Q 003857 539 TSDQWLVRPVLDLQGWDHDVGFDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAYVDPEGPTYCIGLDVQSSG 618 (791)
Q Consensus 539 ~~~~~~~rpv~~~~gwdh~~g~dg~~~e~~~~~~~~~~~~~~~q~~kdk~~~~~~~~~~~~~~~~~~~~~~~g~d~q~~~ 618 (791)
+++|||||||||+|||||||||||||+|++++|+++||++++||||||||||+||+|||+||||++++|||+||||||+|
T Consensus 513 ~~~q~l~rpvl~~~gWDhd~g~dg~~~e~~~~~~~~~p~s~~~q~~kdkk~~~i~~e~~~s~kh~~~~s~~~g~diQ~~g 592 (763)
T TIGR00993 513 PSSQLLTRPVLDTHGWDHDCGYDGVNAERSFAVKEKFPASVTVQVTKDKKDFNIHLDSSVSAKHGENGSTMAGFDIQNVG 592 (763)
T ss_pred CccceeEeecccCCCCccccCcCcccHHHHHHHHhcCcceEEEEEeechhhceeeeeeeeeeecCCCcceeeeeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecccccccccccccccceeEeeeCCeeeeeceeeeeeeecceeEEEEeccceeecCcccccceeEEEecCCCC
Q 003857 619 KDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLVMNAGRMGGSGQVAYGGSFEAILRGADY 698 (791)
Q Consensus 619 ~~~~y~~~~~t~~~~~~~n~~~~g~~~t~~g~~~~~g~k~ed~~~~~~~~~~~~~~g~~~~~~~~a~g~~~e~~~~~~~~ 698 (791)
||||||+||||||||||+|||+||+|+||||++|++|+||||+|+|||||+||+|+|+|+++||+||||||||+||++||
T Consensus 593 k~l~yt~r~etk~kn~~~n~t~~g~s~t~lg~~~~~G~K~Ed~~~~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dy 672 (763)
T TIGR00993 593 KQLAYTVRGETKFKNFRRNKTAAGLSVTFLGENVSTGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADF 672 (763)
T ss_pred hheEEEEeccceecccccccccceeEEEEecceeeeeeeehheeeeccceEEEEecceeeccCcccccceeEEEeecCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccceeeeeeccccceEEeecccceecccCCceeEEEEeeCCCcceeEEEEecCchhHHHHHHHHHHHHHHHHhhh
Q 003857 699 PVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHMEIALLAVFSIFRGLLRRK 778 (791)
Q Consensus 699 p~~~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~~~~g~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~ 778 (791)
|++++++|||||+|+|||||||||||||||++||+|+|++|||||||++||||||+|||||+||||+|+|||+++||+|+
T Consensus 673 p~~~~~~tl~~s~~~w~~~~~l~~n~qsq~~~gr~s~~~~~~~lnn~~~Gqi~ir~~sse~~~ial~~~~~~~~~l~~~~ 752 (763)
T TIGR00993 673 PLGQDQSSLGLSLVDWRGDLALGANIQSQVSIGRSSKLAARAGLNNKGSGQISVRTSSSDQLQIALVAILPLAKKIYKYY 752 (763)
T ss_pred CCCCCcchhceeeeccccceeeeccceeeecccCCceEEEEecccCcccceEEEEeccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 003857 779 AAEN 782 (791)
Q Consensus 779 ~~~~ 782 (791)
+|..
T Consensus 753 ~~~~ 756 (763)
T TIGR00993 753 YPQT 756 (763)
T ss_pred CcCC
Confidence 9973
No 2
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=100.00 E-value=1.5e-130 Score=1004.11 Aligned_cols=273 Identities=51% Similarity=0.847 Sum_probs=270.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccceeeeccCCceeeeeecCCCCCCccCCCCccchhhhhhhccccceeEEEEEeec
Q 003857 507 EQTSSEAVMLPDMVVPPSFDPDCLAYRYRCLVTSDQWLVRPVLDLQGWDHDVGFDGINLETAVEIKSNVFASIAGQITKD 586 (791)
Q Consensus 507 ~~~~~~~~~~~d~~~p~sfd~d~~~~ryr~l~~~~~~~~rpv~~~~gwdh~~g~dg~~~e~~~~~~~~~~~~~~~q~~kd 586 (791)
+.|++||||||||+||||||||||+|||||||+++|||||||||+|||||||||||||+|++++|+++||++++|||+||
T Consensus 1 ~~~~~v~vp~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KD 80 (273)
T PF11886_consen 1 EGPAQVPVPMPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDPHGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKD 80 (273)
T ss_pred CCCccceecCCcccCCCCcCCCCCceeeEeecCccceeEeecccCCCcccccCccceehhheehhhcCCceEEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecceeEEeCCCCCeeeeeeeeeccCcceEEEEecccccccccccccccceeEeeeCCeeeeeceeeeeeeecc
Q 003857 587 KHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGK 666 (791)
Q Consensus 587 k~~~~~~~~~~~~~~~~~~~~~~~g~d~q~~~~~~~y~~~~~t~~~~~~~n~~~~g~~~t~~g~~~~~g~k~ed~~~~~~ 666 (791)
||||+||+|||+||||++++|+|+||||||+||||+||+||||||||||||||+||+|+||||++|++|+||||+|+|||
T Consensus 81 Kkd~~i~~e~s~s~kh~~~~s~~~G~DiQt~gkdLaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgk 160 (273)
T PF11886_consen 81 KKDFNIQLESSASYKHGEGGSSMAGFDIQTVGKDLAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGK 160 (273)
T ss_pred hhheeEEEeeEEEEEcCCCceEEEEEeeeecCceeEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccceeecCcccccceeEEEecCCCCCCcCcccceeeeeeccccceEEeecccceecccCCceeEEEEeeCCCc
Q 003857 667 RLKLVMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRK 746 (791)
Q Consensus 667 ~~~~~~~~g~~~~~~~~a~g~~~e~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~~~ 746 (791)
|+|||+|+|+|+++||+||||||||+||++|||++|+++|||||+|+|||||||||||||||++||+|||+||||||||+
T Consensus 161 rlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~ 240 (273)
T PF11886_consen 161 RLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKG 240 (273)
T ss_pred cEEEEEEccEeeecCceeeceeEEEEeecCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCchhHHHHHHHHHHHHHHHHhhhc
Q 003857 747 MGQVCIKLNSSAHMEIALLAVFSIFRGLLRRKA 779 (791)
Q Consensus 747 ~g~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~ 779 (791)
+||||||+|||||+||||+|+|||+++||+|++
T Consensus 241 ~Gqisik~sSSe~lqIALi~~vpi~~~l~~r~~ 273 (273)
T PF11886_consen 241 TGQISIKTSSSEQLQIALIGLVPIARSLLRRLR 273 (273)
T ss_pred cceEEEEecchHhHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999974
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=3.2e-37 Score=324.49 Aligned_cols=241 Identities=52% Similarity=0.898 Sum_probs=215.7
Q ss_pred hhhhhHHHHHHhhhcCCCCCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCC
Q 003857 144 RSDRTRAIAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPG 223 (791)
Q Consensus 144 ~~~~~~~la~~~e~~g~~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPG 223 (791)
..+.+...+.+++..+.+....+++|+|+|++|||||||+|+|+|...+.++.+.++|+++..+...++|.++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPG 88 (249)
T cd01853 9 FPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPG 88 (249)
T ss_pred CcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCC
Confidence 34555666677777777888899999999999999999999999999988888888999988888889999999999999
Q ss_pred CCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCC
Q 003857 224 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS 303 (791)
Q Consensus 224 l~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~ 303 (791)
+.+.... ...+..++..+++++...++|+||||+++|..+.+..|..+++.|.+.||..+|.++++|+||+|..+|++.
T Consensus 89 l~~~~~~-~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 89 LLESVMD-QRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred cCcchhh-HHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 9987432 245677788888888777899999999999877777788999999999999999999999999999999999
Q ss_pred CCCccchHHHHhhChHHHHHHHHHHhcccCCcchhhhhhcCccccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhh
Q 003857 304 SGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANAL 383 (791)
Q Consensus 304 ~~~~~~~e~~i~q~~~~lq~~I~q~~~d~~~~~pv~lVen~P~c~~n~~ge~vLP~~~~W~~~L~~~C~s~ki~~eA~~~ 383 (791)
++.+..++.+...+.+..++.++...++..+.+|+.+|+|+|.|.+|..||++||+++.|+++|+++|++.++..+|+.+
T Consensus 168 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~ 247 (249)
T cd01853 168 NGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANIL 247 (249)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhccccccc
Confidence 99999999998888888999999888888999999999999999999999999999999999999999999999998877
Q ss_pred hc
Q 003857 384 LG 385 (791)
Q Consensus 384 lk 385 (791)
++
T Consensus 248 ~~ 249 (249)
T cd01853 248 LD 249 (249)
T ss_pred cC
Confidence 53
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=1.2e-35 Score=318.76 Aligned_cols=252 Identities=27% Similarity=0.464 Sum_probs=212.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|++|||||||+|+|+|+.++.++.+.+.|...........|.++.||||||+.+.. ..++...+.++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~----~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG----YINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH----HHHHHHHHHHH
Confidence 34589999999999999999999999998888777777666666667789999999999998763 34555666777
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhChHHHHH
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQ 323 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~~~lq~ 323 (791)
.++...++|+||||+++|..+.+..|..+++.|++.||..+|.++|+||||+|..+|++ .+|++|+.++.+.+|+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~-----~~~e~fv~~~~~~lq~ 186 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG-----LEYNDFFSKRSEALLR 186 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC-----CCHHHHHHhcHHHHHH
Confidence 77766789999999998876666678899999999999999999999999999997775 4799999999999999
Q ss_pred HHHHHhcccC-----CcchhhhhhcCccccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccCCCCCC
Q 003857 324 RIHQAVSDAR-----LENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELGPLGNT 398 (791)
Q Consensus 324 ~I~q~~~d~~-----~~~pv~lVen~P~c~~n~~ge~vLP~~~~W~~~L~~~C~s~ki~~eA~~~lk~~~~~~~~~~~~~ 398 (791)
.|+++.++.+ +++|+.+|||+|.|.+|..||++||+++.|+++|+...... .....++++-+++.+. +|++|.
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 264 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEV-ISNGSKPIHVDKKLID-GPNPNN 264 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHH-HhCCCCCeEecHHHcc-CCCCCc
Confidence 9999999875 47899999999999999999999999999999999887653 6666777777777766 443433
Q ss_pred ---CCCCchHHHHhhhccCCCCCCcccchhhhh
Q 003857 399 ---RVPSMPHLLSSFLRHRSLSSPSEAENEIDE 428 (791)
Q Consensus 399 ---~~~plp~l~~~~l~~~~~~~~~~~~~~~~~ 428 (791)
.+.||-.+.+++|..+++.+ .+..|+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 295 (313)
T TIGR00991 265 RGKMFIPLIFAVQYLLVVKPIRR--AIHADIAN 295 (313)
T ss_pred ccccHHHHHHHHHHHhhhHHHHH--HHHHHHhh
Confidence 78899999999999988887 44455543
No 5
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.86 E-value=1.5e-21 Score=200.71 Aligned_cols=157 Identities=32% Similarity=0.490 Sum_probs=123.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc-CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
++|+|+|+||+||||++|+|+|.+.+.++ ...++|..+......+.|+.|+|||||||.++.. .++.+.+.+.++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~----~~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG----SDEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE----EHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc----cHHHHHHHHHHH
Confidence 68999999999999999999999998875 4567898999998899999999999999988753 356667777776
Q ss_pred Hhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhCh-HHHH
Q 003857 246 IRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCT-DLVQ 322 (791)
Q Consensus 246 l~~--~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~-~~lq 322 (791)
+.. .++|++|||++++..+ ..+..+++.+.+.||..+|++++||||++|.+.+. .+++|+++.. ..++
T Consensus 77 l~~~~~g~ha~llVi~~~r~t--~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-------~~~~~l~~~~~~~l~ 147 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLGRFT--EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-------SLEDYLKKESNEALQ 147 (212)
T ss_dssp HHHTTT-ESEEEEEEETTB-S--HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-------THHHHHHHHHHHHHH
T ss_pred HHhccCCCeEEEEEEecCcch--HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-------cHHHHHhccCchhHh
Confidence 543 3799999998888443 47889999999999999999999999999987543 3889998544 6799
Q ss_pred HHHHHHhcccCCcc
Q 003857 323 QRIHQAVSDARLEN 336 (791)
Q Consensus 323 ~~I~q~~~d~~~~~ 336 (791)
+.|++|.+.++..+
T Consensus 148 ~li~~c~~R~~~f~ 161 (212)
T PF04548_consen 148 ELIEKCGGRYHVFN 161 (212)
T ss_dssp HHHHHTTTCEEECC
T ss_pred HHhhhcCCEEEEEe
Confidence 99999988765433
No 6
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.84 E-value=1.7e-20 Score=189.78 Aligned_cols=155 Identities=21% Similarity=0.350 Sum_probs=125.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc-CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
++|+|+|+||||||||+|+|+|++.+.+. ...+.|+.+......+.|..++||||||+.+.... .+.+.+.+.++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~----~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS----PEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCC----hHHHHHHHHHH
Confidence 48999999999999999999999888775 34567888888888889999999999999987432 23344445544
Q ss_pred Hhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhChHHHHH
Q 003857 246 IRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQ 323 (791)
Q Consensus 246 l~~--~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~~~lq~ 323 (791)
+.. .++|+||||++++.. ...+..+++.+++.||..+++++++|+||+|.+.+. .+++|+......++.
T Consensus 77 ~~~~~~g~~~illVi~~~~~--t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-------~~~~~~~~~~~~l~~ 147 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRF--TEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-------TLEDYLENSCEALKR 147 (196)
T ss_pred HHhcCCCCEEEEEEEECCCc--CHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-------cHHHHHHhccHHHHH
Confidence 432 478999999877763 347889999999999999999999999999988432 588999887789999
Q ss_pred HHHHHhcccCC
Q 003857 324 RIHQAVSDARL 334 (791)
Q Consensus 324 ~I~q~~~d~~~ 334 (791)
.+++|.+.+..
T Consensus 148 l~~~c~~r~~~ 158 (196)
T cd01852 148 LLEKCGGRYVA 158 (196)
T ss_pred HHHHhCCeEEE
Confidence 99999776533
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1e-19 Score=202.51 Aligned_cols=218 Identities=18% Similarity=0.249 Sum_probs=157.2
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCC
Q 003857 88 MMDPLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLD 164 (791)
Q Consensus 88 ~k~~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~ 164 (791)
.-.+++.++.||..|+++++.+++.+ ++++ .-+....+...+..+...+..+....+..+.+ ++|
T Consensus 150 ~G~ls~~i~~lr~~li~~~a~vEa~IDfpeedi--~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il-----r~G----- 217 (454)
T COG0486 150 QGALSQLINELREALLELLAQVEANIDFPEEDI--EELVLEKIREKLEELIAELDELLATAKQGKIL-----REG----- 217 (454)
T ss_pred CCcHHHHHHHHHHHHHHHHHHheEeCCCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hcC-----
Confidence 34567889999999999999999988 2322 11222234555666677777777777777777 777
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|+||||||||+|+|+++++++|++++++|+++.+....++|+++.|+||+|++++. +..+...+.++.+.
T Consensus 218 --~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~--d~VE~iGIeRs~~~ 293 (454)
T COG0486 218 --LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD--DVVERIGIERAKKA 293 (454)
T ss_pred --ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc--cHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999763 23455555555443
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCC------CC-ccchHHHHhhC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSS------GY-PFSYESYVTQC 317 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~------~~-~~~~e~~i~q~ 317 (791)
+ ..+|+||||++.+.. ....|..++..+. ..+++++|+||.|+..+.... +. -..+.....++
T Consensus 294 -i--~~ADlvL~v~D~~~~-~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 -I--EEADLVLFVLDASQP-LDKEDLALIELLP------KKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEG 363 (454)
T ss_pred -H--HhCCEEEEEEeCCCC-CchhhHHHHHhcc------cCCCEEEEEechhcccccccchhhccCCCceEEEEecCccC
Confidence 4 467999999555442 2234555554122 247899999999998654321 11 11122222456
Q ss_pred hHHHHHHHHHHhcc
Q 003857 318 TDLVQQRIHQAVSD 331 (791)
Q Consensus 318 ~~~lq~~I~q~~~d 331 (791)
.+.+.+.|.+++..
T Consensus 364 l~~L~~~i~~~~~~ 377 (454)
T COG0486 364 LDALREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 77788888877654
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=2.8e-17 Score=182.78 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhHHHHHHHhhh--------hHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcC-----
Q 003857 93 VKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRL--------HLATLIRAGESDMKMVNLRSDRTRAIAREQEATG----- 159 (791)
Q Consensus 93 ~kIe~lR~~Ll~l~~rLg~~~ed~lva~vL~rl--------~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g----- 159 (791)
..+++....|+.++.+.|.+.+|..+++.|++. ++.+..........++.+++.....+++.|...-
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLD 158 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHH
Confidence 336666777888888899999888888888876 4455554444455566777777777777775431
Q ss_pred --------C---CCC--CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCC
Q 003857 160 --------I---PDL--DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 226 (791)
Q Consensus 160 --------~---~~~--~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d 226 (791)
. +.. ..+++|+|+|+||||||||+|+|+|+++.++++.+++|++......+++|+++++|||+|+..
T Consensus 159 ~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRr 238 (444)
T COG1160 159 AVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRR 238 (444)
T ss_pred HHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCc
Confidence 0 111 246999999999999999999999999999999988999999999999999999999999986
Q ss_pred ccc-cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 227 SCV-RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 227 ~~~-~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
... ....+.-.+.+.++. + ..+|+|++|++.... ....|..++..+.+. ++.++||+||||+...
T Consensus 239 k~ki~e~~E~~Sv~rt~~a-I--~~a~vvllviDa~~~-~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 239 KGKITESVEKYSVARTLKA-I--ERADVVLLVIDATEG-ISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEE 304 (444)
T ss_pred ccccccceEEEeehhhHhH-H--hhcCEEEEEEECCCC-chHHHHHHHHHHHHc-----CCCeEEEEEccccCCc
Confidence 531 111111122233322 2 356999999544332 334677888877776 5899999999999853
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.66 E-value=3.3e-16 Score=154.40 Aligned_cols=121 Identities=17% Similarity=0.310 Sum_probs=87.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+++|.|||||||++|+|+|.. ..++.++++|.+.......+.+..+.||||||+++.... ...+++ ...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~--s~ee~v---~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK--SEEERV---ARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS--SHHHHH---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCC--CcHHHH---HHHHH
Confidence 489999999999999999999998 667888888989888888899999999999999875321 223333 23445
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
...++|++++|++..... .+..++..+.+. ..|+++|+||+|.+...
T Consensus 75 ~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNLE---RNLYLTLQLLEL-----GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT-----TSSEEEEEETHHHHHHT
T ss_pred hhcCCCEEEEECCCCCHH---HHHHHHHHHHHc-----CCCEEEEEeCHHHHHHc
Confidence 557899999995444322 233455555544 58999999999987543
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=99.63 E-value=3.1e-15 Score=159.08 Aligned_cols=126 Identities=19% Similarity=0.231 Sum_probs=100.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
...|+|||+||||||||+|+|+|++.++++.-+.+|+.......+.+..++++|||||+..... ..++.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---~l~~~m~~~a~~s 82 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---ALGELMNKAARSA 82 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch---HHHHHHHHHHHHH
Confidence 4589999999999999999999999999998767777777777777889999999999987742 3455666666665
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 302 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~ 302 (791)
+ ..+|+||||++.+.. ....|..+++.+++. ..|.++++||.|...++.
T Consensus 83 l--~dvDlilfvvd~~~~-~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 83 L--KDVDLILFVVDADEG-WGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPKT 131 (298)
T ss_pred h--ccCcEEEEEEecccc-CCccHHHHHHHHhhc-----CCCeEEEEEccccCCcHH
Confidence 5 468999999766653 234677788888772 379999999999886543
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=2.1e-15 Score=167.95 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=97.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
..|+|||+||||||||+|.|+|+..++|++++++|++.....+.|.+.++.||||+|+.+.... .....+.++....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~--~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDED--ELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCch--HHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999865311 22333444444334
Q ss_pred hcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t-~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++|++||| +|+.. ....|..+.+.|.+. ++|+++|+||+|...
T Consensus 82 --~eADvilfv--VD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~ 126 (444)
T COG1160 82 --EEADVILFV--VDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLK 126 (444)
T ss_pred --HhCCEEEEE--EeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCch
Confidence 468999999 54432 345787888888844 589999999999873
No 12
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=6.2e-15 Score=136.38 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=83.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+|+|||||+|+|++...+.++..+++|.........+.+..+.|+||||+.+..... ........+.+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~--~~~~~~~~~~~~~- 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQD--NDGKEIRKFLEQI- 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHH--HHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhh--HHHHHHHHHHHHH-
Confidence 6899999999999999999998777888777888888666677899999999999998763221 1011233333434
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEec
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 294 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK 294 (791)
..+|+++||++.+. .....+..+++.|. ..+|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 46799999966544 11123445556663 24899999998
No 13
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=2.6e-14 Score=162.44 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=121.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCC
Q 003857 88 MMDPLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLD 164 (791)
Q Consensus 88 ~k~~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~ 164 (791)
.-.+.++++.||..|+++.+.+++.+ +|+... ..+...+......+..+.... ..+.+ ..+
T Consensus 140 ~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~-----~~~~~~l~~~~~~l~~ll~~~-~~~~~-----~~g----- 203 (442)
T TIGR00450 140 AGELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQ-----DSLNQLLLSIIAELKDILNSY-KLEKL-----DDG----- 203 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHeeEECCcCCCCccH-----HHHHHHHHHHHHHHHHHHHHH-HHHHh-----hcC-----
Confidence 44567889999999999999999877 332211 134444555555555555433 22222 333
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|++|||||||+|+|++.+.+.++.++++|+++......++|.++.++||||+.+... ......+.. ...
T Consensus 204 --~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~--~ie~~gi~~-~~~ 278 (442)
T TIGR00450 204 --FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD--FVERLGIEK-SFK 278 (442)
T ss_pred --CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh--HHHHHHHHH-HHH
Confidence 899999999999999999999998888888877777888888888999999999999976421 011111111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++.+.... ..+. .+..+.. ...|+++|+||+|+..
T Consensus 279 ~~--~~aD~il~V~D~s~~~s-~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 279 AI--KQADLVIYVLDASQPLT-KDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HH--hhCCEEEEEEECCCCCC-hhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 33 36799999966543211 1222 2222221 1479999999999863
No 14
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.60 E-value=2.3e-14 Score=163.25 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=123.2
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCC
Q 003857 88 MMDPLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLD 164 (791)
Q Consensus 88 ~k~~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~ 164 (791)
...+.+.+..||..|.++.+.+++.+ +|+.. ...+..+...+..+...++.+.......+.+ ..+
T Consensus 148 ~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~--~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~-----~~~----- 215 (449)
T PRK05291 148 QGALSKLINELREELLELLALVEAAIDFPEEDIE--FLSDEKILEKLEELIAELEALLASARQGEIL-----REG----- 215 (449)
T ss_pred CcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcC-----
Confidence 34467779999999999999998766 23221 2233345556666666666655444333333 333
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|+|++.+.+.++..+++|.+.......++|.++.|+||||+.+... ......+.... .
T Consensus 216 --~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~--~ie~~gi~~~~-~ 290 (449)
T PRK05291 216 --LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD--EVEKIGIERSR-E 290 (449)
T ss_pred --CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc--HHHHHHHHHHH-H
Confidence 899999999999999999999998887877767777777777788999999999999975421 11111122222 2
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
++ ..+|++++|++.+.... ..+..+ +.. ....|+++|+||+|+...
T Consensus 291 ~~--~~aD~il~VvD~s~~~s-~~~~~~---l~~----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 291 AI--EEADLVLLVLDASEPLT-EEDDEI---LEE----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HH--HhCCEEEEEecCCCCCC-hhHHHH---HHh----cCCCCcEEEEEhhhcccc
Confidence 23 35799999965543221 122222 222 124799999999998643
No 15
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.59 E-value=2.3e-15 Score=154.60 Aligned_cols=174 Identities=29% Similarity=0.449 Sum_probs=119.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCccccc-----C-CCCceeEEEEEE--eEECCe--EEEEEeCCCCCCccccchh
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETD-----A-FQPATDCIREVK--GSVNGI--KVTFIDTPGFLPSCVRNVK 233 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-----~-~~~~Tt~~~~~~--~~~~G~--~l~LIDTPGl~d~~~~~~~ 233 (791)
++.++|||||.+|.||||++|.||...+...+ . .-+.|+++.... .+-+|+ ++++||||||+|. .
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq-----I 118 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ-----I 118 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc-----c
Confidence 36699999999999999999999976544321 1 113455544333 334554 7899999999986 3
Q ss_pred hhHHHHHHHHHHH--------------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 234 RNRKIMLSVKKFI--------------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 234 ~n~~i~~~ikk~l--------------------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
.|+..|+-|.+++ ...++|+|||+++..+...+..|.+.++.|.+. .+++.|+.
T Consensus 119 nN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIa 192 (336)
T KOG1547|consen 119 NNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIA 192 (336)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEe
Confidence 3455555544443 234789999999999999999999999999998 89999999
Q ss_pred ccCCCCCCCCCCCccchHHHHhhChHHHHHHHHHHhcccC------------Ccc---hhhhhhcCcccccc------cc
Q 003857 294 HSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVSDAR------------LEN---QVLLVENHPQCRRN------VK 352 (791)
Q Consensus 294 K~D~l~pd~~~~~~~~~e~~i~q~~~~lq~~I~q~~~d~~------------~~~---pv~lVen~P~c~~n------~~ 352 (791)
|+|.+.-++ ...+++.|++.+.... .++ ...+-+.+||.+.+ .+
T Consensus 193 kaDtlTleE---------------r~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vn 257 (336)
T KOG1547|consen 193 KADTLTLEE---------------RSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVN 257 (336)
T ss_pred ecccccHHH---------------HHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEc
Confidence 999985332 1234444443322111 011 12455778888776 35
Q ss_pred CcccCCCccch
Q 003857 353 GEQILPNGQIW 363 (791)
Q Consensus 353 ge~vLP~~~~W 363 (791)
|+.+|.....|
T Consensus 258 G~~vlGRktrW 268 (336)
T KOG1547|consen 258 GRRVLGRKTRW 268 (336)
T ss_pred CeEeecccccc
Confidence 77888888888
No 16
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.58 E-value=5.1e-15 Score=158.60 Aligned_cols=126 Identities=28% Similarity=0.408 Sum_probs=84.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCC-------CCceeEE--EEEEeEECC--eEEEEEeCCCCCCccccch
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCI--REVKGSVNG--IKVTFIDTPGFLPSCVRNV 232 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~-------~~~Tt~~--~~~~~~~~G--~~l~LIDTPGl~d~~~~~~ 232 (791)
++.++|+|+|.+|+|||||||+|++......... ...|..+ .......+| .+++||||||+++...
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~--- 78 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN--- 78 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc---
Confidence 4568999999999999999999999876655321 1334333 233344556 4799999999998632
Q ss_pred hhhHHHHHHHHHH--------------------HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 233 KRNRKIMLSVKKF--------------------IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 233 ~~n~~i~~~ikk~--------------------l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
+...++.+..+ +...++|+|+|++..........|..+++.+.. ..++++|+
T Consensus 79 --~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~Vi 150 (276)
T cd01850 79 --NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVI 150 (276)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEE
Confidence 22333332221 123368999999665544444456677777764 27999999
Q ss_pred eccCCCCC
Q 003857 293 THSSSTLP 300 (791)
Q Consensus 293 TK~D~l~p 300 (791)
||+|++.+
T Consensus 151 nK~D~l~~ 158 (276)
T cd01850 151 AKADTLTP 158 (276)
T ss_pred ECCCcCCH
Confidence 99999853
No 17
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.58 E-value=1.3e-15 Score=163.46 Aligned_cols=127 Identities=28% Similarity=0.433 Sum_probs=81.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc-CC------CCceeEEEEE--EeEECC--eEEEEEeCCCCCCccccchh
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AF------QPATDCIREV--KGSVNG--IKVTFIDTPGFLPSCVRNVK 233 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~------~~~Tt~~~~~--~~~~~G--~~l~LIDTPGl~d~~~~~~~ 233 (791)
..++|||+|.+|+|||||||+|++....... .. ...|..+... ...-++ .+++|||||||++.-
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i----- 77 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI----- 77 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-----
Confidence 4589999999999999999999997665553 11 1123333332 233334 478999999999862
Q ss_pred hhHHHHHHHHHHH-------------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEec
Q 003857 234 RNRKIMLSVKKFI-------------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 294 (791)
Q Consensus 234 ~n~~i~~~ikk~l-------------------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK 294 (791)
.+...+..+..++ ...++|+|||++..........|...|+.|.+. .|+|.|+.|
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaK 151 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAK 151 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEEST
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEec
Confidence 2333344443333 123689999998777776666788888888876 899999999
Q ss_pred cCCCCCCC
Q 003857 295 SSSTLPEG 302 (791)
Q Consensus 295 ~D~l~pd~ 302 (791)
+|.+.+++
T Consensus 152 aD~lt~~e 159 (281)
T PF00735_consen 152 ADTLTPEE 159 (281)
T ss_dssp GGGS-HHH
T ss_pred ccccCHHH
Confidence 99986543
No 18
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4e-14 Score=157.91 Aligned_cols=188 Identities=17% Similarity=0.136 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHhhh--hHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCCCceEEEEEe
Q 003857 96 EDLQVKFLRLLQRFGQSQDNILAVKVLYRL--HLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSIRILVLG 173 (791)
Q Consensus 96 e~lR~~Ll~l~~rLg~~~ed~lva~vL~rl--~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~~~l~IlLVG 173 (791)
-.||..+....+.+++.++=.....++... ........+..++.......+....+ ..++.|+|+|
T Consensus 208 ~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~l------------q~gl~iaIvG 275 (531)
T KOG1191|consen 208 FGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERL------------QSGLQIAIVG 275 (531)
T ss_pred hhHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHh------------hcCCeEEEEc
Confidence 348899999999888877211100111111 00011111222222222222333333 3348999999
Q ss_pred ecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCE
Q 003857 174 KTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDI 253 (791)
Q Consensus 174 ktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dv 253 (791)
+||||||||+|+|..+++.+|++.+++|++..+...+++|++++|+||+|+++.. .+..+...+.++-++ + ..+|+
T Consensus 276 rPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~-~~~iE~~gI~rA~k~-~--~~adv 351 (531)
T KOG1191|consen 276 RPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES-NDGIEALGIERARKR-I--ERADV 351 (531)
T ss_pred CCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc-CChhHHHhHHHHHHH-H--hhcCE
Confidence 9999999999999999999999998889999999999999999999999999832 222444445555444 3 36799
Q ss_pred EEEEEeccCccCCCCcHHHHHHHHHHh-ccc------ccccEEEEEeccCCCCC
Q 003857 254 VLYFERLDLISMGFSDFPLLKLMTEVF-GTA------IWFNTILVMTHSSSTLP 300 (791)
Q Consensus 254 VLlV~~ld~~t~~~~D~~llk~L~~~f-g~~------i~k~vIVVLTK~D~l~p 300 (791)
|++|+++... ....+..+.+.+...- |-. ...+.|++.||.|...+
T Consensus 352 i~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 352 ILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred EEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 9999655222 1234555555554321 111 12688999999999866
No 19
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=2.3e-13 Score=146.24 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=95.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
...+|+|.|.||||||||+++|.+.+.- +.+++-+|+.+...+...++.++.+|||||+.|.... ..|.--.+++..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~--ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE--ERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChH--HhcHHHHHHHHH
Confidence 3479999999999999999999986644 4557667777888888889999999999999998764 344443444432
Q ss_pred HHhcCCCCEEEEEEeccCccCCC--CcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGF--SDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~--~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
+. .=.++|||+++.+...... ....+++.+...|. .|+++|+||+|...+
T Consensus 244 -L~-hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 244 -LR-HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred -HH-HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 21 1237999997776654332 23468888888875 689999999998743
No 20
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.54 E-value=3.1e-14 Score=154.83 Aligned_cols=178 Identities=22% Similarity=0.332 Sum_probs=118.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCccccc---CCCC----ceeEEEEEEeEE--CC--eEEEEEeCCCCCCccccch
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETD---AFQP----ATDCIREVKGSV--NG--IKVTFIDTPGFLPSCVRNV 232 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs---~~~~----~Tt~~~~~~~~~--~G--~~l~LIDTPGl~d~~~~~~ 232 (791)
+..++||++|++|.||||+||+|++....... ...+ .|..+......+ +| .++++||||||+|.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~----- 95 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF----- 95 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc-----
Confidence 45699999999999999999999997333221 1222 233344333333 34 37899999999987
Q ss_pred hhhHHHHHHHHHHH--------------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 233 KRNRKIMLSVKKFI--------------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 233 ~~n~~i~~~ikk~l--------------------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
..|...++.+..++ ...++|+|||+++..+......|..+|+.|.+. .++|.|+
T Consensus 96 idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI 169 (373)
T COG5019 96 IDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVI 169 (373)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeee
Confidence 23455555555543 234799999999988888888999999999987 7999999
Q ss_pred eccCCCCCCCCCCCccchHHHHhhChHHHHHHHHHHh-cccC---Cc--------chhhhhhcCcccccc------ccCc
Q 003857 293 THSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAV-SDAR---LE--------NQVLLVENHPQCRRN------VKGE 354 (791)
Q Consensus 293 TK~D~l~pd~~~~~~~~~e~~i~q~~~~lq~~I~q~~-~d~~---~~--------~pv~lVen~P~c~~n------~~ge 354 (791)
.|+|.++.++ +.+.+..+.+.|.++- .-+. .+ ....+...+||.+.+ ..|+
T Consensus 170 ~KaD~lT~~E-----------l~~~K~~I~~~i~~~nI~vf~pyd~e~~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~ 238 (373)
T COG5019 170 AKADTLTDDE-----------LAEFKERIREDLEQYNIPVFDPYDPEDDEDESLEENQDLRSLIPFAIIGSNTEIENGGE 238 (373)
T ss_pred eccccCCHHH-----------HHHHHHHHHHHHHHhCCceeCCCCccccchhhHHHHHHHhhcCCeEEEeccceeccCCc
Confidence 9999997654 2222333444444331 1111 11 112567778888655 2345
Q ss_pred ccCCCccch
Q 003857 355 QILPNGQIW 363 (791)
Q Consensus 355 ~vLP~~~~W 363 (791)
.+..+.++|
T Consensus 239 ~vrgR~YpW 247 (373)
T COG5019 239 QVRGRKYPW 247 (373)
T ss_pred eeeeeccCC
Confidence 667777888
No 21
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=4.8e-14 Score=148.41 Aligned_cols=153 Identities=18% Similarity=0.284 Sum_probs=108.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.+++|+++|+||+|||||||+||+.+...++.+..+|....+.....++..++|+||||+++.. ..+.+....+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~----~~D~~~r~~~~d 113 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK----DKDAEHRQLYRD 113 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch----hhhHHHHHHHHH
Confidence 4589999999999999999999988888887665566555555666678899999999999874 334455555555
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCC----C-CccchHHHHhhChH
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSS----G-YPFSYESYVTQCTD 319 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~----~-~~~~~e~~i~q~~~ 319 (791)
++ .+.|+||++++.+.... ..|..+++.+.-.. ..+++++++|.+|.+.|-..+ + ....+++|++++.+
T Consensus 114 ~l--~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~ 187 (296)
T COG3596 114 YL--PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE 187 (296)
T ss_pred Hh--hhccEEEEeccCCCccc-cCCHHHHHHHHHhc---cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence 55 45699999976665543 24555665555432 237999999999999774221 1 12246677776666
Q ss_pred HHHHHHHH
Q 003857 320 LVQQRIHQ 327 (791)
Q Consensus 320 ~lq~~I~q 327 (791)
.+.+.|++
T Consensus 188 ~~~~~~q~ 195 (296)
T COG3596 188 ALGRLFQE 195 (296)
T ss_pred HHHHHHhh
Confidence 66666665
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.51 E-value=4.1e-13 Score=148.55 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=95.5
Q ss_pred HhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce
Q 003857 122 LYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT 201 (791)
Q Consensus 122 L~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T 201 (791)
+++..+...+..+...+..+.......+.. + .....++|+|+|.||||||||+|+|++.+ +.+.....+|
T Consensus 154 ~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~-----r----~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT 223 (351)
T TIGR03156 154 TDRRLIRERIAQLKKELEKVEKQRERQRRR-----R----KRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFAT 223 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----h----cccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccc
Confidence 344556666777776666665443333332 1 11223799999999999999999999987 4455554666
Q ss_pred eEEEEEEeEE-CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHH-HHHHHHHH
Q 003857 202 DCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFP-LLKLMTEV 279 (791)
Q Consensus 202 t~~~~~~~~~-~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~-llk~L~~~ 279 (791)
.++......+ +|.++.|+||||+...-.. ...+.+...+ ..+ ..+|++++|++.+.... ..+.. +.+.+..
T Consensus 224 ~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~--~lie~f~~tl-e~~--~~ADlil~VvD~s~~~~-~~~~~~~~~~L~~- 296 (351)
T TIGR03156 224 LDPTTRRLDLPDGGEVLLTDTVGFIRDLPH--ELVAAFRATL-EEV--READLLLHVVDASDPDR-EEQIEAVEKVLEE- 296 (351)
T ss_pred cCCEEEEEEeCCCceEEEEecCcccccCCH--HHHHHHHHHH-HHH--HhCCEEEEEEECCCCch-HHHHHHHHHHHHH-
Confidence 6666555666 6789999999999432000 1112221111 222 36799999966543321 11111 1233333
Q ss_pred hcccccccEEEEEeccCCC
Q 003857 280 FGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 280 fg~~i~k~vIVVLTK~D~l 298 (791)
++. ...|+++|+||+|+.
T Consensus 297 l~~-~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 297 LGA-EDIPQLLVYNKIDLL 314 (351)
T ss_pred hcc-CCCCEEEEEEeecCC
Confidence 221 137899999999986
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.50 E-value=1.5e-13 Score=146.29 Aligned_cols=119 Identities=22% Similarity=0.257 Sum_probs=83.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|+||||||||+|+|+|++.+.++..+.+|+.........++.+++|+||||+.+... .....+.+....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~l- 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSAI- 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHHH-
Confidence 79999999999999999999999888887656666555444455667899999999976521 12233334444444
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|+++||++.+.... .+..+++.+... ..|+++|+||+|+.
T Consensus 78 -~~aDvvl~VvD~~~~~~--~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 78 -GGVDLILFVVDSDQWNG--DGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred -hhCCEEEEEEECCCCCc--hHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 46799999966654321 223444444432 47999999999986
No 24
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=3.9e-13 Score=136.43 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=92.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...-|+++|++||||||+||+|+++. .+.++..++.|..+..+... + .+.+||.||++-..... ...+++...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k-~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPK-EVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCH-HHHHHHHHHHH
Confidence 44689999999999999999999966 57777776667666665542 2 28999999999886653 44556666677
Q ss_pred HHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 244 KFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 244 k~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
.++... ....++++++.... ....|.++++.+... ..++++|+||+|.+...
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~-~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHP-PKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKS 151 (200)
T ss_pred HHHhhchhheEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCeEEEEEccccCChh
Confidence 777543 34455555333322 234577888888876 58999999999998643
No 25
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-13 Score=149.60 Aligned_cols=128 Identities=26% Similarity=0.382 Sum_probs=91.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccc------cCCCCceeEEEEEEeE--ECCe--EEEEEeCCCCCCccccchh
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTET------DAFQPATDCIREVKGS--VNGI--KVTFIDTPGFLPSCVRNVK 233 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~v------s~~~~~Tt~~~~~~~~--~~G~--~l~LIDTPGl~d~~~~~~~ 233 (791)
++.+++|++|.+|.|||||||+||+...... ..-...|..+...... -+|. +++|||||||+|.-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v----- 93 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV----- 93 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc-----
Confidence 4669999999999999999999998743322 1111223444333333 3443 78999999999872
Q ss_pred hhHHHHHHHHHHH-------------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEec
Q 003857 234 RNRKIMLSVKKFI-------------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 294 (791)
Q Consensus 234 ~n~~i~~~ikk~l-------------------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK 294 (791)
.|...++.+..++ ...++|+|||++...+...+..|..+|+.+... .++|.|+.|
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~K 167 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAK 167 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeec
Confidence 2333334433332 223799999998888888888899999999886 799999999
Q ss_pred cCCCCCCC
Q 003857 295 SSSTLPEG 302 (791)
Q Consensus 295 ~D~l~pd~ 302 (791)
+|.+++++
T Consensus 168 aD~lT~~E 175 (366)
T KOG2655|consen 168 ADTLTKDE 175 (366)
T ss_pred cccCCHHH
Confidence 99997654
No 26
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.45 E-value=1.3e-12 Score=124.19 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=82.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+++|++|+|||||+|+|+|...+.......+|...........+..+.++||||+.+.... ............
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK---LGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH---HHHHHHHHHHHH
Confidence 47999999999999999999999887766554445554444444556789999999999765321 112222222222
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|++.... ....+..+++.+... ..+.++|+||+|+.
T Consensus 80 ~--~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 L--KDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred H--HhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 3 467999999666543 122344455555443 37899999999986
No 27
>PRK00089 era GTPase Era; Reviewed
Probab=99.45 E-value=7.7e-13 Score=141.94 Aligned_cols=122 Identities=21% Similarity=0.245 Sum_probs=83.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
...|+|+|++|||||||+|+|+|+..+.++..+.+|+..........+.+++++||||+.+... ..++.+.......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~---~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR---ALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh---HHHHHHHHHHHHH
Confidence 4689999999999999999999999888876545555444333334568999999999976531 1223333333333
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ ..+|+++||++.+.. ....+..+++.+.. ...|+++|+||+|+.
T Consensus 82 ~--~~~D~il~vvd~~~~-~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 82 L--KDVDLVLFVVDADEK-IGPGDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred H--hcCCEEEEEEeCCCC-CChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 3 467999999666541 22234445554442 247999999999986
No 28
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.44 E-value=1.4e-12 Score=123.99 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=82.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+++|++|+|||||+|+|++.....+....++|.........+.+.+++++||||+.+.... ..... ......++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~-~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIG-IERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHH-HHHHHHHH
Confidence 6899999999999999999999886666666566666666666778899999999999765321 11111 12222333
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
..+|++++|++++.... ..+..+ +... ...++++|+||+|+...
T Consensus 79 --~~~~~~v~v~d~~~~~~-~~~~~~---~~~~----~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 79 --EEADLVLFVIDASRGLD-EEDLEI---LELP----ADKPIIVVLNKSDLLPD 122 (157)
T ss_pred --hhCCEEEEEEECCCCCC-HHHHHH---HHhh----cCCCEEEEEEchhcCCc
Confidence 36799999976664221 122222 2222 24899999999998743
No 29
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=2.2e-12 Score=128.38 Aligned_cols=126 Identities=19% Similarity=0.245 Sum_probs=81.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
...++|+|+|.+|+|||||+|+|++.. ...++...++|..+..+.. . ..++|+||||+....... .........+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~-~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSK-EEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCCh-hHHHHHHHHH
Confidence 445899999999999999999999975 4555555556666554433 2 379999999997653321 1122233333
Q ss_pred HHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++... ..|++++|++.+.. ....+..+++.+... ..|+++|+||+|+..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~-~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHP-LKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 3444432 46889999655432 222333445444432 479999999999863
No 30
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.42 E-value=1.5e-12 Score=123.92 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=81.8
Q ss_pred EEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcC
Q 003857 170 LVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 249 (791)
Q Consensus 170 lLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~ 249 (791)
+|+|.+|||||||+|+|++.....++...++|.+.......+.+..+.++||||+.+... .....+......++ .
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~--~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAI--E 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHH--H
Confidence 479999999999999999987666655656676666667778889999999999976421 11222333333333 3
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 250 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 250 ~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+|++++|++.... ....+..+.+.+.+. ..|+++|+||+|+..
T Consensus 76 ~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREG-LTPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEecccc-CCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 57999999655332 112344455555443 389999999999863
No 31
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.40 E-value=2.2e-12 Score=145.41 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=89.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|||++|||||||+|.|++...+.++..+++|++.......+.|..+.||||||+.... ....+.+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~- 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---DGLDKQIREQAEIAI- 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---hhHHHHHHHHHHHHH-
Confidence 4899999999999999999999888887777788888888888899999999999996431 112233334444444
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
..+|+++||++.... ....+..+++.+.+. .+++++|+||+|....
T Consensus 77 -~~ad~vl~vvD~~~~-~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 77 -EEADVILFVVDGREG-LTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE 122 (429)
T ss_pred -hhCCEEEEEEeCCCC-CCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence 357999999554321 223455666666653 4899999999998743
No 32
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.39 E-value=1.6e-12 Score=126.26 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=75.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-EEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
+|+|+|.+|||||||+|+|.+... .++..+..|...........+. .+.|+||||+.+.... ...+.....+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE----GKGLGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc----cCCchHHHHHHH
Confidence 689999999999999999998664 4444434455544444455666 9999999998643211 111112222222
Q ss_pred hcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~-t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|++++.. ........+.+.+.+........|.++|+||+|+..
T Consensus 77 --~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 77 --ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred --HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 246999999655433 110011123334443321112478999999999864
No 33
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=4.9e-12 Score=121.76 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=81.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHH--HHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRK--IMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~--i~~~ik 243 (791)
+++|+++|.+|+||||++|+|++.........+++|...........+.++.+|||||+.+..... ...+. ....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~e~~~~~~~~- 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVE-EGIEKYSVLRTL- 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchh-ccHHHHHHHHHH-
Confidence 479999999999999999999998766666555566666556667788899999999997652110 00111 11111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++.+.... ..+..+++.+... ..++++|+||+|+..
T Consensus 80 ~~~--~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 80 KAI--ERADVVLLVIDATEGIT-EQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HHH--hhcCeEEEEEeCCCCcc-hhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 122 36799999965543321 1222333333221 379999999999874
No 34
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.39 E-value=3.4e-12 Score=142.56 Aligned_cols=130 Identities=25% Similarity=0.263 Sum_probs=91.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.-+++|+|-||||||||+|.+.-.++ .+..++.+|+.....+....-..+.+|||||+.|....+ .|.-.+.+|...
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd--rN~IEmqsITAL 244 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED--RNIIEMQIITAL 244 (620)
T ss_pred cCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhh--hhHHHHHHHHHH
Confidence 46999999999999999999985543 344554455555555555556689999999999986542 333333444332
Q ss_pred HhcCCCCEEEEEEeccCccCC--CCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS 303 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~--~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~ 303 (791)
. .-..+|||+++++..... .....+++.|+..|- .+++|+|+||+|...|++.
