Query 003857
Match_columns 791
No_of_seqs 451 out of 3466
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 99.9 1.8E-24 6.1E-29 226.0 14.8 214 165-388 35-253 (262)
2 1h65_A Chloroplast outer envel 99.9 1E-22 3.6E-27 213.3 16.9 213 166-388 39-255 (270)
3 3lxx_A GTPase IMAP family memb 99.7 4.2E-17 1.4E-21 167.0 14.0 157 162-331 25-184 (239)
4 3lxw_A GTPase IMAP family memb 99.7 6.3E-16 2.2E-20 160.4 15.3 154 165-331 20-178 (247)
5 3gee_A MNME, tRNA modification 99.6 2.1E-15 7E-20 171.4 14.0 184 91-299 169-357 (476)
6 2xtp_A GTPase IMAP family memb 99.6 2.4E-14 8.3E-19 148.1 14.3 151 164-328 20-175 (260)
7 3t5d_A Septin-7; GTP-binding p 99.5 2.3E-14 7.8E-19 150.4 12.9 129 164-299 6-158 (274)
8 3geh_A MNME, tRNA modification 99.5 1.2E-14 4E-19 164.6 7.7 183 90-300 160-345 (462)
9 1xzp_A Probable tRNA modificat 99.5 3.2E-14 1.1E-18 161.8 9.3 180 92-299 182-364 (482)
10 4dhe_A Probable GTP-binding pr 99.5 1.1E-13 3.8E-18 138.4 11.1 129 164-299 27-158 (223)
11 1wf3_A GTP-binding protein; GT 99.4 4.4E-13 1.5E-17 143.5 13.8 124 166-298 7-130 (301)
12 3iev_A GTP-binding protein ERA 99.4 3.7E-13 1.3E-17 144.1 12.0 127 163-298 7-135 (308)
13 2gj8_A MNME, tRNA modification 99.4 1.4E-12 4.9E-17 126.5 13.7 125 166-298 4-128 (172)
14 1svi_A GTP-binding protein YSX 99.4 1.5E-12 5.3E-17 126.9 11.7 125 165-299 22-148 (195)
15 3pqc_A Probable GTP-binding pr 99.4 2.8E-12 9.5E-17 124.4 12.7 126 164-299 21-147 (195)
16 1mky_A Probable GTP-binding pr 99.4 1.9E-12 6.4E-17 145.1 13.0 122 167-298 2-123 (439)
17 2dyk_A GTP-binding protein; GT 99.4 3.2E-12 1.1E-16 120.1 12.4 121 167-299 2-122 (161)
18 2qu8_A Putative nucleolar GTP- 99.4 9.3E-12 3.2E-16 126.0 16.4 131 164-300 27-157 (228)
19 3i8s_A Ferrous iron transport 99.4 2.8E-12 9.5E-17 135.0 12.9 122 166-299 3-126 (274)
20 3iby_A Ferrous iron transport 99.3 3.7E-12 1.2E-16 133.1 11.6 121 167-299 2-124 (256)
21 3a1s_A Iron(II) transport prot 99.3 1.9E-11 6.5E-16 127.8 14.2 121 165-299 4-124 (258)
22 3qq5_A Small GTP-binding prote 99.3 4.1E-12 1.4E-16 142.3 9.3 196 163-373 31-246 (423)
23 2g6b_A RAS-related protein RAB 99.3 1.6E-11 5.4E-16 117.7 12.0 122 163-299 7-130 (180)
24 3k53_A Ferrous iron transport 99.3 1.8E-11 6.1E-16 128.0 13.2 120 166-299 3-123 (271)
25 2hjg_A GTP-binding protein ENG 99.3 4E-12 1.4E-16 142.3 8.4 127 164-299 173-300 (436)
26 1jwy_B Dynamin A GTPase domain 99.3 4E-11 1.4E-15 127.0 15.2 128 166-300 24-213 (315)
27 4a9a_A Ribosome-interacting GT 99.3 2.3E-11 7.8E-16 134.3 13.5 123 166-298 72-195 (376)
28 2erx_A GTP-binding protein DI- 99.3 2.7E-11 9.2E-16 114.6 12.0 119 166-299 3-123 (172)
29 3tkl_A RAS-related protein RAB 99.3 2.2E-11 7.6E-16 118.5 11.5 121 164-300 14-136 (196)
30 2hjg_A GTP-binding protein ENG 99.2 3.5E-12 1.2E-16 142.8 6.2 122 167-299 4-125 (436)
31 4dcu_A GTP-binding protein ENG 99.2 3.4E-12 1.2E-16 143.7 6.0 122 167-299 24-145 (456)
32 1ega_A Protein (GTP-binding pr 99.2 1.3E-11 4.3E-16 131.9 10.0 119 166-298 8-129 (301)
33 2e87_A Hypothetical protein PH 99.2 1.5E-10 5.2E-15 126.1 18.5 127 164-298 165-293 (357)
34 2wjg_A FEOB, ferrous iron tran 99.2 5.1E-11 1.7E-15 115.4 13.2 120 165-298 6-125 (188)
35 2bme_A RAB4A, RAS-related prot 99.2 3.3E-11 1.1E-15 116.3 11.5 119 164-298 8-128 (186)
36 4dcu_A GTP-binding protein ENG 99.2 9.6E-12 3.3E-16 140.0 8.9 128 163-299 192-320 (456)
37 3tw8_B RAS-related protein RAB 99.2 1.2E-11 4.1E-16 118.2 7.8 119 164-299 7-127 (181)
38 1ksh_A ARF-like protein 2; sma 99.2 8.4E-11 2.9E-15 113.9 13.8 115 165-299 17-133 (186)
39 2wji_A Ferrous iron transport 99.2 4.2E-11 1.4E-15 114.8 11.5 119 166-298 3-121 (165)
40 1ek0_A Protein (GTP-binding pr 99.2 1.4E-11 4.8E-16 116.3 7.8 119 166-300 3-123 (170)
41 1z0j_A RAB-22, RAS-related pro 99.2 1.5E-11 5.2E-16 116.3 7.9 120 165-299 5-125 (170)
42 1z0f_A RAB14, member RAS oncog 99.2 2.5E-11 8.4E-16 115.8 9.2 119 164-299 13-134 (179)
43 2gf0_A GTP-binding protein DI- 99.2 6.6E-11 2.3E-15 115.4 12.0 121 164-299 6-128 (199)
44 2nzj_A GTP-binding protein REM 99.2 3.9E-11 1.3E-15 114.2 10.2 121 165-299 3-125 (175)
45 2aka_B Dynamin-1; fusion prote 99.2 1.2E-10 4.2E-15 122.0 14.8 29 164-192 24-52 (299)
46 2y8e_A RAB-protein 6, GH09086P 99.2 3.1E-11 1.1E-15 115.1 9.4 119