T Consensus 245 A--HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa---NK~~IlvlNK~D~m~~edL 299 (620)
T KOG1490|consen 245 A--HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA---NKVTILVLNKIDAMRPEDL 299 (620)
T ss_pred H--HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc---CCceEEEeecccccCcccc
Confidence 2 112589999888865432 234578888888885 4799999999999988763
No 35
>PRK11058 GTPase HflX; Provisional
Probab=99.36 E-value=8.9e-12 Score=141.23 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=77.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-EEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.+|+|+|.||||||||+|+|++.+.+ +.....+|.+.......+.+. +++|+||||+... . ....++.+...
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-l-----p~~lve~f~~t 270 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-L-----PHDLVAAFKAT 270 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-C-----CHHHHHHHHHH
Confidence 58999999999999999999998866 444445666665555555554 8999999999432 1 11122223222
Q ss_pred Hhc-CCCCEEEEEEeccCccCCCCcHHHH-HHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRR-SPPDIVLYFERLDLISMGFSDFPLL-KLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~-~~~dvVLlV~~ld~~t~~~~D~~ll-k~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+.. ..+|++|+|++.+.... ..+...+ +.+... +. ...|+++|+||+|+.
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~-~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRV-QENIEAVNTVLEEI-DA-HEIPTLLVMNKIDML 322 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccH-HHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCC
Confidence 221 36899999965543321 1121222 223332 21 147899999999986
No 36
>PRK15494 era GTPase Era; Provisional
Probab=99.34 E-value=8.3e-12 Score=137.58 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=82.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|+|...+.++....+|+.........++.+++|+||||+.+... .......+....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~~ 127 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCAWS 127 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHHHH
Confidence 34699999999999999999999998877766545555555555677889999999999965421 112223333333
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+ ..+|+++||++.... ....+..+++.+... ..+.++|+||+|+.
T Consensus 128 ~l--~~aDvil~VvD~~~s-~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 128 SL--HSADLVLLIIDSLKS-FDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred Hh--hhCCEEEEEEECCCC-CCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 33 467999999543221 112233444444432 35778899999974
No 37
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.34 E-value=2.7e-11 Score=122.57 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=73.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-EEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
++|+|+|.+|||||||+|.|++......+. ...|.........+.+. .++|+||||+.+.... ...+.....+ ..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~-~~ 117 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQ-LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTL-EE 117 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCc-cceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHH-HH
Confidence 799999999999999999999976433222 23343443333344444 8999999999653211 1111111111 11
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ ..+|++++|++++.... ..+. .+.+.+... +. ...++++|+||+|+..
T Consensus 118 ~--~~~d~ii~v~D~~~~~~-~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 118 V--AEADLLLHVVDASDPDY-EEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred H--hcCCeEEEEEECCCCCh-hhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence 2 35799999966543321 1112 222333332 21 1378999999999864
No 38
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=1.1e-11 Score=140.12 Aligned_cols=125 Identities=21% Similarity=0.230 Sum_probs=87.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccch-hhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV-KRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~-~~n~~i~~~ik 243 (791)
..++|+|+|.+|+|||||+|+|++.+...++..+++|.+........++..+.|+||||+........ .........+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~- 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL- 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH-
Confidence 46999999999999999999999999888887777777777777778899999999999976432110 0000111122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+++ ..+|++++|++.... ....+..++..+.+. .+++++|+||+|+.
T Consensus 251 ~~~--~~ad~~ilViD~~~~-~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 251 KAI--ERADVVLLVIDATEG-ITEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred HHH--HHCCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 233 356999999665432 222344555554432 47999999999986
No 39
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=1.3e-11 Score=139.53 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=88.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+|+|.+|||||||+|+|++...+.+...+++|.+.......+.|..+.||||||+.+... .....+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHHHH
Confidence 489999999999999999999998887877777787777777888999999999999976311 11222333333334
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|++|||++.... ....+..+.+.+.+. ..|+++|+||+|..
T Consensus 79 --~~ad~il~vvd~~~~-~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 79 --EEADVILFVVDGRAG-LTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred --HhCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 467999999655432 223445566666654 48999999999964
No 40
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.31 E-value=3.1e-12 Score=124.56 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=74.7
Q ss_pred EEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcC
Q 003857 171 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 249 (791)
Q Consensus 171 LVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~ 249 (791)
|+|++|||||||+|+|.+... .+....++|..+......+. +.++.|+||||+.+.... .+.+...+...+ .
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~~--~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE----GRGLGNQFLAHI--R 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc----CCCccHHHHHHH--h
Confidence 589999999999999999876 44555556666655556677 899999999999653211 111222222223 3
Q ss_pred CCCEEEEEEeccCcc-----CCCCcH-HHHHHHHHHhcc-----cccccEEEEEeccCCCC
Q 003857 250 PPDIVLYFERLDLIS-----MGFSDF-PLLKLMTEVFGT-----AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 250 ~~dvVLlV~~ld~~t-----~~~~D~-~llk~L~~~fg~-----~i~k~vIVVLTK~D~l~ 299 (791)
.+|++++|++..... ....+. .....+...... ....|+++|+||+|+..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 469999996554331 001111 122222222110 12489999999999863
No 41
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=8.6e-12 Score=139.88 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=80.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.|+|||.||||||||+|+|++... +++..+.+|...........+ ..++|+||||+...... ...+...+.+.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~----~~~Lg~~~l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE----GAGLGIRFLKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc----hhhHHHHHHHHH
Confidence 799999999999999999998764 667776677667666666654 57999999999765321 122222222334
Q ss_pred hcCCCCEEEEEEeccCcc-CC--CCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLIS-MG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t-~~--~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+.+++++|+++.... .. .....+++.+......-..+|.++|+||+|+.
T Consensus 236 --~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 236 --ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred --HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 3569999996654221 10 11123344444321111247999999999986
No 42
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.31 E-value=1.5e-11 Score=124.98 Aligned_cols=119 Identities=21% Similarity=0.193 Sum_probs=75.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccC----CCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDA----FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~----~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+++|+|+|++|||||||+|+|+|......+. ...+|.....+.. -....+.++||||+.+... ..+..++.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~----~~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAF----PPDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccC----CHHHHHHH
Confidence 3789999999999999999999954332111 1112322222221 1235789999999986532 12222222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
+.....|++++|. +.. ....+..+++.+.+. .+++++|+||+|...+.
T Consensus 76 ----~~~~~~d~~l~v~--~~~-~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 76 ----MKFSEYDFFIIIS--STR-FSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred ----hCccCcCEEEEEe--CCC-CCHHHHHHHHHHHHh-----CCCEEEEEecccchhhh
Confidence 2224578888883 322 334566777777765 37899999999997654
No 43
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-11 Score=131.59 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=93.4
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHH--
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML-- 240 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~-- 240 (791)
....++|+|+|.||||||||.|.+.|..++.++.-..+|+........-+...++|+||||+...+.. ......+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~--r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH--RRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchh--hhHHHHHHhh
Confidence 34568999999999999999999999999999876566666666666777889999999999876431 11111111
Q ss_pred -HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 241 -SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 241 -~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
.....+ ..+|+|+.|.++.+ +......+++..+.++.. .|.|+|+||.|.+.+
T Consensus 147 q~~~~a~--q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 147 QNPRDAA--QNADCVVVVVDASA-TRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ 200 (379)
T ss_pred hCHHHHH--hhCCEEEEEEeccC-CcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence 111222 36799998866665 333455577888877743 789999999998743
No 44
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.31 E-value=1.1e-11 Score=118.50 Aligned_cols=115 Identities=15% Similarity=0.282 Sum_probs=75.9
Q ss_pred EEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCC
Q 003857 171 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSP 250 (791)
Q Consensus 171 LVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~ 250 (791)
|+|.+|||||||+|+|.+.. +.++..+++|.........+.+..+.|+||||+.+.... .....+. ..++....
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~---~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY--SEDEKVA---RDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC--ChhHHHH---HHHhcCCC
Confidence 58999999999999999976 445555555666666666778899999999999764221 1112222 22332247
Q ss_pred CCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 251 PDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 251 ~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+|++++|++..... .....+..+.+ ..+++++|+||+|+..
T Consensus 75 ~d~vi~v~d~~~~~---~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATNLE---RNLYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCcch---hHHHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 89999996554321 22233333332 2479999999999864
No 45
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.31 E-value=1.9e-11 Score=118.71 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=75.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+||||||++|+|++.... +......|..+........+.++.|+||||+.+.... ..+.-....+.. +.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~~-~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLE--ERNTIEMQAITA-LA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCcccc--CCchHHHHHHHH-HH
Confidence 7999999999999999999987643 3333334555555455567889999999999654221 111100111211 11
Q ss_pred cCCCCEEEEEEeccCccCC--CCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 248 RSPPDIVLYFERLDLISMG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~--~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...|+++||++++..... .....+++.+...+. ..|+++|+||+|+..
T Consensus 78 -~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 78 -HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred -hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 235889999655433210 111234445544431 479999999999863
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.30 E-value=2.1e-11 Score=137.47 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=86.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccch-hhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV-KRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~-~~n~~i~~~i 242 (791)
...++|+++|.+|+|||||+|+|++.+...++..+++|.+........++..+.|+||||+........ .......+.+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 345899999999999999999999998887777767777777777777899999999999976421100 0001111111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+++ ..+|++++|++.... ....+..++..+.+. ..++++|+||+|+.
T Consensus 250 -~~~--~~ad~~ilV~D~~~~-~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 -KAI--ERADVVLLVLDATEG-ITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred -HHH--HhCCEEEEEEECCCC-ccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 223 357999999655432 122344454444432 47999999999987
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=1.8e-11 Score=140.57 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=85.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|++|||||||+|+|++.+...++..+++|.+.......++|..+.|+||||+...... .........++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~--~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQ--ASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccc--cchHHHHHHHHH
Confidence 458999999999999999999999987777777677777766677788999999999998643111 011122222221
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
......+|++++|++++.. ....+..++..+.. ..+++|+|+||+|+.
T Consensus 288 ~~~i~~ad~vilV~Da~~~-~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEP-ISEQDQRVLSMVIE-----AGRALVLAFNKWDLV 335 (472)
T ss_pred HHHHhcCCEEEEEEeCCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence 1111467999999665432 11233444444433 247999999999986
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=2.3e-11 Score=139.68 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=87.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+|||.+|||||||+|+|++...+.+...++.|++.......+.|..+.|+||||+.... . .....+......++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~-~--~~~~~~~~~~~~~~ 115 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA-K--GLQASVAEQAEVAM 115 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc-h--hHHHHHHHHHHHHH
Confidence 68999999999999999999998877777766677777777778899999999999986321 0 11223333333334
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|++|+|++.+... ...+..+++.+... .+|+++|+||+|+.
T Consensus 116 --~~aD~il~VvD~~~~~-s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 --RTADAVLFVVDATVGA-TATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred --HhCCEEEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 3579999996665321 12344555555542 48999999999975
No 49
>COG2262 HflX GTPases [General function prediction only]
Probab=99.29 E-value=6.8e-11 Score=130.63 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=97.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-CeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..|++||.||+||||++|+|.|.....-+.. ..|-+.......+. |..++|.||.||.+. ....+..+++..
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L-FATLdpttR~~~l~~g~~vlLtDTVGFI~~------LP~~LV~AFksT 265 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQL-FATLDPTTRRIELGDGRKVLLTDTVGFIRD------LPHPLVEAFKST 265 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccc-cccccCceeEEEeCCCceEEEecCccCccc------CChHHHHHHHHH
Confidence 6999999999999999999998877655433 23333222222333 799999999999753 356677788877
Q ss_pred HhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCC-----CCC--ccchHHHHhhC
Q 003857 246 IRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS-----SGY--PFSYESYVTQC 317 (791)
Q Consensus 246 l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~-----~~~--~~~~e~~i~q~ 317 (791)
+... .+|++|.|++.+............+.|.++ |.. ..|+|+|+||+|.+.+... ... +..+...-..+
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~g 343 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEG 343 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcC
Confidence 7654 789999995554432111111222233332 322 3799999999998855430 011 12222222345
Q ss_pred hHHHHHHHHHHhc
Q 003857 318 TDLVQQRIHQAVS 330 (791)
Q Consensus 318 ~~~lq~~I~q~~~ 330 (791)
.+.+++.|.+.+.
T Consensus 344 l~~L~~~i~~~l~ 356 (411)
T COG2262 344 LDLLRERIIELLS 356 (411)
T ss_pred HHHHHHHHHHHhh
Confidence 6778888877655
No 50
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.28 E-value=2.1e-12 Score=142.99 Aligned_cols=222 Identities=18% Similarity=0.133 Sum_probs=121.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhC-----CCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFD-----QTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG-----~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
+++|+|+|.+|+|||||||+|.| ...+.++.. .+|.+...+.. ..--+++++|.||++..... ....++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~----~~~Yl~ 108 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFP----PEEYLK 108 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE--SS-TTEEEEEE--GGGSS------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCC----HHHHHH
Confidence 38999999999999999999977 233444433 45666666653 22346899999999866432 233333
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhChHH
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDL 320 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~~~ 320 (791)
.+ .....|+++++ .+. +....|..+++.+++. ++++++|-||+|.....+....|..+++ ++-...
T Consensus 109 ~~----~~~~yD~fiii--~s~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~--e~~L~~ 174 (376)
T PF05049_consen 109 EV----KFYRYDFFIII--SSE-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKPRTFNE--EKLLQE 174 (376)
T ss_dssp HT----TGGG-SEEEEE--ESS-S--HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-STT--H--HTHHHH
T ss_pred Hc----cccccCEEEEE--eCC-CCchhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCCcccCH--HHHHHH
Confidence 32 22467888776 332 2334677888888876 5899999999996211111111222221 111234
Q ss_pred HHHHHHHHhcccCCcch-hhhhhcCc-----cccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccCC
Q 003857 321 VQQRIHQAVSDARLENQ-VLLVENHP-----QCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELGP 394 (791)
Q Consensus 321 lq~~I~q~~~d~~~~~p-v~lVen~P-----~c~~n~~ge~vLP~~~~W~~~L~~~C~s~ki~~eA~~~lk~~~~~~~~~ 394 (791)
+++.+.+.+....+..| +-+|.+.. |+.-...-++.||....-.-.+.+..++..++++....++.+.......
T Consensus 175 IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~~Al~ 254 (376)
T PF05049_consen 175 IRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWLEALK 254 (376)
T ss_dssp HHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444443 23344332 1112123345688877777777788888889999999999988766555
Q ss_pred CCCCCCCCchHHH
Q 003857 395 LGNTRVPSMPHLL 407 (791)
Q Consensus 395 ~~~~~~~plp~l~ 407 (791)
.+.....|+|++.
T Consensus 255 s~~~a~iP~~g~~ 267 (376)
T PF05049_consen 255 SAAVATIPVPGLS 267 (376)
T ss_dssp T--BSS-CCCSS-
T ss_pred HHHhccCCCcccc
Confidence 4555777787765
No 51
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=2.3e-11 Score=134.00 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=81.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..|+|||.||||||||+|+|.+... .++.++.+|..+......+ ++.+++|+||||+.+... ....+...+.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~----~~~gLg~~flrh 233 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS----EGAGLGHRFLKH 233 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC----ccccHHHHHHHH
Confidence 3799999999999999999998653 4566656677776666666 567899999999976532 122333333344
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ .+.+++++|++++.... ..+. .+.+.|...-..-..+|.++|+||+|+..
T Consensus 234 i--e~a~vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 234 I--ERTRLLLHLVDIEAVDP-VEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred h--hhcCEEEEEEcCCCCCC-HHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 4 35689999966553221 1122 23333333211112479999999999863
No 52
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.25 E-value=9.5e-11 Score=117.06 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=76.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|+|.+|||||||+|+|++.. ...++...++|..+..+.. +.++.|+||||+....... ...+.....+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~-~~~~~~~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSK-EEKEKWQKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCc-hHHHHHHHHHH
Confidence 45799999999999999999999875 4555544455555544332 5789999999987543211 11222223333
Q ss_pred HHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++... ..+++++|++.+.. ....+..+++.+.. .+.++++++||+|+..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~-~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHP-LKELDLQMIEWLKE-----YGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHhCccceEEEEEEecCCC-CCHHHHHHHHHHHH-----cCCcEEEEEECcccCC
Confidence 344322 45677777443322 11222334444432 2478899999999863
No 53
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.23 E-value=5.8e-11 Score=111.04 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=76.3
Q ss_pred EEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcC
Q 003857 171 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 249 (791)
Q Consensus 171 LVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~ 249 (791)
|+|++|+||||++|+|++......+...+.|........... +..+.++||||+.+.... .......+..++ .
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~----~~~~~~~~~~~~--~ 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL----GREREELARRVL--E 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc----hhhHHHHHHHHH--H
Confidence 589999999999999999877766666566666666555554 779999999999876322 111112233333 3
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 250 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 250 ~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
.+|+++||++...... ..... .+.... ....++++|+||+|...+
T Consensus 75 ~~d~il~v~~~~~~~~--~~~~~--~~~~~~--~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 75 RADLILFVVDADLRAD--EEEEK--LLELLR--ERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hCCEEEEEEeCCCCCC--HHHHH--HHHHHH--hcCCeEEEEEEccccCCh
Confidence 5799999965554321 11111 111111 124789999999998743
No 54
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.23 E-value=1.3e-10 Score=111.56 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=69.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc-C-CCCceeEEEEEEeEEC-CeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD-A-FQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs-~-~~~~Tt~~~~~~~~~~-G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+||||||++|+|.+....... . ....|.........+. +..+.++||||.... ...+.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-----------~~~~~ 69 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-----------IKNML 69 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-----------HHHHH
Confidence 37999999999999999999986433221 1 1223444444444555 789999999997311 12222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|++++.... ......+..+.. .+ .+++++|+||+|+.
T Consensus 70 ~~~--~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~ 117 (164)
T cd04171 70 AGA--GGIDLVLLVVAADEGIM-PQTREHLEILEL-LG---IKRGLVVLTKADLV 117 (164)
T ss_pred hhh--hcCCEEEEEEECCCCcc-HhHHHHHHHHHH-hC---CCcEEEEEECcccc
Confidence 223 36799999966643111 122233332222 22 14899999999986
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.23 E-value=7.4e-11 Score=141.76 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=88.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+|+|++|||||||+|+|+|...+.++..++.|++.......+.+..+.||||||+..... .....+......++
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~ 352 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE---GIDSAIASQAQIAV 352 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---cHHHHHHHHHHHHH
Confidence 589999999999999999999988888877767777777777888999999999999864211 12233334444444
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|++|||++.... ....+..+++.+... .+|+++|+||+|+.
T Consensus 353 --~~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 353 --SLADAVVFVVDGQVG-LTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred --HhCCEEEEEEECCCC-CCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 367999999555321 223344566666542 58999999999975
No 56
>PRK04213 GTP-binding protein; Provisional
Probab=99.23 E-value=1e-10 Score=117.97 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=72.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|+|.. +.++..+++|.....+ .+. ++.++||||++....-.....+.....+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 34799999999999999999999876 3444443344433332 222 689999999865321111112233232333
Q ss_pred HHhc--CCCCEEEEEEeccCccC---C-------CCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRR--SPPDIVLYFERLDLISM---G-------FSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~--~~~dvVLlV~~ld~~t~---~-------~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++.. ..++++++|++.+.... + ..+..+++.+.. ...|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence 3321 35678888865543210 0 011223333332 247999999999975
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.22 E-value=6.9e-11 Score=142.03 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=86.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
...+|+|+|.+|||||||+|+|++.+...++..+++|.+.......++|.++.|+||||+...... .........++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~--~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHK--LTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCccc--chhHHHHHHHHH
Confidence 357999999999999999999999987777777777777777777788999999999998653211 111122222221
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
......+|++++|++.+.. ....+..++..+.+ ..+++++|+||+|+.
T Consensus 527 ~~~i~~advvilViDat~~-~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~ 574 (712)
T PRK09518 527 QAAIERSELALFLFDASQP-ISEQDLKVMSMAVD-----AGRALVLVFNKWDLM 574 (712)
T ss_pred HHHhhcCCEEEEEEECCCC-CCHHHHHHHHHHHH-----cCCCEEEEEEchhcC
Confidence 1111457999999655432 11233444444433 248999999999986
No 58
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=7e-11 Score=133.70 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=80.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.|+|||.||||||||||+|++.... ++.++.+|..+......+. +..++|+||||+..... ....+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~----~~~gLg~~fLrhi 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS----EGVGLGHQFLRHI 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCccccc----ccchHHHHHHHHH
Confidence 8999999999999999999987643 4556566666666655665 78999999999976421 1223333333333
Q ss_pred hcCCCCEEEEEEeccCcc-CCC-Cc-HHHHHHHHHHhcccccccEEEEEeccCC
Q 003857 247 RRSPPDIVLYFERLDLIS-MGF-SD-FPLLKLMTEVFGTAIWFNTILVMTHSSS 297 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t-~~~-~D-~~llk~L~~~fg~~i~k~vIVVLTK~D~ 297 (791)
.+.+++++|++++... ... .+ ..+.+.|......-..+|.+||+||+|+
T Consensus 235 --er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 --ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred --hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 3569999997665331 111 11 2333444443221235899999999996
No 59
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.20 E-value=9.6e-11 Score=128.79 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=79.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..|+|||.+|||||||+|+|.+... .++.++.+|..+......+.+ ..++|+||||+.+.... ...+...+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~----~~gLg~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE----GAGLGHRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc----cccHHHHHHHH
Confidence 4899999999999999999998653 355555566666666666666 89999999999754221 22232333333
Q ss_pred HhcCCCCEEEEEEeccCccC--CCCcH-HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISM--GFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~--~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ .+.+++++|++++.... ...+. .+.+.+...-..-..+|.++|+||+|+.
T Consensus 233 i--erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 233 I--ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred H--HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 3 34689999966654311 00111 2223333321111257999999999986
No 60
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=1.2e-10 Score=133.58 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=82.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
..|+|||.||||||||||+|.+.... ++.++.+|..+......+.+.+++|+||||+.+... ....+...+.+++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas----~g~gLg~~fLrhi 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS----EGKGLGLDFLRHI 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccc----hhhHHHHHHHHHH
Confidence 48999999999999999999987543 456656666677777777889999999999975421 1223323333334
Q ss_pred hcCCCCEEEEEEeccCcc--C-CCCcHH-HHHHHHHHhc---------ccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLIS--M-GFSDFP-LLKLMTEVFG---------TAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t--~-~~~D~~-llk~L~~~fg---------~~i~k~vIVVLTK~D~l 298 (791)
.+.|++++|++++... . ...+.. +.+.|..... .-..+|.+||+||+|+.
T Consensus 235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 3469999996654321 1 111222 2234433321 12358999999999975
No 61
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.18 E-value=2.2e-10 Score=138.27 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=85.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCcccc-c-hhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR-N-VKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~-~-~~~n~~i~~~ik 243 (791)
.++|+++|.+||||||++|+|+|... .++..+++|.+.......+++.++.++||||..+-... . ....+.+ .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i---~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---AC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH---HH
Confidence 36899999999999999999999764 56777777887777777888999999999999864321 0 0112222 23
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++....+|++++|++.+ ... ....+...+.+. ..|+++|+||+|...
T Consensus 79 ~~l~~~~aD~vI~VvDat--~le-r~l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 79 HYILSGDADLLINVVDAS--NLE-RNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred HHHhccCCCEEEEEecCC--cch-hhHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 344445789999995443 321 122333444332 589999999999863
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.17 E-value=2.7e-10 Score=109.74 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=71.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.+|+++|++|||||||+|++++....... .+..+.+.......+.+ ..+.++||||.... . ..+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~---~~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY-QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF--------R---SLIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccC-CCceeeeEEEEEEEECCEEEEEEEEECCCcHHH--------H---HHHHH
Confidence 37999999999999999999987655432 12233344444445555 46899999996211 1 12233
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|.+++....-......+..+....+. ..|+++|.||+|+.
T Consensus 69 ~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~ 118 (161)
T cd01861 69 YI--RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLS 118 (161)
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence 34 3569999997665432101111333333333222 47899999999986
No 63
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.17 E-value=3.3e-10 Score=108.19 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=73.1
Q ss_pred EEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 169 ILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
|+|+|.+|+|||||+|+|++.. ....+.....|..+..+. .. ..++++||||+....... ...+.....+..++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--VN-DKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE--cc-CeEEEecCCCccccccCH-HHHHHHHHHHHHHHH
Confidence 7999999999999999999533 333333333444333322 22 389999999998753211 122333333444443
Q ss_pred cC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 248 RS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 248 ~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.. ..+.+++|++.+... ...+..+++.+... ..++++|+||+|...
T Consensus 78 ~~~~~~~~~~v~d~~~~~-~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGP-TEIDLEMLDWLEEL-----GIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCC-CHhHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 32 457788885554321 12334455555543 378999999999864
No 64
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.15 E-value=2.3e-10 Score=108.05 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=69.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE--EEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~--~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
++|+++|.+||||||++|.|++....... ..|.. ........ ....+.++||||.... . ...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~---~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY---KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF--------R---SIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc---CCceeeeeEEEEEEECCEEEEEEEEecCChHHH--------H---HHH
Confidence 48999999999999999999987655441 11222 22222233 3478899999998321 1 122
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++...........+..+..... ...|+++|+||+|..
T Consensus 67 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 67 PSYY--RGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 3334 357999999666542210111123333333321 247999999999986
No 65
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.15 E-value=3.6e-10 Score=109.38 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=70.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE---CCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~---~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
+|+|+|.+|+||||++|+|.+...... .....|.......... .+.++.++||||.... .... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~---~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF--------TNMR---AR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH--------HHHH---HH
Confidence 599999999999999999997654432 2223444444344444 3789999999997422 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|++.+... .......+..+.. ...|+++|+||+|+.
T Consensus 70 ~~--~~~d~il~v~d~~~~~-~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 70 GA--SLTDIAILVVAADDGV-MPQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred HH--hhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 22 3569999996665321 1122233444332 247899999999976
No 66
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.14 E-value=3.2e-10 Score=109.21 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=70.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|++++...... ..++. .+.......+. ...+.|+||||.... ..+ ..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~---~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------LEV---RN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHHH--------HHH---HH
Confidence 4899999999999999999998764321 11211 12222222333 457889999998321 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc---cccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT---AIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~---~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|.+++...........+..+.+.... ....|+++|.||+|+.
T Consensus 68 ~~~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 68 EFY--KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHh--ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 223 4579999996655432111122344444444332 1347899999999986
No 67
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.3e-10 Score=133.06 Aligned_cols=123 Identities=18% Similarity=0.305 Sum_probs=93.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+++|.|||||||++|+|+|.+ ..++.+++.|.+..+.....+|.++.+||.||.++-... ..++++ .++++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~--S~DE~V---ar~~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY--SEDEKV---ARDFL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC--CchHHH---HHHHH
Confidence 579999999999999999999965 667889899999999999999999999999999986432 334443 45667
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS 303 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~ 303 (791)
.+.+||+|+-| +|+.....+- .+--++.+ .+.|+++++|++|.+...+.
T Consensus 78 l~~~~D~ivnV--vDAtnLeRnL-yltlQLlE-----~g~p~ilaLNm~D~A~~~Gi 126 (653)
T COG0370 78 LEGKPDLIVNV--VDATNLERNL-YLTLQLLE-----LGIPMILALNMIDEAKKRGI 126 (653)
T ss_pred hcCCCCEEEEE--cccchHHHHH-HHHHHHHH-----cCCCeEEEeccHhhHHhcCC
Confidence 77899999999 6665432111 12222233 35899999999999865553
No 68
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.14 E-value=5.8e-10 Score=109.64 Aligned_cols=113 Identities=16% Similarity=0.057 Sum_probs=71.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccC---------------CCCceeEEEEEEeEECCeEEEEEeCCCCCCccccch
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 232 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~---------------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~ 232 (791)
+|+|+|.+|+|||||+|+|++........ ....|...........+..++|+||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 58999999999999999998875543210 1122333344445566889999999998532
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 233 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 233 ~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.. ....++ ..+|++++|++..... ...+...+..+.. ...++++|+||+|+..
T Consensus 76 --~~----~~~~~~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 --SS----EVIRGL--SVSDGAILVVDANEGV-QPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred --HH----HHHHHH--HhcCEEEEEEECCCCC-cHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 11 122223 2469999996554321 1123334433332 2489999999999885
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.11 E-value=1e-09 Score=107.67 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=70.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
-++|+|+|.+|||||||+|++.+......... ..+.+.......+.+ ..+.|+||||... ......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 47999999999999999999998765443222 112222222233444 5789999999521 111123
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|.+++...........+..+..... ...|+++|.||.|+..
T Consensus 72 ~~~--~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 72 SYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred HHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 333 357999999666532211111123333333221 2378999999999863
No 70
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.11 E-value=9e-11 Score=114.74 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=67.9
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEE----------------------------------------
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK---------------------------------------- 208 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~---------------------------------------- 208 (791)
|+|+|..++|||||||+|+|.....++.. ++|..+..+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999987665433 5555433222
Q ss_pred ----------------eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHH
Q 003857 209 ----------------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPL 272 (791)
Q Consensus 209 ----------------~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~l 272 (791)
.......+.||||||+.+... ... +.+.+++ ...|+||||.+...... ..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~----~~~---~~~~~~~--~~~d~vi~V~~~~~~~~-~~~~~- 148 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNS----EHT---EITEEYL--PKADVVIFVVDANQDLT-ESDME- 148 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHT----TTS---HHHHHHH--STTEEEEEEEETTSTGG-GHHHH-
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchh----hhH---HHHHHhh--ccCCEEEEEeccCcccc-hHHHH-
Confidence 001123589999999976421 122 3344555 45699999965554221 12222
Q ss_pred HHHHHHHhcccccccEEEEEecc
Q 003857 273 LKLMTEVFGTAIWFNTILVMTHS 295 (791)
Q Consensus 273 lk~L~~~fg~~i~k~vIVVLTK~ 295 (791)
.+.+.... ....+++|+||+
T Consensus 149 --~l~~~~~~-~~~~~i~V~nk~ 168 (168)
T PF00350_consen 149 --FLKQMLDP-DKSRTIFVLNKA 168 (168)
T ss_dssp --HHHHHHTT-TCSSEEEEEE-G
T ss_pred --HHHHHhcC-CCCeEEEEEcCC
Confidence 33332221 235699999995
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.11 E-value=9.1e-10 Score=107.16 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=70.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|+|||||+|++.+........ ...+.+.......+++ ..+.|+||||... ... ...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~---~~~ 70 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER--------FRT---ITQ 70 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHH--------HHH---HHH
Confidence 4899999999999999999998654322211 1111223333344555 4789999999621 111 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++....-......+..+.... ....|+++|.||+|+..
T Consensus 71 ~~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 71 SYY--RSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHh--ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 233 35699999976654321111123444444322 12468999999999863
No 72
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.11 E-value=4.1e-10 Score=109.27 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=69.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCccc---ccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTE---TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~---vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
+|+|+|.+|+|||||+|.|.+..... .......|.........+.+..+.++||||.... ... ...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~---~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL--------RSL---WDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh--------HHH---HHH
Confidence 58999999999999999998753221 1111122333333445567899999999998432 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|++..... ........+...+.. ....|+++|+||+|+.
T Consensus 70 ~~--~~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 70 YY--AECHAIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred Hh--CCCCEEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 33 4679999995543321 111233333333321 1247999999999975
No 73
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.10 E-value=6.1e-10 Score=107.46 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=68.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-E--EEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-C--IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~--~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|++|||||||+|++++....... .+++. . ...+.....+..+.|+||||... .... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~--------~~~~---~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQ--ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER--------YRSL---AP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCchHH--------HHHH---HH
Confidence 79999999999999999999987754421 11111 1 12222222346788999999621 1111 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ...|++++|++++....-......+..+..... ...++++|.||+|+.
T Consensus 69 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~ 119 (163)
T cd01860 69 MYY--RGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLE 119 (163)
T ss_pred HHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence 223 356999999666533211112233444444322 246799999999976
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.10 E-value=7.1e-10 Score=106.91 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=69.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|||||||+|++++... +....+++.........+.+ ..+.++||||..+. ..+. ..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~---~~ 69 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF--------SAMR---EQ 69 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch--------hHHH---HH
Confidence 7999999999999999999997653 23333444433333344555 46889999997432 1121 22
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ...|++++|++++....-......+..+..... ....|+++|.||+|+.
T Consensus 70 ~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 70 YM--RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLE 120 (164)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccc
Confidence 33 246899999666543210011122233333221 1246999999999986
No 75
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.10 E-value=1e-09 Score=105.59 Aligned_cols=117 Identities=20% Similarity=0.119 Sum_probs=69.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|++|+|||||+|++++....... ....+.+.......+.+ ..+.++||||.... . .....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~---~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY-KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF--------R---SITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------H---HHHHH
Confidence 58999999999999999999987643221 11222233333445555 57889999996311 1 12223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|+++............+..+..... -..|+++|.||+|+..
T Consensus 69 ~~--~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 69 YY--RGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred Hh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 33 357999999665432210001112223322221 2479999999999763
No 76
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.09 E-value=3.6e-10 Score=115.82 Aligned_cols=113 Identities=17% Similarity=0.089 Sum_probs=70.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccC------------------------------CCCceeEEEEEEeEECCeEEE
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNGIKVT 217 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~------------------------------~~~~Tt~~~~~~~~~~G~~l~ 217 (791)
+|+|+|.+|+|||||+|+|+....+++.. -.+.|.+.......+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998755443310 033455555566677899999
Q ss_pred EEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCC
Q 003857 218 FIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSS 297 (791)
Q Consensus 218 LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~ 297 (791)
|+||||..+. . ..+...+ ..+|++++|++..... ...+...+..+ ..++ .+++|+|+||+|+
T Consensus 81 liDTpG~~~~-------~----~~~~~~~--~~ad~~llVvD~~~~~-~~~~~~~~~~~-~~~~---~~~iIvviNK~D~ 142 (208)
T cd04166 81 IADTPGHEQY-------T----RNMVTGA--STADLAILLVDARKGV-LEQTRRHSYIL-SLLG---IRHVVVAVNKMDL 142 (208)
T ss_pred EEECCcHHHH-------H----HHHHHhh--hhCCEEEEEEECCCCc-cHhHHHHHHHH-HHcC---CCcEEEEEEchhc
Confidence 9999997321 1 1122223 3579999996554321 11222223322 2222 1457889999998
Q ss_pred C
Q 003857 298 T 298 (791)
Q Consensus 298 l 298 (791)
.
T Consensus 143 ~ 143 (208)
T cd04166 143 V 143 (208)
T ss_pred c
Confidence 6
No 77
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.09 E-value=1.6e-09 Score=124.59 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHhhcCCCh--hhHHHHHHHhhh---hHHH-HHHHHHHhHHH----HhhhhhhhHHH
Q 003857 82 QNTDDKMMDPLVKIEDLQVKFLRLLQRFGQSQ--DNILAVKVLYRL---HLAT-LIRAGESDMKM----VNLRSDRTRAI 151 (791)
Q Consensus 82 ~~~~~e~k~~~~kIe~lR~~Ll~l~~rLg~~~--ed~lva~vL~rl---~lae-~i~~~~~~l~~----~~~~~~~~~~l 151 (791)
+..+.+..+|+++|+.+|..|.+.+..+.+.. .+.+...+++++ ++.. ..+.+.+.+.. ...+......+
T Consensus 256 ~~~~~~l~~m~~El~~lR~lle~q~~~l~~~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L 335 (559)
T PRK12727 256 PQNDEELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLL 335 (559)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 34445677899999999999999999886643 245555554444 2211 11111111111 01111112233
Q ss_pred HHHhhhcCCCCCCCceEEEEEeecCCchHHHHhHhhC
Q 003857 152 AREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 152 a~~~e~~g~~~~~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
+..+.....+.....-.|+|+|++|+|||||+.+|..
T Consensus 336 ~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 336 SKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred HHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3333333333444567999999999999999999964
No 78
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.08 E-value=2.1e-09 Score=100.60 Aligned_cols=117 Identities=19% Similarity=0.116 Sum_probs=68.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|+|||||+|+|++.. .........|..........++ ..+.++||||..+. .......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~-- 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY--------RAIRRLY-- 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc--------hHHHHHH--
Confidence 699999999999999999999987 5544443444455554456677 78999999995332 1111111
Q ss_pred HHhcCCCCEEEEEEeccCc--cCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLI--SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~--t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ...+.++++.++... +...........+...... ..|+++|+||+|...
T Consensus 71 -~--~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 71 -Y--RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred -H--hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 1 122344444333222 0000111233333333221 478999999999863
No 79
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.08 E-value=1.2e-09 Score=114.49 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=60.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+|+|||||+|+|.|... .+..++.+|.++......+.+.++.++||||+.+.... .......+..++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~----~~~~~~~~l~~~- 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD----GKGRGRQVIAVA- 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCccccccc----chhHHHHHHHhh-
Confidence 789999999999999999999763 34555566666766666788999999999998654211 112222222233
Q ss_pred cCCCCEEEEEEec
Q 003857 248 RSPPDIVLYFERL 260 (791)
Q Consensus 248 ~~~~dvVLlV~~l 260 (791)
..+|++++|++.
T Consensus 76 -~~ad~il~V~D~ 87 (233)
T cd01896 76 -RTADLILMVLDA 87 (233)
T ss_pred -ccCCEEEEEecC
Confidence 357999998554
No 80
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.08 E-value=1.4e-09 Score=105.51 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=69.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|++|||||||+|++++....... .+..+.+.........+ ..+.|+||||.... ... ...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~---~~~ 71 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY--------RAI---TSA 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HHH---HHH
Confidence 79999999999999999999987644322 12233333333444555 46889999997321 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ...+++++|.++........-...+..+..... ...|+++|.||+|+.
T Consensus 72 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 72 YY--RGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLR 121 (165)
T ss_pred HH--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence 33 356889998666432110011123333333221 137899999999976
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.08 E-value=1.3e-09 Score=105.25 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=69.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|+|++........ +..+.+.......+.+ ..+.|+||||.... . .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~---~~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ-HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF--------R---SVTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCEEEEEEEEECcchHHH--------H---HhHHH
Confidence 489999999999999999999765433221 1122223223333444 57889999997321 1 11223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++.......-...+..+..... ...|+++|.||+|+..
T Consensus 69 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 119 (161)
T cd04113 69 YY--RGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD 119 (161)
T ss_pred Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence 33 357999999766543211111123333333322 2478999999999864
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.07 E-value=9.8e-10 Score=106.02 Aligned_cols=118 Identities=18% Similarity=0.107 Sum_probs=68.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc-CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
++|+|+|++||||||++|+|++....... .....+.....+........+.|+||||.... . .....+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~---~~~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF--------R---TLTSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh--------h---hhhHHH
Confidence 48999999999999999999987543321 11111122222222222357899999996321 1 111223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ ...|++++|.+++...........+..+.+.. .....++++|.||+|+.
T Consensus 70 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 70 Y--RGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred h--CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence 3 35699999966653321111112333333332 22357889999999987
No 83
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.07 E-value=2.6e-09 Score=107.77 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=68.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccC---------------CCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~---------------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~ 231 (791)
.+|+++|.+|||||||+|+|++........ ..+.|..........++..+.|+||||..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 489999999999999999998632111100 0122333444455667889999999998432
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
......++ ..+|++++|++...... .....++..+.. ...|.++|+||+|+.
T Consensus 79 -------~~~~~~~~--~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 79 -------GGEVERVL--SMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRP 130 (194)
T ss_pred -------HHHHHHHH--HhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 11222333 35699999966543211 111122222221 247899999999986
No 84
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.07 E-value=8.2e-10 Score=107.81 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=70.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE--EEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~--~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|||||||+|++++...... ..+++.. ............+.++||||.... ..... .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~---~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQF--------PAMQR---L 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCcchheEEEEEEECCEEEEEEEEECCCCCcc--------hHHHH---H
Confidence 6899999999999999999997653221 1122111 111222223467899999998532 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc-ccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~-i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++....-......++.+.+..+.. ...|+++|.||+|+..
T Consensus 69 ~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SI--SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 22 35689999966654321111223444555544322 3479999999999863
No 85
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.06 E-value=2.2e-09 Score=105.81 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=71.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+++|.+|||||||+|+|++....... + |.........+++..+.++||||.... ... ...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~---~-t~g~~~~~~~~~~~~l~l~D~~G~~~~--------~~~---~~~ 77 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTIS---P-TLGFQIKTLEYEGYKLNIWDVGGQKTL--------RPY---WRN 77 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcC---C-ccccceEEEEECCEEEEEEECCCCHHH--------HHH---HHH
Confidence 4589999999999999999999987443221 2 222222334456889999999997421 111 223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|++.+.... .......+...+.. ....|+++|+||+|+.
T Consensus 78 ~~--~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 78 YF--ESTDALIWVVDSSDRLR---LDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred Hh--CCCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 34 36799999965544311 11222333333221 1247999999999986
No 86
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.06 E-value=1.9e-09 Score=108.02 Aligned_cols=113 Identities=13% Similarity=0.175 Sum_probs=71.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+++|.+||||||++|.+.+.....+. .|.........+++.++.++||||.... ...+ ..+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~---~~~ 81 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQA--------RRLW---KDY 81 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHH--------HHHH---HHH
Confidence 379999999999999999999987544321 2333333344567899999999998421 1122 233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
+ ..+|+++||++...... .......+.+.+.. ....|+++|+||+|+.
T Consensus 82 ~--~~ad~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 82 F--PEVNGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred h--CCCCEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 4 46799999955533210 11222233333321 1247999999999974
No 87
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.05 E-value=1.6e-09 Score=103.75 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=68.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|++++..... ...+++.........+++. .+.++||||.... ..+. ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~l~---~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMR---DQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcch--------HHHH---HH
Confidence 689999999999999999999765322 2223333333333445554 5778999997422 1111 22
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...|++++|++++.... ..+. ..+..+.+... ....|+++|.||+|+..
T Consensus 69 ~~--~~~~~~i~v~~~~~~~s-~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 69 YM--RTGEGFLCVFAINSRKS-FEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HH--hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 33 24688888866654321 0111 22233333221 12478999999999863
No 88
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.05 E-value=2.2e-09 Score=104.42 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=68.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|.+++...... ..+..+.+.......+.+ ..+.|+||||.... . .....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~---~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF--------R---TITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHhH--------H---HHHHH
Confidence 7999999999999999999997654322 111222233333344454 47899999996311 1 11223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++.......-...++.+..... ...++++|.||+|+..
T Consensus 71 ~~--~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 71 YY--RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTD 121 (166)
T ss_pred Hh--CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccc
Confidence 33 357999999665432110011122333333211 2368999999999753
No 89
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.05 E-value=1.1e-09 Score=105.40 Aligned_cols=117 Identities=19% Similarity=0.148 Sum_probs=70.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|++.+..... ...+++.+.......+++ ..+.|+||||.... ..+. ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF--------TAMR---DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------chHH---HH
Confidence 699999999999999999999754322 233444333333344455 45678999997432 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...|++++|.+++...........++.+.+... ....|+++|.||+|+..
T Consensus 69 ~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 69 YI--KNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 23 356999999766543211111123334443322 12478999999999763
No 90
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.05 E-value=1.1e-09 Score=105.32 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=66.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+|||||||+|+|.+...... ...+ |...........+..+.|+||||.... ...+ ..++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~~~~- 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-IIVP-TVGFNVESFEKGNLSFTAFDMSGQGKY--------RGLW---EHYY- 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-eecC-ccccceEEEEECCEEEEEEECCCCHhh--------HHHH---HHHH-
Confidence 589999999999999999998643221 1112 212222223456889999999998422 1111 2233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-ccccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg-~~i~k~vIVVLTK~D~l 298 (791)
..+|+++||++.............++.+..... .....|+++|+||+|+.
T Consensus 67 -~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 67 -KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred -ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 357999999555432110000112222222111 11257999999999986
No 91
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.05 E-value=3e-09 Score=108.68 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=72.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC------Cccccc---------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ------TKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~------~~a~vs---------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~ 231 (791)
++|+++|..|+|||||+++|++. ...... ...+.|........+.++..++||||||..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 79999999999999999999854 111000 1233444555555667788999999999842
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
....+...+ ..+|++++|++.... ....+.+.+..+.+. ..+ +|+++||+|+.
T Consensus 78 ------~~~~~~~~~--~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 ------YIKNMITGA--AQMDGAILVVSATDG-PMPQTREHLLLARQV-----GVPYIVVFLNKADMV 131 (195)
T ss_pred ------HHHHHHHHh--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCcEEEEEeCCCCC
Confidence 222333333 357999999655432 222344555555443 244 78899999986
No 92
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.05 E-value=1.7e-09 Score=105.81 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=68.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
.++|+|+|.+|||||||+|++.+...... ..+++ .+.......+.+ ..+.|+||||.... ... .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~~~---~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF--------RTI---T 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEECCEEEEEEEEeCCchHHH--------HHH---H
Confidence 48999999999999999999997653221 11221 122222233444 57899999996321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|.+++....-..-...+..+.... ....|+++|.||+|+..
T Consensus 70 ~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 70 TAYY--RGAMGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHh--CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 2333 35799999976643221001112333333321 12478999999999863
No 93
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.04 E-value=1.7e-09 Score=110.38 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=72.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|.+++.+.... ..+++. ++......++| ..+.|+||||....... ..........
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPRF 75 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHHH
Confidence 4899999999999999999998654322 234443 33333345566 46789999998643211 1111111111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-ccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg-~~i~k~vIVVLTK~D~l 298 (791)
..+ ..+|++++|.+++....-.....+.+.+.+... .....|+++|.||+|+.
T Consensus 76 ~~~--~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 76 RGL--RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred hhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 223 467999999666533210001122333333321 12247999999999986
No 94
>PLN03118 Rab family protein; Provisional
Probab=99.04 E-value=1.4e-09 Score=111.27 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=68.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..++|+|+|.+|||||||+|+|++....... +++ .+.......+++ ..+.|+||||.... ...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~--- 78 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA---PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------RTL--- 78 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC---CCceeEEEEEEEEECCEEEEEEEEECCCchhh--------HHH---
Confidence 3589999999999999999999987643222 222 122222333444 57899999997432 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++.... ..+. ..+..+...+......++++|.||+|+..
T Consensus 79 ~~~~~--~~~d~~vlv~D~~~~~s-f~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 79 TSSYY--RNAQGIILVYDVTRRET-FTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHH--hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 12233 35699999966543211 0111 11111222222222468899999999863
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.04 E-value=2.3e-09 Score=102.53 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=68.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+++|.+|+|||||+|++++....... .+++ ...........+ ..+.++||||.... .... .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~---~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HALG---P 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HHhh---H
Confidence 48999999999999999999987654321 1222 223222333334 46889999996311 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|.+++....-......++.+...... ..++++|+||+|..
T Consensus 68 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~ 118 (162)
T cd04123 68 IYY--RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLE 118 (162)
T ss_pred HHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccc
Confidence 223 3579999996654332100111233344444322 47899999999986
No 96
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.03 E-value=1.8e-09 Score=105.42 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=67.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|++.+...... ..+++ .+.........+ ..+.++||||.... .... .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~--------~~~~---~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY--------RTIT---T 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------HHHH---H
Confidence 6999999999999999999998654322 11221 122222223333 57899999997321 1111 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ...|++++|.+++.......-...++.+..... -..|+++|.||+|+..
T Consensus 69 ~~~--~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 120 (165)
T cd01865 69 AYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED 120 (165)
T ss_pred HHc--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence 223 467999999665432210011123333333221 1368999999999863
No 97
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.03 E-value=3.6e-09 Score=111.60 Aligned_cols=125 Identities=22% Similarity=0.204 Sum_probs=74.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEE--------------------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 208 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~-------------------------------------- 208 (791)
..|+|||++|+||||++|+|+|......+. ..+|+.+.++.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~ 105 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG 105 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999975333321 12232222111
Q ss_pred -----------eEEC---CeEEEEEeCCCCCCccccc--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HH
Q 003857 209 -----------GSVN---GIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FP 271 (791)
Q Consensus 209 -----------~~~~---G~~l~LIDTPGl~d~~~~~--~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D-~~ 271 (791)
.++. ..+++||||||+......+ ......+.+.+..+++. ..+++|+|++.... ....+ .+
T Consensus 106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~d-~~~~d~l~ 183 (240)
T smart00053 106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANVD-LANSDALK 183 (240)
T ss_pred CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCCC-CCchhHHH
Confidence 1111 1478999999997542111 11223344446666642 34688888544321 11223 35
Q ss_pred HHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 272 LLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 272 llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+++.+... ++++++|+||+|...
T Consensus 184 ia~~ld~~-----~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LAKEVDPQ-----GERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHc-----CCcEEEEEECCCCCC
Confidence 55555443 589999999999884
No 98
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.02 E-value=2.1e-09 Score=101.64 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=66.7
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 248 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~ 248 (791)
|+|+|++|||||||+|.|.+.+.... .. + |..........++..+.++||||.... .. ....++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-~~-~-t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~~~~~-- 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-TI-P-TVGFNMRKVTKGNVTLKVWDLGGQPRF--------RS---MWERYC-- 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-cc-C-CCCcceEEEEECCEEEEEEECCCCHhH--------HH---HHHHHH--
Confidence 78999999999999999998754322 11 2 222222233456789999999997321 11 222334
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 249 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 249 ~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
..+|++++|++++.... -......+...... ....|+++|+||+|..
T Consensus 66 ~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 66 RGVNAIVYVVDAADRTA---LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred hcCCEEEEEEECCCHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 35699999965543211 11112223332211 1246899999999976
No 99
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.01 E-value=4.2e-09 Score=101.89 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=67.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEE---CCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~---~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
++|+|+|.+|||||||+|+|.+..........+++. ++....... ....+.++||||... .... .
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~---~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL--------YSDM---V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH--------HHHH---H
Confidence 489999999999999999998642111122223221 222222222 236899999999621 1121 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|.+++....-......++.+... ....|+++|.||+|+..
T Consensus 70 ~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 70 SNYW--ESPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccc
Confidence 2334 4679999997665432100111223333322 12479999999999863
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.01 E-value=2e-09 Score=102.79 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=71.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+|+|+|++|||||||+|++++.. ......+++...........+ ..+.++||||.... ... ...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~---~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF--------SAM---RDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------HHH---HHHH
Confidence 58999999999999999999876 233334444444444444553 57889999997432 111 1223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ ...|++++|.+++....-.....++..+...... ...|+++|.||+|...
T Consensus 68 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 68 I--RQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred H--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 3 2468999996665432100111333333333221 2589999999999874
No 101
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.00 E-value=2.7e-09 Score=107.42 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=67.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC------cccccCCCCceeEEEEEEeEEC--------------CeEEEEEeCCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT------KTETDAFQPATDCIREVKGSVN--------------GIKVTFIDTPGFLP 226 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~------~a~vs~~~~~Tt~~~~~~~~~~--------------G~~l~LIDTPGl~d 226 (791)
++|+++|.+|+|||||+|+|++.. ........+.|.........+. +..+.++||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 489999999999999999998741 1111112234444443333333 67999999999831
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
....+.... ..+|++++|++..... ...+.+.+.. .... ..+.++|+||+|+.
T Consensus 81 -----------~~~~~~~~~--~~~d~vi~VvD~~~~~-~~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 -----------LIRTIIGGA--QIIDLMLLVVDATKGI-QTQTAECLVI-GEIL----CKKLIVVLNKIDLI 133 (192)
T ss_pred -----------HHHHHHHHH--hhCCEEEEEEECCCCc-cHHHHHHHHH-HHHc----CCCEEEEEECcccC
Confidence 112222222 3468999995554211 1112222222 2222 36899999999986
No 102
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.00 E-value=2.5e-09 Score=103.07 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=69.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+++|.+||||||++|++++...... ..|.........+.+..+.++||||.... ... ...++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~~~~- 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDKI--------RPL---WKHYY- 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEEECCEEEEEEECCCChhh--------HHH---HHHHh-
Confidence 589999999999999999998863221 22222333334556889999999998432 111 22233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|+++..... -......+...+.. ....|+++|+||+|...
T Consensus 65 -~~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 65 -ENTNGIIFVVDSSDRER---IEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred -ccCCEEEEEEECCCHHH---HHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 35699999965543210 11122223322221 12479999999999863
No 103
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.00 E-value=3.8e-09 Score=101.82 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=67.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCc-eeEEEEEEeEEC----CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVN----GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~-Tt~~~~~~~~~~----G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
++|+|+|.+|+|||||+|++.+..... ...++ +.+.......+. +..+.|+||||.... ..+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~--- 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF--------DAI--- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH--------HHh---
Confidence 489999999999999999999764322 11122 122322222333 468999999996211 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|.+++...........+..+.... ...|+++|.||+|+..
T Consensus 68 ~~~~~--~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 68 TKAYY--RGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 12233 46799999966654321001112222232221 2478999999999874
No 104
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.00 E-value=1.7e-09 Score=104.63 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=68.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|++.+..... ...+++.........+++ ..+.++||||.... ..+. ..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~~---~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF--------SAMR---DQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------hHHH---HH
Confidence 389999999999999999999865332 222444333333444444 46789999997432 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...|++++|.+++....-.........+.+.... ...|+++|.||+|+..
T Consensus 68 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 68 YM--RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 23 2458998886665421100011222333332221 2478999999999863
No 105
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.00 E-value=4.2e-09 Score=101.50 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=66.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
+|+|+|.+|||||||+|++.+....... + |.......... .+..+.++||||.... ... ...++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~---~-t~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~---~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI---P-TVGFNVEMLQLEKHLSLTVWDVGGQEKM--------RTV---WKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc---C-ccCcceEEEEeCCceEEEEEECCCCHhH--------HHH---HHHHh
Confidence 5899999999999999999987654321 1 22111111222 3578999999997321 111 22233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+|+++||++.+... ........+.+.+... ...|+++|+||+|+.
T Consensus 66 --~~~~~iv~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 66 --ENTDGLVYVVDSSDEA---RLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred --ccCCEEEEEEECCcHH---HHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 3569999996554321 1112223333332211 247999999999985
No 106
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.99 E-value=3.6e-09 Score=106.39 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=68.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|.+.+..... ....+++. ........+++ ..+.|+||||-.. .. ....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~---~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER--------FR---SVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH--------HH---HhhH
Confidence 489999999999999999998765322 22222222 22222234444 5788999999521 11 1112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++....-..-...+..+.+.... ..|+++|.||+|+..
T Consensus 69 ~~~--~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYY--RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG 120 (191)
T ss_pred HHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence 233 3579999996665432100112233444443221 468999999999863
No 107
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.99 E-value=2.1e-09 Score=108.05 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=73.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc-----------------cCCCCceeEEEEEEeE--ECCeEEEEEeCCCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET-----------------DAFQPATDCIREVKGS--VNGIKVTFIDTPGFLP 226 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v-----------------s~~~~~Tt~~~~~~~~--~~G~~l~LIDTPGl~d 226 (791)
-.+|+++|..|+|||||+++|++...... ......|......... ..+..++||||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 37999999999999999999985432211 0112345555555555 7899999999999832
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
....+...+ ..+|++++|++.... ......+.++.+... ..|.++|+||+|..
T Consensus 83 -----------f~~~~~~~~--~~~D~ailvVda~~g-~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 83 -----------FIKEMIRGL--RQADIAILVVDANDG-IQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp -----------HHHHHHHHH--TTSSEEEEEEETTTB-STHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred -----------eeeccccee--cccccceeeeecccc-ccccccccccccccc-----ccceEEeeeeccch
Confidence 222333334 457999999655422 112233444444433 47899999999987
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.99 E-value=6.1e-09 Score=101.20 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=67.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|+|++........ ...+.+.......+.+ ..+.++||||.... ... ...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVTVDDKLVTLQIWDTAGQERF--------QSL---GVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC-CccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HhH---HHH
Confidence 489999999999999999999875332211 1112222222334444 45679999997321 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++............+.+...... ....|+++|+||+|+..
T Consensus 69 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 69 FY--RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred Hh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 33 3579999996654321100001112222222211 11478999999999974
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.99 E-value=3.5e-09 Score=105.95 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=67.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeE---ECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGS---VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~---~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.++|+++|.+||||||++|++.+...... . +++ ......... ..+..+.++||||.... ...+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~--~-~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~-- 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT--V-PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL--------RPLW-- 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc--C-CccccceeEEEeeccCCCceEEEEEECCCcHhH--------HHHH--
Confidence 47999999999999999999987653321 1 211 122222222 24678999999997311 1112
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|+++||++++...........+..+.+... ....|+++|+||+|+.
T Consensus 70 -~~~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 70 -KSYT--RCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred -HHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 2233 357999999655432110000112222222211 2247999999999975
No 110
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.99 E-value=2.7e-09 Score=104.03 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=66.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||++.+++........ ++. ..+.......++ ..+.|+||||.... .. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~---~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKFEGKTILVDFWDTAGQERF--------QT---MHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEECCEEEEEEEEeCCCchhh--------hh---hhH
Confidence 489999999999999999998754322211 111 122222333343 46789999997321 11 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ...|++++|++++...........+..+.+.. ...|+++|.||+|+.
T Consensus 68 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYY--HKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred HHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 233 35799999966543211011123334443321 247999999999974
No 111
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.98 E-value=3.4e-09 Score=104.19 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=65.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCccccc-----C---------CCCceeEEEEEEeE-----ECCeEEEEEeCCCCCCcc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETD-----A---------FQPATDCIREVKGS-----VNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs-----~---------~~~~Tt~~~~~~~~-----~~G~~l~LIDTPGl~d~~ 228 (791)
+|+++|.+|||||||+|+|++....... . ..+.|......... ..+..+.|+||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 6999999999999999999874322110 0 01122222222222 24567899999999542
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. ..+..++ ..+|++++|+++.... ...+...+..+.. ...++++|+||+|+.
T Consensus 81 ------~----~~~~~~~--~~ad~~i~v~D~~~~~-~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 81 ------S----YEVSRSL--AACEGALLLVDATQGV-EAQTLANFYLALE-----NNLEIIPVINKIDLP 132 (179)
T ss_pred ------H----HHHHHHH--HhcCeEEEEEECCCCc-cHhhHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 1 1222333 2469999996554321 1122233322221 237899999999974
No 112
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.98 E-value=4.8e-09 Score=102.56 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=69.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|++|||||||+|.|.+........ |...........+..+.++||||.... ......+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~-----------~~~~~~~ 78 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAI-----------RPYWRNY 78 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHH-----------HHHHHHH
Confidence 5899999999999999999999975433221 222222344556899999999997321 1122333
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|+++..... -......+...... ....|+++++||+|..
T Consensus 79 ~--~~~~~ii~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 79 F--ENTDCLIYVIDSADKKR---LEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred h--cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 3 35689999965543211 01112222222111 1247899999999976
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.98 E-value=4.8e-09 Score=101.54 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=67.1
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+|+||||++|+|........ .+ |...........+..+.++||||.... ... ...++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~---~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~~~~~- 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT---IP-TIGFNVETVTYKNLKFQVWDLGGQTSI--------RPY---WRCYY- 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc---CC-ccCcCeEEEEECCEEEEEEECCCCHHH--------HHH---HHHHh-
Confidence 589999999999999999976543321 12 222222234456789999999998421 111 12233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
..+|++++|++++.... -....+.+...+.. ....|+++|+||+|+.
T Consensus 65 -~~~~~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 65 -SNTDAIIYVVDSTDRDR---LGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred -cCCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 46799999966543211 00112223222211 1247999999999975
No 114
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.98 E-value=3.8e-09 Score=105.34 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=71.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..+|+|+|++|||||||+|.|.+...... ..|.........+.+.++.++||||.... .. ....+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~--------~~---~~~~~ 83 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA--------RR---LWKDY 83 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH--------HH---HHHHH
Confidence 37999999999999999999998654322 12333333445667899999999996321 11 12233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|++...... -......+.+.++. ....|+++|+||+|+.
T Consensus 84 ~--~~ad~iilV~D~~~~~s---~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 84 F--PEVDGIVFLVDAADPER---FQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred h--ccCCEEEEEEECCcHHH---HHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 4 35699999955542210 01223344444332 1347999999999975
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.97 E-value=7.6e-09 Score=100.61 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=68.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+++|.+|||||||++++.+....... ....+.+.......+.+ ..+.++||||.... .. ...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ-GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF--------RS---ITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------HH---HHH
Confidence 379999999999999999999865432211 11111233333345556 46788999997321 11 112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ...|++++|++++.......-...+..+...... ..+.++|.||+|+..
T Consensus 75 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~ 126 (169)
T cd04114 75 SYY--RSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAE 126 (169)
T ss_pred HHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 334 3569999996654321100011223333333222 367899999999763
No 116
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.97 E-value=3.8e-09 Score=102.56 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=69.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|++..... .....+++.........+++. .+.|+||||.... ..+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~--- 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF--------TAMRDL--- 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccc--------hhHHHH---
Confidence 6899999999999999999985432 122334444333334455554 5679999997422 111111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ...|++++|.+++...........+..+.+... ....|+++|.||+|+.
T Consensus 69 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 119 (164)
T cd04175 69 YM--KNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLE 119 (164)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcch
Confidence 22 346899999666543211111123333433221 1247899999999986
No 117
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.97 E-value=8.2e-09 Score=102.01 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=69.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+++|.+||||||++++|....... ..++ ...........++.+.|+||||.... ...+ ..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~---~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~~~ 73 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPT-VGFNVETVTYKNVKFNVWDVGGQDKI--------RPLW---RHY 73 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc---ccCC-cccceEEEEECCEEEEEEECCCCHHH--------HHHH---HHH
Confidence 4799999999999999999998654321 1222 22222233456789999999998321 1111 223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
+ ..+|+++||++++... .-....+.+.+.+... ...|+++|.||+|+.
T Consensus 74 ~--~~a~~ii~v~D~t~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 74 Y--TGTQGLIFVVDSADRD---RIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred h--ccCCEEEEEEeCCchh---hHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 3 3579999996654321 1112334444443221 236899999999975
No 118
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.96 E-value=1e-08 Score=115.86 Aligned_cols=196 Identities=15% Similarity=0.124 Sum_probs=101.1
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhh-------hHHHHHHH-HHHhHHHHhhhhhhhHHHHHHhhh
Q 003857 89 MDPLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRL-------HLATLIRA-GESDMKMVNLRSDRTRAIAREQEA 157 (791)
Q Consensus 89 k~~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl-------~lae~i~~-~~~~l~~~~~~~~~~~~la~~~e~ 157 (791)
..+..+|+++|..|..+...+.+.. .++....++.++ .++..+-+ +................++..+..
T Consensus 102 ~~l~~Ei~~lr~~l~~~~~~~~~~~~~~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 181 (420)
T PRK14721 102 ANIMQEIRAMRQMLEEQLTTMGWSNFSQRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQSLKKTISLLTLNLRT 181 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 4789999999999999888765422 222223333333 12222211 111111000000111222222222
Q ss_pred cC-CCCCCCceEEEEEeecCCchHHHHhHhhCCCcc-----cccCCCCceeEEE---------------EE---------
Q 003857 158 TG-IPDLDFSIRILVLGKTGVGKSATINSIFDQTKT-----ETDAFQPATDCIR---------------EV--------- 207 (791)
Q Consensus 158 ~g-~~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a-----~vs~~~~~Tt~~~---------------~~--------- 207 (791)
.. .+.....-+|+|||++|+|||||+++|.+.... .+.-+...|.++. ..
T Consensus 182 ~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~ 261 (420)
T PRK14721 182 IGGDEIIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ 261 (420)
T ss_pred cCCccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH
Confidence 11 122234569999999999999999999764211 1100001111000 00
Q ss_pred --EeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc
Q 003857 208 --KGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 285 (791)
Q Consensus 208 --~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~ 285 (791)
.....+..+++|||+|+... +...++++..+.....++-+++| +++.+. ...+..+...|.. -
T Consensus 262 ~al~~l~~~d~VLIDTaGrsqr-------d~~~~~~l~~l~~~~~~~~~~LV--l~at~~----~~~~~~~~~~f~~--~ 326 (420)
T PRK14721 262 LMLHELRGKHMVLIDTVGMSQR-------DQMLAEQIAMLSQCGTQVKHLLL--LNATSS----GDTLDEVISAYQG--H 326 (420)
T ss_pred HHHHHhcCCCEEEecCCCCCcc-------hHHHHHHHHHHhccCCCceEEEE--EcCCCC----HHHHHHHHHHhcC--C
Confidence 01235678999999999643 34455666654332346677888 454432 1344455555543 1
Q ss_pred ccEEEEEeccCCCC
Q 003857 286 FNTILVMTHSSSTL 299 (791)
Q Consensus 286 k~vIVVLTK~D~l~ 299 (791)
...-+||||.|...
T Consensus 327 ~~~~~I~TKlDEt~ 340 (420)
T PRK14721 327 GIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEEEeeeCCC
Confidence 45567999999874
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.96 E-value=1.6e-09 Score=105.25 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=68.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|+|++...... ..++............ ...+.++||||..... .... .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~--------~~~~---~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE--YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD--------RLRP---L 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCEEEEEEEEeCCCccccc--------ccch---h
Confidence 5899999999999999999998765211 1122222222222333 4579999999985321 0001 1
Q ss_pred HHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t-~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
++ ..+|++++|.+++... ........+..+.... ...|+++|.||+|+..+.
T Consensus 68 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 68 SY--PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDE 120 (171)
T ss_pred hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhch
Confidence 12 3579999997665421 1001112233333322 258999999999987543
No 120
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.95 E-value=4.5e-09 Score=105.07 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=67.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|++.+....... .+..+.+.......+++ ..+.++||||.... .. ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~---~~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF--------RS---LNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------Hh---hHHH
Confidence 48999999999999999999976543211 11112222222334444 46789999996321 11 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|.+++....-..-...+..+....+. ..++++|.||+|+.
T Consensus 69 ~~--~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~ 118 (188)
T cd04125 69 YY--RGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLV 118 (188)
T ss_pred Hc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCc
Confidence 23 4679999996665432100111223333333222 36899999999976
No 121
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.95 E-value=7.1e-09 Score=106.56 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=70.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEEC---CeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~---G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
++|+|+|.+|||||||+|.+.+..... ...++. .+.......+. ...+.|+||||.... ..+ .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~--------~~l---~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG--------GKM---L 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH--------HHH---H
Confidence 489999999999999999999765322 222322 23333333443 368899999996211 111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.+++....-..-...+..+.+.... ....++++|.||+|+.
T Consensus 68 ~~~~--~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 68 DKYI--YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 2333 3679999996665432111111334445554332 1235689999999986
No 122
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.95 E-value=5.2e-09 Score=103.08 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=68.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+++|.+|||||||+|.|.+....... .|...........+..+.++||||-... ... ...++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~~~~- 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA----PTVGFTPTKLRLDKYEVCIFDLGGGANF--------RGI---WVNYY- 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc----CcccceEEEEEECCEEEEEEECCCcHHH--------HHH---HHHHH-
Confidence 4899999999999999999986322211 1222223344567899999999996311 111 22344
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
..+|+++||++.+... .-..+...+...... ....|+++|.||.|+.
T Consensus 65 -~~a~~ii~V~D~s~~~---s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 65 -AEAHGLVFVVDSSDDD---RVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred -cCCCEEEEEEECCchh---HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 4579999996554332 111222333333321 1257999999999975
No 123
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.95 E-value=3.9e-09 Score=106.09 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=68.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+|+|+|.+|||||||+|++.+..... ...+++.........+.+. .+.|+||||.... ..+.. .+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~---~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY--------TALRD---QW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhh--------HHHHH---HH
Confidence 58999999999999999998654322 2223333222223344554 5889999997322 11111 22
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|.+++...........+..+...... ....|+++|.||+|+.
T Consensus 68 ~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 68 I--REGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred H--HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 3 3569999997665432101112344444443321 1347899999999986
No 124
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.94 E-value=5.2e-09 Score=100.56 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=68.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|||||||+|++++..... ...+++..........++ ..+.++||||.... ... ...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~---~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY--------AAI---RDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh--------hHH---HHH
Confidence 489999999999999999999754332 233343333333334443 57899999997432 111 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...|++++|.+++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 68 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YH--RSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 33 345888888655432110001123333333211 23589999999999864
No 125
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.94 E-value=7e-09 Score=102.69 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=69.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+++|.+||||||++|.|.+...... ..|.........+.+..+.++||||.... ... ...++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~---~~~~~ 80 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESL--------RSS---WNTYY 80 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHH--------HHH---HHHHh
Confidence 7999999999999999999986543322 12222222344567889999999998421 111 12233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
.++|+++||++.+... .-....+.+.+.+... ...|+++|+||+|+.
T Consensus 81 --~~~d~vi~V~D~s~~~---~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 --TNTDAVILVIDSTDRE---RLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred --hcCCEEEEEEECCCHH---HHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 3679999996554321 1111222333332211 247999999999975
No 126
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.94 E-value=6.5e-09 Score=101.43 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=67.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+++|.+|||||||+|++.+..... ...+++. +.......+++ .++.|+||||.... .. ...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~---~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF--------RA---VTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HH---HHH
Confidence 799999999999999999998764321 1212211 22222233444 46899999996311 11 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|.+++.......-...+..+..... ...++++|.||+|+..
T Consensus 70 ~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 70 SYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA 121 (166)
T ss_pred HHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 233 367999999666543210011122222222211 2368999999999863
No 127
>CHL00071 tufA elongation factor Tu
Probab=98.94 E-value=1.1e-08 Score=115.81 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=73.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccc---------------cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCcc
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTET---------------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~v---------------s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~ 228 (791)
...++|+++|.+++|||||+|+|++...... ....+.|.+........++..++|+||||..+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~-- 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH--
Confidence 4458999999999999999999987522111 01133444554555566788999999999631
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
....+...+ ..+|++++|++.... ....+.+.+..+... ..+ +|+++||+|+.
T Consensus 88 ---------~~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~~~~~~~~~~-----g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 88 ---------YVKNMITGA--AQMDGAILVVSAADG-PMPQTKEHILLAKQV-----GVPNIVVFLNKEDQV 141 (409)
T ss_pred ---------HHHHHHHHH--HhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCEEEEEEEccCCC
Confidence 222222333 356999999655421 112344455444432 255 77899999986
No 128
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.93 E-value=1.8e-09 Score=99.44 Aligned_cols=116 Identities=20% Similarity=0.135 Sum_probs=65.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcc---cccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKT---ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a---~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
+|+|+|.+||||||||++|++.... ......+.+..............+.++|++|...... .... .+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~---~~-- 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS----QHQF---FL-- 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC----TSHH---HH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc----cccc---hh--
Confidence 6999999999999999999987755 1122323333333333222334588999999943211 0111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 296 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D 296 (791)
..+|++++|.+++....-..-..+++.+...-+.....|+++|.||.|
T Consensus 72 ----~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 ----KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ----HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ----hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 235999999666543210011123444444433223489999999998
No 129
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.93 E-value=6.4e-09 Score=111.45 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=71.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcc-----ccc------------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKT-----ETD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a-----~vs------------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
+|+|+|.+|+|||||+|+|+..... .+. ...+.|.........+++..++||||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 5899999999999999999632111 111 01233444555667889999999999998542
Q ss_pred chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 231 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 231 ~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. ..+..++ ..+|++++|++.... ....+..+++.+... ..|.++++||+|..
T Consensus 78 ----~----~~~~~~l--~~aD~ailVVDa~~g-~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~ 129 (270)
T cd01886 78 ----T----IEVERSL--RVLDGAVAVFDAVAG-VEPQTETVWRQADRY-----NVPRIAFVNKMDRT 129 (270)
T ss_pred ----H----HHHHHHH--HHcCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 1 1233334 245899999554322 112233455544432 47899999999976
No 130
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.93 E-value=8.2e-09 Score=117.02 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=76.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccC------------------------------CCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~------------------------------~~~~Tt~~~~~~~~~~G~ 214 (791)
..++|+++|.+|+|||||+|.|+.....+... ..+.|.++.......++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 45899999999999999999998554332210 245666777777788899
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~-t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
.+.|+||||..+. . ..+...+ ..+|++++|++.+.. .........+..+ ..++ ..++++|+|
T Consensus 85 ~i~liDtpG~~~~-------~----~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~---~~~iivviN 147 (425)
T PRK12317 85 YFTIVDCPGHRDF-------V----KNMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG---INQLIVAIN 147 (425)
T ss_pred EEEEEECCCcccc-------h----hhHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC---CCeEEEEEE
Confidence 9999999997432 1 1111112 357999999666531 1212333444333 2333 146899999
Q ss_pred ccCCC
Q 003857 294 HSSST 298 (791)
Q Consensus 294 K~D~l 298 (791)
|+|+.
T Consensus 148 K~Dl~ 152 (425)
T PRK12317 148 KMDAV 152 (425)
T ss_pred ccccc
Confidence 99986
No 131
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.93 E-value=1.2e-08 Score=102.27 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=68.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE-EEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~-~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|++++.... .+.+.+++.. .......++|. .+.++||||.... ..+. .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~---~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY--------EAMS---R 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh--------hhhh---H
Confidence 48999999999999999999976532 2223232222 22223445554 5669999997422 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|+++||.+++...........++.+... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 69 IYY--RGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 222 3679999997665432100111233333332 22478999999999763
No 132
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.92 E-value=1.4e-08 Score=99.74 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|||||||+|.+++........ .....+.......+.+ ..+.|+||||.... ...+ ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~~~ 71 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTE-ATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKSM---VQH 71 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccc-cceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhh---HHH
Confidence 799999999999999999998754321111 1111122333344455 67899999997321 1111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++...........+..+.... .....|+++|.||+|+..
T Consensus 72 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 72 YY--RNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE 123 (170)
T ss_pred hh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence 23 45799999966653321111112222333321 123479999999999763
No 133
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.92 E-value=6.1e-09 Score=102.52 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=69.8
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+||||||++|++.+.... .. ..|...........+..+.++||||.... ... ...++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~--------~~~---~~~~~- 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QP-IPTIGFNVETVEYKNLKFTIWDVGGKHKL--------RPL---WKHYY- 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---Cc-CCcCceeEEEEEECCEEEEEEECCCChhc--------chH---HHHHh-
Confidence 5899999999999999999986421 22 23333333345567889999999998432 111 12223
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
...|+++||++++.... -..+...+.+.+... ...|+++|.||.|+.
T Consensus 65 -~~ad~ii~V~D~s~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 65 -LNTQAVVFVVDSSHRDR---VSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred -ccCCEEEEEEeCCcHHH---HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 35699999966544311 112334444443221 136899999999975
No 134
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.92 E-value=6.1e-09 Score=122.80 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=76.4
Q ss_pred eecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCC
Q 003857 173 GKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPD 252 (791)
Q Consensus 173 GktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~d 252 (791)
|.+||||||++|+|.|.. ..++..+++|.+.......+++.++.++||||..+.... ...+.+. +.++....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~--s~~e~v~---~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF--SLEEEVA---RDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCcc--chHHHHH---HHHHhhcCCC
Confidence 899999999999999976 456667677777777777788999999999999764211 1122222 2334445789
Q ss_pred EEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 253 IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 253 vVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++++|++.+. .. ........+.+ ...|+++|+||+|+..
T Consensus 75 vvI~VvDat~--le-r~l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDASN--LE-RNLYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCCc--ch-hhHHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 9999954433 21 12222333322 2489999999999863
No 135
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.92 E-value=7.5e-09 Score=115.42 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=100.0
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhh---hHHHHH-HHHHHhHHHHh------hhhh-hhHHHHHH
Q 003857 89 MDPLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRL---HLATLI-RAGESDMKMVN------LRSD-RTRAIARE 154 (791)
Q Consensus 89 k~~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl---~lae~i-~~~~~~l~~~~------~~~~-~~~~la~~ 154 (791)
..|..+|.++|..|.++...+.+.. .++..+.+.+++ ++...+ +.+.+.+.... .... ....+...
T Consensus 44 ~~~~~El~~lr~ll~~~~~~~~w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (374)
T PRK14722 44 DTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAAN 123 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhc
Confidence 5688999999999999988876533 234444444444 221111 11111111100 0000 01111111
Q ss_pred hhhc--CCCCCCCceEEEEEeecCCchHHHHhHhhCCCcc-----cccCCCCcee-----------------EEEEEE--
Q 003857 155 QEAT--GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKT-----ETDAFQPATD-----------------CIREVK-- 208 (791)
Q Consensus 155 ~e~~--g~~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a-----~vs~~~~~Tt-----------------~~~~~~-- 208 (791)
.... ........-.|+|+|+||||||||+.+|.+.-.. .+.-+...|. .+....
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~ 203 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG 203 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCc
Confidence 1111 1112334568999999999999999999753211 1100000010 000000
Q ss_pred -------eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 003857 209 -------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 281 (791)
Q Consensus 209 -------~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg 281 (791)
..+.+.+++||||||+... +....+++..+.....+..+++| +++.+....-.++++.+....+
T Consensus 204 ~~l~~~l~~l~~~DlVLIDTaG~~~~-------d~~l~e~La~L~~~~~~~~~lLV--LsAts~~~~l~evi~~f~~~~~ 274 (374)
T PRK14722 204 GDLQLALAELRNKHMVLIDTIGMSQR-------DRTVSDQIAMLHGADTPVQRLLL--LNATSHGDTLNEVVQAYRSAAG 274 (374)
T ss_pred ccHHHHHHHhcCCCEEEEcCCCCCcc-------cHHHHHHHHHHhccCCCCeEEEE--ecCccChHHHHHHHHHHHHhhc
Confidence 1235679999999999643 34444555543222345667888 5544422111234444444322
Q ss_pred ccc---cccEEEEEeccCCCC
Q 003857 282 TAI---WFNTILVMTHSSSTL 299 (791)
Q Consensus 282 ~~i---~k~vIVVLTK~D~l~ 299 (791)
... ....-+||||.|...
T Consensus 275 ~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 275 QPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred ccccccCCCCEEEEeccccCC
Confidence 110 124568999999874
No 136
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.92 E-value=4.6e-09 Score=101.68 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=69.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||++.++....... ..+++.........++|. .+.|+||||.... ..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~--- 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF--------ASMRDL--- 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCchhheEEEEEEECCEEEEEEEEECCCcccc--------cchHHH---
Confidence 6999999999999999999987644322 223332333334444554 5778999997432 111111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|.+++....-......+..+.+... ....|+++|.||+|+.
T Consensus 69 ~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~ 119 (163)
T cd04176 69 YI--KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLE 119 (163)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 22 346999999666543210111233334444321 1347899999999975
No 137
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.92 E-value=3.5e-09 Score=103.05 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=67.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+|+|+|.+|||||||++++++... .....+++.........+++. .+.|+||||..... ... ...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~----~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD------TEQ----LERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc------cch----HHHH
Confidence 589999999999999999986432 222333332222333344554 57899999986310 011 1122
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|.+++.......-...+..+..........|+++|.||+|+.
T Consensus 69 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 69 I--RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred H--HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 3 24699999976654321001112333344332102247899999999975
No 138
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.91 E-value=8.5e-09 Score=100.91 Aligned_cols=113 Identities=23% Similarity=0.286 Sum_probs=67.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|++.+...... . +.|.......... ...++.++||||.... .. .+..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~----~~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN--V-PRVLPEITIPADVTPERVPTTIVDTSSRPQD-------RA----NLAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc--C-CCcccceEeeeeecCCeEEEEEEeCCCchhh-------hH----HHhh
Confidence 3899999999999999999987653221 1 2222211122222 4568899999998532 11 1222
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++.... ... ...+..+... .. ..|+++|.||+|+..
T Consensus 67 ~~--~~ad~~ilv~d~~~~~s-~~~~~~~~~~~i~~~-~~--~~pviiv~nK~Dl~~ 117 (166)
T cd01893 67 EI--RKANVICLVYSVDRPST-LERIRTKWLPLIRRL-GV--KVPIILVGNKSDLRD 117 (166)
T ss_pred hc--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh-CC--CCCEEEEEEchhccc
Confidence 33 45799999966553221 011 1122333332 22 479999999999864
No 139
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=2.2e-09 Score=105.09 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=46.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
.++|+++|.||||||||||+|++.....++..+++|+....+.. +..+.||||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 47999999999999999999999998888888677766655442 345899999996
No 140
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.90 E-value=3.1e-08 Score=113.72 Aligned_cols=193 Identities=15% Similarity=0.166 Sum_probs=94.7
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhh-------hHHHHH-HHHHHhH--HHHhhhhhhhHHHHHHh
Q 003857 89 MDPLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRL-------HLATLI-RAGESDM--KMVNLRSDRTRAIAREQ 155 (791)
Q Consensus 89 k~~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl-------~lae~i-~~~~~~l--~~~~~~~~~~~~la~~~ 155 (791)
..+.++|+.+|..|......+.+.. .++...++..++ .+++.| ..+.... ......+ ...+....
T Consensus 166 ~~l~~El~~lr~~l~~~~~~l~~~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~~~~~~l--~~~l~~~l 243 (484)
T PRK06995 166 DTVMQELRSLRGMLEEQLASLAWGERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAEAALDWV--QSALAKNL 243 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchhHHHHHH--HHHHHHHH
Confidence 4578889999999998887765322 344444544444 222222 1111110 0000000 01111111
Q ss_pred hhcC--CCCCCCceEEEEEeecCCchHHHHhHhhCCCcc-----cccCCCCceeE-----------------EEEE----
Q 003857 156 EATG--IPDLDFSIRILVLGKTGVGKSATINSIFDQTKT-----ETDAFQPATDC-----------------IREV---- 207 (791)
Q Consensus 156 e~~g--~~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a-----~vs~~~~~Tt~-----------------~~~~---- 207 (791)
...+ .......-.|+|||++|||||||+.+|.+.... .+.-+...|.+ +...
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAA 323 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCch
Confidence 1111 111233468999999999999999999753211 11101011100 0000
Q ss_pred -----EeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 003857 208 -----KGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 281 (791)
Q Consensus 208 -----~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg 281 (791)
.....++.+++|||+|.... +....+.+.. +... .++-.+|| +++.+.. ..+..+.+.|.
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~~~-------d~~~~e~~~~-l~~~~~p~e~~LV--LdAt~~~----~~l~~i~~~f~ 389 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMSQR-------DRMVSEQIAM-LHGAGAPVKRLLL--LNATSHG----DTLNEVVQAYR 389 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcChh-------hHHHHHHHHH-HhccCCCCeeEEE--EeCCCcH----HHHHHHHHHhc
Confidence 01234568999999999643 2223333332 3222 24557788 5554321 33444444443
Q ss_pred ccccccEEEEEeccCCCC
Q 003857 282 TAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 282 ~~i~k~vIVVLTK~D~l~ 299 (791)
.. ...-+||||+|...
T Consensus 390 ~~--~~~g~IlTKlDet~ 405 (484)
T PRK06995 390 GP--GLAGCILTKLDEAA 405 (484)
T ss_pred cC--CCCEEEEeCCCCcc
Confidence 32 35567899999763
No 141
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.89 E-value=6.5e-09 Score=102.29 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=67.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
++|+++|.+|||||||+|.++...... .. ..|. +........ ....+.++||||..... ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~-- 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KY-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG--------GLRD-- 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CC-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhc--------cccH--
Confidence 489999999999999999998543221 11 1222 222222222 34688999999984321 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|.+++.......-...++.+.+..+ ..|+++|.||+|+.
T Consensus 68 -~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 68 -GYY--IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred -HHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 122 357999999666533210011123344444432 48999999999985
No 142
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.89 E-value=1.5e-08 Score=99.03 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=68.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+++|.+|||||||+|.+++...... ..+..+.+.......+.+ ..+.|+||||... ...+ .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~---~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER--------FRSL---R 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHH--------HHHh---H
Confidence 348999999999999999999987543221 111112222223334444 4678899999621 1111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.+++..............+...... ....|+++|.||+|+.
T Consensus 72 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 72 TPFY--RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 2233 3568999887666432111111233333333221 1246899999999975
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.89 E-value=1.1e-08 Score=97.09 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=61.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+|||||||+|+|.+.... . ..|.. ..+.+ .+|||||.... .......+...+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~-~~t~~-----~~~~~---~~iDt~G~~~~-------~~~~~~~~~~~~- 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----Y-KKTQA-----VEYND---GAIDTPGEYVE-------NRRLYSALIVTA- 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----c-cccee-----EEEcC---eeecCchhhhh-------hHHHHHHHHHHh-
Confidence 7999999999999999999987642 1 12221 12222 68999997311 122223332223
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|++++|.+++..... .+..+ ...++ .|+++|+||+|+.
T Consensus 61 -~~ad~vilv~d~~~~~s~-~~~~~----~~~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 61 -ADADVIALVQSATDPESR-FPPGF----ASIFV----KPVIGLVTKIDLA 101 (142)
T ss_pred -hcCCEEEEEecCCCCCcC-CChhH----HHhcc----CCeEEEEEeeccC
Confidence 467999999666543221 22222 22222 4899999999976
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.89 E-value=2.2e-08 Score=100.47 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=68.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+|+|.+||||||+++.+....... ..+ |...........+..+.|+||||.... ... ...++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~---~~~~~ 82 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT---TIP-TIGFNVETVEYKNLKFTMWDVGGQDKL--------RPL---WRHYY 82 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---cCC-ccccceEEEEECCEEEEEEECCCCHhH--------HHH---HHHHh
Confidence 799999999999999999996433221 222 323222334557889999999997321 111 12233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+|+++||++++.... -....+.+.+.+... ...|+++|.||.|+.
T Consensus 83 --~~ad~iI~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 --QNTNGLIFVVDSNDRER---IGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred --cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 46799999966543210 112223334333221 136899999999974
No 145
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.89 E-value=3.5e-08 Score=111.74 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=77.7
Q ss_pred CceEEEEEeecCCchHHHHhHhh------CCCccccc--CCCCce--------eE--EEEEE--eE--------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPAT--------DC--IREVK--GS-------------- 210 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~~~~T--------t~--~~~~~--~~-------------- 210 (791)
.+..|+++|++||||||++++|. |..+..++ .+.++. .. +..+. ..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35789999999999999999996 55555542 222111 01 11111 00
Q ss_pred -ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 211 -VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 211 -~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
-.+++++||||||.... +...+.++.++.....||.++|| +|+... ......++.+.+.. ....
T Consensus 179 ~~~~~DvViIDTaGr~~~-------d~~lm~El~~i~~~~~p~e~lLV--lda~~G-q~a~~~a~~F~~~~-----~~~g 243 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQ-------EDSLFEEMLQVAEAIQPDNIIFV--MDGSIG-QAAEAQAKAFKDSV-----DVGS 243 (429)
T ss_pred HhCCCCEEEEECCCCCcc-------hHHHHHHHHHHhhhcCCcEEEEE--eccccC-hhHHHHHHHHHhcc-----CCcE
Confidence 02679999999998543 45667777776655688999999 555432 23344555554432 4677
Q ss_pred EEEeccCCCCC
Q 003857 290 LVMTHSSSTLP 300 (791)
Q Consensus 290 VVLTK~D~l~p 300 (791)
+|+||.|....
T Consensus 244 ~IlTKlD~~ar 254 (429)
T TIGR01425 244 VIITKLDGHAK 254 (429)
T ss_pred EEEECccCCCC
Confidence 89999998743
No 146
>PRK09866 hypothetical protein; Provisional
Probab=98.89 E-value=3.3e-08 Score=115.20 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
..++||||||+...... ..++.+. +.+ ..+|+||||++.... ....|..+++.+.+. +. ..|+++|+|
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~----eqL--~eADvVLFVVDat~~-~s~~DeeIlk~Lkk~-~K--~~PVILVVN 297 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLN----QQL--ARASAVLAVLDYTQL-KSISDEEVREAILAV-GQ--SVPLYVLVN 297 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHH----HHH--hhCCEEEEEEeCCCC-CChhHHHHHHHHHhc-CC--CCCEEEEEE
Confidence 47899999999754211 1122222 234 356999999655432 234566777777654 21 138999999
Q ss_pred ccCCC
Q 003857 294 HSSST 298 (791)
Q Consensus 294 K~D~l 298 (791)
|+|..
T Consensus 298 KIDl~ 302 (741)
T PRK09866 298 KFDQQ 302 (741)
T ss_pred cccCC
Confidence 99986
No 147
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.89 E-value=2e-08 Score=98.93 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=66.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEE------------CCeEEEEEeCCCCCCccccch
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV------------NGIKVTFIDTPGFLPSCVRNV 232 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~------------~G~~l~LIDTPGl~d~~~~~~ 232 (791)
.++|+++|.+|||||||+|.+.+..... ...++. .+.......+ ....+.|+||||....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP--KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF----- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-----
Confidence 3899999999999999999998754221 111111 1121111111 2367899999996211
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 233 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 233 ~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. .....++ ..+|++++|.+++.......-...+..+..... ....|+++|.||+|+..
T Consensus 77 ---~---~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 77 ---R---SLTTAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED 134 (180)
T ss_pred ---H---HHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence 1 1122233 467999999666532110011122233332211 11368999999999863
No 148
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.88 E-value=1.9e-08 Score=98.25 Aligned_cols=112 Identities=11% Similarity=0.069 Sum_probs=67.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+++|.+||||||+++++....... ..++ ..............+.|+||||.... ...+ ..++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt-~g~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~---~~~~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPT-IGFNVETVEYKNISFTVWDVGGQDKI--------RPLW---RHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCC-CCcceEEEEECCEEEEEEECCCCHhH--------HHHH---HHHh
Confidence 489999999999999999996443221 2232 22222233456789999999998321 1111 2333
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+|+++||.+.+... .-....+.+.+..... ...|+++|.||.|+.
T Consensus 66 --~~ad~~i~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 66 --QNTQGLIFVVDSNDRE---RIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred --cCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 4579999996654321 1112223333332211 136899999999975
No 149
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.88 E-value=8.7e-09 Score=100.91 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=68.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+||||||++|++.+..... ...+++.........+.+ ..+.++||||.... ..+.+ .
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~---~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF--------TAMRE---L 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCcccc--------hhhhH---H
Confidence 689999999999999999998765322 222333322222333444 57889999997432 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...+.+++|.+++....-.......+.+.+.+. ....|+++|.||.|+..
T Consensus 69 ~~--~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 69 YI--KSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 22 245888888666543210011123333433332 22578999999999863
No 150
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.88 E-value=1.8e-08 Score=103.18 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=67.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE--ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS--VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~--~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+|+|+|++|||||||++.|.+.....+ ..+.+.....+... ..+..+.|+||||.... ...+..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~~~~~ 68 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDKLLET 68 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH-----------HHHHHHH
Confidence 699999999999999999998643222 11111111111111 24678999999998421 1122223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc----cccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT----AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~----~i~k~vIVVLTK~D~l~ 299 (791)
+... +++++||++..... .....+...+...+.. ....|+++|.||.|+..
T Consensus 69 ~~~~-~~~vV~VvD~~~~~--~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 69 LKNS-AKGIVFVVDSATFQ--KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred Hhcc-CCEEEEEEECccch--hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 3221 48999995554431 1122333333333211 12479999999999874
No 151
>PLN03110 Rab GTPase; Provisional
Probab=98.88 E-value=2.2e-08 Score=103.30 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=70.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||++.|++....... .+....+.......+.+ ..+.|+||||... ... ..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~--------~~~---~~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRA---IT 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEECCEEEEEEEEECCCcHH--------HHH---HH
Confidence 4589999999999999999999986543221 11111233333344444 5889999999631 111 22
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..++++++|.+++...........+..+..... ...++++|.||+|+.
T Consensus 79 ~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 79 SAYY--RGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHh--CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence 2334 357999999666432210011123333333322 247899999999975
No 152
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.87 E-value=1.8e-08 Score=102.18 Aligned_cols=117 Identities=10% Similarity=0.077 Sum_probs=67.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEEC---CeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~---G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
++|+|+|.+|||||||+|.+++...... ..++.. +.......+. ...+.|+||||.... ..+ .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~--~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~--------~~~---~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF--------GGM---T 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh--------hhh---H
Confidence 4899999999999999999997643221 212211 2222223333 457899999997321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc--ccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg--~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.+++....-..-...+..+..... .....|+++|.||+|+.
T Consensus 68 ~~~~--~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 68 RVYY--RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 2233 467999999665432210001112233333211 12346899999999986
No 153
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.87 E-value=1.2e-08 Score=103.37 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=69.0
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+|+|+|.+|||||||+|++++..... ...+++.........+.+ ..+.|+||||.... ..+.. .+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~---~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF--------PAMRK---LS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhh--------hHHHH---HH
Confidence 58999999999999999998765332 222333233333445556 57889999997532 11111 12
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ ..+|++++|++++...........+..+.+... ....|+++|+||+|+..
T Consensus 68 ~--~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 I--QNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred h--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 2 357999999665432110011122233333322 22479999999999863
No 154
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.8e-09 Score=111.27 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=83.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccc-c--CCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchh---hh
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTET-D--AFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVK---RN 235 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s--~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~---~n 235 (791)
++.++|+.||.||.|||||+++||+...-.. + ..+..--+...+...-.+ .+++|+||.||+|.-..+.. ..
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 4779999999999999999999997543221 0 011111112222222233 47899999999986221100 00
Q ss_pred HHHHHH----------HHHH---HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 236 RKIMLS----------VKKF---IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 236 ~~i~~~----------ikk~---l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
+-+-.+ +++. ....++|++||++...+......|.-+++.+.+. .++|.|+.|+|....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH
Confidence 111111 1111 1345899999998888888777788888888776 799999999998743
No 155
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.87 E-value=7.5e-09 Score=101.79 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=61.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+++|.+|||||||+|+|.|..... ..|..+ .+.+. .+|||||..... ......+...+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~~~v-----~~~~~--~~iDtpG~~~~~-------~~~~~~~~~~~- 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKTQAV-----EFNDK--GDIDTPGEYFSH-------PRWYHALITTL- 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccceEE-----EECCC--CcccCCccccCC-------HHHHHHHHHHH-
Confidence 79999999999999999999875321 111111 11222 269999986442 12223332223
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|++++|++.+.... .... .+.+. + ..+++++++||+|+.
T Consensus 63 -~~ad~il~v~d~~~~~s-~~~~----~~~~~-~--~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 63 -QDVDMLIYVHGANDPES-RLPA----GLLDI-G--VSKRQIAVISKTDMP 104 (158)
T ss_pred -hcCCEEEEEEeCCCccc-ccCH----HHHhc-c--CCCCeEEEEEccccC
Confidence 46799999966653321 1121 22222 1 136899999999974
No 156
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.87 E-value=1.2e-08 Score=100.82 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=67.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.+|+|+|.+|||||||+|++++.... ....+++...........+ ..+.|+||||..+. ..... .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~---~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY--------SILPQ---K 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh--------HHHHH---H
Confidence 58999999999999999999976532 2223333322222233343 56789999998432 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+. ...|++++|.+.+....-......+..+.+..+. ...|+++|.||+|+..
T Consensus 69 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 69 YS--IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 22 2458888885555432100111223333333221 2468999999999863
No 157
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.87 E-value=3e-08 Score=98.53 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=69.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+++|.+|||||||++.+...... . ..+ |...........+..+.|+||||.... ..+ ...+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~-~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~---~~~~ 77 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--T-TIP-TIGFNVETVTYKNISFTVWDVGGQDKI--------RPL---WRHY 77 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--C-cCC-ccccceEEEEECCEEEEEEECCCChhh--------HHH---HHHH
Confidence 489999999999999999999633221 1 223 222222234457889999999997321 112 2233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
+ ..+|+++||++++.... -....+.+...+... ...|++||.||+|+.
T Consensus 78 ~--~~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 78 Y--TNTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred h--CCCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 4 45799999966543211 112333343333221 136899999999974
No 158
>PTZ00369 Ras-like protein; Provisional
Probab=98.86 E-value=1.2e-08 Score=102.46 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=68.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||++++.+...... ..+++.........+++ ..+.|+||||..+. ..+..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~~--- 71 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDE--YDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY--------SAMRD--- 71 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC--cCCchhhEEEEEEEECCEEEEEEEEeCCCCccc--------hhhHH---
Confidence 48999999999999999999997653221 22222222222233444 46778999998543 11111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ...|++++|.+++............+.+.+... ....|+++|.||+|+.
T Consensus 72 ~~~--~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 72 QYM--RTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD 123 (189)
T ss_pred HHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 223 356999999665443210011122333333221 1246899999999974
No 159
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.85 E-value=4.2e-08 Score=99.57 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=67.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
.++|+|+|.+|||||||+|.+++..... ...++. .+.......+.| ..+.|+||||-... ... .
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~---~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF--------RTI---T 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCccccceeEEEEEEECCEEEEEEEEeCCCchhH--------HHH---H
Confidence 4899999999999999999999865321 111211 122222334444 46889999996321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.++.....-..-...++.+... ....++++|.||+|+.
T Consensus 73 ~~~~--~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~---~~~~piivVgNK~Dl~ 123 (199)
T cd04110 73 STYY--RGTHGVIVVYDVTNGESFVNVKRWLQEIEQN---CDDVCKVLVGNKNDDP 123 (199)
T ss_pred HHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECcccc
Confidence 2233 3568999996654321100011223333332 2246889999999976
No 160
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.85 E-value=3.5e-08 Score=118.04 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=72.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCccccc--CCCCceeEEEEEE-----------------------------eEECCe
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCIREVK-----------------------------GSVNGI 214 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs--~~~~~Tt~~~~~~-----------------------------~~~~G~ 214 (791)
.-.|+|||++||||||++.+|.+.-....+ .+.-.|.+..++. ....++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 458999999999999999999864321100 0000111111100 123456
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc-cccEEEEEe
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI-WFNTILVMT 293 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i-~k~vIVVLT 293 (791)
+++||||||+... +...++++........++-+++| +++.+. .+.++.+.+.|.... -...-+|||
T Consensus 265 D~VLIDTAGRs~~-------d~~l~eel~~l~~~~~p~e~~LV--LsAt~~----~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 265 HLVLIDTVGMSQR-------DRNVSEQIAMLCGVGRPVRRLLL--LNAASH----GDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CEEEEeCCCCCcc-------CHHHHHHHHHHhccCCCCeEEEE--ECCCCc----HHHHHHHHHHHhhcccCCCCEEEEe
Confidence 8999999999643 34566666665544578888999 555442 134444445553211 124567999
Q ss_pred ccCCCC
Q 003857 294 HSSSTL 299 (791)
Q Consensus 294 K~D~l~ 299 (791)
|.|...
T Consensus 332 KLDEt~ 337 (767)
T PRK14723 332 KLDEAT 337 (767)
T ss_pred ccCCCC
Confidence 999874
No 161
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.85 E-value=1.7e-08 Score=107.43 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=68.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccc--cCCC---------------CceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTET--DAFQ---------------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~---------------~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
+|+|+|.+|+|||||+|+|++....+. +.+. ..|.........+++.+++||||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 589999999999999999986432211 1111 11122233445678899999999998532
Q ss_pred chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 231 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 231 ~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. ..+..++ ..+|++++|++.+.... .....+++.+.. ...|.++++||+|..
T Consensus 78 ----~----~~~~~~l--~~aD~~i~Vvd~~~g~~-~~~~~~~~~~~~-----~~~p~iivvNK~D~~ 129 (268)
T cd04170 78 ----V----GETRAAL--RAADAALVVVSAQSGVE-VGTEKLWEFADE-----AGIPRIIFINKMDRE 129 (268)
T ss_pred ----H----HHHHHHH--HHCCEEEEEEeCCCCCC-HHHHHHHHHHHH-----cCCCEEEEEECCccC
Confidence 1 1222233 24599999965543221 122234443332 247899999999976
No 162
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.85 E-value=2.6e-08 Score=98.76 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=69.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||++.+.+..... ...+++.........+++ ..+.|+||||.... ..+.. .
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~~---~ 69 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF--------TAMRD---Q 69 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhh--------HHHhH---H
Confidence 799999999999999999998754322 122333222233345556 46889999998422 11211 2
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ...|++++|.+++....-.......+.+.... .....|+++|.||+|+.
T Consensus 70 ~~--~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 70 YM--RCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE 120 (172)
T ss_pred Hh--hcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence 23 35699999976654321111112223343321 11247999999999975
No 163
>PLN03108 Rab family protein; Provisional
Probab=98.84 E-value=3.6e-08 Score=101.21 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=68.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.|++......... ....+.......+.+ +.+.|+||||.... ..+ .
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~-ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~--------~~~---~ 72 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RSI---T 72 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CccceEEEEEEEECCEEEEEEEEeCCCcHHH--------HHH---H
Confidence 348999999999999999999997654332211 111122222334444 46789999997321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.++............+..+..... ...++++|.||+|+.
T Consensus 73 ~~~~--~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 73 RSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 124 (210)
T ss_pred HHHh--ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCc
Confidence 2223 357999999666543210011122233333222 247899999999986
No 164
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.84 E-value=1.9e-08 Score=100.05 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=65.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC---CeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~---G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|++++..... ...+++........... ...+.|+||||.... ..+. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE--EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY--------DRLR---P 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH--------HHHH---H
Confidence 489999999999999999999865322 12222222111122222 347899999996321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|.+++.... ..+. ..+..+.. +. ...|+++|.||+|+..
T Consensus 68 ~~~--~~ad~ii~v~d~~~~~s-~~~~~~~~~~~~~~-~~--~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 LSY--PDVDVLLICYAVDNPTS-LDNVEDKWFPEVNH-FC--PGTPIMLVGLKTDLRK 119 (187)
T ss_pred HhC--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHH-hC--CCCCEEEEEeChhhhh
Confidence 122 46799999966654221 0111 11222222 11 2479999999999863
No 165
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.84 E-value=1.6e-08 Score=92.92 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=65.2
Q ss_pred EEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc
Q 003857 171 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 248 (791)
Q Consensus 171 LVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~ 248 (791)
|+|++|+|||||+|+|.+....... ..++........... .+..+.++||||..+.. .. . ..++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~-~---~~~~-- 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-YETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------SL-R---RLYY-- 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-cccchhheeeEEEEECCEEEEEEEEecCChHHHH-------hH-H---HHHh--
Confidence 5899999999999999987753111 111112222222222 36789999999985431 11 1 2222
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 249 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 249 ~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
...|++++|++++.... ..+......+..........++++|+||+|....
T Consensus 67 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 67 RGADGIILVYDVTDRES-FENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 45799999966654321 0111111001111122346899999999998743
No 166
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.82 E-value=3.2e-09 Score=118.10 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=78.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcc--cccCCCCceeEEEEEE-----------------------------eEECCe
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQPATDCIREVK-----------------------------GSVNGI 214 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a--~vs~~~~~Tt~~~~~~-----------------------------~~~~G~ 214 (791)
.-.|+|||+||||||||+.+|..+... ....+.-.|++..++. .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 568999999999999999999766541 1122333555555443 123457
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEec
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 294 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK 294 (791)
+++||||.|... .+...+.+++.++..+...-+.|| +++.+.. .-++.+-+.|+.- ...-++|||
T Consensus 283 d~ILVDTaGrs~-------~D~~~i~el~~~~~~~~~i~~~Lv--lsat~K~----~dlkei~~~f~~~--~i~~~I~TK 347 (407)
T COG1419 283 DVILVDTAGRSQ-------YDKEKIEELKELIDVSHSIEVYLV--LSATTKY----EDLKEIIKQFSLF--PIDGLIFTK 347 (407)
T ss_pred CEEEEeCCCCCc-------cCHHHHHHHHHHHhccccceEEEE--EecCcch----HHHHHHHHHhccC--CcceeEEEc
Confidence 899999999963 456667788887766645556777 4444432 3344555555431 445678999
Q ss_pred cCCCC
Q 003857 295 SSSTL 299 (791)
Q Consensus 295 ~D~l~ 299 (791)
.|...
T Consensus 348 lDET~ 352 (407)
T COG1419 348 LDETT 352 (407)
T ss_pred ccccC
Confidence 99874
No 167
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.82 E-value=2.5e-08 Score=98.77 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=65.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
+|+++|.+|||||||+|.+++.... ..+.+++. ........+.| ..+.|+||||.... .... ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF--------KCIA---ST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HhhH---HH
Confidence 7999999999999999999986432 12223222 22222333444 57899999998321 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|.+++...........++.+.+..... ..++++|.||+|+.
T Consensus 69 ~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~ 119 (170)
T cd04108 69 YY--RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLS 119 (170)
T ss_pred Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcC
Confidence 23 46799999966643211001112233332221111 24689999999975
No 168
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.82 E-value=1.4e-08 Score=113.25 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC----Ccc-----------cccCCCC---ceeEEEE---EEeEE--C---CeEEEEE
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ----TKT-----------ETDAFQP---ATDCIRE---VKGSV--N---GIKVTFI 219 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~----~~a-----------~vs~~~~---~Tt~~~~---~~~~~--~---G~~l~LI 219 (791)
.+.|.|+|+.++|||||||++++. +.. .+++.++ +||++.. ...++ . ..++++|
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 389999999999999999999998 666 6666666 7777654 22222 2 1589999
Q ss_pred eCCCCCCccccchhhhHH----------------HHHH--HHHHHhcCCCCEEEEEEeccCc-------cCCCCcHHHHH
Q 003857 220 DTPGFLPSCVRNVKRNRK----------------IMLS--VKKFIRRSPPDIVLYFERLDLI-------SMGFSDFPLLK 274 (791)
Q Consensus 220 DTPGl~d~~~~~~~~n~~----------------i~~~--ikk~l~~~~~dvVLlV~~ld~~-------t~~~~D~~llk 274 (791)
||+|+.+....+..+..+ ...+ .++.+. ...++-|+|.. |+. .-...+.++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtT-Dgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTT-DGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEc-CCCccccccccchHHHHHHHH
Confidence 999999865443233333 0000 222232 24588888741 321 11123446777
Q ss_pred HHHHHhcccccccEEEEEeccCCC
Q 003857 275 LMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 275 ~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.|++. .+|.++|+|+.|-.
T Consensus 175 eLk~~-----~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKEL-----NKPFIILLNSTHPY 193 (492)
T ss_pred HHHhc-----CCCEEEEEECcCCC
Confidence 77765 69999999999944
No 169
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.82 E-value=2e-08 Score=104.17 Aligned_cols=117 Identities=19% Similarity=0.035 Sum_probs=67.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|.+++.... ...+.++. .+.......+ ....+.|+||||... ....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~--- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------WTED--- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------HHHh---
Confidence 48999999999999999999754432 11111111 1222222233 346789999999841 0111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. ..+|++++|.+++..........++..+.... .....|+|+|.||+|+..
T Consensus 67 ~~~~-~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 67 SCMQ-YQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HHhh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccc
Confidence 1221 16799999976654321111123333443321 123579999999999863
No 170
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.81 E-value=5.2e-08 Score=95.16 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=67.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+++|.+|||||||++.+++...... ..++. .+.........+ ..+.|+||||.... ... ..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~---~~ 67 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY--------QTI---TK 67 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH--------Hhh---HH
Confidence 4799999999999999999987653221 11211 122223344555 46789999996321 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. ..+|++++|.+++....-..-...++.+.... ....++++|.||.|+.
T Consensus 68 ~~~--~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 68 QYY--RRAQGIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEE 118 (161)
T ss_pred HHh--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccc
Confidence 233 35799999977654321111112223332221 1246899999999975
No 171
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.81 E-value=3.3e-08 Score=101.71 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=67.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+|+|.+|||||||+|.+++........ +..+.+.......+ .+ ..+.|+||||.... ..+ ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~---~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF--------RSI---TR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH--------HHH---HH
Confidence 799999999999999999999866433321 11112222222223 23 57899999996311 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ...|++++|.+++....-..-...++.+.+.... -..++++|.||+|+..
T Consensus 71 ~~~--~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 71 SYY--RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred HHh--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 233 3569999996665432100111233333333222 1356788999999863
No 172
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.81 E-value=7.1e-08 Score=96.77 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=69.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+++|..||||||+++.+....... ..+ |...........+..+.|+||||-.. ...+ ...++
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~p-t~g~~~~~~~~~~~~~~i~D~~Gq~~--------~~~~---~~~~~ 82 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVT---TIP-TIGFNVETVEYKNISFTVWDVGGQDK--------IRPL---WRHYF 82 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCcc---ccC-CcceeEEEEEECCEEEEEEECCCCHH--------HHHH---HHHHh
Confidence 799999999999999999997543221 112 22222233456788999999999621 1112 22233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+|+++||++.+... .-....+.+...+... -..|+++|.||.|+.
T Consensus 83 --~~a~~iI~V~D~s~~~---s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 83 --QNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred --ccCCEEEEEEeCCcHH---HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 3579999996554321 1112333444443221 147899999999975
No 173
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.81 E-value=3e-08 Score=104.27 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=68.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccc--cCC---------------CCceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~v--s~~---------------~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
+|+++|.+|+|||||+|+|+.....+. +.+ ...|.........+++.++.++||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 589999999999999999986432221 111 011222334556778999999999999643
Q ss_pred chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 231 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 231 ~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
... +..++ ..+|.+++|++.... .......+++.+.+. ..|.++++||+|..
T Consensus 78 ----~~~----~~~~l--~~aD~~IlVvd~~~g-~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~ 129 (237)
T cd04168 78 ----IAE----VERSL--SVLDGAILVISAVEG-VQAQTRILWRLLRKL-----NIPTIIFVNKIDRA 129 (237)
T ss_pred ----HHH----HHHHH--HHhCeEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 111 22233 235899999554322 111122344433332 47899999999976
No 174
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.81 E-value=3.7e-08 Score=96.82 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=67.5
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 248 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~ 248 (791)
|+|+|.+||||||+++++.+..... ...++ ...........+..+.++||||-... ..++. .++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~--~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~~--------~~~~~---~~~-- 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE--SVVPT-TGFNSVAIPTQDAIMELLEIGGSQNL--------RKYWK---RYL-- 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc--ccccc-CCcceEEEeeCCeEEEEEECCCCcch--------hHHHH---HHH--
Confidence 7999999999999999999764321 12122 12222334456789999999997432 11111 233
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 249 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 249 ~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|+++||++.+.... -......+.+........|+++|.||.|+.
T Consensus 66 ~~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 66 SGSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred hhCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 35699999965543210 112222333333222358999999999975
No 175
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=7.1e-09 Score=104.03 Aligned_cols=58 Identities=34% Similarity=0.439 Sum_probs=48.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
...++|+|+|.|||||||+||+|+|...+.++..+++|+....+.. +..+.|+||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3458999999999999999999999999888888777776665543 356899999996
No 176
>PLN03127 Elongation factor Tu; Provisional
Probab=98.79 E-value=4.1e-08 Score=112.34 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=74.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhC------CCccccc---------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 166 SIRILVLGKTGVGKSATINSIFD------QTKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG------~~~a~vs---------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
.++|+++|..++|||||+|+|.+ +....+. ...+.|.+......+.++..++||||||..+.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f--- 137 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY--- 137 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch---
Confidence 48999999999999999999973 2211111 11345666666667777889999999998431
Q ss_pred chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 231 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 231 ~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
+..+...+ ..+|++++|++.+.. ....+.+.+..+... ..+ +|+++||+|+.
T Consensus 138 --------~~~~~~g~--~~aD~allVVda~~g-~~~qt~e~l~~~~~~-----gip~iIvviNKiDlv 190 (447)
T PLN03127 138 --------VKNMITGA--AQMDGGILVVSAPDG-PMPQTKEHILLARQV-----GVPSLVVFLNKVDVV 190 (447)
T ss_pred --------HHHHHHHH--hhCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCeEEEEEEeeccC
Confidence 12222222 347999999655322 122345555555443 356 57899999986
No 177
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.79 E-value=5.8e-08 Score=103.95 Aligned_cols=113 Identities=9% Similarity=0.055 Sum_probs=68.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--cCCC-----C--------------ceeEEEEEEeEECCeEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQ-----P--------------ATDCIREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~-----~--------------~Tt~~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
-+|+|+|.+|+|||||+|+|+.....+. +.+. + .|-........+++.++.||||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4899999999999999999985432221 1110 1 11123334567889999999999985
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+. ..... .++ ..+|++++|++.... .......+++.... ...|+++++||+|..
T Consensus 83 df-------~~~~~----~~l--~~aD~~IlVvda~~g-~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DF-------SEDTY----RTL--TAVDSAVMVIDAAKG-VEPQTRKLFEVCRL-----RGIPIITFINKLDRE 136 (267)
T ss_pred HH-------HHHHH----HHH--HHCCEEEEEEECCCC-ccHHHHHHHHHHHh-----cCCCEEEEEECCccC
Confidence 32 11122 223 246999999554321 11111223322222 247899999999975
No 178
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.78 E-value=3.9e-08 Score=104.03 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=70.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+|.+++..... .+.+++.+.......++| +.+.|+||+|..+. ..+ ...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~--------~~~-~~~-- 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF--------PAM-RRL-- 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh--------hHH-HHH--
Confidence 379999999999999999998654321 233433333333445555 57889999997432 111 111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-------ccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-------TAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg-------~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++....-.....+++.|..... .....|+++|.||+|+..
T Consensus 68 ~~--~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SI--LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred Hh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 12 356999999777643210111233334433210 112479999999999863
No 179
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.78 E-value=6.2e-08 Score=99.50 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=69.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
+.|+++|..||||||+++.+....... ...++. .+.......++| ..+.|+||+|-... ..+. .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~--------~~l~---~ 67 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSIT---S 67 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh--------HHHH---H
Confidence 479999999999999999998654221 122222 233333445566 67899999997321 1111 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|.+++....-..-...++.+...... ..++++|.||+|+.
T Consensus 68 ~y~--~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~ 118 (202)
T cd04120 68 AYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCE 118 (202)
T ss_pred HHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccc
Confidence 233 3679999997765432111111223333333222 37899999999985
No 180
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.78 E-value=1.7e-08 Score=98.76 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=67.0
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
|+|+|.+|||||||+|++.+...... ..+++.........+++. .+.|+||||..... .+.. .++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~---~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED--YVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD--------RLRP---LSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC--CCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc--------hhch---hhc
Confidence 68999999999999999998654221 223332222223344454 68899999974321 1111 122
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|.+++.... .... ..+..+.... ...|+++|.||+|+..
T Consensus 68 --~~~d~~ilv~d~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 68 --PDTDVFLICFSVDSPAS-FENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred --CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 36799999976654311 1111 1233333332 2489999999999864
No 181
>PRK12735 elongation factor Tu; Reviewed
Probab=98.78 E-value=5e-08 Score=109.89 Aligned_cols=118 Identities=10% Similarity=0.030 Sum_probs=73.4
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCC------Ccccc---------cCCCCceeEEEEEEeEECCeEEEEEeCCCCCC
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQ------TKTET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 226 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~------~~a~v---------s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d 226 (791)
+....++|+++|.+++|||||+|+|++. ..+.. ....+.|.+........++..++|+||||..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~- 86 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA- 86 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-
Confidence 3455699999999999999999999862 11110 0123455555555556677899999999983
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE-EEEeccCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI-LVMTHSSST 298 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI-VVLTK~D~l 298 (791)
.....+...+ ..+|++++|++.... ......+.+..+.. . ..+.+ +++||+|+.
T Consensus 87 ----------~f~~~~~~~~--~~aD~~llVvda~~g-~~~qt~e~l~~~~~-~----gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 ----------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTREHILLARQ-V----GVPYIVVFLNKCDMV 141 (396)
T ss_pred ----------HHHHHHHhhh--ccCCEEEEEEECCCC-CchhHHHHHHHHHH-c----CCCeEEEEEEecCCc
Confidence 1222332323 367999999655431 11233344444332 2 25644 679999986
No 182
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.76 E-value=3.8e-08 Score=101.92 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=68.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
...++|+|+|.+|||||||+++++....... ..++. .......... ....+.|+||||.... ..+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCc--cCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------hhhhH
Confidence 4558999999999999999999865432211 11111 1222222222 3468999999998432 11111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. ...|++|+|.+++...........++.+.+.. ...|+++|.||+|+.
T Consensus 81 ---~~~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 130 (219)
T PLN03071 81 ---GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (219)
T ss_pred ---HHc--ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhh
Confidence 122 35689999966654321111112333444332 247999999999975
No 183
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.76 E-value=1.9e-08 Score=108.10 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=60.5
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-----------------EEEEEeCCCCCCccccc
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-----------------KVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-----------------~l~LIDTPGl~d~~~~~ 231 (791)
|+|||.||||||||+|+|++... .++.++.+|.+.......+.+. .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 57999999999999999999887 6677767776766655555443 4999999999865322
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERL 260 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~l 260 (791)
.+.+...+...+ ..+|++++|++.
T Consensus 79 ---~~glg~~fL~~i--~~~D~li~VV~~ 102 (274)
T cd01900 79 ---GEGLGNKFLSHI--REVDAIAHVVRC 102 (274)
T ss_pred ---hhHHHHHHHHHH--HhCCEEEEEEeC
Confidence 233333333333 357999999654
No 184
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.76 E-value=4.9e-08 Score=97.23 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=69.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||++.+...... ....|++.........+++ ..+.|+||+|-... ..+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY--------DRLR---PL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch--------hhhh---hh
Confidence 68999999999999999999875421 2233444333333345556 57889999998532 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|.+++.... .... ..+..+.... ...|+++|.||+|+.
T Consensus 69 ~~--~~a~~~ilv~d~~~~~s-~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~ 118 (175)
T cd01874 69 SY--PQTDVFLVCFSVVSPSS-FENVKEKWVPEITHHC---PKTPFLLVGTQIDLR 118 (175)
T ss_pred hc--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECHhhh
Confidence 23 35799999976654321 1111 1233333321 247999999999975
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.76 E-value=6.7e-08 Score=98.77 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=64.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc-ccC-CCCceeEEEEEEeEE---------------------------CC----
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE-TDA-FQPATDCIREVKGSV---------------------------NG---- 213 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~-vs~-~~~~Tt~~~~~~~~~---------------------------~G---- 213 (791)
++|+++|..|+|||||+.+|.+..... ... ..+.|..+......+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997652111 000 011111111111111 13
Q ss_pred --eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 214 --IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 214 --~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
..+.||||||.. .....+...+ ..+|++++|++++...........+..+.. .+ ..++++|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiiv 143 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIV 143 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEE
Confidence 789999999952 1222333323 357999999666532111223344444322 22 1478999
Q ss_pred EeccCCC
Q 003857 292 MTHSSST 298 (791)
Q Consensus 292 LTK~D~l 298 (791)
+||+|+.
T Consensus 144 vNK~Dl~ 150 (203)
T cd01888 144 QNKIDLV 150 (203)
T ss_pred EEchhcc
Confidence 9999986
No 186
>PTZ00258 GTP-binding protein; Provisional
Probab=98.76 E-value=3e-08 Score=111.20 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-----------------CeEEEEEeCCCCCC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-----------------GIKVTFIDTPGFLP 226 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-----------------G~~l~LIDTPGl~d 226 (791)
...++|.|||.||||||||+|+|.+.. ..++.++.+|.++......+. +.++.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 445899999999999999999998876 466777677767666555444 23589999999986
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 260 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l 260 (791)
.... .+.+...+...+ ..+|++++|++.
T Consensus 98 ga~~----g~gLg~~fL~~I--r~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASE----GEGLGNAFLSHI--RAVDGIYHVVRA 125 (390)
T ss_pred CCcc----hhHHHHHHHHHH--HHCCEEEEEEeC
Confidence 5322 223333333333 356999999654
No 187
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.76 E-value=7.3e-08 Score=114.72 Aligned_cols=116 Identities=15% Similarity=0.049 Sum_probs=72.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccC----------CC----------------------CceeEEEEEEeEEC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDA----------FQ----------------------PATDCIREVKGSVN 212 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~----------~~----------------------~~Tt~~~~~~~~~~ 212 (791)
..++|+|+|.+|+|||||+|.|+.....++.. .. +.|.+.......++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34799999999999999999998765544311 11 12233334455667
Q ss_pred CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 213 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 213 G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
+.+++||||||..+ ....+...+ ..+|++++|++.+.. ....+.+.+..+.. ++ .+++|+++
T Consensus 103 ~~~~~liDtPG~~~-----------f~~~~~~~~--~~aD~~llVvda~~g-~~~~t~e~~~~~~~-~~---~~~iivvv 164 (632)
T PRK05506 103 KRKFIVADTPGHEQ-----------YTRNMVTGA--STADLAIILVDARKG-VLTQTRRHSFIASL-LG---IRHVVLAV 164 (632)
T ss_pred CceEEEEECCChHH-----------HHHHHHHHH--HhCCEEEEEEECCCC-ccccCHHHHHHHHH-hC---CCeEEEEE
Confidence 88999999999732 111122223 367999999665422 11223334433332 23 25788999
Q ss_pred eccCCC
Q 003857 293 THSSST 298 (791)
Q Consensus 293 TK~D~l 298 (791)
||+|+.
T Consensus 165 NK~D~~ 170 (632)
T PRK05506 165 NKMDLV 170 (632)
T ss_pred Eecccc
Confidence 999986
No 188
>PRK12736 elongation factor Tu; Reviewed
Probab=98.75 E-value=1.2e-07 Score=106.76 Aligned_cols=117 Identities=11% Similarity=0.016 Sum_probs=73.9
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCc------cc----c-----cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTK------TE----T-----DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~------a~----v-----s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
....++|+++|..++|||||+++|++... +. . ....+.|.+........++..++||||||..+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~- 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD- 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH-
Confidence 34458999999999999999999986311 10 0 01234555565555556778999999999631
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
.+..+...+ ..+|++++|++.+.. ....+.+.+..+... ..+ +|+++||+|+.
T Consensus 88 ----------f~~~~~~~~--~~~d~~llVvd~~~g-~~~~t~~~~~~~~~~-----g~~~~IvviNK~D~~ 141 (394)
T PRK12736 88 ----------YVKNMITGA--AQMDGAILVVAATDG-PMPQTREHILLARQV-----GVPYLVVFLNKVDLV 141 (394)
T ss_pred ----------HHHHHHHHH--hhCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCEEEEEEEecCCc
Confidence 112222222 357999999665431 122344555554433 355 67899999986
No 189
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.75 E-value=4.8e-08 Score=101.78 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=68.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+|+|.+|||||||+|.+++...... .+ |.........+....+.|+||||.... ..+.. .++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~---~~-Tig~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~~---~~~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT---VS-TVGGAFYLKQWGPYNISIWDTAGREQF--------HGLGS---MYC 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC---CC-ccceEEEEEEeeEEEEEEEeCCCcccc--------hhhHH---HHh
Confidence 4899999999999999999997654321 12 222222223345678999999997422 11111 123
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|.+++.... .... ..+..+.+... ...++|+|.||+|+..
T Consensus 66 --~~ad~~IlV~Dvt~~~S-f~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 66 --RGAAAVILTYDVSNVQS-LEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred --ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 36799999976654321 1111 12222333222 2368999999999864
No 190
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.75 E-value=3.5e-08 Score=96.24 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=65.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|||++|+|||||+++|.|.+... .-|..+... + .+|||||=+ .++......+....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KTq~i~~~-----~---~~IDTPGEy-------iE~~~~y~aLi~ta- 61 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKTQAIEYY-----D---NTIDTPGEY-------IENPRFYHALIVTA- 61 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----CccceeEec-----c---cEEECChhh-------eeCHHHHHHHHHHH-
Confidence 89999999999999999999976321 223223221 1 569999986 33555556654433
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|+|++|.+.+.... . .--.+...| .+|+|=|+||+|+.
T Consensus 62 -~dad~V~ll~dat~~~~--~---~pP~fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 62 -QDADVVLLLQDATEPRS--V---FPPGFASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred -hhCCEEEEEecCCCCCc--c---CCchhhccc----CCCEEEEEECccCc
Confidence 46799999955443221 0 011123333 48999999999987
No 191
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.74 E-value=4.9e-08 Score=110.93 Aligned_cols=199 Identities=17% Similarity=0.123 Sum_probs=98.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHhhcCC-ChhhHHHHHHHhhh---h----HHHHHHH-HHHhHHHHh--hhhhhhHHHHHH
Q 003857 86 DKMMDPLVKIEDLQVKFLRLLQRFGQ-SQDNILAVKVLYRL---H----LATLIRA-GESDMKMVN--LRSDRTRAIARE 154 (791)
Q Consensus 86 ~e~k~~~~kIe~lR~~Ll~l~~rLg~-~~ed~lva~vL~rl---~----lae~i~~-~~~~l~~~~--~~~~~~~~la~~ 154 (791)
.+..++..++.++|..|..+....+. ...++....+..++ + ++..+-. +........ ....-...++..
T Consensus 130 ~~~~~l~~el~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 209 (424)
T PRK05703 130 KELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANM 209 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35567889999999999988877622 22233333333333 1 1222111 111110000 000111222222
Q ss_pred hhhcCCCCCCCceEEEEEeecCCchHHHHhHhhCCC--------ccccc--CCCCcee----------E--EEEEE----
Q 003857 155 QEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQT--------KTETD--AFQPATD----------C--IREVK---- 208 (791)
Q Consensus 155 ~e~~g~~~~~~~l~IlLVGktGvGKSTLINsLlG~~--------~a~vs--~~~~~Tt----------~--~~~~~---- 208 (791)
......+.....-.|+|+|++||||||++..|...- +..++ .+..+.. . +....
T Consensus 210 l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~ 289 (424)
T PRK05703 210 IPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE 289 (424)
T ss_pred hCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHh
Confidence 222221112223589999999999999999886432 11111 1100000 0 00000
Q ss_pred -----eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc
Q 003857 209 -----GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 282 (791)
Q Consensus 209 -----~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~-~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~ 282 (791)
....+.+++||||||+... +...+..+..++.. ..+.-+++| +++... ...+..+.+.|..
T Consensus 290 l~~~l~~~~~~DlVlIDt~G~~~~-------d~~~~~~L~~ll~~~~~~~~~~LV--l~a~~~----~~~l~~~~~~f~~ 356 (424)
T PRK05703 290 LAKALEQLRDCDVILIDTAGRSQR-------DKRLIEELKALIEFSGEPIDVYLV--LSATTK----YEDLKDIYKHFSR 356 (424)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCC-------CHHHHHHHHHHHhccCCCCeEEEE--EECCCC----HHHHHHHHHHhCC
Confidence 1224578999999999543 34445556665542 234566677 443322 1334444455542
Q ss_pred cccccEEEEEeccCCCC
Q 003857 283 AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 283 ~i~k~vIVVLTK~D~l~ 299 (791)
- ...-+|+||+|...
T Consensus 357 ~--~~~~vI~TKlDet~ 371 (424)
T PRK05703 357 L--PLDGLIFTKLDETS 371 (424)
T ss_pred C--CCCEEEEecccccc
Confidence 1 23467999999763
No 192
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.74 E-value=8.2e-08 Score=100.24 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=68.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcc------cc------cCC-CCcee------------------------EEEEEEeE
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKT------ET------DAF-QPATD------------------------CIREVKGS 210 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a------~v------s~~-~~~Tt------------------------~~~~~~~~ 210 (791)
+|+++|..++|||||++.+...... .. ... .+.|. ........
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5889999999999999999732110 00 000 00111 11012234
Q ss_pred ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 003857 211 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 290 (791)
Q Consensus 211 ~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIV 290 (791)
..++.+.||||||..+. .+.+...+....+|++++|++++.. ....+.+++..+... ..|+++
T Consensus 81 ~~~~~i~liDtpG~~~~-----------~~~~~~~~~~~~~D~~llVvda~~g-~~~~d~~~l~~l~~~-----~ip~iv 143 (224)
T cd04165 81 KSSKLVTFIDLAGHERY-----------LKTTLFGLTGYAPDYAMLVVAANAG-IIGMTKEHLGLALAL-----NIPVFV 143 (224)
T ss_pred eCCcEEEEEECCCcHHH-----------HHHHHHhhcccCCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCEEE
Confidence 56789999999997321 2222333322368999999665432 223455666665543 478999
Q ss_pred EEeccCCC
Q 003857 291 VMTHSSST 298 (791)
Q Consensus 291 VLTK~D~l 298 (791)
|+||+|+.
T Consensus 144 vvNK~D~~ 151 (224)
T cd04165 144 VVTKIDLA 151 (224)
T ss_pred EEECcccc
Confidence 99999986
No 193
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.74 E-value=1.4e-07 Score=106.24 Aligned_cols=118 Identities=12% Similarity=0.031 Sum_probs=73.6
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCC------Ccccc----c-----CCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQ------TKTET----D-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~------~~a~v----s-----~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
....++|+++|..++|||||+++|++. ..+.. + ...+.|.+........++..+.||||||..+.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345689999999999999999999842 21111 0 11345656655566667889999999998421
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l~ 299 (791)
...+...+ ..+|++++|++++.. ......+.+..+... ..+ +|+++||+|+..
T Consensus 89 -----------~~~~~~~~--~~~D~~ilVvda~~g-~~~qt~e~l~~~~~~-----gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 -----------VKNMITGA--AQMDGAILVVSATDG-PMPQTREHILLARQV-----GVPYIVVFLNKCDMVD 142 (394)
T ss_pred -----------HHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCEEEEEEEecccCC
Confidence 12222222 357999999665431 112333445444332 245 457899999863
No 194
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.74 E-value=3.5e-08 Score=109.59 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=62.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-----------------eEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-----------------~~l~LIDTPGl~d~~~ 229 (791)
++|.|||.||||||||+|+|++.. +.++.++.+|.++......+.+ ..+.|+||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999988 5677776677666655444443 2589999999986532
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 260 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l 260 (791)
..+.+...+...+ ..+|++++|++.
T Consensus 82 ----~g~glg~~fL~~i--~~aD~li~VVd~ 106 (364)
T PRK09601 82 ----KGEGLGNQFLANI--REVDAIVHVVRC 106 (364)
T ss_pred ----hHHHHHHHHHHHH--HhCCEEEEEEeC
Confidence 2233333333333 357999999554
No 195
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.74 E-value=8.8e-08 Score=99.12 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=70.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCccc------------------------c------cCCCCceeEEEEEEeEECCeEEE
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTE------------------------T------DAFQPATDCIREVKGSVNGIKVT 217 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~------------------------v------s~~~~~Tt~~~~~~~~~~G~~l~ 217 (791)
+|+|+|..|+|||||+.+|+.....+ + ....+.|.+.......+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321100 0 01123455666677788999999
Q ss_pred EEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc------cCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 218 FIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI------SMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 218 LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~------t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
|+||||..+. ...+...+ ..+|++++|++.... .........+... ..++ .+++++|
T Consensus 81 liDtpG~~~~-----------~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiiv 143 (219)
T cd01883 81 ILDAPGHRDF-----------VPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVA 143 (219)
T ss_pred EEECCChHHH-----------HHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEE
Confidence 9999997421 11222223 357999999665432 1111222333222 2222 2578999
Q ss_pred EeccCCCC
Q 003857 292 MTHSSSTL 299 (791)
Q Consensus 292 LTK~D~l~ 299 (791)
+||+|+..
T Consensus 144 vNK~Dl~~ 151 (219)
T cd01883 144 VNKMDDVT 151 (219)
T ss_pred EEcccccc
Confidence 99999874
No 196
>PLN03126 Elongation factor Tu; Provisional
Probab=98.73 E-value=1.6e-07 Score=108.27 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=72.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccc---------------cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCcc
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTET---------------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~v---------------s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~ 228 (791)
...++|+++|.+++|||||+|.|++....+. ....+.|.+........++..+.||||||..+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH--
Confidence 3448999999999999999999985322111 11123344444455566788999999999842
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 299 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l~ 299 (791)
....+...+ ..+|++++|++.+.- ......+.+..+.. . ..+ +|+++||+|+..
T Consensus 157 ---------f~~~~~~g~--~~aD~ailVVda~~G-~~~qt~e~~~~~~~-~----gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 ---------YVKNMITGA--AQMDGAILVVSGADG-PMPQTKEHILLAKQ-V----GVPNMVVFLNKQDQVD 211 (478)
T ss_pred ---------HHHHHHHHH--hhCCEEEEEEECCCC-CcHHHHHHHHHHHH-c----CCCeEEEEEecccccC
Confidence 222222223 357999999654422 11223344443332 2 245 788999999863
No 197
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.73 E-value=8.9e-08 Score=94.61 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=69.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE-EEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~-~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..++|+|+|.+|||||||+|.+++.... +....+++.. .......+.| ..+.++||+|-..... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~--- 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL--------L--- 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc--------c---
Confidence 3489999999999999999999986643 1223343322 2222334455 5678899998753310 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++... ....+...+. .+......|+++|.||+|+.
T Consensus 71 ~~~~~--~~~d~~llv~d~~~~~---s~~~~~~~~~-~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 71 NDAEL--AACDVACLVYDSSDPK---SFSYCAEVYK-KYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred chhhh--hcCCEEEEEEeCCCHH---HHHHHHHHHH-HhccCCCCeEEEEEEccccc
Confidence 01112 3579999996553321 1112222222 22222257999999999975
No 198
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.73 E-value=8.1e-08 Score=113.23 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=72.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|+|||||+|+|.|...... ....+.|.++........+..+.||||||.. .....+..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-----------HHHHHHHh
Confidence 4799999999999999999998652211 1122345555555566778999999999962 12222222
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
.+ ..+|++++|++++... .....+.+..+. .+| .+ +++|+||+|+.
T Consensus 70 g~--~~aD~aILVVDa~~G~-~~qT~ehl~il~-~lg----i~~iIVVlNK~Dlv 116 (581)
T TIGR00475 70 GG--GGIDAALLVVDADEGV-MTQTGEHLAVLD-LLG----IPHTIVVITKADRV 116 (581)
T ss_pred hh--ccCCEEEEEEECCCCC-cHHHHHHHHHHH-HcC----CCeEEEEEECCCCC
Confidence 23 4679999996665321 112223333332 222 45 99999999986
No 199
>PRK00049 elongation factor Tu; Reviewed
Probab=98.73 E-value=1e-07 Score=107.51 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=74.7
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCc------ccc---------cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTK------TET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~------a~v---------s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
....++|+++|..++|||||+++|++... ... ....+.|.+........++..++||||||..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH--
Confidence 34558999999999999999999986311 000 0123445555555556678899999999983
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE-EEEeccCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI-LVMTHSSST 298 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI-VVLTK~D~l 298 (791)
+....+...+ ..+|++++|++.... ....+.+.+..+... ..+.+ +++||+|+.
T Consensus 87 ---------~f~~~~~~~~--~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~-----g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 ---------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTREHILLARQV-----GVPYIVVFLNKCDMV 141 (396)
T ss_pred ---------HHHHHHHhhh--ccCCEEEEEEECCCC-CchHHHHHHHHHHHc-----CCCEEEEEEeecCCc
Confidence 1222333333 467999999655432 222344555554432 35655 689999986
No 200
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.72 E-value=2.2e-08 Score=107.65 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=81.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-EEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..|-+||-||+|||||+|+|...+. .+..++-+|-.+.......++. .++|.|.||+.... ..|+..-..+-+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA----h~nkGlG~~FLrH 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA----HMNKGLGYKFLRH 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc----cccCcccHHHHHH
Confidence 3788999999999999999997654 6666766676665554444444 49999999998763 3355555555555
Q ss_pred HhcCCCCEEEEEEeccCccCCCC--cH-HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFS--DF-PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~--D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ +...++||++++....... +. .+...+...-..-..++.+||.||+|..
T Consensus 272 iE--R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 272 IE--RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred HH--hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 53 4489999987776522111 11 1222222221112357899999999975
No 201
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.72 E-value=4.4e-08 Score=95.84 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=66.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|+|||||+|++.+...... ..+++.........+++. .+.++||||...... +..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE--YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------------LRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc------------ccc
Confidence 4899999999999999999987653221 223332232233344554 577999999754310 111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
......|++++|.+++.... ..+. ..+..+... ....|+++|.||+|+.
T Consensus 67 -~~~~~~~~~ilv~~~~~~~s-~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~ 117 (174)
T cd04135 67 -LSYPMTDVFLICFSVVNPAS-FQNVKEEWVPELKEY---APNVPYLLVGTQIDLR 117 (174)
T ss_pred -ccCCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence 11146799999965543311 0111 123333332 2247899999999975
No 202
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.71 E-value=1.9e-07 Score=94.82 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=71.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCc-eeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~-Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..++|+|+|..||||||+++++.+.... ....++ +.+.......+++ ..+.|+||||.... ..+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~l~-- 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF--------CTIF-- 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHH--
Confidence 3489999999999999999999864321 111111 2233333344555 57889999998421 2222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+. ..+|++|+|.+++....-..-...+..+.... -..|+++|.||.|+.
T Consensus 73 -~~~~--~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~ 123 (189)
T cd04121 73 -RSYS--RGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLA 123 (189)
T ss_pred -HHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccch
Confidence 2233 36799999977764321111123444444432 247999999999985
No 203
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.71 E-value=6.8e-08 Score=116.04 Aligned_cols=113 Identities=15% Similarity=0.041 Sum_probs=75.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc-----ccC------------CCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE-----TDA------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~-----vs~------------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
.+|+|+|.+|+|||||+|+|+.....+ +.. ..+.|.+.......+++..++||||||..+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 599999999999999999997533221 111 12345556667778899999999999996531
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.. +...+ ...|++++|++.... ....+..+++.+.+. ..+.++++||+|+.
T Consensus 90 ------~~----~~~~l--~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~ 140 (689)
T TIGR00484 90 ------VE----VERSL--RVLDGAVAVLDAVGG-VQPQSETVWRQANRY-----EVPRIAFVNKMDKT 140 (689)
T ss_pred ------HH----HHHHH--HHhCEEEEEEeCCCC-CChhHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11 22233 235999999654332 122334555544432 47899999999987
No 204
>PRK00007 elongation factor G; Reviewed
Probab=98.71 E-value=9e-08 Score=115.06 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=75.9
Q ss_pred eEEEEEeecCCchHHHHhHhh---CCCccc--cc------------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIF---DQTKTE--TD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl---G~~~a~--vs------------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
.+|+|+|.+|+|||||+|+|+ |..... +. ...+.|.+.......+.+..++||||||..+.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 599999999999999999997 432111 11 12335555666677889999999999998432
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++.+.+ ..+|++++|++.... ....+..++..+.+. +.+.++++||+|...
T Consensus 89 ---------~~ev~~al--~~~D~~vlVvda~~g-~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ---------TIEVERSL--RVLDGAVAVFDAVGG-VEPQSETVWRQADKY-----KVPRIAFVNKMDRTG 141 (693)
T ss_pred ---------HHHHHHHH--HHcCEEEEEEECCCC-cchhhHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 11223333 235899999554322 223455666665543 478899999999873
No 205
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.70 E-value=1.6e-07 Score=108.22 Aligned_cols=116 Identities=17% Similarity=0.077 Sum_probs=71.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccC--------------------------------CCCceeEEEEEEeEEC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDA--------------------------------FQPATDCIREVKGSVN 212 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~--------------------------------~~~~Tt~~~~~~~~~~ 212 (791)
..++|+++|..++|||||++.|+.....+... -.+.|.+........+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 34899999999999999999998654332210 0112334444455667
Q ss_pred CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 213 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 213 G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
+..++||||||..+ ....+...+ ..+|++++|++.+.. ....+.+.+. +...++ .+++|+++
T Consensus 106 ~~~i~~iDTPGh~~-----------f~~~~~~~l--~~aD~allVVDa~~G-~~~qt~~~~~-l~~~lg---~~~iIvvv 167 (474)
T PRK05124 106 KRKFIIADTPGHEQ-----------YTRNMATGA--STCDLAILLIDARKG-VLDQTRRHSF-IATLLG---IKHLVVAV 167 (474)
T ss_pred CcEEEEEECCCcHH-----------HHHHHHHHH--hhCCEEEEEEECCCC-ccccchHHHH-HHHHhC---CCceEEEE
Confidence 88999999999521 111222223 467999999655422 1112223332 233333 25789999
Q ss_pred eccCCC
Q 003857 293 THSSST 298 (791)
Q Consensus 293 TK~D~l 298 (791)
||+|+.
T Consensus 168 NKiD~~ 173 (474)
T PRK05124 168 NKMDLV 173 (474)
T ss_pred Eeeccc
Confidence 999986
No 206
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.70 E-value=5.8e-08 Score=95.10 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=66.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.+|+|+|.+|||||||++.+.+...... ..+++.........+.+ ..+.++||||..+.. .+. ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYD--------RLR---PL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccccceEEEEEECCEEEEEEEEeCCCchhhh--------hcc---cc
Confidence 5899999999999999999997543221 12222221122333444 467899999974321 110 01
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...|++++|.+++.... ..+. ..+..+.... ...|+++|.||+|+..
T Consensus 69 ~~--~~~d~~i~v~~~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 119 (175)
T cd01870 69 SY--PDTDVILMCFSIDSPDS-LENIPEKWTPEVKHFC---PNVPIILVGNKKDLRN 119 (175)
T ss_pred cc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEeeChhccc
Confidence 12 46789998866664321 0111 1222233221 2479999999999763
No 207
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.70 E-value=1.3e-07 Score=97.28 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=64.1
Q ss_pred EEEEEeecCCchHHHHhHhhCCCccccc---------CC---------CCceeEEEEEEeEE-----CCeEEEEEeCCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETD---------AF---------QPATDCIREVKGSV-----NGIKVTFIDTPGF 224 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs---------~~---------~~~Tt~~~~~~~~~-----~G~~l~LIDTPGl 224 (791)
+|+|+|..|+|||||++.|++....... .+ ...|-........+ ....+.|+||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864432210 00 01111111122222 2368999999998
Q ss_pred CCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 225 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 225 ~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+.. .....++ ..+|++++|++...... .....+++.+.. ...+.++|+||+|...
T Consensus 82 ~~f~-----------~~~~~~~--~~aD~~llVvD~~~~~~-~~~~~~~~~~~~-----~~~p~iiviNK~D~~~ 137 (213)
T cd04167 82 VNFM-----------DEVAAAL--RLSDGVVLVVDVVEGVT-SNTERLIRHAIL-----EGLPIVLVINKIDRLI 137 (213)
T ss_pred cchH-----------HHHHHHH--HhCCEEEEEEECCCCCC-HHHHHHHHHHHH-----cCCCEEEEEECcccCc
Confidence 6431 1122223 24699999965532211 111222222221 1378999999999874
No 208
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.70 E-value=5.7e-09 Score=106.86 Aligned_cols=118 Identities=24% Similarity=0.318 Sum_probs=70.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCC------Ccccc--cCCCCcee----------EEEEEEe-----------------EE
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ------TKTET--DAFQPATD----------CIREVKG-----------------SV 211 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~------~~a~v--s~~~~~Tt----------~~~~~~~-----------------~~ 211 (791)
..|++||+|||||||++.+|..+ .+..+ +.+..+.. .+..+.. ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 57999999999999999999532 22222 12222111 1111110 11
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
++.+++||||||+... +...+.++++++....++-+++|++..... .+...+..+.+.++ ..-+|
T Consensus 82 ~~~D~vlIDT~Gr~~~-------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~---~~~~~~~~~~~~~~-----~~~lI 146 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPR-------DEELLEELKKLLEALNPDEVHLVLSATMGQ---EDLEQALAFYEAFG-----IDGLI 146 (196)
T ss_dssp TTSSEEEEEE-SSSST-------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGG---HHHHHHHHHHHHSS-----TCEEE
T ss_pred cCCCEEEEecCCcchh-------hHHHHHHHHHHhhhcCCccceEEEecccCh---HHHHHHHHHhhccc-----CceEE
Confidence 3467999999999643 455556666666555788999995544322 33344444444432 34568
Q ss_pred EeccCCCC
Q 003857 292 MTHSSSTL 299 (791)
Q Consensus 292 LTK~D~l~ 299 (791)
+||.|...
T Consensus 147 lTKlDet~ 154 (196)
T PF00448_consen 147 LTKLDETA 154 (196)
T ss_dssp EESTTSSS
T ss_pred EEeecCCC
Confidence 99999863
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.70 E-value=8.7e-08 Score=107.07 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=71.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC------Ccccc--cCCCCcee----------EEEEEEe--------------EECC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ------TKTET--DAFQPATD----------CIREVKG--------------SVNG 213 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~------~~a~v--s~~~~~Tt----------~~~~~~~--------------~~~G 213 (791)
+.+|+|+|++||||||++.+|.+. .+..+ +.+..... .+..+.. ...+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 468999999999999999999632 22211 11110000 0000000 0124
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
.+++||||||.... +...+.++.+++....+|.++|| +++.+.. .-+..+.+.|.. -...-+|||
T Consensus 321 ~DvVLIDTaGRs~k-------d~~lm~EL~~~lk~~~PdevlLV--LsATtk~----~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 321 VDYILIDTAGKNYR-------ASETVEEMIETMGQVEPDYICLT--LSASMKS----KDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred CCEEEEeCccccCc-------CHHHHHHHHHHHhhcCCCeEEEE--ECCccCh----HHHHHHHHHhcC--CCCCEEEEE
Confidence 68999999999643 45556777777766678999999 5554321 222334444543 145567999
Q ss_pred ccCCCC
Q 003857 294 HSSSTL 299 (791)
Q Consensus 294 K~D~l~ 299 (791)
|.|...
T Consensus 386 KLDET~ 391 (436)
T PRK11889 386 KFDETA 391 (436)
T ss_pred cccCCC
Confidence 999874
No 210
>PRK12739 elongation factor G; Reviewed
Probab=98.69 E-value=1e-07 Score=114.64 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=75.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcc-----ccc------------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCcc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKT-----ETD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a-----~vs------------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~ 228 (791)
-.+|+|+|..|+|||||+|+|+..... .+. ...+.|.+.......+++..++||||||..+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 368999999999999999999743211 111 12345555666777889999999999998432
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++...+ ...|++++|++.... ....+..++..+.+. +.+.|+++||+|..
T Consensus 87 ----------~~e~~~al--~~~D~~ilVvDa~~g-~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~ 138 (691)
T PRK12739 87 ----------TIEVERSL--RVLDGAVAVFDAVSG-VEPQSETVWRQADKY-----GVPRIVFVNKMDRI 138 (691)
T ss_pred ----------HHHHHHHH--HHhCeEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11233333 235999999554321 222344555555443 47889999999987
No 211
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.69 E-value=5.6e-08 Score=104.97 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=67.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..+++|||.|+||||||+|+|++.+ ..+.+++.+|..+.....+.+|..+.|+|+||+......+..+..+++..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv---- 137 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV---- 137 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeee----
Confidence 4699999999999999999999865 45566777888888888999999999999999987643321112222222
Q ss_pred HhcCCCCEEEEEEecc
Q 003857 246 IRRSPPDIVLYFERLD 261 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld 261 (791)
+ ..+|+|++|+++.
T Consensus 138 ~--R~ADlIiiVld~~ 151 (365)
T COG1163 138 A--RNADLIIIVLDVF 151 (365)
T ss_pred e--ccCCEEEEEEecC
Confidence 2 2579999994443
No 212
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.69 E-value=1e-07 Score=115.19 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
...+.+|+|+|.+|+|||||+|+|.+..... +.....|..+..+...+.+..++|+||||..+.. ..+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~--------~m~--- 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT--------AMR--- 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEEEEECCEEEEEEECCCCccch--------hHH---
Confidence 3456899999999999999999998765432 3333455556566677788999999999985431 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+.. ..+|++++|++++.... ....+.+..+.. ...|+||++||+|+.
T Consensus 355 ~rga--~~aDiaILVVdAddGv~-~qT~e~i~~a~~-----~~vPiIVviNKiDl~ 402 (787)
T PRK05306 355 ARGA--QVTDIVVLVVAADDGVM-PQTIEAINHAKA-----AGVPIIVAINKIDKP 402 (787)
T ss_pred Hhhh--hhCCEEEEEEECCCCCC-HhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence 1222 34699999976653211 122233333222 247899999999985
No 213
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.69 E-value=8.8e-08 Score=94.38 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=68.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|+|||||++++.+.... ....+++.+.......+++ ..+.|+||||..... .+. ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~---~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD--------KLR---PL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc--------ccc---cc
Confidence 48999999999999999999865422 2233444344334445555 477899999984321 111 11
Q ss_pred HHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t-~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++... ........+..+.... ...|+++|.||+|+..
T Consensus 68 ~~--~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 118 (173)
T cd04130 68 CY--PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRT 118 (173)
T ss_pred cc--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence 22 4679999996554321 1000012233333321 1378999999999863
No 214
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.68 E-value=7.4e-08 Score=96.91 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=67.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+|+|+|.+|||||||++.+++...... ..++...........++ ..+.|+||||.... ..+. . .+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--------~~l~-~--~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF--------DRLR-S--LS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhc--------cccc-c--cc
Confidence 799999999999999999997654322 11222121111223344 57899999997432 1111 1 11
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ..+|++++|.+++.... .... ..+..+.... ...|+++|.||+|+..
T Consensus 69 ~--~~a~~~ilv~dv~~~~s-f~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~ 118 (189)
T cd04134 69 Y--ADTDVIMLCFSVDSPDS-LENVESKWLGEIREHC---PGVKLVLVALKCDLRE 118 (189)
T ss_pred c--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 2 46799999977765431 1111 2333443322 2478999999999863
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=98.67 E-value=1.4e-07 Score=104.21 Aligned_cols=120 Identities=23% Similarity=0.338 Sum_probs=72.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhC------CCcccc--cCCCCcee------------EEEEEE---------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQPATD------------CIREVK---------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG------~~~a~v--s~~~~~Tt------------~~~~~~---------------~ 209 (791)
.+..|+|+|++|+||||++.+|.. ..+..+ +.+..... .+.... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 457999999999999999998853 222222 11111000 000000 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
...+.+++||||||.... +...+.++++......||.++|| +++.+. ......++.+.+.+ ....
T Consensus 219 ~~~~~DvVLIDTaGr~~~-------~~~lm~eL~~i~~~~~pd~~iLV--l~a~~g-~d~~~~a~~f~~~~-----~~~g 283 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHT-------DANLMDELKKIVRVTKPDLVIFV--GDALAG-NDAVEQAREFNEAV-----GIDG 283 (336)
T ss_pred HhCCCCEEEEECCCccCC-------cHHHHHHHHHHHHhhCCceEEEe--eccccc-hhHHHHHHHHHhcC-----CCCE
Confidence 124678999999999753 45566777776655678999999 554432 22333344443332 3466
Q ss_pred EEEeccCCCC
Q 003857 290 LVMTHSSSTL 299 (791)
Q Consensus 290 VVLTK~D~l~ 299 (791)
+|+||.|...
T Consensus 284 iIlTKlD~~~ 293 (336)
T PRK14974 284 VILTKVDADA 293 (336)
T ss_pred EEEeeecCCC
Confidence 7999999874
No 216
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.67 E-value=9.3e-08 Score=103.97 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=79.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE-ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
-|-+||-||||||||||++...+. .+..++-+|-.+.-.... ..+..+++.|.||+.+....+.-.-.+.++-|.+|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt- 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT- 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence 577999999999999999997553 345564555544433333 35667999999999887544323334444444443
Q ss_pred hcCCCCEEEEEEeccCccCC--CCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMG--FSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~--~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++++|++++....+ ..+. .+...|..+-..-..++.+||+||+|...
T Consensus 239 -----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 239 -----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred -----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 588899777654321 1122 23344444322234689999999999663
No 217
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.67 E-value=1.7e-07 Score=105.96 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=70.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc--------------------------------CCCCceeEEEEEEeEECCe
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD--------------------------------AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs--------------------------------~~~~~Tt~~~~~~~~~~G~ 214 (791)
++|+++|..++|||||++.|+.....+.. ...+.|.+.......+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999744322110 0112344555555677889
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEec
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 294 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK 294 (791)
++.||||||..+. ...+...+ ..+|++++|++...- ......+.+..+. .++ .+++++++||
T Consensus 81 ~~~liDtPGh~~f-----------~~~~~~~~--~~aD~allVVda~~G-~~~qt~~~~~~~~-~~~---~~~iivviNK 142 (406)
T TIGR02034 81 KFIVADTPGHEQY-----------TRNMATGA--STADLAVLLVDARKG-VLEQTRRHSYIAS-LLG---IRHVVLAVNK 142 (406)
T ss_pred EEEEEeCCCHHHH-----------HHHHHHHH--hhCCEEEEEEECCCC-CccccHHHHHHHH-HcC---CCcEEEEEEe
Confidence 9999999996321 11222223 357999999655422 1123333333333 333 2568899999
Q ss_pred cCCC
Q 003857 295 SSST 298 (791)
Q Consensus 295 ~D~l 298 (791)
+|..
T Consensus 143 ~D~~ 146 (406)
T TIGR02034 143 MDLV 146 (406)
T ss_pred cccc
Confidence 9986
No 218
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.66 E-value=2.4e-07 Score=96.72 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCC---------------CCceeEEEEEEeEEC----------CeEEEEEeCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAF---------------QPATDCIREVKGSVN----------GIKVTFIDTP 222 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~---------------~~~Tt~~~~~~~~~~----------G~~l~LIDTP 222 (791)
+|+++|..++|||||+++|+.......... .+.|-....+...+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975432221111 011111111122222 6789999999
Q ss_pred CCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 223 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 223 Gl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
|..+. .. .....+ ..+|++++|+++...- ......+++.... . ..+.++|+||+|+.
T Consensus 82 G~~~f-------~~----~~~~~l--~~aD~~ilVvD~~~g~-~~~t~~~l~~~~~---~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF-------SS----EVTAAL--RLCDGALVVVDAVEGV-CVQTETVLRQALK---E--RVKPVLVINKIDRL 138 (222)
T ss_pred Ccccc-------HH----HHHHHH--HhcCeeEEEEECCCCC-CHHHHHHHHHHHH---c--CCCEEEEEECCCcc
Confidence 99643 11 222223 3469999996554321 1122233333322 1 36899999999986
No 219
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=3.8e-08 Score=96.19 Aligned_cols=57 Identities=35% Similarity=0.503 Sum_probs=47.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
...+|+++|.+||||||++|+|++.....++..+++|+....+.. +..+.||||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 347999999999999999999999888888777677777665443 356899999996
No 220
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.64 E-value=7e-08 Score=105.00 Aligned_cols=127 Identities=26% Similarity=0.309 Sum_probs=72.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhh------CCCcccc--cCCCCce------------eEEEEEE---------------
Q 003857 164 DFSIRILVLGKTGVGKSATINSIF------DQTKTET--DAFQPAT------------DCIREVK--------------- 208 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLl------G~~~a~v--s~~~~~T------------t~~~~~~--------------- 208 (791)
..+..|++||-+|+||||+|.+|. |..+... +.|.++- ..+....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457899999999999999999995 2222221 1111100 0111110
Q ss_pred eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 003857 209 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 209 ~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
..-.|++++||||+|..+++.+.+.+-+++.+.+++.+ ...||-+++| +|+.+.. +-..-.+.+.+.. . -.
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~-~~ap~e~llv--lDAttGq-nal~QAk~F~eav----~-l~ 287 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD-PDAPHEILLV--LDATTGQ-NALSQAKIFNEAV----G-LD 287 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc-CCCCceEEEE--EEcccCh-hHHHHHHHHHHhc----C-Cc
Confidence 12356899999999998875443333333333333222 1247889999 6665431 2223344444443 2 45
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
-+|+||+|-..
T Consensus 288 GiIlTKlDgtA 298 (340)
T COG0552 288 GIILTKLDGTA 298 (340)
T ss_pred eEEEEecccCC
Confidence 67999999653
No 221
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.64 E-value=1.5e-07 Score=94.35 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=67.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|||||||++.+.+.... . ...++..........+++ ..+.|+||||-... ..+ .. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~--------~~~-~~--~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-E-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY--------DNV-RP--L 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-C-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhh--------hhc-ch--h
Confidence 68999999999999999999875422 1 222332222222334444 56889999996321 111 11 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+. ..+|++++|.+++.... ... ...+..+.+... ..++++|.||+|+.
T Consensus 69 ~~--~~a~~~ilvfdit~~~S-f~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~ 118 (178)
T cd04131 69 CY--PDSDAVLICFDISRPET-LDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR 118 (178)
T ss_pred hc--CCCCEEEEEEECCChhh-HHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence 22 46799999977654321 111 123334444321 36899999999975
No 222
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.64 E-value=2.3e-07 Score=92.26 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=67.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||+..+.+.... ....+++.........+.+ ..+.|+||||.... ..+. ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--------DRLR---PL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh--------hhhh---hh
Confidence 68999999999999999999864321 1222333222222334445 57889999997322 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|.+++.... .... ..+..+... ....|+++|.||+|+.
T Consensus 69 ~~--~~~d~~ilv~d~~~~~s-f~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~ 118 (174)
T cd01871 69 SY--PQTDVFLICFSLVSPAS-FENVRAKWYPEVRHH---CPNTPIILVGTKLDLR 118 (174)
T ss_pred hc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh---CCCCCEEEEeeChhhc
Confidence 23 46799999977754321 1111 122333332 1247999999999975
No 223
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.64 E-value=2e-07 Score=109.94 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-EEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..+.+|+++|.+|+|||||+|+|.+...... ...+.|..+..+...+.+. .++|+||||..+.. ..+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~-e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------~~r--- 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG-EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------SMR--- 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc-cCCceeecceEEEEEECCCcEEEEEECCCCcchh--------hHH---
Confidence 4557999999999999999999998654432 2334455555555566544 89999999985331 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+.. ...|++++|++++... ..+..+.+.... ....|+++++||+|+.
T Consensus 153 ~rga--~~aDiaILVVda~dgv----~~qT~e~i~~~~--~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 153 ARGA--KVTDIVVLVVAADDGV----MPQTIEAISHAK--AANVPIIVAINKIDKP 200 (587)
T ss_pred Hhhh--ccCCEEEEEEECCCCC----CHhHHHHHHHHH--HcCCCEEEEEECcccc
Confidence 1222 3579999997655321 112233332221 1247899999999985
No 224
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=7.4e-08 Score=104.01 Aligned_cols=62 Identities=29% Similarity=0.391 Sum_probs=50.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
..++|+|+|.|||||||+||+|.+...+.++..+++|+....+.. +..+.|+||||+.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKL 181 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCC
Confidence 358999999999999999999999998888887677776654432 45689999999987753
No 225
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.62 E-value=2.4e-07 Score=111.28 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE----CCeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV----NGIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~----~G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
..+.+|+|+|.+|+|||||+|+|.+..... ....+.|..+..+...+ .+..++|+||||.... .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F--------~--- 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF--------S--- 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH--------H---
Confidence 355799999999999999999998765443 22223343333232222 3589999999997321 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
....+.+ ..+|++++|++++.... ....+.+..+.. ...|+|+++||+|+.
T Consensus 310 ~mr~rg~--~~aDiaILVVDA~dGv~-~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 310 SMRSRGA--NVTDIAILIIAADDGVK-PQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HHHHHHH--HHCCEEEEEEECcCCCC-hhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 1112223 34699999976543211 122233333322 247999999999986
No 226
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.61 E-value=4.2e-07 Score=103.25 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=72.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc-------------------------c-----CCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET-------------------------D-----AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v-------------------------s-----~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++|+++|..++|||||++.|+....... + ...+.|.+.........+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 348999999999999999999974221110 0 1124555666666777889
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC--CCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM--GFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~--~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
.+.|+||||..+ .+..+...+ ..+|++++|++++.... .......+ .+.+.++ ..++++|+
T Consensus 86 ~i~iiDtpGh~~-----------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~---~~~iIVvi 148 (426)
T TIGR00483 86 EVTIVDCPGHRD-----------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG---INQLIVAI 148 (426)
T ss_pred EEEEEECCCHHH-----------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC---CCeEEEEE
Confidence 999999999621 122222222 35799999966654311 01111111 1233333 25788999
Q ss_pred eccCCC
Q 003857 293 THSSST 298 (791)
Q Consensus 293 TK~D~l 298 (791)
||+|+.
T Consensus 149 NK~Dl~ 154 (426)
T TIGR00483 149 NKMDSV 154 (426)
T ss_pred EChhcc
Confidence 999986
No 227
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=5.9e-08 Score=93.52 Aligned_cols=55 Identities=27% Similarity=0.400 Sum_probs=43.7
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
+++++|.+||||||++|+|++.....++...+.|+....+.. ++ .+.|+||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 899999999999999999999887777665555555544333 33 68999999995
No 228
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.61 E-value=7.4e-07 Score=93.07 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=59.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC-Ccccc-cCCCCceeEEEEEEeEE---CCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ-TKTET-DAFQPATDCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~-~~a~v-s~~~~~Tt~~~~~~~~~---~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..|.|+|++++|||||+|.|+|. ..+.+ ....++|+.+......+ .+..++++||||+.+..... ......+..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhhHHHH
Confidence 68999999999999999999998 34544 45567777766555444 36799999999999874321 022222333
Q ss_pred HHHHHhcCCCCEEEEEE
Q 003857 242 VKKFIRRSPPDIVLYFE 258 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~ 258 (791)
+...+ .++++|..
T Consensus 87 l~~ll----ss~~i~n~ 99 (224)
T cd01851 87 LATLL----SSVLIYNS 99 (224)
T ss_pred HHHHH----hCEEEEec
Confidence 33222 47888874
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=2e-07 Score=104.69 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=68.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC----------Ccccc--cCCCCcee-------E-----EEEEE---------eEE
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ----------TKTET--DAFQPATD-------C-----IREVK---------GSV 211 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~----------~~a~v--s~~~~~Tt-------~-----~~~~~---------~~~ 211 (791)
.+..|+++|++||||||++.+|... .+..+ +.+...+. + +.... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999999642 22221 22211111 0 00000 123
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCC-CEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPP-DIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 290 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~-dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIV 290 (791)
.+..++||||||.... +...+.++.+++....+ +-+++| +++.+. . ..+..+...|.. -...-+
T Consensus 253 ~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~~~e~~LV--lsat~~---~-~~~~~~~~~~~~--~~~~~~ 317 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGRDAEFHLA--VSSTTK---T-SDVKEIFHQFSP--FSYKTV 317 (388)
T ss_pred CCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCCCCeEEEE--EcCCCC---H-HHHHHHHHHhcC--CCCCEE
Confidence 5678999999999643 23335566666654443 467888 555442 1 122233333321 135567
Q ss_pred EEeccCCCC
Q 003857 291 VMTHSSSTL 299 (791)
Q Consensus 291 VLTK~D~l~ 299 (791)
||||.|...
T Consensus 318 I~TKlDet~ 326 (388)
T PRK12723 318 IFTKLDETT 326 (388)
T ss_pred EEEeccCCC
Confidence 999999874
No 230
>PLN00023 GTP-binding protein; Provisional
Probab=98.60 E-value=5.7e-07 Score=98.63 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=70.3
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCccccc-CCCCceeEEEEEEeE-------------ECCeEEEEEeCCCCCCcc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGS-------------VNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~~~~Tt~~~~~~~~-------------~~G~~l~LIDTPGl~d~~ 228 (791)
....++|+|+|..|||||||++.+.+....... ..-+.+..+..+... ...+.+.|+||+|-...
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf- 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY- 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh-
Confidence 344589999999999999999999975432111 111111111222211 01356899999997322
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc----------cccccEEEEEeccCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT----------AIWFNTILVMTHSSST 298 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~----------~i~k~vIVVLTK~D~l 298 (791)
..+. ..++ .+++++++|.+++.......-...++.+....+. ....+++||.||+|+.
T Consensus 97 -------rsL~---~~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 -------KDCR---SLFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred -------hhhh---HHhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 1111 1223 4679999997766532111112344444443210 0136899999999986
Q ss_pred C
Q 003857 299 L 299 (791)
Q Consensus 299 ~ 299 (791)
.
T Consensus 165 ~ 165 (334)
T PLN00023 165 P 165 (334)
T ss_pred c
Confidence 4
No 231
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.60 E-value=2.7e-07 Score=93.05 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=69.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+++|.+|||||||++.+....... .+.++..........+++ ..+.|+||+|-... ..+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~--~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~--------~~~~--- 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------DNVR--- 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCceeeeeEEEEEECCEEEEEEEEECCCchhh--------Hhhh---
Confidence 35899999999999999999998754221 222332222222334444 47899999997321 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.+++.... ... ...++.+.+.. . ..++++|.||+|+.
T Consensus 71 ~~~~--~~ad~~ilvyDit~~~S-f~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~ 122 (182)
T cd04172 71 PLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLR 122 (182)
T ss_pred hhhc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC-C--CCCEEEEeEChhhh
Confidence 1122 46799999977654321 111 12333444432 2 47899999999974
No 232
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.60 E-value=3.9e-07 Score=91.59 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=65.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
++|+++|.+|||||||++.+++..... .+.++.. +........++ ..+.|+||+|-... .... .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~~~---~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF--------INML---P 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH--------HHhh---H
Confidence 489999999999999999998754321 1222221 23223344555 57899999997321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|.+++....-..-...+..+.... .. ..+ ++|.||+|+.
T Consensus 68 ~~~--~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~-~~p-ilVgnK~Dl~ 117 (182)
T cd04128 68 LVC--NDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KT-AIP-ILVGTKYDLF 117 (182)
T ss_pred HHC--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC-CCE-EEEEEchhcc
Confidence 223 46799999966644321001112333333321 11 234 6889999986
No 233
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=3.8e-08 Score=99.14 Aligned_cols=55 Identities=27% Similarity=0.359 Sum_probs=42.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc--------ccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK--------TETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~--------a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
.+|+|+|.+|||||||||+|++... ..++..+++|+....+... ..+.||||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 5899999999999999999998653 2345555566667666542 25799999997
No 234
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.59 E-value=4.7e-07 Score=107.39 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=69.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--cCCCCceeEEEEEEeE-ECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~~Tt~~~~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
+.|.++|..++|||||+|+|.|.+.... ....+.|.+....... .++..+.||||||..+ ....+.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~ 69 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNML 69 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHH
Confidence 3689999999999999999998642222 1122444444333332 2577899999999721 222222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+ ..+|++++|++++.. ......+.+..+. .+| ..+++||+||+|+.
T Consensus 70 ~g~--~~~D~~lLVVda~eg-~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv 117 (614)
T PRK10512 70 AGV--GGIDHALLVVACDDG-VMAQTREHLAILQ-LTG---NPMLTVALTKADRV 117 (614)
T ss_pred HHh--hcCCEEEEEEECCCC-CcHHHHHHHHHHH-HcC---CCeEEEEEECCccC
Confidence 223 467999999766532 1123334444333 223 13467999999986
No 235
>PRK12288 GTPase RsgA; Reviewed
Probab=98.57 E-value=1.2e-07 Score=105.11 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=45.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCC-------ceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~-------~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
.++|+|.||||||||||+|+++....++.+.. +|+....+....++ .||||||+..-...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l~ 273 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGLW 273 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccCC
Confidence 58999999999999999999998887765533 45455544443233 59999999987653
No 236
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.57 E-value=4.6e-07 Score=97.37 Aligned_cols=120 Identities=27% Similarity=0.316 Sum_probs=68.6
Q ss_pred CceEEEEEeecCCchHHHHhHhh------CCCccccc--CCCCce---------e-EEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPAT---------D-CIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~~~~T---------t-~~~~~~-----------------~ 209 (791)
.+..|+|+|++|+||||++.+|. |..+..++ .+.... . .+..+. .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999985 23332221 111100 0 011010 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcC------CCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS------PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 283 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~------~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~ 283 (791)
...+++++||||||.... +...+.+++++.... .+|.+++|++.. +. ..+...+..+.+.+
T Consensus 151 ~~~~~D~ViIDT~G~~~~-------d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~-~~~~~~~~~f~~~~--- 217 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQN-------KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TG-QNALEQAKVFNEAV--- 217 (272)
T ss_pred HHCCCCEEEEeCCCCCcc-------hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CC-HHHHHHHHHHHhhC---
Confidence 125689999999999753 344445555443322 389999995553 32 22323333333322
Q ss_pred ccccEEEEEeccCCCC
Q 003857 284 IWFNTILVMTHSSSTL 299 (791)
Q Consensus 284 i~k~vIVVLTK~D~l~ 299 (791)
...-+|+||.|...
T Consensus 218 --~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 218 --GLTGIILTKLDGTA 231 (272)
T ss_pred --CCCEEEEEccCCCC
Confidence 34678999999864
No 237
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.57 E-value=4e-07 Score=95.05 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=66.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|||.+|||||||++.+.+..... .+.|+..........+++ +.+.|+||+|-... ..+. . .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~--------~~l~-~--~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY--------DNVR-P--L 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHH--------HHHh-H--H
Confidence 689999999999999999998754221 222333222222334444 46788999997321 1111 1 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH-H-HHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF-P-LLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~-~-llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ...|++|+|.+++.... .... . ....+... . ...|+++|.||+|+.
T Consensus 69 ~~--~~~d~illvfdis~~~S-f~~i~~~w~~~~~~~-~--~~~piiLVgnK~DL~ 118 (222)
T cd04173 69 AY--PDSDAVLICFDISRPET-LDSVLKKWQGETQEF-C--PNAKVVLVGCKLDMR 118 (222)
T ss_pred hc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh-C--CCCCEEEEEECcccc
Confidence 12 46799999976654321 0111 1 11122221 1 247899999999986
No 238
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.56 E-value=1.3e-07 Score=101.45 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=49.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
..++|+|+|.|||||||+||+|.+.....++..+++|+....+.. +..+.|+||||+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCC
Confidence 358999999999999999999999988888877666666654443 34689999999976643
No 239
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.56 E-value=4.4e-07 Score=107.26 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=70.8
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccc-----c----------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccch
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTET-----D----------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 232 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~v-----s----------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~ 232 (791)
+|+|+|..++|||||+++|+....... . ...+.|-........+++..+.||||||..+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF----- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF----- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-----
Confidence 799999999999999999985321110 0 01234444555567788999999999998543
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 233 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 233 ~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...+..++ ..+|.+++|++.... ........++.+.. ...|.++|+||+|..
T Consensus 78 ------~~ev~~~l--~~aD~alLVVDa~~G-~~~qT~~~l~~a~~-----~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 78 ------GGEVERVL--GMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRP 129 (594)
T ss_pred ------HHHHHHHH--HhCCEEEEEEeCCCC-CcHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 11223333 346999999555321 11122233333332 246889999999975
No 240
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.56 E-value=6.8e-07 Score=91.03 Aligned_cols=117 Identities=19% Similarity=0.116 Sum_probs=68.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|..|||||||+|++.+......... ..+........... ..++.++||+|..+. ..++ ..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~--------~~~~---~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP-TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY--------RSLR---PE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCC-ceeeeeEEEEEEeCCCEEEEEeecCCCHHHH--------HHHH---HH
Confidence 7999999999999999999998765543221 11112222111222 467899999999322 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t-~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+. .+++.+++|.+..... ....-......+....+ ...++++|.||+|+..
T Consensus 74 y~--~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 74 YY--RGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred Hh--cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 22 4678888885554322 11111123333333322 2478999999999874
No 241
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.55 E-value=2.8e-07 Score=102.68 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=71.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhC------CCcccc--cCCCCcee----------EEEEEEe--------------EEC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQPATD----------CIREVKG--------------SVN 212 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG------~~~a~v--s~~~~~Tt----------~~~~~~~--------------~~~ 212 (791)
..-.|+|+|++|+||||++..|.. ..+..+ +.+.++.. .+..+.. ...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 356899999999999999999963 222222 22222110 0000000 013
Q ss_pred CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 213 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 213 G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
+.+++||||||.... +...+.+++.+.....+|.+++| +++... ..++.. +...|.. -...-+||
T Consensus 285 ~~D~VLIDTAGr~~~-------d~~~l~EL~~l~~~~~p~~~~LV--Lsag~~---~~d~~~-i~~~f~~--l~i~glI~ 349 (407)
T PRK12726 285 CVDHILIDTVGRNYL-------AEESVSEISAYTDVVHPDLTCFT--FSSGMK---SADVMT-ILPKLAE--IPIDGFII 349 (407)
T ss_pred CCCEEEEECCCCCcc-------CHHHHHHHHHHhhccCCceEEEE--CCCccc---HHHHHH-HHHhcCc--CCCCEEEE
Confidence 579999999999643 45666777777666678888888 554321 223333 3333432 13556799
Q ss_pred eccCCCC
Q 003857 293 THSSSTL 299 (791)
Q Consensus 293 TK~D~l~ 299 (791)
||.|...
T Consensus 350 TKLDET~ 356 (407)
T PRK12726 350 TKMDETT 356 (407)
T ss_pred EcccCCC
Confidence 9999874
No 242
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.55 E-value=2.8e-07 Score=89.00 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=71.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
+|+|+|..|||||||++.+.+..... ...++. .+.........+. .+.|+||+|.... ..... .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~---~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF--------DSLRD---I 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG--------HHHHH---H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--ccccccccccccccccccccccccccccccccccc--------ccccc---c
Confidence 69999999999999999998764222 122222 2344444445454 6899999996321 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ...|++++|.+++....-..-...+..+..... ...|+++|.||.|+..
T Consensus 68 ~~--~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 68 FY--RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HH--TTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred cc--ccccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 23 456999999777654321122245555555544 1368999999999764
No 243
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.55 E-value=8e-08 Score=105.55 Aligned_cols=61 Identities=31% Similarity=0.444 Sum_probs=52.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
..+++|||-|||||||+||+|.|+..+.++..++.|+..+.+... ..+.|+||||+.....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~~ 192 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPKF 192 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCCc
Confidence 478999999999999999999999999999887777777777653 3489999999987643
No 244
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.55 E-value=5.9e-07 Score=93.72 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=66.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcc-cccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKT-ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a-~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..+..|+|+|.+|+|||||+|.|++.... .+... .++.. . ....+.+++++||||.. ..+...+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~-~g~i~---i-~~~~~~~i~~vDtPg~~----------~~~l~~a 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDI-KGPIT---V-VTGKKRRLTFIECPNDI----------NAMIDIA 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccc-cccEE---E-EecCCceEEEEeCCchH----------HHHHHHH
Confidence 44579999999999999999999976322 22222 22211 1 12367899999999852 1222222
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE-EEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT-ILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v-IVVLTK~D~l~ 299 (791)
..+|++++|++.... ....+..++..+... ..+. ++|+||+|+..
T Consensus 102 ------k~aDvVllviDa~~~-~~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 102 ------KVADLVLLLIDASFG-FEMETFEFLNILQVH-----GFPRVMGVLTHLDLFK 147 (225)
T ss_pred ------HhcCEEEEEEecCcC-CCHHHHHHHHHHHHc-----CCCeEEEEEeccccCC
Confidence 235999999554321 112334455544432 2454 55999999873
No 245
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.54 E-value=1.3e-07 Score=100.04 Aligned_cols=60 Identities=27% Similarity=0.339 Sum_probs=45.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCC-------CceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~-------~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
..++|+|.+|||||||||+|++.....++.+. .+|+....+.. .+ -.||||||+......
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l~ 187 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGLW 187 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCCC
Confidence 48899999999999999999998766654332 25666666655 22 289999999986553
No 246
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.53 E-value=7e-07 Score=91.92 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=68.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEE-------CCeEEEEEeCCCCCCccccchhhhHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSV-------NGIKVTFIDTPGFLPSCVRNVKRNRKI 238 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~-------~G~~l~LIDTPGl~d~~~~~~~~n~~i 238 (791)
++|+++|.+|||||||++.+.+...... ..++.. .+......+ ..+.+.|+||+|-... ..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHH
Confidence 4899999999999999999997643321 112111 111111222 2357899999998422 111
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-----------------ccccccEEEEEeccCCCC
Q 003857 239 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-----------------TAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 239 ~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg-----------------~~i~k~vIVVLTK~D~l~ 299 (791)
...++ .++|++++|.+++....-..-...+..+...-+ .....|+++|-||+|+..
T Consensus 71 ---~~~~y--r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 71 ---RAVFY--NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred ---HHHHh--CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 11233 467999999777654211111233334433210 112479999999999863
No 247
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.52 E-value=5.5e-07 Score=106.20 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=66.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE-EEEEEeEE------------------CCeEEEEEeCCCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSV------------------NGIKVTFIDTPGFLP 226 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~-~~~~~~~~------------------~G~~l~LIDTPGl~d 226 (791)
+..|+++|.+|+|||||+|+|.+...... .++++|+ +-...... ....++|+||||...
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 35799999999999999999998754321 1222222 11111100 012489999999732
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ..+. ..+. ..+|++++|++++.. ......+.+..+... ..|+++++||+|+..
T Consensus 82 f--------~~l~---~~~~--~~aD~~IlVvD~~~g-~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 F--------TNLR---KRGG--ALADLAILIVDINEG-FKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred H--------HHHH---HHHH--hhCCEEEEEEECCcC-CCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 2 1111 1122 357999999766532 112233444444322 478999999999863
No 248
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.52 E-value=1.7e-07 Score=93.21 Aligned_cols=58 Identities=33% Similarity=0.412 Sum_probs=46.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
..++++++|.+||||||++|.|.+.....++....+|+....+... ..+.||||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 3479999999999999999999998877777666667666655542 568999999983
No 249
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.52 E-value=6.9e-07 Score=93.92 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=68.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|||.+|||||||++.+.+..... .+.++..........+++ +.+.|+||+|-... ..+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~--- 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY--------DNVR--- 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh--------HHHH---
Confidence 45899999999999999999998754221 222332222222234444 57899999996321 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCC-cHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFS-DFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~-D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.+++....-.. ....+..+.+.. . ..++++|.||+|+.
T Consensus 79 ~~~~--~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~ 130 (232)
T cd04174 79 PLCY--SDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-P--STRILLIGCKTDLR 130 (232)
T ss_pred HHHc--CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccc
Confidence 1123 46799999977754321000 012233444432 1 36899999999974
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.51 E-value=2e-06 Score=98.61 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=70.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcc-------------------------ccc-----CCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKT-------------------------ETD-----AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a-------------------------~vs-----~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++|+++|..++|||||+..|+...-. ..+ ...+.|.+.......+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4589999999999999999988631100 000 1123455555566777899
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC------CCCcHHHHHHHHHHhcccccccE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM------GFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~------~~~D~~llk~L~~~fg~~i~k~v 288 (791)
.++||||||..+ ....+...+ ..+|++++|++.+.--. .....+.+..+. .+| -+++
T Consensus 86 ~i~lIDtPGh~~-----------f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g---i~~i 148 (446)
T PTZ00141 86 YFTIIDAPGHRD-----------FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG---VKQM 148 (446)
T ss_pred EEEEEECCChHH-----------HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---CCeE
Confidence 999999999632 122333323 46799999965542110 112233343332 223 1357
Q ss_pred EEEEeccCCC
Q 003857 289 ILVMTHSSST 298 (791)
Q Consensus 289 IVVLTK~D~l 298 (791)
||++||+|..
T Consensus 149 iv~vNKmD~~ 158 (446)
T PTZ00141 149 IVCINKMDDK 158 (446)
T ss_pred EEEEEccccc
Confidence 8999999954
No 251
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.51 E-value=6.3e-07 Score=90.50 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+++|..|||||||++.+....... ...++..........+++ ..+.|+||||-... ..+. .
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~--------~~l~---~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY--------DRLR---T 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhh--------hhhh---h
Confidence 3799999999999999999998653211 122222222222223444 57889999998322 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. ..+|++++|.+++.... .... .....+... . ...|+++|.||.|+.
T Consensus 70 ~~~--~~a~~~ilvydit~~~S-f~~~~~~w~~~i~~~-~--~~~piilvgNK~DL~ 120 (191)
T cd01875 70 LSY--PQTNVFIICFSIASPSS-YENVRHKWHPEVCHH-C--PNVPILLVGTKKDLR 120 (191)
T ss_pred hhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh-C--CCCCEEEEEeChhhh
Confidence 122 46799999977754321 1111 122223222 1 247999999999985
No 252
>PRK12289 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.1e-07 Score=105.56 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=45.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCC-------ceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~-------~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
.++|+|++|||||||||+|++.....++.+.. +|+....+...-++ .||||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 58999999999999999999988887766644 56666555442222 8999999987654
No 253
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.50 E-value=6e-07 Score=89.68 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=76.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
....+|+++|..|+||||+++.|.......+ ..|...........+..+.++|.+|-... ...++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~--------~~~w~--- 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESF--------RPLWK--- 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGG--------GGGGG---
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccc--------cccce---
Confidence 3458999999999999999999987543331 23444555566678999999999986321 11222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
.+. ..+|+|+||++..... .-.+..+.|.+.+... ...|++|++||.|..
T Consensus 77 ~y~--~~~~~iIfVvDssd~~---~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 77 SYF--QNADGIIFVVDSSDPE---RLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GGH--TTESEEEEEEETTGGG---GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred eec--cccceeEEEEecccce---eecccccchhhhcchhhcccceEEEEecccccc
Confidence 223 3569999995544322 1224445555555432 257999999999975
No 254
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.49 E-value=6.9e-07 Score=89.74 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=68.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+++|.+|||||||++.+..... .. ...++..........+++ +++.|+||+|-.... .+. ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~--------~~~---~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PT-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLR---PL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CC-CCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc--------ccc---hh
Confidence 6899999999999999999986542 21 222332222222334444 578999999974321 111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++.... ... ...+..+.... -..++++|.||+|+..
T Consensus 69 ~~--~~a~~~ilvyd~~~~~S-f~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~ 119 (176)
T cd04133 69 SY--RGADVFVLAFSLISRAS-YENVLKKWVPELRHYA---PNVPIVLVGTKLDLRD 119 (176)
T ss_pred hc--CCCcEEEEEEEcCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEeChhhcc
Confidence 23 36799999977764421 111 12333333321 2479999999999853
No 255
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=7.8e-07 Score=99.94 Aligned_cols=124 Identities=24% Similarity=0.340 Sum_probs=79.6
Q ss_pred CceEEEEEeecCCchHHHHhHhh---CCCcccc-----cCCCCcee--------EEE-----EE----------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIF---DQTKTET-----DAFQPATD--------CIR-----EV---------------- 207 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl---G~~~a~v-----s~~~~~Tt--------~~~-----~~---------------- 207 (791)
.+..|.+||-.||||||.+.+|. -++.+.| +.+.++.- +.. .+
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak 456 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAK 456 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHH
Confidence 67999999999999999999983 1222221 22222110 000 00
Q ss_pred ----EeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 003857 208 ----KGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 283 (791)
Q Consensus 208 ----~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~ 283 (791)
....+|.+|+||||+|.... +...+.++.+++...+||.|||| -.+.-. .+...-++.+.+.++..
T Consensus 457 ~AI~~a~~~gfDVvLiDTAGR~~~-------~~~lm~~l~k~~~~~~pd~i~~v--gealvg-~dsv~q~~~fn~al~~~ 526 (587)
T KOG0781|consen 457 EAIQEARNQGFDVVLIDTAGRMHN-------NAPLMTSLAKLIKVNKPDLILFV--GEALVG-NDSVDQLKKFNRALADH 526 (587)
T ss_pred HHHHHHHhcCCCEEEEeccccccC-------ChhHHHHHHHHHhcCCCceEEEe--hhhhhC-cHHHHHHHHHHHHHhcC
Confidence 02346789999999999643 67888999999988899999999 333221 12234455556665543
Q ss_pred cc--ccEEEEEeccCCC
Q 003857 284 IW--FNTILVMTHSSST 298 (791)
Q Consensus 284 i~--k~vIVVLTK~D~l 298 (791)
.. .--.|++||+|..
T Consensus 527 ~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 527 STPRLIDGILLTKFDTV 543 (587)
T ss_pred CCccccceEEEEeccch
Confidence 21 1234799999976
No 256
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=4.2e-08 Score=97.57 Aligned_cols=61 Identities=30% Similarity=0.362 Sum_probs=37.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCC-------CCceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~-------~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
-+++|+|++|||||||||+|++.....++.+ ..+|+....+.. .....|||||||.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCccccc
Confidence 4899999999999999999999865554322 223444444443 223599999999887554
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.49 E-value=5e-07 Score=99.21 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=57.7
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE------------------------CCeEEEEEeCCCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------------------NGIKVTFIDTPGF 224 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~------------------------~G~~l~LIDTPGl 224 (791)
|+|||.||||||||+|+|++.. +.++.++.+|.++......+ .+.++.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999876 45666766665544332221 2368999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccC
Q 003857 225 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL 262 (791)
Q Consensus 225 ~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~ 262 (791)
..... ....+...+...+ ..+|++++|+++..
T Consensus 80 v~ga~----~~~glg~~fL~~i--r~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAH----EGKGLGNKFLDDL--RDADALIHVVDASG 111 (318)
T ss_pred CCCcc----chhhHHHHHHHHH--HHCCEEEEEEeCCC
Confidence 65421 1223333333334 24699999977654
No 258
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.48 E-value=5.1e-07 Score=101.86 Aligned_cols=88 Identities=22% Similarity=0.202 Sum_probs=58.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE---------------------EC---CeEEEEEeCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---------------------VN---GIKVTFIDTP 222 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~---------------------~~---G~~l~LIDTP 222 (791)
++|.|||.||||||||+|+|++... .++.++.+|.++...... .+ ..++.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 6899999999999999999998764 446665666555443221 12 2568899999
Q ss_pred CCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 003857 223 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 261 (791)
Q Consensus 223 Gl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld 261 (791)
|+..... ....+...+...+ ..+|++++|++..
T Consensus 81 Gl~~ga~----~g~glg~~fL~~i--r~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH----EGRGLGNQFLDDL--RQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc----chhhHHHHHHHHH--HHCCEEEEEEeCC
Confidence 9976422 1223333333334 2469999996664
No 259
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.48 E-value=4.9e-07 Score=90.69 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=65.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.+|+|+|.+|+|||||+|.|....... ...+++.........+.+ ..+.++||||...... . ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~-~~~-- 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER--------L-RPL-- 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccc--------c-chh--
Confidence 589999999999999999998433221 112222222222333444 4578999999743210 0 011
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++++|..++.... .... ..+..+..... ..|+++|.||+|+.
T Consensus 69 ~~--~~a~~~llv~~i~~~~s-~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 69 SY--SKAHVILIGFAVDTPDS-LENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred hc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 12 45689998876654321 1111 23333433322 37999999999974
No 260
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.47 E-value=1.1e-06 Score=89.98 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=63.0
Q ss_pred CceEEEEEeecCCchHHHHhHh-hCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSI-FDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsL-lG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|+|++|||||||+|.+ .|..................+....+...+.++||+|-... ..+. .
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------~~~~---~ 76 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------GGLR---D 76 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--------hhhh---H
Confidence 4589999999999999999765 44322111111011111111111223468899999996321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. ...+++++|.++.....-......+..+..... ..++++|.||+|+.
T Consensus 77 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 77 GYY--IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK 126 (215)
T ss_pred HHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence 223 245889999665432110011122333333321 36788899999975
No 261
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.47 E-value=2.5e-07 Score=103.58 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=76.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhh------CCCcccc--cCCCCcee----------EEEEEE-----------------
Q 003857 164 DFSIRILVLGKTGVGKSATINSIF------DQTKTET--DAFQPATD----------CIREVK----------------- 208 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLl------G~~~a~v--s~~~~~Tt----------~~~~~~----------------- 208 (791)
..+..|++||--|+||||+..+|. |..+..+ +.+.|... .+..+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 456899999999999999999994 3333322 11222110 000000
Q ss_pred eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 003857 209 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 209 ~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
....+.+++||||+|... .++..+.+++..-...+||-+||| +|+.+. .......+.+.+.. .-+
T Consensus 178 ak~~~~DvvIvDTAGRl~-------ide~Lm~El~~Ik~~~~P~E~llV--vDam~G-QdA~~~A~aF~e~l-----~it 242 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH-------IDEELMDELKEIKEVINPDETLLV--VDAMIG-QDAVNTAKAFNEAL-----GIT 242 (451)
T ss_pred HHHcCCCEEEEeCCCccc-------ccHHHHHHHHHHHhhcCCCeEEEE--Eecccc-hHHHHHHHHHhhhc-----CCc
Confidence 122356899999999963 367777887775555689999999 666543 12234444444443 345
Q ss_pred EEEEeccCCCCC
Q 003857 289 ILVMTHSSSTLP 300 (791)
Q Consensus 289 IVVLTK~D~l~p 300 (791)
-||+||.|....
T Consensus 243 GvIlTKlDGdaR 254 (451)
T COG0541 243 GVILTKLDGDAR 254 (451)
T ss_pred eEEEEcccCCCc
Confidence 679999997643
No 262
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.45 E-value=3.2e-07 Score=102.24 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=44.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc-----ccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK-----TETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~-----a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
.+|+|||.||||||||||+|++... +.++..+++|.....+.. +..+.||||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 5899999999999999999998643 445666555666665543 334689999999865
No 263
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.45 E-value=1.5e-06 Score=101.53 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=68.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCccc--ccCCC-------------------CceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTE--TDAFQ-------------------PATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~--vs~~~-------------------~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
..+|+|+|.+|+|||||+++|+-....+ .+.+. +.|-........+++..+.|+||||.
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 3699999999999999999986322111 11111 11122333446678999999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 225 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 225 ~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. .... .+++ ..+|++++|++.... .......+++.... ...|+++++||+|+.
T Consensus 91 ~df-------~~~~----~~~l--~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 91 EDF-------SEDT----YRTL--TAVDNCLMVIDAAKG-VETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhH-------HHHH----HHHH--HhCCEEEEEEECCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 532 1222 2233 246999999554321 11112233332222 247899999999975
No 264
>PRK10218 GTP-binding protein; Provisional
Probab=98.45 E-value=1.3e-06 Score=103.27 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=71.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccC---------------CCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~---------------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~ 231 (791)
.+|+|+|..++|||||+++|+......... ..+.|.........+++..+.||||||..+..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 589999999999999999998632211100 12234444555667789999999999986541
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+..++ ..+|++++|++.... ........++.+.. ...+.++++||+|..
T Consensus 83 --------~~v~~~l--~~aDg~ILVVDa~~G-~~~qt~~~l~~a~~-----~gip~IVviNKiD~~ 133 (607)
T PRK10218 83 --------GEVERVM--SMVDSVLLVVDAFDG-PMPQTRFVTKKAFA-----YGLKPIVVINKVDRP 133 (607)
T ss_pred --------HHHHHHH--HhCCEEEEEEecccC-ccHHHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 1122233 346999999655321 11122334443332 247889999999975
No 265
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.44 E-value=9.6e-07 Score=104.48 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=66.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc-----C---------CCCceeEEEEEEeEE---CC--eEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD-----A---------FQPATDCIREVKGSV---NG--IKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs-----~---------~~~~Tt~~~~~~~~~---~G--~~l~LIDTPGl~d~ 227 (791)
-+|+|+|..|+|||||++.|+.....+.. . ..+.|-....+...+ ++ ..+.||||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 48999999999999999999865322210 0 112333333333333 22 68999999999643
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. ..+.+++ ..+|++++|++++... .......+....+ ...++++|+||+|+.
T Consensus 84 ~-----------~~v~~~l--~~aD~aILVvDat~g~-~~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 S-----------YEVSRSL--AACEGALLLVDAAQGI-EAQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred H-----------HHHHHHH--HhCCEEEEEecCCCCC-CHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 1 1223334 2459999995554321 1112222222221 136899999999975
No 266
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=94.13 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=92.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE-ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
...|+|||.||+|||||||+|.+.....-+.. ..|-++...... ..|..+.+.||-||.. ........++..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drL-FATLDpT~h~a~Lpsg~~vlltDTvGFis------dLP~~LvaAF~A 250 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-FATLDPTLHSAHLPSGNFVLLTDTVGFIS------DLPIQLVAAFQA 250 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchh-heeccchhhhccCCCCcEEEEeechhhhh------hCcHHHHHHHHH
Confidence 46999999999999999999996554444433 334444333332 3688999999999964 234555666665
Q ss_pred HHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc---cccccEEEEEeccCCCCC---CCCCCCccchHHHHhhC
Q 003857 245 FIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT---AIWFNTILVMTHSSSTLP---EGSSGYPFSYESYVTQC 317 (791)
Q Consensus 245 ~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~---~i~k~vIVVLTK~D~l~p---d~~~~~~~~~e~~i~q~ 317 (791)
.+... .+|++|.|.+++..........++..+..+ |- ....++|=|-||.|..+. .+.++ ...+......+
T Consensus 251 TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E~n~-~v~isaltgdg 328 (410)
T KOG0410|consen 251 TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEEKNL-DVGISALTGDG 328 (410)
T ss_pred HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccccCC-ccccccccCcc
Confidence 55433 689999997777654322222344444443 21 112456678899997532 22221 12222233445
Q ss_pred hHHHHHHHHHH
Q 003857 318 TDLVQQRIHQA 328 (791)
Q Consensus 318 ~~~lq~~I~q~ 328 (791)
.+.+...+...
T Consensus 329 l~el~~a~~~k 339 (410)
T KOG0410|consen 329 LEELLKAEETK 339 (410)
T ss_pred HHHHHHHHHHH
Confidence 55566555544
No 267
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.42 E-value=4.6e-07 Score=97.92 Aligned_cols=59 Identities=31% Similarity=0.432 Sum_probs=44.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccC-------CCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDA-------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~-------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
..+++|.+|||||||||+|.++....++. ...+||...-+....+| .|||||||..-..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 78899999999999999999865555432 23356666666654455 8999999988755
No 268
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.41 E-value=3.2e-06 Score=92.92 Aligned_cols=120 Identities=28% Similarity=0.323 Sum_probs=66.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC------Cccccc--CCCCc---------e-eEEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD--AFQPA---------T-DCIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~------~~a~vs--~~~~~---------T-t~~~~~~-----------------~ 209 (791)
.+-.|+|+|++|+||||++.+|.+. .+..++ .+... . ..+..+. .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999642 222221 11110 0 0011111 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 283 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~------~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~ 283 (791)
...+++++||||||..... ...+++++++.. ...++.+++|+ ++.+. ..+..-+..+.+.+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~-------~~l~~eL~~~~~v~~~~~~~~p~~~~LVl--~a~~g-~~~~~~a~~f~~~~--- 259 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK-------TNLMEELKKIKRVIKKADPDAPHEVLLVL--DATTG-QNALSQAKAFHEAV--- 259 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC-------HHHHHHHHHHHHHHhhhcCCCCceEEEEE--ECCCC-hHHHHHHHHHHhhC---
Confidence 1246789999999997542 223333333221 24688889994 44432 12222222222221
Q ss_pred ccccEEEEEeccCCCC
Q 003857 284 IWFNTILVMTHSSSTL 299 (791)
Q Consensus 284 i~k~vIVVLTK~D~l~ 299 (791)
....+|+||.|...
T Consensus 260 --~~~giIlTKlD~t~ 273 (318)
T PRK10416 260 --GLTGIILTKLDGTA 273 (318)
T ss_pred --CCCEEEEECCCCCC
Confidence 35578999999663
No 269
>PRK13351 elongation factor G; Reviewed
Probab=98.41 E-value=1.5e-06 Score=104.47 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=71.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc--cCC---------------CCceeEEEEEEeEECCeEEEEEeCCCCCCcc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~---------------~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~ 228 (791)
-.+|+|+|..|+|||||++.|+.....+. +.+ ...|.........+.+..+.||||||..+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df- 86 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF- 86 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH-
Confidence 36999999999999999999975321110 000 122333444556778999999999998542
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. .....++ ..+|++++|++..... ......+++.+... ..|.++|+||+|+.
T Consensus 87 ------~----~~~~~~l--~~aD~~ilVvd~~~~~-~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 ------T----GEVERSL--RVLDGAVVVFDAVTGV-QPQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred ------H----HHHHHHH--HhCCEEEEEEeCCCCC-CHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 1 1222233 2459999996554321 11223344433332 47899999999976
No 270
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.40 E-value=1.8e-06 Score=101.99 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=65.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE------CC------------eEEEEEeCCCCCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------NG------------IKVTFIDTPGFLP 226 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~------~G------------~~l~LIDTPGl~d 226 (791)
.+..|+|+|.+|+|||||+|+|.+........ ...|..+-...... .+ ..++|+||||..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 34689999999999999999998865432211 11122211110000 00 1278999999843
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.. ... .+.. ...|++++|++++.. ........+..+.. ...|+++++||+|+.
T Consensus 84 f~--------~~~---~~~~--~~aD~~IlVvDa~~g-~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FT--------NLR---KRGG--ALADIAILVVDINEG-FQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HH--------HHH---HHhH--hhCCEEEEEEECCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 21 111 1122 346999999665432 11233344444333 247899999999975
No 271
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.40 E-value=3.7e-07 Score=92.55 Aligned_cols=115 Identities=15% Similarity=0.251 Sum_probs=64.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEE---CCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~---~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
-.|+|+|++|+|||+|+..|.......+ .+. .......+ .+..+.|||+||...- .......+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~------e~n~~~~~~~~~~~~~~lvD~PGH~rl-------r~~~~~~~ 70 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM------ENNIAYNVNNSKGKKLRLVDIPGHPRL-------RSKLLDEL 70 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S------SEEEECCGSSTCGTCECEEEETT-HCC-------CHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc------cCCceEEeecCCCCEEEEEECCCcHHH-------HHHHHHhh
Confidence 4899999999999999999986532221 111 11111122 4678999999999532 22333332
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc----cccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT----AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~----~i~k~vIVVLTK~D~l~ 299 (791)
. ++ ..+..|+||+ |+.+....-.++.+.|..++.. ....|++|+.||.|+..
T Consensus 71 ~-~~--~~~k~IIfvv--DSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 71 K-YL--SNAKGIIFVV--DSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp H-HH--GGEEEEEEEE--ETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred h-ch--hhCCEEEEEE--eCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 2 22 3457899994 4432111223455555554432 23578999999999874
No 272
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.39 E-value=1.8e-06 Score=84.87 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=65.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
++|+|+|.+|||||||++.++...... ...+ |.........++| ..+.++||+|.... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~----------------~ 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA----------------Q 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCC-CccceEEEEEECCEEEEEEEEECCCCCch----------------h
Confidence 479999999999999999887543211 1112 2221123345566 56889999998421 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+. ...|++++|.+++....-..-...+..+..... ....|+++|.||.|+.
T Consensus 62 ~~--~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 62 FA--SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred HH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 12 246999999766544211111233444443321 1236899999999874
No 273
>PTZ00416 elongation factor 2; Provisional
Probab=98.37 E-value=1.9e-06 Score=105.78 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=70.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee---------------EEEEEEeEEC----------CeEEEEEeC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD---------------CIREVKGSVN----------GIKVTFIDT 221 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt---------------~~~~~~~~~~----------G~~l~LIDT 221 (791)
.+|+|+|..++|||||+++|+.....+.....+.|+ ....+...+. +..+.||||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 599999999999999999998754433221111111 1111122332 567999999
Q ss_pred CCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 222 PGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 222 PGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
||..+. ..++...+ ..+|++++|++...- .......+++.+.+. ..|.++++||+|..
T Consensus 100 PG~~~f-----------~~~~~~al--~~~D~ailVvda~~g-~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHVDF-----------SSEVTAAL--RVTDGALVVVDCVEG-VCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred CCHHhH-----------HHHHHHHH--hcCCeEEEEEECCCC-cCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 999542 12233333 356999999654332 222344555555443 37899999999986
No 274
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=91.58 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=77.0
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.+...+++++|.+|||||||||.++-.....- +...++ ..+.+....-|..++++|.||++-..-.. ...+..-.-
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g--~Tq~in~f~v~~~~~~vDlPG~~~a~y~~-~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNG--KTQAINHFHVGKSWYEVDLPGYGRAGYGF-ELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCc--cceeeeeeeccceEEEEecCCcccccCCc-cCcchHhHh
Confidence 45568999999999999999999987544332 221222 22233333458899999999965543221 122333333
Q ss_pred HHHHHhcC--CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRS--PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~--~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+.++... -..++|+|+ .+. .....|...+.++.+. ..|..+||||||...
T Consensus 210 t~~Y~leR~nLv~~FLLvd-~sv-~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVD-ASV-PIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHHhhhhhheeeeeee-ccC-CCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 34443222 123444442 222 2334677777777665 589999999999863
No 275
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.37 E-value=2.2e-06 Score=96.98 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=65.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc--cCCCCceeEEEE----------------EEe----E------ECCeEE
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIRE----------------VKG----S------VNGIKV 216 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~~Tt~~~~----------------~~~----~------~~G~~l 216 (791)
..++|+++|..++|||||+++|.+...... ..-...|..... +.. . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 358999999999999999999976421110 000011111100 000 0 124689
Q ss_pred EEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccC
Q 003857 217 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 296 (791)
Q Consensus 217 ~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D 296 (791)
.|+||||..+. ...+...+ ..+|++++|++++.........+.+..+ ..++ .+++++|+||+|
T Consensus 83 ~liDtPGh~~f-----------~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~D 145 (406)
T TIGR03680 83 SFVDAPGHETL-----------MATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKID 145 (406)
T ss_pred EEEECCCHHHH-----------HHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEccc
Confidence 99999997321 12222222 3569999996665321012233444433 3333 257899999999
Q ss_pred CCC
Q 003857 297 STL 299 (791)
Q Consensus 297 ~l~ 299 (791)
+..
T Consensus 146 l~~ 148 (406)
T TIGR03680 146 LVS 148 (406)
T ss_pred cCC
Confidence 873
No 276
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.36 E-value=2.9e-06 Score=99.11 Aligned_cols=114 Identities=9% Similarity=0.040 Sum_probs=68.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcc--cccCCC-------------------CceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQ-------------------PATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a--~vs~~~-------------------~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
..+|+|+|.+|+|||||+++|+..... ..+.+. +.|-........+++..+.||||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 369999999999999999999632111 111111 11112223446678999999999998
Q ss_pred CCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 225 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 225 ~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. ...... ++ ..+|++++|++.... .......+++.... ...|+++++||+|..
T Consensus 90 ~df-------~~~~~~----~l--~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 90 EDF-------SEDTYR----TL--TAVDSALMVIDAAKG-VEPQTRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred hhh-------HHHHHH----HH--HHCCEEEEEEecCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 543 122222 23 246999999554321 11111233322222 247999999999975
No 277
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=2.3e-06 Score=96.71 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCC-------cccc--cCCCCcee----------EEEEEE----------eEECCeEE
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQT-------KTET--DAFQPATD----------CIREVK----------GSVNGIKV 216 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~-------~a~v--s~~~~~Tt----------~~~~~~----------~~~~G~~l 216 (791)
+..|+|+|++||||||++..|.... +..+ +.+..... .+.... ....+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4579999999999999999996422 2111 11111100 000000 01146789
Q ss_pred EEEeCCCCCCccccchhhhHHHHHHHHHHHhcC---CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 217 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS---PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 217 ~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~---~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
+||||||+... +...++++.+++... .++-++|| +++.... ..+..+.+.|.. -...-+|||
T Consensus 303 VLIDTaGr~~r-------d~~~l~eL~~~~~~~~~~~~~e~~LV--LsAt~~~----~~~~~~~~~f~~--~~~~glIlT 367 (432)
T PRK12724 303 ILIDTAGYSHR-------NLEQLERMQSFYSCFGEKDSVENLLV--LSSTSSY----HHTLTVLKAYES--LNYRRILLT 367 (432)
T ss_pred EEEeCCCCCcc-------CHHHHHHHHHHHHhhcCCCCCeEEEE--EeCCCCH----HHHHHHHHHhcC--CCCCEEEEE
Confidence 99999999643 234445555544322 24567888 4444321 233444444422 135567999
Q ss_pred ccCCCC
Q 003857 294 HSSSTL 299 (791)
Q Consensus 294 K~D~l~ 299 (791)
|.|...
T Consensus 368 KLDEt~ 373 (432)
T PRK12724 368 KLDEAD 373 (432)
T ss_pred cccCCC
Confidence 999874
No 278
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.34 E-value=2e-06 Score=88.33 Aligned_cols=109 Identities=10% Similarity=0.036 Sum_probs=62.7
Q ss_pred EeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc
Q 003857 172 LGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 248 (791)
Q Consensus 172 VGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~ 248 (791)
||..|||||||+++++..... ....++. .+.......++ ..++.|+||||-... ..+. ..++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~---~~~~-- 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF--------GGLR---DGYY-- 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh--------hhhh---HHHh--
Confidence 699999999999999854321 1121221 12222333333 468999999998422 1111 1233
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 249 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 249 ~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++|++++|.++........-...+..+.+.. -..|+++|.||+|+.
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 35799999966654321111112333344432 247999999999975
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.31 E-value=2.1e-06 Score=97.98 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhh------CCCcccc--cCCCCcee----------EEEEEE---------------eE
Q 003857 164 DFSIRILVLGKTGVGKSATINSIF------DQTKTET--DAFQPATD----------CIREVK---------------GS 210 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLl------G~~~a~v--s~~~~~Tt----------~~~~~~---------------~~ 210 (791)
..+..|+++|.+|+||||++..|. |..+..+ +.+.+... .+..+. ..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346799999999999999998884 2223222 11211110 000000 01
Q ss_pred ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 003857 211 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 290 (791)
Q Consensus 211 ~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIV 290 (791)
..+.+++||||||.... +...+++++.......+|.+++|++ +.+. .+.++... .|...+ ....+
T Consensus 173 ~~~~DvVIIDTAGr~~~-------d~~lm~El~~l~~~~~pdevlLVvd--a~~g----q~av~~a~-~F~~~l-~i~gv 237 (437)
T PRK00771 173 FKKADVIIVDTAGRHAL-------EEDLIEEMKEIKEAVKPDEVLLVID--ATIG----QQAKNQAK-AFHEAV-GIGGI 237 (437)
T ss_pred hhcCCEEEEECCCcccc-------hHHHHHHHHHHHHHhcccceeEEEe--cccc----HHHHHHHH-HHHhcC-CCCEE
Confidence 12358999999999643 4566777776554457899999944 4332 13333333 244322 24567
Q ss_pred EEeccCCCC
Q 003857 291 VMTHSSSTL 299 (791)
Q Consensus 291 VLTK~D~l~ 299 (791)
|+||.|...
T Consensus 238 IlTKlD~~a 246 (437)
T PRK00771 238 IITKLDGTA 246 (437)
T ss_pred EEecccCCC
Confidence 899999764
No 280
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=1.6e-06 Score=94.19 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=41.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCC-------ceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~-------~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
..++|+|++|||||||||+|+|.....++.+.. +|+....+.... ...|+||||+..-
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCcc
Confidence 479999999999999999999987766554422 444444433321 2389999999864
No 281
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.28 E-value=5e-06 Score=94.41 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=65.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccc--cCCCCceeEEEE----------------EEeE--E---C-----CeE
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIRE----------------VKGS--V---N-----GIK 215 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~~Tt~~~~----------------~~~~--~---~-----G~~ 215 (791)
...++|+++|..++|||||+.+|.+...... ....+.|-.... +... . + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4458999999999999999999976311100 001122222111 0000 0 0 267
Q ss_pred EEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEecc
Q 003857 216 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHS 295 (791)
Q Consensus 216 l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~ 295 (791)
+.|+||||..+ ....+...+ ..+|++++|++++...........+..+.. .+ .+++++|+||+
T Consensus 87 i~liDtPG~~~-----------f~~~~~~~~--~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~ 149 (411)
T PRK04000 87 VSFVDAPGHET-----------LMATMLSGA--ALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKI 149 (411)
T ss_pred EEEEECCCHHH-----------HHHHHHHHH--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEee
Confidence 99999999621 112222212 356999999665532101223344443332 22 24689999999
Q ss_pred CCCC
Q 003857 296 SSTL 299 (791)
Q Consensus 296 D~l~ 299 (791)
|+..
T Consensus 150 Dl~~ 153 (411)
T PRK04000 150 DLVS 153 (411)
T ss_pred cccc
Confidence 9873
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.28 E-value=4.5e-06 Score=101.01 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=67.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc---------ccCC------CCceeEEE----EEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE---------TDAF------QPATDCIR----EVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~---------vs~~------~~~Tt~~~----~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
.+|+|+|..|+|||||++.|+.....+ ..++ ...|.... .....+.+..+.||||||..+.
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 699999999999999999997421110 0011 11122211 1224557889999999999653
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. .. +...+ ..+|++++|++.... .......+++.+.+. ..+.++++||+|...
T Consensus 100 ~-------~~----~~~al--~~aD~~llVvda~~g-~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 100 G-------GD----VTRAM--RAVDGAIVVVCAVEG-VMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred H-------HH----HHHHH--HhcCEEEEEEecCCC-CCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 1 11 22223 346999999654321 112333444443322 357789999999863
No 283
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.27 E-value=1.5e-06 Score=84.63 Aligned_cols=56 Identities=30% Similarity=0.342 Sum_probs=43.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
..+++++|.+|+||||++|.|.+.....++...+.|+....+.. +..+.|+||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 47899999999999999999998877666665555554443322 347899999996
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.27 E-value=5.8e-06 Score=101.61 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=69.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee---------------EEEEEEeEE----------------CCeE
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD---------------CIREVKGSV----------------NGIK 215 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt---------------~~~~~~~~~----------------~G~~ 215 (791)
.+|+|+|..++|||||+++|+.....+.....+.|+ ....+...+ .+..
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 699999999999999999998655433222111111 111122222 2678
Q ss_pred EEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEecc
Q 003857 216 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHS 295 (791)
Q Consensus 216 l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~ 295 (791)
+.||||||..+. ..++...+ ..+|.+++|++...- .......+++.+... ..+.++++||+
T Consensus 100 inliDtPGh~dF-----------~~e~~~al--~~~D~ailVvda~~G-v~~~t~~~~~~~~~~-----~~p~i~~iNK~ 160 (843)
T PLN00116 100 INLIDSPGHVDF-----------SSEVTAAL--RITDGALVVVDCIEG-VCVQTETVLRQALGE-----RIRPVLTVNKM 160 (843)
T ss_pred EEEECCCCHHHH-----------HHHHHHHH--hhcCEEEEEEECCCC-CcccHHHHHHHHHHC-----CCCEEEEEECC
Confidence 899999999543 12222223 345899888554321 112333455544433 47899999999
Q ss_pred CCCC
Q 003857 296 SSTL 299 (791)
Q Consensus 296 D~l~ 299 (791)
|...
T Consensus 161 D~~~ 164 (843)
T PLN00116 161 DRCF 164 (843)
T ss_pred cccc
Confidence 9874
No 285
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=8.4e-07 Score=99.17 Aligned_cols=58 Identities=31% Similarity=0.336 Sum_probs=43.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC-----cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT-----KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~-----~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
.+++|||.||||||||||+|++.. ...++..+++|+....+... ....|+||||+...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~~ 223 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIHR 223 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC---CCcEEEECCCcccc
Confidence 589999999999999999998542 33456776677776665532 22489999999643
No 286
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.27 E-value=4.9e-06 Score=98.62 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=65.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc---------cC-----CCCceeEEEEEEeEEC-----CeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET---------DA-----FQPATDCIREVKGSVN-----GIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v---------s~-----~~~~Tt~~~~~~~~~~-----G~~l~LIDTPGl~d~ 227 (791)
.+|+|+|..++|||||++.|+....... +. ..+.|-........+. +..+.||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 5899999999999999999975322111 00 0122333222333332 578999999999653
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. ..+.+++ ..+|++++|++....- .......+..... ...++++|+||+|+.
T Consensus 88 ~-----------~~v~~sl--~~aD~aILVVDas~gv-~~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S-----------YEVSRSL--AACEGALLVVDASQGV-EAQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred H-----------HHHHHHH--HHCCEEEEEEECCCCC-CHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 1 1222333 2458999996554321 1122222222221 236899999999975
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=98.27 E-value=4.1e-06 Score=95.49 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=69.9
Q ss_pred CceEEEEEeecCCchHHHHhHhh-------CCCcccc--cCCCCcee----------EEEEEE-----------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIF-------DQTKTET--DAFQPATD----------CIREVK----------------- 208 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl-------G~~~a~v--s~~~~~Tt----------~~~~~~----------------- 208 (791)
.+..|+++|++|+||||++..|. |..+..+ +.+.+... .+..+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35789999999999999988884 3334433 22322210 000011
Q ss_pred eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 003857 209 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 209 ~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
....+++++||||||.... +...+.++..+.....|+.++|| +|+.+. ......++.+.+. + ...
T Consensus 179 a~~~~~DvVIIDTaGrl~~-------d~~lm~eL~~i~~~v~p~evllV--lda~~g-q~av~~a~~F~~~----~-~i~ 243 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHI-------DEELMDELKAIKAAVNPDEILLV--VDAMTG-QDAVNTAKAFNEA----L-GLT 243 (433)
T ss_pred HHhcCCCEEEEeCCCCccc-------CHHHHHHHHHHHHhhCCCeEEEE--EecccH-HHHHHHHHHHHhh----C-CCC
Confidence 0123578999999999643 34555666555444578888999 444432 1122333333332 2 245
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
-+|+||.|...
T Consensus 244 giIlTKlD~~~ 254 (433)
T PRK10867 244 GVILTKLDGDA 254 (433)
T ss_pred EEEEeCccCcc
Confidence 67899999653
No 288
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.27 E-value=2e-06 Score=93.10 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=41.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCC-------CCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~-------~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
..++++|++|||||||||.|+|.....++.+ ..+|+....+.....+ .|+||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 5899999999999999999999876655322 1245545444432223 79999999664
No 289
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.26 E-value=7.4e-07 Score=101.00 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=53.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
.++|.+||.||||||||||+|.|.++..|+..++.|+.++.+... -.+.|.|+||+--.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCC
Confidence 489999999999999999999999999999888889988877753 4679999999976643
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.22 E-value=1e-05 Score=98.21 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=67.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCC---------------ceeEEEEEEeEE----CCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP---------------ATDCIREVKGSV----NGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~---------------~Tt~~~~~~~~~----~G~~l~LIDTPGl~d~ 227 (791)
.+|+|+|..++|||||+.+|+.....+.....+ .|-........+ .+..+.||||||..+.
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 589999999999999999997543332211111 111111122222 4678999999999653
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ..+...+ ..+|++++|++.... .......+++...+. ..+.|+++||+|...
T Consensus 101 -------~----~~~~~~l--~~~D~avlVvda~~g-~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 101 -------G----GDVTRAM--RAVDGAIVVVDAVEG-VMPQTETVLRQALRE-----RVKPVLFINKVDRLI 153 (731)
T ss_pred -------H----HHHHHHH--HhcCEEEEEEECCCC-CCccHHHHHHHHHHc-----CCCeEEEEECchhhc
Confidence 1 2233333 245999998554322 122344555543332 256789999999763
No 291
>PRK12740 elongation factor G; Reviewed
Probab=98.21 E-value=5.8e-06 Score=99.20 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=66.5
Q ss_pred EeecCCchHHHHhHhhCCCcccc--cCC---------------CCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhh
Q 003857 172 LGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKR 234 (791)
Q Consensus 172 VGktGvGKSTLINsLlG~~~a~v--s~~---------------~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~ 234 (791)
+|..|+|||||+|.|+.....+. +.+ ...|.........+.+..++||||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 69999999999999965433321 111 123334444567788999999999998532
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 235 NRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 235 n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
... +..++ ..+|++++|++.... .......++..+... ..+.++|+||+|..
T Consensus 74 ~~~----~~~~l--~~aD~vllvvd~~~~-~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 74 TGE----VERAL--RVLDGAVVVVCAVGG-VEPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred HHH----HHHHH--HHhCeEEEEEeCCCC-cCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 111 22223 246999999655432 111222333333322 47899999999976
No 292
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.21 E-value=1.3e-05 Score=79.48 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=78.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+++|..|+||||+++++.|+.... + ..|.........+++..+.++|.-|-.. -... -+.|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~---i-~pt~gf~Iktl~~~~~~L~iwDvGGq~~--------lr~~---W~nY 80 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDT---I-SPTLGFQIKTLEYKGYTLNIWDVGGQKT--------LRSY---WKNY 80 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccc---c-CCccceeeEEEEecceEEEEEEcCCcch--------hHHH---HHHh
Confidence 3899999999999999999999987332 2 4566677777888999999999888732 1222 2334
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
. ...|.++||++.+... .-.+....+++.+.. -++.+++++.||.|..
T Consensus 81 f--estdglIwvvDssD~~---r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 81 F--ESTDGLIWVVDSSDRM---RMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred h--hccCeEEEEEECchHH---HHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 4 2459999995442221 122445555555443 2357999999999976
No 293
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.21 E-value=9.2e-06 Score=85.55 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=66.7
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE-ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
+|+++|+.|+||||..+.||+.-...-...-..|.++...... .+...+.|+|.||-.+.... ......+.+ .
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~---~~~~~~~~i---f 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN---YFNSQREEI---F 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT---THTCCHHHH---H
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc---cccccHHHH---H
Confidence 6999999999999999999987544333333566666665554 45669999999999765211 000111222 2
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHH-HHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFP-LLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~-llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+++++||+++.... ...+.. +...+..........++.|.+.|+|++.
T Consensus 75 --~~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 75 --SNVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp --CTESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred --hccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 3568999995444221 112222 2222222222233467889999999874
No 294
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.19 E-value=6.5e-06 Score=84.03 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=63.5
Q ss_pred eEEEEEeecCCchHHHHhH-hhCCCc----ccccCCCCcee--E-EEEE-------EeEECC--eEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINS-IFDQTK----TETDAFQPATD--C-IREV-------KGSVNG--IKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINs-LlG~~~----a~vs~~~~~Tt--~-~~~~-------~~~~~G--~~l~LIDTPGl~d~~~ 229 (791)
++|+++|.+|||||||++. +.+... +. ..+.|+.. + .... ...++| ..+.|+||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~-~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLL-ATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCc-cccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 7999999999999999964 433211 11 12223321 1 1100 112334 57899999998421
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
... .++ ..+|++++|.+++.... .... ..+..+.... . ..|+++|.||+|+.
T Consensus 80 ---------~~~--~~~--~~ad~iilv~d~t~~~S-f~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~ 133 (195)
T cd01873 80 ---------DRR--FAY--GRSDVVLLCFSIASPNS-LRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLR 133 (195)
T ss_pred ---------hhc--ccC--CCCCEEEEEEECCChhH-HHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcc
Confidence 011 122 46899999977654321 1111 1233343332 1 36899999999985
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.19 E-value=5.7e-06 Score=89.38 Aligned_cols=102 Identities=22% Similarity=0.178 Sum_probs=51.7
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHhhh---hHHH-HHHHHHHhHHHH----hhhhhhhHHHHHHhhhc-
Q 003857 88 MMDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRL---HLAT-LIRAGESDMKMV----NLRSDRTRAIAREQEAT- 158 (791)
Q Consensus 88 ~k~~~~kIe~lR~~Ll~l~~rLg~~~ed~lva~vL~rl---~lae-~i~~~~~~l~~~----~~~~~~~~~la~~~e~~- 158 (791)
.+.+.++++.+|..|..+...+......+....+..++ ++.. ..+.+.+.+... .....-...++......
T Consensus 106 ~~~~~~e~~~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 185 (282)
T TIGR03499 106 PEELRKELEALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKP 185 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCC
Confidence 34678899999999988887654333222333333333 2211 111111111110 00001112222222211
Q ss_pred -CCCCCCCceEEEEEeecCCchHHHHhHhhCC
Q 003857 159 -GIPDLDFSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 159 -g~~~~~~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..+....+-.|+|+|++|||||||+..|...
T Consensus 186 ~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 186 EEDEILEQGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 1111234568999999999999999999753
No 296
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=1.5e-05 Score=81.18 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=74.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
+.-++|+|+|.+|||||=|+-.+.+..-.... ..|- +......++.|. ++.|+||+|-. +..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~---~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE-----------RFr 72 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESY---ISTIGVDFKIRTVELDGKTIKLQIWDTAGQE-----------RFR 72 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhh---cceeeeEEEEEEeeecceEEEEEeeeccccH-----------HHh
Confidence 44589999999999999999888764422221 1121 334444455554 78999999972 222
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+..+. .++|.|++|.++.....-..-...+..+.+.-.. ..+.++|-||+|+..
T Consensus 73 tit~syY--R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 73 TITSSYY--RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTE 128 (205)
T ss_pred hhhHhhc--cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHh
Confidence 2233333 3689999997776543212222444455554333 368999999999863
No 297
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.16 E-value=9.5e-06 Score=92.47 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=68.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhC-------CCcccc--cCCCCcee------------EEEEEE---------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD-------QTKTET--DAFQPATD------------CIREVK--------------- 208 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG-------~~~a~v--s~~~~~Tt------------~~~~~~--------------- 208 (791)
.+..|+++|++|+||||++..|.. ..+..+ +.+.+... .+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 357899999999999999877642 222222 22222110 000000
Q ss_pred eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 003857 209 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 209 ~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
....+++++||||||.... +...+.++.++.....++.++|| +|+.+. ......++.+.+. + ...
T Consensus 178 ~~~~~~DvVIIDTaGr~~~-------d~~l~~eL~~i~~~~~p~e~lLV--vda~tg-q~~~~~a~~f~~~----v-~i~ 242 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQI-------DEELMEELAAIKEILNPDEILLV--VDAMTG-QDAVNTAKTFNER----L-GLT 242 (428)
T ss_pred HHhcCCCEEEEeCCCcccc-------CHHHHHHHHHHHHhhCCceEEEE--Eeccch-HHHHHHHHHHHhh----C-CCC
Confidence 0124568999999999643 34555666665544578899999 444432 1222333333332 2 345
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
-+|+||.|...
T Consensus 243 giIlTKlD~~~ 253 (428)
T TIGR00959 243 GVVLTKLDGDA 253 (428)
T ss_pred EEEEeCccCcc
Confidence 67899999653
No 298
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.16 E-value=1.4e-06 Score=93.52 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=69.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC------ccccc--CCCC------ce----eEEEEEE--------------eEECCe
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT------KTETD--AFQP------AT----DCIREVK--------------GSVNGI 214 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~------~a~vs--~~~~------~T----t~~~~~~--------------~~~~G~ 214 (791)
-+|+|+|++|+||||++..|.+.- +..++ .... .+ ..+..+. ....+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 599999999999999999886431 11111 1100 00 0000010 011357
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEec
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 294 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK 294 (791)
+++||||||.... +...++++.+++....++.+++| +++.... .-+..+.+.|.. + ...-+||||
T Consensus 156 D~ViIDt~Gr~~~-------~~~~l~el~~~~~~~~~~~~~LV--l~a~~~~----~d~~~~~~~f~~-~-~~~~~I~TK 220 (270)
T PRK06731 156 DYILIDTAGKNYR-------ASETVEEMIETMGQVEPDYICLT--LSASMKS----KDMIEIITNFKD-I-HIDGIVFTK 220 (270)
T ss_pred CEEEEECCCCCcC-------CHHHHHHHHHHHhhhCCCeEEEE--EcCccCH----HHHHHHHHHhCC-C-CCCEEEEEe
Confidence 9999999999643 34556667666665678889999 5544321 122233444543 2 455679999
Q ss_pred cCCCC
Q 003857 295 SSSTL 299 (791)
Q Consensus 295 ~D~l~ 299 (791)
.|...
T Consensus 221 lDet~ 225 (270)
T PRK06731 221 FDETA 225 (270)
T ss_pred ecCCC
Confidence 99874
No 299
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=2.7e-05 Score=80.02 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=75.9
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKI 238 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i 238 (791)
-+..++|+++|.+|||||.++-.+.... +..+. ..|- +......+++|+ .+.++||+|-.. -.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~-f~~~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer--------f~-- 75 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDS-FNTSF--ISTIGIDFKIKTIELDGKKIKLQIWDTAGQER--------FR-- 75 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhcc-CcCCc--cceEEEEEEEEEEEeCCeEEEEEEEEcccchh--------HH--
Confidence 3456899999999999999997776533 32221 1222 223333455554 678999999832 12
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 239 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 239 ~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+.++. .+++.+++|.++.....-......++.|.+.-.. ..+.++|-||+|+..
T Consensus 76 -ti~~sYy--rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 76 -TITTAYY--RGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEE 131 (207)
T ss_pred -HHHHHHH--hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccc
Confidence 2334444 3678999997765443223344566677666333 578999999999874
No 300
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.10 E-value=4.8e-06 Score=79.20 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=65.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|++||+.|+||+|+.|+|.|..... -.| .. +. ++.. -.|||||-+ .++.....++....
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKT-QA--ve--~~d~--~~IDTPGEy-------~~~~~~Y~aL~tt~- 62 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKT-QA--VE--FNDK--GDIDTPGEY-------FEHPRWYHALITTL- 62 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----ccc-ce--ee--ccCc--cccCCchhh-------hhhhHHHHHHHHHh-
Confidence 79999999999999999999976331 111 11 11 1111 479999986 33455656665433
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|+++||..++...... -..|-.-..+++|-|+||+|+..
T Consensus 63 -~dadvi~~v~~and~~s~f---------~p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 63 -QDADVIIYVHAANDPESRF---------PPGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred -hccceeeeeecccCccccC---------CcccccccccceEEEEecccccc
Confidence 4679999996665432211 11121222367999999999984
No 301
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.10 E-value=6.8e-05 Score=86.17 Aligned_cols=118 Identities=19% Similarity=0.099 Sum_probs=69.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcc------------------------cc-c-----CCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKT------------------------ET-D-----AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a------------------------~v-s-----~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++|+++|..++|||||+-.|+-.... -+ + .-.+.|-++........++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 4589999999999999999888621100 00 0 0123444555555677889
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC---CCcHHHHHHH--HHHhcccccccEE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG---FSDFPLLKLM--TEVFGTAIWFNTI 289 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~---~~D~~llk~L--~~~fg~~i~k~vI 289 (791)
.++||||||..+ ....+...+ ..+|++++|++.+.-... ....++.+.+ ...+| -.++|
T Consensus 86 ~i~liDtPGh~d-----------f~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g---i~~iI 149 (447)
T PLN00043 86 YCTVIDAPGHRD-----------FIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG---VKQMI 149 (447)
T ss_pred EEEEEECCCHHH-----------HHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC---CCcEE
Confidence 999999999732 222333333 467999999665431100 0011222222 22223 13678
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+++||+|+.
T Consensus 150 V~vNKmD~~ 158 (447)
T PLN00043 150 CCCNKMDAT 158 (447)
T ss_pred EEEEcccCC
Confidence 899999975
No 302
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.6e-05 Score=87.22 Aligned_cols=131 Identities=24% Similarity=0.353 Sum_probs=78.6
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEE-e----E-------------ECC---------
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVK-G----S-------------VNG--------- 213 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~-~----~-------------~~G--------- 213 (791)
+.+...-|+++|+-..||||+||.|++.+.... ....|+|.....+. + . +.|
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 444556899999999999999999998765432 12235555443332 0 0 000
Q ss_pred -------------eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh
Q 003857 214 -------------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF 280 (791)
Q Consensus 214 -------------~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~f 280 (791)
..|.||||||+.+..-+...+.-.....+.-|+ .++|.|+++ .|....+-.| +.-+.|...-
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa--eR~D~IiLl--fD~hKLDIsd-Ef~~vi~aLk 208 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA--ERVDRIILL--FDAHKLDISD-EFKRVIDALK 208 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH--HhccEEEEE--echhhccccH-HHHHHHHHhh
Confidence 258999999998763221122222333444444 467999998 5544433233 3333444444
Q ss_pred cccccccEEEEEeccCCCC
Q 003857 281 GTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 281 g~~i~k~vIVVLTK~D~l~ 299 (791)
|.+ ..+-||+||+|...
T Consensus 209 G~E--dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 209 GHE--DKIRVVLNKADQVD 225 (532)
T ss_pred CCc--ceeEEEeccccccC
Confidence 444 56778999999874
No 303
>PRK13768 GTPase; Provisional
Probab=98.09 E-value=5.4e-06 Score=88.18 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=45.5
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
.+++||||||..+... .......+.+.+.....+++++|++..... +..+......+....-.....+.++|+|
T Consensus 97 ~~~~~~d~~g~~~~~~-----~~~~~~~~~~~l~~~~~~~ii~liD~~~~~-~~~d~~~~~~l~~~~~~~~~~~~i~v~n 170 (253)
T PRK13768 97 ADYVLVDTPGQMELFA-----FRESGRKLVERLSGSSKSVVVFLIDAVLAK-TPSDFVSLLLLALSVQLRLGLPQIPVLN 170 (253)
T ss_pred CCEEEEeCCcHHHHHh-----hhHHHHHHHHHHHhcCCeEEEEEechHHhC-CHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4799999999865421 122233333444332378999995443221 2233333333321111123589999999
Q ss_pred ccCCCCCC
Q 003857 294 HSSSTLPE 301 (791)
Q Consensus 294 K~D~l~pd 301 (791)
|+|.....
T Consensus 171 K~D~~~~~ 178 (253)
T PRK13768 171 KADLLSEE 178 (253)
T ss_pred hHhhcCch
Confidence 99998543
No 304
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=1.6e-05 Score=87.80 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=78.0
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhh------CCCcccc--cCCCCc---------eeE-EEEE-E--------------
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIF------DQTKTET--DAFQPA---------TDC-IREV-K-------------- 208 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLl------G~~~a~v--s~~~~~---------Tt~-~~~~-~-------------- 208 (791)
....+-.|++||-.|+||||++.+|+ |.....+ +.+.++ |+. +-.+ .
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 34556799999999999999999995 3333332 222221 111 1111 1
Q ss_pred --eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccc
Q 003857 209 --GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWF 286 (791)
Q Consensus 209 --~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k 286 (791)
..-.+.+++|+||.|.... +....++++.+.+...||.|+|| +|+... +......+.|...+..
T Consensus 177 ~~fKke~fdvIIvDTSGRh~q-------e~sLfeEM~~v~~ai~Pd~vi~V--mDasiG-----Qaae~Qa~aFk~~vdv 242 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQ-------EASLFEEMKQVSKAIKPDEIIFV--MDASIG-----QAAEAQARAFKETVDV 242 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhh-------hHHHHHHHHHHHhhcCCCeEEEE--Eecccc-----HhHHHHHHHHHHhhcc
Confidence 1224678999999999643 45566676665555689999999 665543 3344445555544433
Q ss_pred cEEEEEeccCCCCCC
Q 003857 287 NTILVMTHSSSTLPE 301 (791)
Q Consensus 287 ~vIVVLTK~D~l~pd 301 (791)
.-+++||.|--...
T Consensus 243 -g~vIlTKlDGhakG 256 (483)
T KOG0780|consen 243 -GAVILTKLDGHAKG 256 (483)
T ss_pred -ceEEEEecccCCCC
Confidence 34689999976433
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.05 E-value=4.7e-05 Score=84.22 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred CceEEEEEeecCCchHHHHhHhh
Q 003857 165 FSIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl 187 (791)
..+.|.|.|.+|+|||||++.|.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999874
No 306
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.6e-05 Score=88.10 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=61.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE------------------ECCeEEEEEeCCCCCCc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS------------------VNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~------------------~~G~~l~LIDTPGl~d~ 227 (791)
.+++.|||.||||||||+|+|+... +....++-+|-++...... +--.++.|||.+|+-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3789999999999999999999877 5556676677654433311 11246889999999766
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI 263 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~ 263 (791)
...+ +..-..+-..+ ..+|+++.|++....
T Consensus 81 As~G----eGLGNkFL~~I--RevdaI~hVVr~f~d 110 (372)
T COG0012 81 ASKG----EGLGNKFLDNI--REVDAIIHVVRCFGD 110 (372)
T ss_pred cccC----CCcchHHHHhh--hhcCeEEEEEEecCC
Confidence 4332 33333333333 246999999766543
No 307
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.00 E-value=0.00017 Score=82.23 Aligned_cols=134 Identities=15% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCCCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE------------------------------------
Q 003857 160 IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC------------------------------------ 203 (791)
Q Consensus 160 ~~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~------------------------------------ 203 (791)
+.-.+.-.+|+|||.-.+||||.+..|.....+.-++...-|+.
T Consensus 302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 33444557999999999999999999965444433322222222
Q ss_pred -----------------EEEEEeEECC---eEEEEEeCCCCCCccccchhh--hHHHHHHHHHHHhcCCCCEEEEEEecc
Q 003857 204 -----------------IREVKGSVNG---IKVTFIDTPGFLPSCVRNVKR--NRKIMLSVKKFIRRSPPDIVLYFERLD 261 (791)
Q Consensus 204 -----------------~~~~~~~~~G---~~l~LIDTPGl~d~~~~~~~~--n~~i~~~ikk~l~~~~~dvVLlV~~ld 261 (791)
...+..++.| .+.+++|.||+..+-+.++.. .+.|...-+.++ .+|+.|++|+.-.
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQDG 459 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQDG 459 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEeccC
Confidence 2222244554 368999999998765444322 233444444555 5789999996322
Q ss_pred CccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 262 LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 262 ~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
... .++.++..+-..+.+ .++.+|+|+||.|++.
T Consensus 460 SVD---AERSnVTDLVsq~DP-~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 460 SVD---AERSIVTDLVSQMDP-HGRRTIFVLTKVDLAE 493 (980)
T ss_pred Ccc---hhhhhHHHHHHhcCC-CCCeeEEEEeecchhh
Confidence 211 233444444444333 3689999999999874
No 308
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=86.93 Aligned_cols=66 Identities=27% Similarity=0.344 Sum_probs=51.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhC-----CCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD-----QTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG-----~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
...+++|+|-|||||||+||++-. ...+.++..++.|..+...........+.++||||+...++.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~ 212 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIV 212 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCC
Confidence 448999999999999999999932 245556777778888776554556678999999999987554
No 309
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.1e-05 Score=91.87 Aligned_cols=116 Identities=17% Similarity=0.287 Sum_probs=68.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEE--------------------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 208 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~-------------------------------------- 208 (791)
.+|+|.|++++||||+||+++-+.+...+. .++|.....+.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~-gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGI-GHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccc-cccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 799999999999999999998665544332 24443322222
Q ss_pred -----eEEC-C------eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHH
Q 003857 209 -----GSVN-G------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLM 276 (791)
Q Consensus 209 -----~~~~-G------~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L 276 (791)
..+. + -++.+||.||+.-.... -..+-++. ..+|+++||...... ....+.+.+...
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~--------tswid~~c--ldaDVfVlV~NaEnt-lt~sek~Ff~~v 257 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL--------TSWIDSFC--LDADVFVLVVNAENT-LTLSEKQFFHKV 257 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhh--------hHHHHHHh--hcCCeEEEEecCccH-hHHHHHHHHHHh
Confidence 0111 1 26899999999654211 12333333 367999999544322 111222333222
Q ss_pred HHHhcccccccEEEEEeccCCCC
Q 003857 277 TEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 277 ~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+ ...++.|+.||||...
T Consensus 258 s~-----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 258 SE-----EKPNIFILNNKWDASA 275 (749)
T ss_pred hc-----cCCcEEEEechhhhhc
Confidence 22 1467888889999873
No 310
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.96 E-value=2.4e-05 Score=87.37 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=60.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-----------------eEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-----------------~~l~LIDTPGl~d~~~ 229 (791)
+++.|||.||+|||||+|+|.+.....+..++.+|..+......+.+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999998764666666666665554444333 3689999999976532
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 260 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l 260 (791)
.+.......+..++ ..|++++|++.
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeC
Confidence 22112223333333 35999999654
No 311
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.96 E-value=3e-05 Score=79.65 Aligned_cols=118 Identities=22% Similarity=0.191 Sum_probs=73.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..+|+++|.+|||||+++...++...... +.|+.-+.......++| ..+.|+||+|..+. ... . .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~--y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~--------~~~-~--~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED--YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEF--------SAM-R--D 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc--cCCCccccceEEEEECCEEEEEEEEcCCCcccC--------hHH-H--H
Confidence 36999999999999999988776543322 33444444444445554 46789999994322 111 1 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ...|.+++|..++....-.....+.+.|.+.-+.. +.|+++|.||+|+..
T Consensus 70 ~~~--~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 70 LYI--RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLER 122 (196)
T ss_pred Hhh--ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchh
Confidence 123 34589999977765532222334555554443433 479999999999874
No 312
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.96 E-value=6.4e-05 Score=95.56 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=74.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc-------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD-------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs-------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
.=.+|||++|+||||+|+.- |-...... ...+.|..|.-.. ..+-++|||+|..-...+....+...+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf----~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF----TDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe----cCCEEEEcCCCccccCCCcccccHHHH
Confidence 35789999999999999776 43321111 0113344343322 345689999998755322112234444
Q ss_pred HHHHHHHhc----CCCCEEEEEEeccCcc-CCCCc--------HHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 240 LSVKKFIRR----SPPDIVLYFERLDLIS-MGFSD--------FPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 240 ~~ikk~l~~----~~~dvVLlV~~ld~~t-~~~~D--------~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+-+.+++ .+++.||++++++..- .+..+ +.-+..+.+.+|. ..|+.||+||+|++
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~--~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA--RFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecchhh
Confidence 554444433 3689999997765432 11111 1234455556664 48999999999987
No 313
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=1.8e-05 Score=80.33 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=67.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE--EEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~--~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.++|+|+|.+||||||++=.......-.. ...|.. .......+.+ +++.|+||+|...- +.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~---~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy------------~s 69 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHEN---IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERY------------HS 69 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccc---cccccccEEEEEEEEeCCcEEEEEEEEcCCcccc------------cc
Confidence 48999999999999999866643221110 011111 1112222333 67889999998422 12
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+.. +--.++++.|+|.+++....-...+..++.|++.-+++ ..+.+|-||+|+..
T Consensus 70 lap-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 70 LAP-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLE 124 (200)
T ss_pred ccc-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhh
Confidence 222 11147899999977765432222335555665553321 33445899999985
No 314
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=5.3e-05 Score=77.16 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=68.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCc-eeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~-Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.+|+++|..+|||||+|+..+-...-.. +.++ --+.......+.| +++.|+||+|- ++..--+-
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~--YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-----------ERFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhccc--ccceeeeEEEEEEEEEcCcEEEEEEEecccH-----------HHHhhhhh
Confidence 7999999999999999999874332211 1111 1123333334444 47889999997 22222334
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc--cccEEEEEeccCCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI--WFNTILVMTHSSSTLP 300 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i--~k~vIVVLTK~D~l~p 300 (791)
.+++ ...+++.|.++..... -..+-++|.++....- ...+++|-||.|+..+
T Consensus 90 sY~R--ds~vaviVyDit~~~S---fe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 90 SYIR--DSSVAVIVYDITDRNS---FENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhcc--CCeEEEEEEeccccch---HHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 4553 4578888866654321 1234444544433221 2567788999999854
No 315
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=9.6e-05 Score=74.81 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=68.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEE--EEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~--~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.++++++|.+|||||.|+-...+.....+.. .|-.+. ....+++ .+++.|+||+|... -.. .
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~--------frs---v 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQES--------FRS---V 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHH--------HHH---H
Confidence 4799999999999999998888765443322 222221 1123344 45789999999832 122 2
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
.+.+. ..+-..|+|.+++....-......|..++.... -.--++++-||+|+....
T Consensus 72 ~~syY--r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 72 TRSYY--RGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHh--ccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccc
Confidence 33333 245678888777643211111123333333321 124466788999987543
No 316
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=5.2e-05 Score=77.97 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
+.+.-++|+++|.+|||||-|+-...-.+ +...+-...--+.......++|+ +..|+||+|-.-. ..+.
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy--------rAit 80 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY--------RAIT 80 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccchhhh--------cccc
Confidence 44566899999999999999987776433 32221111111233334455664 6789999998311 1111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. .+. .++...|+|.++........-.+.++.|+..... ...+++|-||+|+..
T Consensus 81 S---aYY--rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 S---AYY--RGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNH 133 (222)
T ss_pred c---hhh--cccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhh
Confidence 1 122 3678889997775432212223455555554433 477889999999864
No 317
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.86 E-value=4.3e-05 Score=88.09 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=80.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc-CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..+||+|+|.-|+||||||=+|+.++....- ...+..+-+ ....-...+..|+||.--. .....+.++++
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~-------~~~~~l~~Eir 78 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDS-------DDRLCLRKEIR 78 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEeccccc-------chhHHHHHHHh
Confidence 4589999999999999999999987644321 111111111 1223345678999998442 22344455554
Q ss_pred HHHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~-~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ +|+|++|...|. .+.+......+-.|+..||+....|+|+|-||+|...
T Consensus 79 k------A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 79 K------ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred h------cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 4 589988876665 3433333456777888888888899999999999874
No 318
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.84 E-value=0.00016 Score=73.09 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=71.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc------cCCC---CceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhh
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET------DAFQ---PATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRN 235 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v------s~~~---~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n 235 (791)
..+|+|+|+-|+||||++.++.......+ .... ++|.-.........+ ..+.|+||||-. +-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~--------RF 81 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE--------RF 81 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH--------HH
Confidence 36999999999999999999987764333 1111 234334444455555 899999999983 22
Q ss_pred HHHHHHHHHHHhcCCCCEE-EEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 236 RKIMLSVKKFIRRSPPDIV-LYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 236 ~~i~~~ikk~l~~~~~dvV-LlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.-+++.+. .++... ++|+.....+ ..+..+++.+.... ..|.+|..||.|+..
T Consensus 82 ~fm~~~l~-----~ga~gaivlVDss~~~~--~~a~~ii~f~~~~~----~ip~vVa~NK~DL~~ 135 (187)
T COG2229 82 KFMWEILS-----RGAVGAIVLVDSSRPIT--FHAEEIIDFLTSRN----PIPVVVAINKQDLFD 135 (187)
T ss_pred HHHHHHHh-----CCcceEEEEEecCCCcc--hHHHHHHHHHhhcc----CCCEEEEeeccccCC
Confidence 33333221 234444 4443222222 24456666666542 278999999999874
No 319
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00032 Score=68.63 Aligned_cols=120 Identities=21% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKI 238 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i 238 (791)
-.+-++|++||..|||||-|+..... ..+..+ .+.|- +......+++| +++.|+||+|-. +-..|
T Consensus 4 ykflfkivlvgnagvgktclvrrftq-glfppg--qgatigvdfmiktvev~gekiklqiwdtagqe--------rfrsi 72 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQ-GLFPPG--QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE--------RFRSI 72 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhc-cCCCCC--CCceeeeeEEEEEEEECCeEEEEEEeeccchH--------HHHHH
Confidence 34568999999999999999987763 222221 12222 22222234444 578999999972 12222
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 239 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 239 ~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
. ..+. ..+|.+++|.+++....-...-+.++.|...-.. ..-.|+|-||.|+...
T Consensus 73 t---qsyy--rsahalilvydiscqpsfdclpewlreie~yan~--kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 73 T---QSYY--RSAHALILVYDISCQPSFDCLPEWLREIEQYANN--KVLKILVGNKIDLADR 127 (213)
T ss_pred H---HHHh--hhcceEEEEEecccCcchhhhHHHHHHHHHHhhc--ceEEEeeccccchhhh
Confidence 2 2333 2469999997776543323344677777766433 2456889999998743
No 320
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00017 Score=80.73 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=73.8
Q ss_pred CceEEEEEeecCCchHHHHhHhh---------------------CCCcccc----c-----CCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIF---------------------DQTKTET----D-----AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl---------------------G~~~a~v----s-----~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++++++|...+|||||+-.|+ |++-+.- + ...+.|-++.....+.+-+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 34899999999999999998884 2221110 0 1234555666666677778
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc------CCCCcHHHHHHHHHHhcccccccE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS------MGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t------~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
.++|+|+||..|. ... .+.. .+.+|+-+||++..... .....++ --.|.+.+| -...
T Consensus 86 ~~tIiDaPGHrdF-------vkn---mItG---asqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG---i~~l 148 (428)
T COG5256 86 NFTIIDAPGHRDF-------VKN---MITG---ASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG---IKQL 148 (428)
T ss_pred eEEEeeCCchHHH-------HHH---hhcc---hhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC---CceE
Confidence 8999999997543 111 1111 13679888886554331 1112222 224455666 3689
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
||++||+|...
T Consensus 149 IVavNKMD~v~ 159 (428)
T COG5256 149 IVAVNKMDLVS 159 (428)
T ss_pred EEEEEcccccc
Confidence 99999999874
No 321
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.79 E-value=0.0001 Score=72.94 Aligned_cols=117 Identities=20% Similarity=0.145 Sum_probs=67.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
..++|+|+|.+|||||||+-....... ++..++|- +.......++|. ++.|+||+|-.... .
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f---d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR-----------t 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF---DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR-----------T 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc---CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh-----------c
Confidence 458999999999999999977764321 22334433 344445566665 78999999973211 1
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
-.-.+. .++..+++|.++.....-......++.|.... ..-..-.++|-||+|.-
T Consensus 76 LTpSyy--RgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ys-tn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 76 LTPSYY--RGAQGIILVYDVTSRDTFVKLDIWLKELDLYS-TNPDIIKMLVGNKIDKE 130 (209)
T ss_pred cCHhHh--ccCceeEEEEEccchhhHHhHHHHHHHHHhhc-CCccHhHhhhcccccch
Confidence 111222 36788888866654321001112334443332 22123345789999964
No 322
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00025 Score=81.48 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CCeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 161 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 161 ~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
.....+..|-|+|.---|||||+-+|-+..++... ..+.|..+-.+...+ +|..++|.||||-.-.
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF------------ 214 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-AGGITQHIGAFTVTLPSGKSITFLDTPGHAAF------------ 214 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhh-cCCccceeceEEEecCCCCEEEEecCCcHHHH------------
Confidence 34456789999999999999999999987776653 235666665544332 7899999999998321
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+++.. -..-.|+|++|+..|.-- ..++++.|+-.- +...|+|+.+||+|..
T Consensus 215 ~aMRaR-GA~vtDIvVLVVAadDGV----mpQT~EaIkhAk--~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 215 SAMRAR-GANVTDIVVLVVAADDGV----MPQTLEAIKHAK--SANVPIVVAINKIDKP 266 (683)
T ss_pred HHHHhc-cCccccEEEEEEEccCCc----cHhHHHHHHHHH--hcCCCEEEEEeccCCC
Confidence 122210 012368999997766432 235666665442 3368999999999965
No 323
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.76 E-value=0.00015 Score=79.06 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG 188 (791)
....|.|+|++|+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999853
No 324
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.75 E-value=9.7e-05 Score=74.64 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=67.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc----cCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET----DAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKI 238 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v----s~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i 238 (791)
..++|.++|.+|||||||+|.....+-..- -...-.|+++ .+++ ..+.|+||+|-...
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev-----~Vd~~~vtlQiWDTAGQERF----------- 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV-----QVDDRSVTLQIWDTAGQERF----------- 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE-----EEcCeEEEEEEEecccHHHh-----------
Confidence 348999999999999999999976432211 1111234433 3344 46789999997321
Q ss_pred HHHHH-HHHhcCCCCEEEEEEeccCccCCCCcHHHH-HHHHHHhc--ccccccEEEEEeccCCC
Q 003857 239 MLSVK-KFIRRSPPDIVLYFERLDLISMGFSDFPLL-KLMTEVFG--TAIWFNTILVMTHSSST 298 (791)
Q Consensus 239 ~~~ik-k~l~~~~~dvVLlV~~ld~~t~~~~D~~ll-k~L~~~fg--~~i~k~vIVVLTK~D~l 298 (791)
+++. .+. .++|++++|.+++.... ....... +.+...-. .....|.||+-||.|..
T Consensus 72 -qsLg~aFY--RgaDcCvlvydv~~~~S-fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 72 -QSLGVAFY--RGADCCVLVYDVNNPKS-FENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred -hhccccee--cCCceEEEEeecCChhh-hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 1111 112 47899999977765431 1111111 22222111 12357899999999975
No 325
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.73 E-value=9e-05 Score=80.99 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=62.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE--------------C---CeEEEEEeCCCCCCc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--------------N---GIKVTFIDTPGFLPS 227 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~--------------~---G~~l~LIDTPGl~d~ 227 (791)
..++|.|||.||||||||+|+|...... ...++-+|-++.+....+ . ...+.|+|++|+-..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 5689999999999999999999987665 666777777655443222 1 136899999999766
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL 262 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~ 262 (791)
...+ +..-..+-..+ ..+|.++.|++...
T Consensus 98 As~G----~GLGN~FLs~i--R~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAG----EGLGNKFLSHI--RHVDAIFHVVRAFE 126 (391)
T ss_pred cccC----cCchHHHHHhh--hhccceeEEEEecC
Confidence 4433 33333333333 24588888865543
No 326
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.71 E-value=0.0002 Score=82.51 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=65.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc--CCCCceeE----------------EEEE---E--------e------
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDC----------------IREV---K--------G------ 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs--~~~~~Tt~----------------~~~~---~--------~------ 209 (791)
..++|.++|.-..|||||+.+|.|....... ...+.|-+ +..+ . .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 3489999999999999999999975432210 00111100 0000 0 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
..-...+.||||||.. ...+.+...+ ..+|++++|++++.........+.+. +.+.+|- +++|
T Consensus 113 ~~~~~~i~~IDtPGH~-----------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iI 175 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-----------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHII 175 (460)
T ss_pred ccccceEeeeeCCCHH-----------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEE
Confidence 0012478999999962 2223333323 35799999976653211111122232 2333342 5789
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+|+||+|+.
T Consensus 176 VvlNKiDlv 184 (460)
T PTZ00327 176 ILQNKIDLV 184 (460)
T ss_pred EEEeccccc
Confidence 999999986
No 327
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.69 E-value=0.00011 Score=71.78 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=66.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
++.+|+|.+|||||||+-...... +.-+ + -+|. +.......+.| .++.|+||+|-. .-..+ .
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~s-Y-itTiGvDfkirTv~i~G~~VkLqIwDtAGqE--------rFrti---t 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGS-Y-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQE--------RFRTI---T 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccc-e-EEEeeeeEEEEEeecCCcEEEEEEeecccHH--------HHHHH---H
Confidence 578899999999999986665432 2111 1 1222 22222233444 578999999972 12222 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+. .++|.+++|.++.....-..-.+.++.+...+. ..+-++|-||.|..
T Consensus 75 styy--rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 75 STYY--RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDP 125 (198)
T ss_pred HHHc--cCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCc
Confidence 2222 478999999766543222223345555555443 36788999999975
No 328
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.69 E-value=8.3e-05 Score=79.22 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=52.8
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc--ccccccEEEE
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILV 291 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg--~~i~k~vIVV 291 (791)
.+.+||||||-.+.-.= .....-|.+.+ ....|-+|+||++....+. -...+..+.-.+. -....|.|+|
T Consensus 116 ~~~~liDTPGQIE~FtW-SAsGsIIte~l----ass~ptvv~YvvDt~rs~~---p~tFMSNMlYAcSilyktklp~ivv 187 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTW-SASGSIITETL----ASSFPTVVVYVVDTPRSTS---PTTFMSNMLYACSILYKTKLPFIVV 187 (366)
T ss_pred cCEEEEcCCCceEEEEe-cCCccchHhhH----hhcCCeEEEEEecCCcCCC---chhHHHHHHHHHHHHHhccCCeEEE
Confidence 46899999998764210 01123333333 3356789999954433321 1122221111111 0124799999
Q ss_pred EeccCCCCCCCCCCCccchHHHHhhChHHHHHHHHHH
Q 003857 292 MTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQA 328 (791)
Q Consensus 292 LTK~D~l~pd~~~~~~~~~e~~i~q~~~~lq~~I~q~ 328 (791)
|||+|....+ -..+|+.. -+.+|+.+.++
T Consensus 188 fNK~Dv~d~~-------fa~eWm~D-fE~FqeAl~~~ 216 (366)
T KOG1532|consen 188 FNKTDVSDSE-------FALEWMTD-FEAFQEALNEA 216 (366)
T ss_pred EecccccccH-------HHHHHHHH-HHHHHHHHHhh
Confidence 9999987432 12344442 34677777763
No 329
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.67 E-value=2.4e-05 Score=86.77 Aligned_cols=65 Identities=32% Similarity=0.546 Sum_probs=56.2
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
.+...+++.|+|-|||||||+||+|..+....++..++.|+..+.+.+ +..|.|+|.||+.-...
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPPSI 312 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeecCC
Confidence 456789999999999999999999999988888888788888777664 78899999999986644
No 330
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.65 E-value=0.00028 Score=69.41 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=73.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..++|+++|--+||||+++..|+--+...-....++..++.....+- .| -.++|.||+|+.+.. .+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~-----------~e 76 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ-----------QE 76 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCch-----------hh
Confidence 45899999999999999998876433333334445555554444332 22 368999999997541 12
Q ss_pred HH-HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 242 VK-KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 242 ik-k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
+. .|+ .-+|.+++|.+...... ..-.++++.-.+.+...-..+++++.||.|...|.
T Consensus 77 Lprhy~--q~aDafVLVYs~~d~eS-f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 77 LPRHYF--QFADAFVLVYSPMDPES-FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred hhHhHh--ccCceEEEEecCCCHHH-HHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence 22 233 34699999854433211 11223333222333334457899999999988554
No 331
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00015 Score=90.60 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=76.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC-CCcccc----cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFD-QTKTET----DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG-~~~a~v----s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.=-+|||++|+||||++..--- ...... ....++|..|.-.. +..-++|||+|..-...+....+...+..
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf----~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWF----TDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred CceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccc----ccceEEEcCCcceecccCcchhhHHHHHH
Confidence 3568899999999998754422 111111 11122355555322 45669999999987643333456666666
Q ss_pred HHHHHhc----CCCCEEEEEEeccCc-cCCCCcH-H-------HHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRR----SPPDIVLYFERLDLI-SMGFSDF-P-------LLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~----~~~dvVLlV~~ld~~-t~~~~D~-~-------llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+-..+++ .+++.|++.+++... +.+..+. . -++.|.+.++ +..|+++++||.|+++
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence 5444433 368988888766543 2222221 1 1344455554 3589999999999985
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.60 E-value=8.6e-05 Score=73.66 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
.+.+++||||||.... +...+..+..+.....++.+++|++. .+. ....+.+..+.+..+ ...+|
T Consensus 81 ~~~d~viiDt~g~~~~-------~~~~l~~l~~l~~~~~~~~~~lVv~~--~~~-~~~~~~~~~~~~~~~-----~~~vi 145 (173)
T cd03115 81 ENFDVVIVDTAGRLQI-------DENLMEELKKIKRVVKPDEVLLVVDA--MTG-QDAVNQAKAFNEALG-----ITGVI 145 (173)
T ss_pred CCCCEEEEECcccchh-------hHHHHHHHHHHHhhcCCCeEEEEEEC--CCC-hHHHHHHHHHHhhCC-----CCEEE
Confidence 3668999999999532 34445555554433357899999554 322 122233333333322 35678
Q ss_pred EeccCCCC
Q 003857 292 MTHSSSTL 299 (791)
Q Consensus 292 LTK~D~l~ 299 (791)
+||.|...
T Consensus 146 ltk~D~~~ 153 (173)
T cd03115 146 LTKLDGDA 153 (173)
T ss_pred EECCcCCC
Confidence 99999764
No 333
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00046 Score=79.46 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=77.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC---CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~---G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.+..|.++|.---|||||+-+|-+.+++.... .+.|.++-.+....+ ...++||||||-... ..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea-GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF------------t~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA-GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF------------TA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccC-CceeeEeeeEEEEeccCCCceEEEEcCCcHHHH------------HH
Confidence 34689999999999999999998877665433 366778888877774 478999999998322 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++.- -..=.|+++||+++|.--. .+..+.++.++.. +.|++|.+||+|..
T Consensus 71 mRaR-Ga~vtDIaILVVa~dDGv~-pQTiEAI~hak~a-----~vP~iVAiNKiDk~ 120 (509)
T COG0532 71 MRAR-GASVTDIAILVVAADDGVM-PQTIEAINHAKAA-----GVPIVVAINKIDKP 120 (509)
T ss_pred HHhc-CCccccEEEEEEEccCCcc-hhHHHHHHHHHHC-----CCCEEEEEecccCC
Confidence 1110 0012589999977764321 2223333333332 58999999999987
No 334
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00056 Score=70.78 Aligned_cols=115 Identities=11% Similarity=0.218 Sum_probs=69.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE--EEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~--~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
-.|+++|.+++|||+++-.|.... .+++-+. ........+...+.|||-||-. +...+ +..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs------~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~-------rlR~k----l~e 101 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS------HRGTVTSIEPNEATYRLGSENVTLVDLPGHS-------RLRRK----LLE 101 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC------ccCeeeeeccceeeEeecCcceEEEeCCCcH-------HHHHH----HHH
Confidence 489999999999999987775431 2122221 2333444556668999999983 11222 222
Q ss_pred HHh-cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc----ccccccEEEEEeccCCCCC
Q 003857 245 FIR-RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG----TAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 245 ~l~-~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg----~~i~k~vIVVLTK~D~l~p 300 (791)
+++ ...+-.|+|| +|+.+...+-+.+.+.+-.+.- ..-..++.|..||-|+...
T Consensus 102 ~~~~~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HccccccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 232 1245678888 4544433344445555544432 2335789999999998853
No 335
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.54 E-value=0.00033 Score=69.33 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|..|+||||+++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999765
No 336
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00085 Score=80.78 Aligned_cols=115 Identities=14% Similarity=0.040 Sum_probs=73.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc--cCC---------------CCceeEEEEEEeEECC-eEEEEEeCCCCCCc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNG-IKVTFIDTPGFLPS 227 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~---------------~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~ 227 (791)
-.+|.|+|...+|||||.-+|+-..-.+. +.. .+.|-........|.+ ..++||||||.-|.
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc
Confidence 36999999999999999988853221111 111 1234445556678886 99999999999876
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. .++.++++- .|..+.|++...--. ..-..+++...+. ..|.++++||+|.+.
T Consensus 90 t-------~EV~rslrv------lDgavvVvdaveGV~-~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 90 T-------IEVERSLRV------LDGAVVVVDAVEGVE-PQTETVWRQADKY-----GVPRILFVNKMDRLG 142 (697)
T ss_pred H-------HHHHHHHHh------hcceEEEEECCCCee-ecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence 3 223334432 266666643432211 1223455555544 479999999999874
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.49 E-value=0.0001 Score=78.45 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.5
Q ss_pred CceEEEEEeecCCchHHHHhHhh
Q 003857 165 FSIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl 187 (791)
...+|-|-|+||+|||||++.|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 34899999999999999999994
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.46 E-value=0.0007 Score=73.33 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCCCCceEEEEEeecCCchHHHHhHhh
Q 003857 161 PDLDFSIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 161 ~~~~~~l~IlLVGktGvGKSTLINsLl 187 (791)
+...+..+|-|-|.|||||||||-.|.
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 334456799999999999999999983
No 339
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00057 Score=66.89 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=65.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc--cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
-++|+|+|.+.|||||++-.-++....+. +.+ +.--.+..+...-+.+++.++||+|..- .+.+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKvKTvyr~~kRiklQiwDTagqEr------------yrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRSDKRIKLQIWDTAGQER------------YRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEEeEeeecccEEEEEEEecccchh------------hhHHH
Confidence 46999999999999999988887643321 111 1111122222122346899999999831 12222
Q ss_pred H-HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 K-FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k-~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. +. .+++.++++.++.....-..-......|+... .-..++|+|-||||+-.
T Consensus 88 Tayy--RgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 88 TAYY--RGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDS 140 (193)
T ss_pred HHHh--hccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCcc
Confidence 1 22 46789999855543221001112222222221 12368899999999863
No 340
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.45 E-value=5.8e-05 Score=79.79 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHH----HHHHhcccccccEEE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKL----MTEVFGTAIWFNTIL 290 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~----L~~~fg~~i~k~vIV 290 (791)
.+.|+||||-.+--. .......+.+.+.....-+++++ +|..... .....+.. +.-.+ ....|.|.
T Consensus 92 ~y~l~DtPGQiElf~-----~~~~~~~i~~~L~~~~~~~~v~L--vD~~~~~-~~~~f~s~~L~s~s~~~--~~~lP~vn 161 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-----HSDSGRKIVERLQKNGRLVVVFL--VDSSFCS-DPSKFVSSLLLSLSIML--RLELPHVN 161 (238)
T ss_dssp SEEEEE--SSHHHHH-----HSHHHHHHHHTSSS----EEEEE--E-GGG-S-SHHHHHHHHHHHHHHHH--HHTSEEEE
T ss_pred cEEEEeCCCCEEEEE-----echhHHHHHHHHhhhcceEEEEE--Eeccccc-ChhhHHHHHHHHHHHHh--hCCCCEEE
Confidence 789999999854321 12223333344433223456777 4433221 11122211 11111 12489999
Q ss_pred EEeccCCCC
Q 003857 291 VMTHSSSTL 299 (791)
Q Consensus 291 VLTK~D~l~ 299 (791)
|+||+|+..
T Consensus 162 vlsK~Dl~~ 170 (238)
T PF03029_consen 162 VLSKIDLLS 170 (238)
T ss_dssp EE--GGGS-
T ss_pred eeeccCccc
Confidence 999999984
No 341
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.41 E-value=0.0002 Score=75.47 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=63.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.-+|+++|-|.|||||++.+|.... .....+..+|-.+.......+|-.+.+.|.||+.+....+.-+. +++...
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG----RQviav 136 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG----RQVIAV 136 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC----ceEEEE
Confidence 4699999999999999999998744 23334556777888888899999999999999987643321111 121111
Q ss_pred HhcCCCCEEEEEEeccCc
Q 003857 246 IRRSPPDIVLYFERLDLI 263 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~ 263 (791)
. ..+|+||.| +|+.
T Consensus 137 A--rtaDlilMv--LDat 150 (364)
T KOG1486|consen 137 A--RTADLILMV--LDAT 150 (364)
T ss_pred e--ecccEEEEE--ecCC
Confidence 1 257999999 5554
No 342
>PRK01889 GTPase RsgA; Reviewed
Probab=97.35 E-value=0.00022 Score=79.73 Aligned_cols=60 Identities=27% Similarity=0.379 Sum_probs=38.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCC-------CceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~-------~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
-+++|+|.+|+|||||+|.|+|.....++.+. .+|+....+. +.+ ...++||||+.....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~--l~~-~~~l~DtpG~~~~~l 262 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP--LPS-GGLLIDTPGMRELQL 262 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE--ecC-CCeecCCCchhhhcc
Confidence 48999999999999999999987665443221 1222222111 211 236889999976543
No 343
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.30 E-value=0.00086 Score=65.84 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.9
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
+|.++|++|+||||++..|.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~ 20 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALI 20 (148)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999885
No 344
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.30 E-value=0.0001 Score=81.59 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=49.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCcc
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~ 228 (791)
...+-|.+||.||+||||+||+|-..++..|.++++.|.--+.+.. -++|.|||+||+-..+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCC
Confidence 3458999999999999999999999999999888776664333332 3578999999997653
No 345
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0025 Score=73.98 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=72.2
Q ss_pred CceEEEEEeecCCchHHHHhHhh---C------------------CCcccc---------cCCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIF---D------------------QTKTET---------DAFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl---G------------------~~~a~v---------s~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++++++|...+||||+...|+ | ..-+.. ....+.|.++.....+-.-.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 45899999999999999998883 2 111100 11234566666666666778
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccC--cc----CCCCcHHHHHHHHHHhcccccccE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL--IS----MGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~--~t----~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
.++|+|+||..+.- . ..+.. ...+|+-++|++++. +. ....-++.+. +.+.+| -...
T Consensus 256 ~~tliDaPGhkdFi-~---------nmi~g---~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lg---i~ql 318 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFI-P---------NMISG---ASQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLG---ISQL 318 (603)
T ss_pred eEEEecCCCccccc-h---------hhhcc---ccccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcC---cceE
Confidence 99999999976651 1 11211 135688888855542 11 1111223333 334455 3688
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
||++||+|...
T Consensus 319 ivaiNKmD~V~ 329 (603)
T KOG0458|consen 319 IVAINKMDLVS 329 (603)
T ss_pred EEEeecccccC
Confidence 99999999883
No 346
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.13 E-value=0.0017 Score=63.68 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=69.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
+.+.++|--++||||++|.++--.-.. .-..|........+-+...+.++|.||-.-. ...++- |.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~e---dmiptvGfnmrk~tkgnvtiklwD~gGq~rf--------rsmWer---yc 86 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWER---YC 86 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchh---hhcccccceeEEeccCceEEEEEecCCCccH--------HHHHHH---Hh
Confidence 689999999999999999997522111 1123444444555567789999999998432 233332 33
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
.+.++++||++......-...+ ..+...+... .+.|++++-||.|..
T Consensus 87 --R~v~aivY~VDaad~~k~~~sr---~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 87 --RGVSAIVYVVDAADPDKLEASR---SELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred --hcCcEEEEEeecCCcccchhhH---HHHHHHhcchhhcCCcEEEecccccCc
Confidence 3569999995443322111112 2233333222 257899999999975
No 347
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.08 E-value=0.0028 Score=72.00 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=66.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc-----c-------cCC---CCceeEEEEEEeEECCeEEEEEeCCCCCCccccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE-----T-------DAF---QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~-----v-------s~~---~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~ 231 (791)
-+|+|+-..--|||||+..|+.+.-.- + ++. .+.|--.......++|.++.|+||||-.|...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG-- 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG-- 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc--
Confidence 489999999999999999997542110 1 111 12222233334678899999999999988742
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~l-d~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+.++++. -+|.||+++++ ++.-. +-+-+ +++.|.. +.+-|+|+||+|..
T Consensus 84 --EVERvl~---------MVDgvlLlVDA~EGpMP--QTrFV---lkKAl~~--gL~PIVVvNKiDrp 133 (603)
T COG1217 84 --EVERVLS---------MVDGVLLLVDASEGPMP--QTRFV---LKKALAL--GLKPIVVINKIDRP 133 (603)
T ss_pred --hhhhhhh---------hcceEEEEEEcccCCCC--chhhh---HHHHHHc--CCCcEEEEeCCCCC
Confidence 2333332 23777666333 33211 11122 2333322 35667899999976
No 348
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0047 Score=71.17 Aligned_cols=113 Identities=24% Similarity=0.331 Sum_probs=65.1
Q ss_pred CCCCCceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 161 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 161 ~~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
++...++.++|||+||.||||||.+|..+-.-.+ +.+.+..| .+.+ .-+++++..+|. |- + .+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT---vvsg--K~RRiTflEcp~--Dl-------~--~m 127 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT---VVSG--KTRRITFLECPS--DL-------H--QM 127 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE---Eeec--ceeEEEEEeChH--HH-------H--HH
Confidence 3455678999999999999999999975432211 22222211 1111 235788888882 21 1 11
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
-.+.+. +|+||++ +|+.-. -++++++.|.-... .-...++.|+||.|+..
T Consensus 128 iDvaKI-----aDLVlLl--IdgnfG--fEMETmEFLnil~~-HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 128 IDVAKI-----ADLVLLL--IDGNFG--FEMETMEFLNILIS-HGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred HhHHHh-----hheeEEE--eccccC--ceehHHHHHHHHhh-cCCCceEEEEeeccccc
Confidence 122221 4899888 554321 23345544433222 22467888999999984
No 349
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0039 Score=72.05 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=71.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccc--------------ccCCCCceeEEEEEEeEECC---eEEEEEeCCCCCCc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTE--------------TDAFQPATDCIREVKGSVNG---IKVTFIDTPGFLPS 227 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~--------------vs~~~~~Tt~~~~~~~~~~G---~~l~LIDTPGl~d~ 227 (791)
+--++.||-.---|||||.-.|+....++ +..-.+.|-..+.....+.+ +.+.+|||||--|.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 33589999999999999999996432211 11123445444444444444 88999999999886
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+. ++.+.+.. .+.+|+|+++..- ..-+++-.+...|.. +..+|.|+||+|+..
T Consensus 139 s~-------EVsRslaa------c~G~lLvVDA~qG----vqAQT~anf~lAfe~--~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 139 SG-------EVSRSLAA------CDGALLVVDASQG----VQAQTVANFYLAFEA--GLAIIPVLNKIDLPS 191 (650)
T ss_pred cc-------eehehhhh------cCceEEEEEcCcC----chHHHHHHHHHHHHc--CCeEEEeeeccCCCC
Confidence 42 22233332 2777777433321 122444445555543 367899999999864
No 350
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.92 E-value=0.0019 Score=67.73 Aligned_cols=126 Identities=15% Similarity=0.172 Sum_probs=72.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
-+|+++|++|+||||+=-.+|....+.-..-.+.|-++...+..+-| .-+.++|.-|-..- -+.....-+..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f-------men~~~~q~d~ 77 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF-------MENYLSSQEDN 77 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH-------HHHHHhhcchh
Confidence 48999999999999987777754433333334566676665554444 67889998776211 01111100000
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHH-HHHHhcccccccEEEEEeccCCCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKL-MTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~-L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
+ -+..++++||.++..... ..|....+. |...+.......+.+.++|.|+...+
T Consensus 78 i-F~nV~vli~vFDves~e~-~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 78 I-FRNVQVLIYVFDVESREM-EKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred h-heeheeeeeeeeccchhh-hhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 1 135789999966654422 223333322 22222223345688899999998543
No 351
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.88 E-value=0.0081 Score=75.35 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=60.9
Q ss_pred CchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC------------------eEEEEEeCCCCCCccccchhhhHHH
Q 003857 177 VGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG------------------IKVTFIDTPGFLPSCVRNVKRNRKI 238 (791)
Q Consensus 177 vGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G------------------~~l~LIDTPGl~d~~~~~~~~n~~i 238 (791)
++||||+-+|-+..++.- ...+.|.++-.+...+.. ..++|+||||.... ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~-EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKK-EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCcccc-cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 349999999998876543 233455555444333321 13899999996321 111
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 239 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 239 ~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..... ..+|++++|++++.. ........++.+... ..|+++|+||+|+.+
T Consensus 543 ---r~~g~--~~aDivlLVVDa~~G-i~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 ---RKRGG--SLADLAVLVVDINEG-FKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred ---HHhhc--ccCCEEEEEEECccc-CCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 11111 357999999766531 112333445444432 478999999999864
No 352
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0079 Score=68.18 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=76.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccc--cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.|+..|.---|||||+-++.|.....- ..-.+.|.+...+.....+..+.|||.||..+. +..+..-
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-----------i~~miag 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-----------ISNLLAG 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-----------HHHHHhh
Confidence 577889999999999999998643332 233567888888888888889999999999422 2222222
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ ..+|..++|++.|.- ......+.+. +.+.||- ++.++|+||+|...
T Consensus 71 ~--~~~d~alLvV~~deG-l~~qtgEhL~-iLdllgi---~~giivltk~D~~d 117 (447)
T COG3276 71 L--GGIDYALLVVAADEG-LMAQTGEHLL-ILDLLGI---KNGIIVLTKADRVD 117 (447)
T ss_pred h--cCCceEEEEEeCccC-cchhhHHHHH-HHHhcCC---CceEEEEecccccc
Confidence 2 467999999766421 1112223332 2345553 67899999999884
No 353
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0064 Score=60.87 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=68.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
-+++++|--|+|||||++.|-........ .|-.+......+.|.+++.+|--|-... .+.-+.|+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv----PTlHPTSE~l~Ig~m~ftt~DLGGH~qA-----------rr~wkdyf 85 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELSIGGMTFTTFDLGGHLQA-----------RRVWKDYF 85 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC----CCcCCChHHheecCceEEEEccccHHHH-----------HHHHHHHH
Confidence 59999999999999999999765544332 2233333345678999999999887322 22334455
Q ss_pred hcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~l-d~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l~ 299 (791)
..+|.++|.+++ |..+. . +....+...+..+ .+.|++|..||+|...
T Consensus 86 --~~v~~iv~lvda~d~er~-~---es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 86 --PQVDAIVYLVDAYDQERF-A---ESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred --hhhceeEeeeehhhHHHh-H---HHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 245777776322 22211 1 1222222222222 4689999999999764
No 354
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.0077 Score=59.46 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=60.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEE--EEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~--~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
.-++++|+|+.|.|||-|+........-.-+ +.|-.+. .....++| +++.|+||+|-. +...
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDds---sHTiGveFgSrIinVGgK~vKLQIWDTAGQE-----------rFRS 73 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDS---SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-----------RFRS 73 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccc---cceeeeeecceeeeecCcEEEEEEeecccHH-----------HHHH
Confidence 3479999999999999999877643221111 1222111 11123333 578999999972 2223
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-ccccccEEEEEeccCCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg-~~i~k~vIVVLTK~D~l~ 299 (791)
..+.+. .++-..|+|.++.... .-..+-.++.+..- ..-..-++++-||.|+-+
T Consensus 74 VtRsYY--RGAAGAlLVYD~Tsrd---sfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 74 VTRSYY--RGAAGALLVYDITSRD---SFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred HHHHHh--ccccceEEEEeccchh---hHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 333443 3556667775454321 11123334443321 111233445557888753
No 355
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.026 Score=62.22 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=61.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC--CCcccccCCCCceeEEEE----EEe---------EECCeEEEEEeCCCCCCcccc
Q 003857 166 SIRILVLGKTGVGKSATINSIFD--QTKTETDAFQPATDCIRE----VKG---------SVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG--~~~a~vs~~~~~Tt~~~~----~~~---------~~~G~~l~LIDTPGl~d~~~~ 230 (791)
.++|.|+|.-.+|||||..+|.. ...+--....++++.+.- ... +-....+++||.||-.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 38999999999999999999953 221111111122222111 000 1122467999999983
Q ss_pred chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc--cCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 231 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI--SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 231 ~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~--t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
..++.+..-. .-+|+.++|+++..- ++..+- + .|.+. ..++.+||+||.|.++.
T Consensus 82 ------sLIRtiigga--qiiDlm~lviDv~kG~QtQtAEc---L-iig~~----~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 ------SLIRTIIGGA--QIIDLMILVIDVQKGKQTQTAEC---L-IIGEL----LCKKLVVVINKIDVLPE 137 (522)
T ss_pred ------HHHHHHHhhh--heeeeeeEEEehhcccccccchh---h-hhhhh----hccceEEEEeccccccc
Confidence 1222221111 135888888655432 221111 1 12222 23678999999999853
No 356
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.56 E-value=0.0078 Score=55.83 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=55.6
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 248 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~ 248 (791)
|+|.|++|+||||++..|+..- +.++.-+|.+-+.+.... .....+...+.+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~--~~~~~i~~~~~~-~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAG--DSEQKIRDFFKK-AKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTT--HHHHHHHHHHHH-HHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------cccccccccccccccccc--cccccccccccc-ccc
Confidence 7899999999999999998542 233455555555422111 122233333333 222
Q ss_pred CCCCEEEEEEeccCccCCC------CcHHHHHHHHHHhccccc--ccEEEEEeccC
Q 003857 249 SPPDIVLYFERLDLISMGF------SDFPLLKLMTEVFGTAIW--FNTILVMTHSS 296 (791)
Q Consensus 249 ~~~dvVLlV~~ld~~t~~~------~D~~llk~L~~~fg~~i~--k~vIVVLTK~D 296 (791)
....+||+++.+|...... ....++..+...+..... .++++|+|--+
T Consensus 56 ~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 56 SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 2225889998888654221 123445555555543222 34566665443
No 357
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.016 Score=64.17 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=69.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc---------------------------c-----CCCCceeEEEEEEeEEC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET---------------------------D-----AFQPATDCIREVKGSVN 212 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v---------------------------s-----~~~~~Tt~~~~~~~~~~ 212 (791)
..++.+-+|..--||||||..|+-....+. + .-++.|-++....+.-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 348999999999999999999964332221 0 01223445444444446
Q ss_pred CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 213 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 213 G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
-++++|.||||-.+. .+.+.. -.+.+|+.+++ +|+...-...-+--..|...+|- +++++.+
T Consensus 85 KRkFIiADTPGHeQY-----------TRNMaT--GASTadlAIlL--VDAR~Gvl~QTrRHs~I~sLLGI---rhvvvAV 146 (431)
T COG2895 85 KRKFIIADTPGHEQY-----------TRNMAT--GASTADLAILL--VDARKGVLEQTRRHSFIASLLGI---RHVVVAV 146 (431)
T ss_pred cceEEEecCCcHHHH-----------hhhhhc--ccccccEEEEE--EecchhhHHHhHHHHHHHHHhCC---cEEEEEE
Confidence 689999999998432 111111 11345777666 34332101111222344555553 7999999
Q ss_pred eccCCCC
Q 003857 293 THSSSTL 299 (791)
Q Consensus 293 TK~D~l~ 299 (791)
||+|+..
T Consensus 147 NKmDLvd 153 (431)
T COG2895 147 NKMDLVD 153 (431)
T ss_pred eeecccc
Confidence 9999983
No 358
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.53 E-value=0.0062 Score=60.78 Aligned_cols=119 Identities=19% Similarity=0.111 Sum_probs=64.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEE--EeEE-CC--eEEEEEeCCCCCCccccchhhhHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREV--KGSV-NG--IKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~--~~~~-~G--~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
..++++|+|.+-||||+|+.....-..+..++ .|..+.-+ ..++ .| +++.|+||+|-. +..
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsd---ptvgvdffarlie~~pg~riklqlwdtagqe-----------rfr 72 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFR 72 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHH
Confidence 45899999999999999999887655444332 12111100 0111 23 578999999972 222
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...+.+.+ +.-.+|+|.++.....-..-...++.-+...+.....-..+|-+|+|+..
T Consensus 73 sitksyyr--nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 73 SITKSYYR--NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHhh--cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 23334443 23467777666544321111223333333333221223456789999874
No 359
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0077 Score=61.10 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=68.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..+|+++|--|+||||++++|--.+...+ ..|-........+.+..+.++|.-|-... +.+++ .+
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~--------R~lW~---~Y 81 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKL--------RPLWK---HY 81 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCccc--------ccchh---hh
Confidence 47999999999999999999954443332 22333333334456999999999988321 22222 23
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
. ...+.++|| +|..... .-.+.-+.+...+... -..++++..||-|..
T Consensus 82 ~--~~t~~lIfV--vDS~Dr~-Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 82 F--QNTQGLIFV--VDSSDRE-RIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred c--cCCcEEEEE--EeCCcHH-HHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 3 345899999 4443210 1112334444444332 257888899999975
No 360
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.37 E-value=0.013 Score=57.41 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=68.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+++|--|+||||++..|.+++........+..+. ..+..| ..+.++|.-|-..- +.++.
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k----~v~~~g~f~LnvwDiGGqr~I--------RpyWs--- 80 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK----KVEYDGTFHLNVWDIGGQRGI--------RPYWS--- 80 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceE----EEeecCcEEEEEEecCCcccc--------chhhh---
Confidence 458999999999999999999999987776443333222 223334 78999999887421 22332
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
.+. .+.|.++||++ ......-+ ++-..+.+.... -...|+.|-.||-|++.
T Consensus 81 NYy--envd~lIyVID--S~D~krfe-E~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 81 NYY--ENVDGLIYVID--STDEKRFE-EISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred hhh--hccceEEEEEe--CCchHhHH-HHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 233 35799999954 22111111 222222222211 11356777777777764
No 361
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.18 E-value=0.0097 Score=61.41 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=69.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-Ce--EEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
.++++|||-.++|||.++-+.... .+... +-|+-.+-......++ |+ .+.++||+|-.+- +. ++.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~-yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-------Dr--lRp- 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEE-YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-------DR--LRP- 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCccc-ccCeEEccceEEEEecCCCEEEEeeeecCCCccc-------cc--ccc-
Confidence 479999999999999998666532 22221 2233223333334553 54 6789999998654 11 122
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCC-CcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGF-SDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~-~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+.-...|++|+|..++....-. .-...+-.++..+ -..|+|+|.||.|+.
T Consensus 72 ---lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 72 ---LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLR 122 (198)
T ss_pred ---cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhh
Confidence 2224679999987766543111 1113334444443 247999999999987
No 362
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.058 Score=52.89 Aligned_cols=114 Identities=12% Similarity=0.121 Sum_probs=67.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+.+|-+++||||++-+|.-.....+ -.|+.......+..+..+.+.|.-|-. .-+.. -+.+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~----ipTvGFnvetVtykN~kfNvwdvGGqd--------~iRpl---WrhY 81 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQD--------KIRPL---WRHY 81 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc----ccccceeEEEEEeeeeEEeeeeccCch--------hhhHH---HHhh
Confidence 37999999999999999988854322111 123334444445678899999987762 11222 2333
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cc-cccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AI-WFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i-~k~vIVVLTK~D~l~ 299 (791)
. .+...++|| +|+...+. -.+.-..+.++.+. ++ ..+++|..||-|+..
T Consensus 82 y--~gtqglIFV--~Dsa~~dr-~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 82 Y--TGTQGLIFV--VDSADRDR-IEEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred c--cCCceEEEE--Eeccchhh-HHHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 3 356788888 44332211 11334455555554 22 345667789988763
No 363
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.025 Score=64.24 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=66.6
Q ss_pred eEEEEEeecCCchHHHHhHhh--CCCcccccCCC---------------------CceeEEEEEEeEECCeEEEEEeCCC
Q 003857 167 IRILVLGKTGVGKSATINSIF--DQTKTETDAFQ---------------------PATDCIREVKGSVNGIKVTFIDTPG 223 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl--G~~~a~vs~~~---------------------~~Tt~~~~~~~~~~G~~l~LIDTPG 223 (791)
-+.+||-.|-+||||+--+|+ |......+.+. +.|+.+- .....|..+.|.||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVM--qF~Y~~~~iNLLDTPG 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVM--QFDYADCLVNLLDTPG 90 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEE--EeccCCeEEeccCCCC
Confidence 488999999999999998884 32221111111 1122221 2345789999999999
Q ss_pred CCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 224 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 224 l~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
-.|-+ +...+.+. .+|..+.| +|+... .+-++++.+.-..-. ..|++-.+||+|..
T Consensus 91 HeDFS-------EDTYRtLt------AvDsAvMV--IDaAKG--iE~qT~KLfeVcrlR--~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFS-------EDTYRTLT------AVDSAVMV--IDAAKG--IEPQTLKLFEVCRLR--DIPIFTFINKLDRE 146 (528)
T ss_pred ccccc-------hhHHHHHH------hhheeeEE--EecccC--ccHHHHHHHHHHhhc--CCceEEEeeccccc
Confidence 98763 33444432 34888888 443321 233455544322111 37888889999865
No 364
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.00 E-value=0.052 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 489999999999999999999964
No 365
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.82 E-value=0.041 Score=54.76 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
..++++|||||+.... ... ..+ ..+|.+++|...+..+.. .-..+++.+.+. ..+..+|
T Consensus 91 ~~~d~viiDtpp~~~~---------~~~----~~l--~~aD~vliv~~~~~~~~~-~~~~~~~~l~~~-----~~~~~vV 149 (179)
T cd03110 91 EGAELIIIDGPPGIGC---------PVI----ASL--TGADAALLVTEPTPSGLH-DLERAVELVRHF-----GIPVGVV 149 (179)
T ss_pred cCCCEEEEECcCCCcH---------HHH----HHH--HcCCEEEEEecCCcccHH-HHHHHHHHHHHc-----CCCEEEE
Confidence 4678999999966321 111 122 246899999766644321 112344444332 3567899
Q ss_pred EeccCCC
Q 003857 292 MTHSSST 298 (791)
Q Consensus 292 LTK~D~l 298 (791)
+|++|..
T Consensus 150 ~N~~~~~ 156 (179)
T cd03110 150 INKYDLN 156 (179)
T ss_pred EeCCCCC
Confidence 9999853
No 366
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.82 E-value=0.006 Score=58.98 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=34.5
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
|+|+|++|+||||+++.|............+.||+... ..+.+|.+..++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~-~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR-PGEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCC-CCccCCceeEEeCHHHH
Confidence 68999999999999999997632211111233333211 22356778888876555
No 367
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.81 E-value=0.016 Score=58.38 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.6
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
.++|.|--|+|||||||.|+
T Consensus 2 v~ii~GfLGsGKTTli~~ll 21 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLL 21 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57889999999999999998
No 368
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.76 E-value=0.0084 Score=62.26 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=65.6
Q ss_pred eEEEEEeecCCchHHHHhHhh------CCCccccc--CC-----CCceeEEEEEE-------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIF------DQTKTETD--AF-----QPATDCIREVK------------------------- 208 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~-----~~~Tt~~~~~~------------------------- 208 (791)
.-++|+|+.|+||||+.++|. |+..-.+. +. -+.|-++....
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~ 83 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLL 83 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHH
Confidence 457899999999999999994 55443331 10 01222211110
Q ss_pred -------eEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEE-EEEEeccCccCCCCcH---HHHHH
Q 003857 209 -------GSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIV-LYFERLDLISMGFSDF---PLLKL 275 (791)
Q Consensus 209 -------~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvV-LlV~~ld~~t~~~~D~---~llk~ 275 (791)
...+ .-...|+|.||-.+--+ .--++..+.+.++.....++ +|+ ++..-.-...+ -.+..
T Consensus 84 ~NldwL~~~~Gd~eddylifDcPGQIELyt-----H~pVm~~iv~hl~~~~F~~c~Vyl--ldsqf~vD~~KfiSG~lsA 156 (273)
T KOG1534|consen 84 ENLDWLEEEIGDVEDDYLIFDCPGQIELYT-----HLPVMPQIVEHLKQWNFNVCVVYL--LDSQFLVDSTKFISGCLSA 156 (273)
T ss_pred HHHHHHHhhccCccCCEEEEeCCCeeEEee-----cChhHHHHHHHHhcccCceeEEEE--eccchhhhHHHHHHHHHHH
Confidence 0111 23689999999876432 23344455555544444443 666 44432110111 12222
Q ss_pred HHHHhcccccccEEEEEeccCCCC
Q 003857 276 MTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 276 L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+.... ....|.|=|++|.|++.
T Consensus 157 lsAMi--~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 157 LSAMI--SLEVPHINVLSKMDLLK 178 (273)
T ss_pred HHHHH--HhcCcchhhhhHHHHhh
Confidence 22221 22478888999999884
No 369
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.75 E-value=0.0048 Score=61.31 Aligned_cols=55 Identities=25% Similarity=0.486 Sum_probs=35.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
.|+|+|++|+||||+++.|.+..........-+|+... .+...|..+.++++..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEEF 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHHH
Confidence 68999999999999999999864333222212232222 23346677777776654
No 370
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=95.74 E-value=0.0059 Score=60.57 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=70.1
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccc---cCCC--CceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTET---DAFQ--PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNR 236 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~v---s~~~--~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~ 236 (791)
...+.++|+++|.-=||||||+=...... +.. +.+. ..++. ...+-...++.|+||+|-....
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk---~n~ed~ra~L~IWDTAGQErfH-------- 76 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKK---VNVEDCRADLHIWDTAGQERFH-------- 76 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhcc---cccccceeeeeeeeccchHhhh--------
Confidence 35667999999999999999986554321 211 1000 01111 1111133578999999973221
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 237 KIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 237 ~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++-- +--.+.+.+|+|.++........-+..+..|+.++|.+ ...+||-||+|+-
T Consensus 77 ----ALGP-IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLE 131 (218)
T KOG0088|consen 77 ----ALGP-IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLE 131 (218)
T ss_pred ----ccCc-eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHH
Confidence 1111 11135688899966654322112335677888888876 5678899999975
No 371
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.025 Score=57.17 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=65.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc-----ccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK-----TETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~-----a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..|+|+|.-|+|||||+-++-.... ..++.+ -.|.........+++.++.++|--|- .....+++.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQ--------e~lrSlw~~ 88 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQ--------ESLRSLWKK 88 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCCh--------HHHHHHHHH
Confidence 6899999999999999977632211 111111 12223344445566789999997765 334445554
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.-. ..|+|+||++......-......++.+.+. -.--+.|+++.+||-|.-
T Consensus 89 yY~-----~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 89 YYW-----LAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHH-----HhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhh
Confidence 433 349999994443221111111222222111 001247899999999865
No 372
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.024 Score=66.81 Aligned_cols=112 Identities=15% Similarity=0.232 Sum_probs=62.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccccc---C----C---------CCceeEEEEEEeEE---CC--eEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETD---A----F---------QPATDCIREVKGSV---NG--IKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs---~----~---------~~~Tt~~~~~~~~~---~G--~~l~LIDTPGl~ 225 (791)
.+|.++|.-+.|||+|+..|.++...... . + .+++-...-..... +| +-+.++||||--
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 69999999999999999999875432210 0 0 00111111111111 22 357899999996
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l-d~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+.. .+.... + .-.|.+++|+++ ++-.. .-.++++..... ..++++|+||.|.+
T Consensus 209 nF~-------DE~ta~----l--~~sDgvVlvvDv~EGVml--ntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NFS-------DETTAS----L--RLSDGVVLVVDVAEGVML--NTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred cch-------HHHHHH----h--hhcceEEEEEEcccCcee--eHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 541 222222 2 234888777433 23222 122333332222 37999999999976
No 373
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.54 E-value=0.036 Score=59.43 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=44.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC-ccccc-CCCCceeEEEEEEe---EECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT-KTETD-AFQPATDCIREVKG---SVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~-~a~vs-~~~~~Tt~~~~~~~---~~~G~~l~LIDTPGl~d~ 227 (791)
..|.|+|+..+|||.|+|.|++.. .+.++ ...++|..+-.... ...+..++++||.|+.+.
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 589999999999999999999853 34443 34577776543322 124578999999999983
No 374
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.50 E-value=0.11 Score=57.75 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=38.5
Q ss_pred EEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccC
Q 003857 217 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 296 (791)
Q Consensus 217 ~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D 296 (791)
.||||+|+.+. ..-..+.+.++ ..++|+|+.+ + +.++...+++.++..-|.+ ++-+-|.+
T Consensus 215 ~iInT~g~i~~-----egy~~llhai~----~f~v~vviVL---g-------~ErLy~~lkk~~~~~~~v~-vv~lpKsg 274 (415)
T KOG2749|consen 215 CIINTCGWIEG-----EGYAALLHAIK----AFEVDVVIVL---G-------QERLYSSLKKDLPPKKNVR-VVKLPKSG 274 (415)
T ss_pred eEEeccceecc-----ccHHHHHHHHH----HcCccEEEEe---c-------cHHHHHHHHhhccccccce-EEEecCCC
Confidence 68999999763 12334444443 3577888776 1 2268888888887654443 34566766
Q ss_pred CC
Q 003857 297 ST 298 (791)
Q Consensus 297 ~l 298 (791)
..
T Consensus 275 Gv 276 (415)
T KOG2749|consen 275 GV 276 (415)
T ss_pred Ce
Confidence 54
No 375
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.49 E-value=0.089 Score=45.51 Aligned_cols=46 Identities=28% Similarity=0.368 Sum_probs=30.1
Q ss_pred EEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
|++.|..|+||||+.+.|...-.. . +. ++.. ++ +++++|+||..+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--~----g~-~v~~----~~--d~iivD~~~~~~~ 47 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--R----GK-RVLL----ID--DYVLIDTPPGLGL 47 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--C----CC-eEEE----EC--CEEEEeCCCCccc
Confidence 678899999999999888642111 0 00 1100 01 7899999999654
No 376
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.46 E-value=0.0091 Score=60.88 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=35.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDT 221 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDT 221 (791)
+.-|+|+|++||||||+++.|+.+.......+ +.||+..+ .++.+|....+++.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v-~~TTR~~r-~gE~~G~dY~fvs~ 57 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSI-SCTTRAPR-PGDEEGKTYFFLTI 57 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCcccccc-CccCCCCC-CCCCCCceeEeCCH
Confidence 36799999999999999999987653322333 55555332 23445666565543
No 377
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.096 Score=51.17 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=62.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc----cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET----DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v----s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
-++-+|+|.-|||||-|+......+...- -.+.-+| ++.++.+ ..+++.|+||+|-. +....
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgt-riievsg--qkiklqiwdtagqe-----------rfrav 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT-RIIEVSG--QKIKLQIWDTAGQE-----------RFRAV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecce-eEEEecC--cEEEEEEeecccHH-----------HHHHH
Confidence 37899999999999999988775432211 1111222 2333332 23578999999972 22222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l~ 299 (791)
.+.+. .++-..|.|.++...+. -..+-.++.+...- ....-++++-||+|+-.
T Consensus 77 trsyy--rgaagalmvyditrrst---ynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 77 TRSYY--RGAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHh--ccccceeEEEEehhhhh---hhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 33333 34556677755554321 11233344443221 11233556779999764
No 378
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.41 E-value=0.082 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999975
No 379
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.39 E-value=0.0061 Score=61.59 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEE--EEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~--~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++++|+|.-+|||||+|...... .+..+.-...-.+.. .+.....+..+.++||+|-.+. ..|.+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------DaItk-- 87 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------DAITK-- 87 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH--------HHHHH--
Confidence 3489999999999999999888732 111110000001111 1111223456789999997432 22222
Q ss_pred HHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld-~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
.+. .++...++|..-. ..+. ..-.+..+.+....+ ..|+++|-||+|++..
T Consensus 88 -Ayy--rgaqa~vLVFSTTDr~SF-ea~~~w~~kv~~e~~---~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 88 -AYY--RGAQASVLVFSTTDRYSF-EATLEWYNKVQKETE---RIPTVFVQNKIDLVED 139 (246)
T ss_pred -HHh--ccccceEEEEecccHHHH-HHHHHHHHHHHHHhc---cCCeEEeeccchhhHh
Confidence 223 3556666663221 1111 001122233333322 4799999999999843
No 380
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.36 E-value=0.038 Score=62.34 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.0
Q ss_pred ceEEEEEeecCCchHHHHhHhh
Q 003857 166 SIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl 187 (791)
..+|||+|+.++|||||.+.|+
T Consensus 73 ~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 73 VGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred CcEEEEECCcCcCHHHHHHHHH
Confidence 4699999999999999876664
No 381
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.031 Score=59.12 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=28.2
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc-ccEEEEEeccCCC
Q 003857 250 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW-FNTILVMTHSSST 298 (791)
Q Consensus 250 ~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~-k~vIVVLTK~D~l 298 (791)
++|+++.|++.+..+ ..+.+.+.+.- .++. +++.+|+||+|..
T Consensus 155 ~vD~vivVvDpS~~s-----l~taeri~~L~-~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 155 GVDLVIVVVDPSYKS-----LRTAERIKELA-EELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCCEEEEEeCCcHHH-----HHHHHHHHHHH-HHhCCceEEEEEeeccch
Confidence 578999995544332 35556665543 2334 8999999999853
No 382
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.098 Score=62.58 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=67.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEe------------------EECCeEEEEEeCCCCCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG------------------SVNGIKVTFIDTPGFLP 226 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~------------------~~~G~~l~LIDTPGl~d 226 (791)
.+..+.|+|..-.|||-|+..|-+.++..-. ..+.|..+-.... .+.---+.+|||||...
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege-aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE-AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc-ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3467999999999999999999887654332 2122332221111 11112478999999643
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. .| ++..- ..-.|+.++|+++-.- ....-++-++.|+.. ..|+||.|||+|.+
T Consensus 553 F------tn------lRsrg-sslC~~aIlvvdImhG-lepqtiESi~lLR~r-----ktpFivALNKiDRL 605 (1064)
T KOG1144|consen 553 F------TN------LRSRG-SSLCDLAILVVDIMHG-LEPQTIESINLLRMR-----KTPFIVALNKIDRL 605 (1064)
T ss_pred h------hh------hhhcc-ccccceEEEEeehhcc-CCcchhHHHHHHHhc-----CCCeEEeehhhhhh
Confidence 2 11 11110 1124788888554321 222334555555554 47999999999976
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.0074 Score=61.64 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=35.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDT 221 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDT 221 (791)
.-++|.||+||||||++..|+... ...-++ +.||+..+ .++++|+...||+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SV-S~TTR~pR-~gEv~G~dY~Fvs~ 56 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSV-SATTRKPR-PGEVDGVDYFFVTE 56 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEE-EeccCCCC-CCCcCCceeEeCCH
Confidence 678899999999999999999887 222233 33443222 23556777666553
No 384
>PTZ00099 rab6; Provisional
Probab=95.30 E-value=0.079 Score=53.31 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=40.6
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 293 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT 293 (791)
..+.|+||||.... ..+ ...++ ..+|++|+|.+++....-......+..+....+ ...++++|.|
T Consensus 29 v~l~iwDt~G~e~~--------~~~---~~~~~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgN 93 (176)
T PTZ00099 29 VRLQLWDTAGQERF--------RSL---IPSYI--RDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGN 93 (176)
T ss_pred EEEEEEECCChHHh--------hhc---cHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEE
Confidence 67899999998422 111 22334 467999999766543110011123333333322 2467899999
Q ss_pred ccCCC
Q 003857 294 HSSST 298 (791)
Q Consensus 294 K~D~l 298 (791)
|+|+.
T Consensus 94 K~DL~ 98 (176)
T PTZ00099 94 KTDLG 98 (176)
T ss_pred Ccccc
Confidence 99985
No 385
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.28 E-value=0.013 Score=55.32 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
-.++|+|++|+|||||++.|+|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3799999999999999999999753
No 386
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.28 E-value=0.0085 Score=72.06 Aligned_cols=126 Identities=20% Similarity=0.147 Sum_probs=71.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEE--------------------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 208 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~-------------------------------------- 208 (791)
..|+|||..++||||.+++|.|+.....+. .-+|+++....
T Consensus 30 P~I~vvG~QSsGKSSvLE~lvG~~flpRg~-givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~ 108 (657)
T KOG0446|consen 30 PQIVVVGGQSSGKSSVLESLVGFVFLPRGV-GIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETD 108 (657)
T ss_pred CceEEecCCCCcchhHHHHhhccccccccc-cceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhhHH
Confidence 589999999999999999999976544322 12333211110
Q ss_pred ---------------e---EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhc--CCCCEEEEEEeccCccCCCC
Q 003857 209 ---------------G---SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR--SPPDIVLYFERLDLISMGFS 268 (791)
Q Consensus 209 ---------------~---~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~--~~~dvVLlV~~ld~~t~~~~ 268 (791)
. .-.-.++++||.||+-.....++ .+.+..+++..+.. ..++++++.+..... +..
T Consensus 109 ~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dq--p~di~~qI~~mi~~yi~~~~~iILav~~an~--d~a 184 (657)
T KOG0446|consen 109 RITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQ--PDDIEEEIKSMIEEYIEKPNRIILAVTPANS--DIA 184 (657)
T ss_pred HhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCC--CccHHHHHHHHHHHhccccchhhhhccchhh--hhh
Confidence 0 00113578999999987644332 23333444433221 356777665322211 111
Q ss_pred cHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 269 DFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 269 D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.-+.++..+++- .-+..++-|+||.|+.+
T Consensus 185 ts~alkiarevD--p~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 185 TSPALVVAREVD--PGGSRTLEVITKFDFMD 213 (657)
T ss_pred cCHHHHHHHhhC--CCccchhHHhhhHHhhh
Confidence 124455555542 12478999999999884
No 387
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.28 E-value=0.064 Score=61.53 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=64.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--------------cCCCCceeEEEEEEeEE-----CCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--------------DAFQPATDCIREVKGSV-----NGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--------------s~~~~~Tt~~~~~~~~~-----~G~~l~LIDTPGl~d~ 227 (791)
-+..|+..---|||||...|+....... ..-.+.|-..+.+.... ..+.+.||||||--|.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 3677888899999999999964221110 11123444433333322 2368899999999876
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
+- ++.+++..| ...|+|++++.- .+-+++...--.+. ...-+|.|+||+|+...
T Consensus 90 sY-------EVSRSLAAC------EGalLvVDAsQG----veAQTlAN~YlAle--~~LeIiPViNKIDLP~A 143 (603)
T COG0481 90 SY-------EVSRSLAAC------EGALLVVDASQG----VEAQTLANVYLALE--NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred EE-------EehhhHhhC------CCcEEEEECccc----hHHHHHHHHHHHHH--cCcEEEEeeecccCCCC
Confidence 32 223444432 345555333211 12233333322322 23678999999998743
No 388
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.21 E-value=0.021 Score=60.98 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=64.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
++-++|-|.+||||+++.|.|.... +.++..+|-..........|-++.+.|.||+.+..-.+.-+...++.. .+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav-ar--- 135 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV-AR--- 135 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-ee---
Confidence 8999999999999999999996533 333434444444455566789999999999987643321122222111 11
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 281 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg 281 (791)
..++++.| +|.... .....+++.=.+-||
T Consensus 136 --tcnli~~v--ld~~kp-~~hk~~ie~eleg~g 164 (358)
T KOG1487|consen 136 --TCNLIFIV--LDVLKP-LSHKKIIEKELEGFG 164 (358)
T ss_pred --cccEEEEE--eeccCc-ccHHHHHHHhhhcce
Confidence 23788888 443321 234456655555555
No 389
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.20 E-value=0.015 Score=59.88 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=35.1
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCC
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTP 222 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTP 222 (791)
...+..|+|+|++|+||||+++.|..... ...-..+.||+..+. ++.+|..+.+++..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~-~e~~g~~y~fv~~~ 67 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRP-GEIDGVDYHFVTPE 67 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCC-CCCCCCeeeeCCHH
Confidence 34557889999999999999999975432 222122344443221 24455555555443
No 390
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.15 E-value=0.11 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...+|.|--|+|||||||.|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 35778899999999999999743
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.11 E-value=0.013 Score=59.93 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
+++|+|++|+|||||+|-|.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 899999999999999999998653
No 392
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.09 E-value=0.016 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
+|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 393
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.11 Score=62.41 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=68.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCC---------------CceeEEEEEEeEECCeEEEEEeCCCCCCccccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ---------------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~---------------~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~ 231 (791)
-+|.++..---|||||+.+|+..+..+..... +.|-....+.....+..+.|||+||--|...
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s-- 87 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS-- 87 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh--
Confidence 58999999999999999999876654443221 2233333444566789999999999987631
Q ss_pred hhhhHHHHHHHHHHHhcCCCC-EEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPD-IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~d-vVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++ .+..+ + + | .+++|+-+.+... ++...++...-. +...|+|+||+|.+
T Consensus 88 -----ev-ssas~-l--~--d~alvlvdvvegv~~-----qt~~vlrq~~~~--~~~~~lvinkidrl 137 (887)
T KOG0467|consen 88 -----EV-SSASR-L--S--DGALVLVDVVEGVCS-----QTYAVLRQAWIE--GLKPILVINKIDRL 137 (887)
T ss_pred -----hh-hhhhh-h--c--CCcEEEEeeccccch-----hHHHHHHHHHHc--cCceEEEEehhhhH
Confidence 11 11111 2 2 4 3455544555442 233333333211 25678899999954
No 394
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.95 E-value=0.031 Score=62.55 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=66.4
Q ss_pred CCCceEEEEEeecCCchHHHHhHhh-CCC-------c-----ccccCCCCceeEEEE-EEe-------------------
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIF-DQT-------K-----TETDAFQPATDCIRE-VKG------------------- 209 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLl-G~~-------~-----a~vs~~~~~Tt~~~~-~~~------------------- 209 (791)
....+.|.+.|.-+.||||++.+|. |+. + ..+.-..+-|.++.. +.+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4556899999999999999999884 211 0 000000111222111 110
Q ss_pred ---EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cc
Q 003857 210 ---SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AI 284 (791)
Q Consensus 210 ---~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i 284 (791)
.-.++-+.|+||-|-. ......|+. +-..++|-.++|+.+|.--. +.-++.+|- .+
T Consensus 194 ~vv~~aDklVsfVDtvGHE----------pwLrTtirG-L~gqk~dYglLvVaAddG~~--------~~tkEHLgi~~a~ 254 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHE----------PWLRTTIRG-LLGQKVDYGLLVVAADDGVT--------KMTKEHLGIALAM 254 (527)
T ss_pred HhhhhcccEEEEEecCCcc----------HHHHHHHHH-HhccccceEEEEEEccCCcc--------hhhhHhhhhhhhh
Confidence 1123457899999873 222233444 33357899999976654211 111222221 23
Q ss_pred cccEEEEEeccCCCCC
Q 003857 285 WFNTILVMTHSSSTLP 300 (791)
Q Consensus 285 ~k~vIVVLTK~D~l~p 300 (791)
..|+|+|+||+|..+.
T Consensus 255 ~lPviVvvTK~D~~~d 270 (527)
T COG5258 255 ELPVIVVVTKIDMVPD 270 (527)
T ss_pred cCCEEEEEEecccCcH
Confidence 5899999999999853
No 395
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.015 Score=61.75 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a 192 (791)
-|+|+|++|+|||||+|.|.|-...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999986544
No 396
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.86 E-value=0.023 Score=65.27 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=50.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCc------eeEEEEEEeEECC--eEEEEE-----eCCCCCCccccchh
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA------TDCIREVKGSVNG--IKVTFI-----DTPGFLPSCVRNVK 233 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~------Tt~~~~~~~~~~G--~~l~LI-----DTPGl~d~~~~~~~ 233 (791)
-+++|+|.+|+||||++|.|.+.....+..+... +++... ..+.+ .+-++| |+||.....
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~--~~l~~~l~~tvvV~atsddsp~~R~~~----- 230 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIE--KNLGGDLENTVIVVATSDDSPLMRKYG----- 230 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHH--HHhcCcccceEEEEECCCCCHHHhhHH-----
Confidence 4899999999999999999986543222111110 011000 01122 245677 888886431
Q ss_pred hhHHHHHHHHHHHhcCCCCEEEEEEeccCc
Q 003857 234 RNRKIMLSVKKFIRRSPPDIVLYFERLDLI 263 (791)
Q Consensus 234 ~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~ 263 (791)
.....++..++...+-|++|+++++..+
T Consensus 231 --~~~a~~iAEyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 231 --AFCAMSVAEYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred --HHHHHHHHHHHHHcCCCEEEecccchHH
Confidence 2223455566665677888877665544
No 397
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.05 Score=54.22 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=17.3
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
++.+.+|.+||||||++-.-.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT 30 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT 30 (219)
T ss_pred HHHHhhccCCCCceEEEEEec
Confidence 577889999999999875544
No 398
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.76 E-value=0.022 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..|+|+|++|+||||+++.|.+..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998864
No 399
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.75 E-value=0.08 Score=56.51 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=21.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-+++|-|..|+||||++.+|+.+
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 400
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.42 Score=53.20 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..|.++|.-|+||||++|.|.+..
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 589999999999999999998753
No 401
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.14 Score=51.00 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
=.++|+|++|+|||||++.|.|...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999653
No 402
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.61 E-value=0.16 Score=54.15 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=16.3
Q ss_pred EEEEEeecCCchHHHHhHh
Q 003857 168 RILVLGKTGVGKSATINSI 186 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsL 186 (791)
+|+|.|+.||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 6889999999999977655
No 403
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.57 E-value=0.19 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..++|+|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998653
No 404
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.53 E-value=0.022 Score=60.09 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a 192 (791)
-|+|+|++|+|||||+|.|-|-...
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 7999999999999999999875543
No 405
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.44 E-value=0.025 Score=57.29 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..|+|+|++|+|||||+++|++.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999753
No 406
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.42 E-value=0.03 Score=47.52 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=17.7
Q ss_pred EEEEEeecCCchHHHHhHh
Q 003857 168 RILVLGKTGVGKSATINSI 186 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsL 186 (791)
..+|.|++|+||||++.+|
T Consensus 25 ~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999887
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.33 E-value=0.22 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.221 Sum_probs=20.1
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-+++|+|++|+||||++..|.+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4899999999999999999973
No 408
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.037 Score=62.16 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=69.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc-----ccC------------CCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE-----TDA------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~-----vs~------------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
-+|.|+..-.+||||+-..|+--..++ |+. -.+.|-....+...|+|.++.+|||||--|...
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 488999999999999998885221111 111 123445566677889999999999999987643
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. +.+|++. .|.++.|++.++--. .....+++. ... ...|.++.+||+|.+.
T Consensus 118 e-----------verclrv--ldgavav~dasagve-~qtltvwrq-adk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 E-----------VERCLRV--LDGAVAVFDASAGVE-AQTLTVWRQ-ADK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred E-----------HHHHHHH--hcCeEEEEeccCCcc-cceeeeehh-ccc----cCCchhhhhhhhhhhh
Confidence 2 2334322 266677744443211 111122222 122 2478888899999873
No 409
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.27 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=20.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
.++|.|-|+|||||||++-+|..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 48999999999999999988863
No 410
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.23 E-value=0.03 Score=57.24 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999964
No 411
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.23 E-value=0.11 Score=57.35 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=65.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc-----------CCC-CceeEEEE------E----EeEEC------CeEE
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD-----------AFQ-PATDCIRE------V----KGSVN------GIKV 216 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-----------~~~-~~Tt~~~~------~----~~~~~------G~~l 216 (791)
...+|-+||.---||||+..+|.|--....+ .+. ..-.+|.. + .+... -+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4589999999999999999999773111100 000 00011100 0 01111 1578
Q ss_pred EEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccC
Q 003857 217 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 296 (791)
Q Consensus 217 ~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D 296 (791)
.|+|.||-. -.+..+..-. .=-|..|+|+..+......+-.+-+-.| ++.| -+++|+|-||.|
T Consensus 89 SfVDaPGHe-----------~LMATMLsGA--AlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig---ik~iiIvQNKID 151 (415)
T COG5257 89 SFVDAPGHE-----------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTREHLMAL-EIIG---IKNIIIVQNKID 151 (415)
T ss_pred EEeeCCchH-----------HHHHHHhcch--hhhcceEEEEecCCCCCCCchHHHHHHH-hhhc---cceEEEEecccc
Confidence 999999982 2222221100 1137888887776654333333322222 2223 279999999999
Q ss_pred CCCC
Q 003857 297 STLP 300 (791)
Q Consensus 297 ~l~p 300 (791)
+...
T Consensus 152 lV~~ 155 (415)
T COG5257 152 LVSR 155 (415)
T ss_pred eecH
Confidence 9853
No 412
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.21 E-value=0.04 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=22.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a 192 (791)
=.+.|+|++|||||||+++|+|--..
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 37999999999999999999996544
No 413
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.032 Score=58.21 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 414
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=94.13 E-value=0.13 Score=57.40 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=66.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC------Ccccc------cCCCCceeEEEEEE----------------------eEE
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ------TKTET------DAFQPATDCIREVK----------------------GSV 211 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~------~~a~v------s~~~~~Tt~~~~~~----------------------~~~ 211 (791)
.++++++|---+|||||+..|... -++.. ..+.++-+.+.... .+-
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 579999999999999999988521 11111 11222222111110 111
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
..+-+++||.+|-... ....+.. +....||..++|+.++.-- .-.-++-+-.+... ..|.+++
T Consensus 247 SSKlvTfiDLAGh~kY-------~~TTi~g----LtgY~Ph~A~LvVsA~~Gi-~~tTrEHLgl~~AL-----~iPfFvl 309 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKY-------QKTTIHG----LTGYTPHFACLVVSADRGI-TWTTREHLGLIAAL-----NIPFFVL 309 (591)
T ss_pred hcceEEEeecccchhh-------heeeeee----cccCCCceEEEEEEcCCCC-ccccHHHHHHHHHh-----CCCeEEE
Confidence 2345889999987422 1111122 2223689998886665321 11122333333332 4799999
Q ss_pred EeccCCCCCCC
Q 003857 292 MTHSSSTLPEG 302 (791)
Q Consensus 292 LTK~D~l~pd~ 302 (791)
+||.|+..+.+
T Consensus 310 vtK~Dl~~~~~ 320 (591)
T KOG1143|consen 310 VTKMDLVDRQG 320 (591)
T ss_pred EEeeccccchh
Confidence 99999986543
No 415
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.12 E-value=0.034 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.|+++|+||+||||++..|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999743
No 416
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.08 E-value=0.14 Score=56.89 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=62.2
Q ss_pred EEEEEeecCCchHHHHhHhhCC----Cccc-ccCC-----C------CceeEEEEE-----EeE---------------E
Q 003857 168 RILVLGKTGVGKSATINSIFDQ----TKTE-TDAF-----Q------PATDCIREV-----KGS---------------V 211 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~----~~a~-vs~~-----~------~~Tt~~~~~-----~~~---------------~ 211 (791)
..+|-|-=|+||||++|.|+.+ +.+. ++.+ . .+..++.+. .++ .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 4667799999999999999743 2221 1111 1 111111111 111 2
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHH--HH-hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK--FI-RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk--~l-~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
.+.+.+||-|-|+.++ ..+...+.. .+ .....|.++-|++...... .+..+.+.+-..+..--
T Consensus 83 ~~~D~ivIEtTGlA~P--------~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~------~~~~~~~~~~~Qia~AD 148 (323)
T COG0523 83 DRPDRLVIETTGLADP--------APVIQTFLTDPELADGVRLDGVVTVVDAAHFLE------GLDAIAELAEDQLAFAD 148 (323)
T ss_pred CCCCEEEEeCCCCCCC--------HHHHHHhccccccccceeeceEEEEEeHHHhhh------hHHHHHHHHHHHHHhCc
Confidence 3467899999999876 122222221 11 1124566777744443321 11112222222333456
Q ss_pred EEEEeccCCCCC
Q 003857 289 ILVMTHSSSTLP 300 (791)
Q Consensus 289 IVVLTK~D~l~p 300 (791)
+||+||.|+..+
T Consensus 149 ~ivlNK~Dlv~~ 160 (323)
T COG0523 149 VIVLNKTDLVDA 160 (323)
T ss_pred EEEEecccCCCH
Confidence 889999999853
No 417
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.05 E-value=0.14 Score=52.72 Aligned_cols=19 Identities=42% Similarity=0.763 Sum_probs=16.0
Q ss_pred EEEEEeecCCchHHHHhHh
Q 003857 168 RILVLGKTGVGKSATINSI 186 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsL 186 (791)
.|+|+|+.||||||+.-.|
T Consensus 2 ~iav~gKGGvGKTt~~~nL 20 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNL 20 (212)
T ss_pred EEEEECCCcCcHHHHHHHH
Confidence 5889999999999976555
No 418
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.03 E-value=0.15 Score=65.82 Aligned_cols=21 Identities=38% Similarity=0.765 Sum_probs=20.2
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
+|.|||+||+||||++++||.
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFR 1188 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFR 1188 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999984
No 419
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.01 E-value=0.038 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..++|+|++|+||||++..|+..-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 479999999999999999998653
No 420
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.036 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 421
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.96 E-value=0.31 Score=47.03 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=53.1
Q ss_pred EEEeecCCchHHHHhHhhC------CCccccc-CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 170 LVLGKTGVGKSATINSIFD------QTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 170 lLVGktGvGKSTLINsLlG------~~~a~vs-~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
+.-|+.|+||||+--.|.. .....++ +...... ..+++|||||+..+. .....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~---------~~~~~- 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISD---------NVLDF- 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCH---------HHHHH-
Confidence 3458999999998655532 2222221 1111111 178899999986422 11122
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 296 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D 296 (791)
+ ...|.+++|...+..+.. .-..+++.+.+..+ ..+..+|+|+++
T Consensus 64 ---l--~~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~~---~~~~~lVvN~~~ 108 (139)
T cd02038 64 ---F--LAADEVIVVTTPEPTSIT-DAYALIKKLAKQLR---VLNFRVVVNRAE 108 (139)
T ss_pred ---H--HhCCeEEEEcCCChhHHH-HHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 2 124899999655544321 11234455544321 357789999986
No 422
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.46 Score=51.93 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=68.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC------Ccc-c--------ccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ------TKT-E--------TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~------~~a-~--------vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
...+|..+|.-+-|||||..+|.+. ..+ . .....+.|-....+..+...+.+-.+|.||-.|.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY-- 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY-- 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH--
Confidence 3489999999999999999999531 101 1 1112234555666677778889999999999643
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l-d~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+ .-|... ...|.-++|+.. |+....-.+.-+ +.+..|. ..+++.+||+|...
T Consensus 89 -----vK---NMItgA---aqmDgAILVVsA~dGpmPqTrEHiL---larqvGv---p~ivvflnK~Dmvd 142 (394)
T COG0050 89 -----VK---NMITGA---AQMDGAILVVAATDGPMPQTREHIL---LARQVGV---PYIVVFLNKVDMVD 142 (394)
T ss_pred -----HH---HHhhhH---HhcCccEEEEEcCCCCCCcchhhhh---hhhhcCC---cEEEEEEecccccC
Confidence 11 112211 134666666433 433221111111 2233231 47788999999984
No 423
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.94 E-value=0.038 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 89999999999999999999964
No 424
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.93 E-value=0.038 Score=56.67 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 425
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.88 E-value=0.039 Score=56.73 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999964
No 426
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.85 E-value=0.04 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 427
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.85 E-value=0.04 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 428
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=93.84 E-value=0.042 Score=53.29 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=60.2
Q ss_pred EEEeecCCchHHHHhHhhCCCcccccCCCCcee--EEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 170 LVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 170 lLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt--~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+++|.+++|||-|+=..- ...+..+.+ -.|. +........++ +++.++||+|-.. .......+
T Consensus 1 mllgds~~gktcllir~k-dgafl~~~f-istvgid~rnkli~~~~~kvklqiwdtagqer-----------frsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFK-DGAFLAGNF-ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQER-----------FRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEec-cCceecCce-eeeeeeccccceeccCCcEEEEEEeeccchHH-----------HhhhhHhh
Confidence 578999999998753221 111222222 1111 12222233444 4788999999731 11112222
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ..+|.+|++.++.....-.+-+..+..|.+.-.. ...+.++-||+|+.+
T Consensus 68 y--rda~allllydiankasfdn~~~wlsei~ey~k~--~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 68 Y--RDADALLLLYDIANKASFDNCQAWLSEIHEYAKE--AVALMLLGNKCDLAH 117 (192)
T ss_pred h--cccceeeeeeecccchhHHHHHHHHHHHHHHHHh--hHhHhhhccccccch
Confidence 3 2468888886665443222233455566554222 245678899999974
No 429
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.83 E-value=0.34 Score=47.52 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=54.1
Q ss_pred EEEeecCCchHHHHhHhh------CCCccccc-CCC-CceeEE---E-----EEEeEECCeEEEEEeCCCCCCccccchh
Q 003857 170 LVLGKTGVGKSATINSIF------DQTKTETD-AFQ-PATDCI---R-----EVKGSVNGIKVTFIDTPGFLPSCVRNVK 233 (791)
Q Consensus 170 lLVGktGvGKSTLINsLl------G~~~a~vs-~~~-~~Tt~~---~-----~~~~~~~G~~l~LIDTPGl~d~~~~~~~ 233 (791)
++-++.|+||||+.-.|. |.++..++ +.. +..... . .....+.+ +++|||||+-.+.
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-d~viiD~p~~~~~------ 76 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAG-DYILIDSPAGIER------ 76 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccC-CEEEEECCCCCcH------
Confidence 344689999999887773 44444442 111 111110 0 00001111 7999999986422
Q ss_pred hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 234 RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 234 ~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..... + ...|.+++|...+..... .-..+++.+... + .....+|+|+++..
T Consensus 77 ---~~~~~----l--~~ad~viiv~~~~~~s~~-~~~~~~~~~~~~-~---~~~~~iv~N~~~~~ 127 (179)
T cd02036 77 ---GFITA----I--APADEALLVTTPEISSLR-DADRVKGLLEAL-G---IKVVGVIVNRVRPD 127 (179)
T ss_pred ---HHHHH----H--HhCCcEEEEeCCCcchHH-HHHHHHHHHHHc-C---CceEEEEEeCCccc
Confidence 11122 2 235888888655543321 111333343331 1 24567899998754
No 430
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.14 Score=58.59 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEeecCCchHHHHhHhhCCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~ 190 (791)
-++.||||+||||+|.+|++.=
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc
Confidence 6889999999999999999853
No 431
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.041 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 432
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.79 E-value=0.04 Score=55.85 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|+|++|+|||||+|.|++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999999999974
No 433
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.79 E-value=0.041 Score=56.13 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999964
No 434
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.79 E-value=0.33 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.4
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
-.++|.|++|+||||+++.|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 578999999999999999986
No 435
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.76 E-value=0.042 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999864
No 436
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.76 E-value=0.04 Score=57.05 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999964
No 437
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.039 Score=56.51 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 438
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.043 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 439
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.71 E-value=0.037 Score=56.77 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.1
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
-|+|+|+||+||||++++|++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 440
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.67 E-value=0.04 Score=61.38 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCCc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
-++|+||+|+|||||++.|.|-+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999999653
No 441
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.66 E-value=0.045 Score=55.24 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.|+|+|++|+||||+++.|.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999998753
No 442
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.045 Score=56.93 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
=.++|+|++|+|||||++.|+|...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999999653
No 443
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.65 E-value=0.045 Score=57.24 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 89999999999999999999864
No 444
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.64 E-value=0.045 Score=56.31 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 445
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.60 E-value=0.047 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999964
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.047 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999964
No 447
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.59 E-value=0.047 Score=56.23 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999974
No 448
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.59 E-value=0.047 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 449
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.57 E-value=0.069 Score=56.52 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=22.3
Q ss_pred eEEEEEeecCCchHHHHhHh------hCCCcccc
Q 003857 167 IRILVLGKTGVGKSATINSI------FDQTKTET 194 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsL------lG~~~a~v 194 (791)
+-.+|+|+||+||||..|.+ .|+....|
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV 36 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV 36 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEE
Confidence 34689999999999999887 46666655
No 450
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.56 E-value=0.31 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-+|+|||+.|||||||+..|+|.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 39999999999999999999885
No 451
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.52 E-value=0.048 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999964
No 452
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.49 E-value=0.052 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999974
No 453
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.49 E-value=0.18 Score=59.73 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-+++|+|++|+||||+++.|+|.-
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 388999999999999999999865
No 454
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.48 E-value=0.05 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999964
No 455
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.47 E-value=0.05 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999964
No 456
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.47 E-value=0.05 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 457
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.44 E-value=0.049 Score=60.93 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+|+|+|+||+|||||+|+|++.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc
Confidence 69999999999999999999975
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.44 E-value=0.054 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...|+|+|++|+|||||++.|.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 459
>PRK07261 topology modulation protein; Provisional
Probab=93.43 E-value=0.051 Score=54.49 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
+|+|+|.+|+||||+...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 460
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.052 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.40 E-value=0.056 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEeecCCchHHHHhHhhCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~ 189 (791)
|+|.|.+||||||+.+.|..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 462
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.40 E-value=0.052 Score=56.66 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999996
No 463
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.38 E-value=0.05 Score=57.34 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=21.0
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+|||||++.|+|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999985
No 464
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.38 E-value=0.053 Score=56.55 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 465
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.37 E-value=0.054 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999964
No 466
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.35 E-value=0.055 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999964
No 467
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.35 E-value=0.042 Score=55.46 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=32.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEe
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFID 220 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LID 220 (791)
.-|+|+|++||||+|+++.|............+.|++..+ .++..|....+++
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r-~~e~~g~dy~fvs 55 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPR-PGEVNGVDYHFVS 55 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCC-CCCcCCceEEECC
Confidence 3589999999999999999987752112222344554332 2334455555543
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.34 E-value=0.05 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.|+|+|++||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 469
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.32 E-value=0.055 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999964
No 470
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.31 E-value=0.056 Score=55.36 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999964
No 471
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.31 E-value=0.42 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|.|++|+||||++..|.+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999977
No 472
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.30 E-value=0.057 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
-.++|+|++|+|||||++.|+|...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3889999999999999999998643
No 473
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.30 E-value=0.055 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
-.++|+|++|+|||||++.|+|...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999999653
No 474
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.27 E-value=0.057 Score=55.38 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
=.++|+|++|+|||||++.|+|...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3899999999999999999999653
No 475
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.26 E-value=0.056 Score=56.26 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
No 476
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.25 E-value=0.058 Score=55.06 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999965
No 477
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.23 E-value=0.058 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999964
No 478
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.058 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 79999999999999999999975
No 479
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.23 E-value=0.058 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 389999999999999999999964
No 480
>PRK10908 cell division protein FtsE; Provisional
Probab=93.23 E-value=0.058 Score=55.73 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999965
No 481
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.22 E-value=0.013 Score=58.88 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
-|+|+|++|+||||+.+.|+..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999999764
No 482
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.19 E-value=0.34 Score=49.92 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.++|+|++|+|||||++.|.+
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 678999999999999999976
No 483
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.19 E-value=0.058 Score=56.18 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
=.++|+|++|+|||||++.|+|...
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999999753
No 484
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.19 E-value=0.059 Score=56.67 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 485
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.059 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.17 E-value=0.063 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+..|+|.|++|+|||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999864
No 487
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.059 Score=56.73 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999999964
No 488
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.12 E-value=0.062 Score=54.75 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999964
No 489
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.061 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999974
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.10 E-value=0.067 Score=53.75 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
-.++|+|++|+|||||++.|.|...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999754
No 491
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.09 E-value=0.06 Score=57.06 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 389999999999999999999964
No 492
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.09 E-value=0.062 Score=56.28 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 493
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=93.08 E-value=0.66 Score=41.86 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=38.1
Q ss_pred EEEEe-ecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 169 ILVLG-KTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 169 IlLVG-ktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
|+|+| +.|+||||+.-.|...- +..+ .++....... ..+++|||||+.... ..... +
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~------~~vl~~d~d~-~~d~viiD~p~~~~~---------~~~~~----l- 59 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRG------KRVLLIDLDP-QYDYIIIDTPPSLGL---------LTRNA----L- 59 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCC------CcEEEEeCCC-CCCEEEEeCcCCCCH---------HHHHH----H-
Confidence 56776 78999999876664211 0000 0111111110 167899999998532 11112 2
Q ss_pred cCCCCEEEEEEeccCc
Q 003857 248 RSPPDIVLYFERLDLI 263 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~ 263 (791)
...|.+++++..+..
T Consensus 60 -~~ad~viv~~~~~~~ 74 (104)
T cd02042 60 -AAADLVLIPVQPSPL 74 (104)
T ss_pred -HHCCEEEEeccCCHH
Confidence 124888888555443
No 494
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.08 E-value=0.064 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=22.0
Q ss_pred EEEEEeecCCchHHHHhHhhCCCc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
.++|+|++|+|||||++.|.|...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999999643
No 495
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.07 E-value=0.063 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999965
No 496
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.07 E-value=0.065 Score=55.91 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 389999999999999999999974
No 497
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.04 E-value=0.064 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=22.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999964
No 498
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.063 Score=56.53 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 389999999999999999999853
No 499
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.064 Score=56.48 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.9
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+|||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999985
No 500
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.00 E-value=0.068 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999964
Done!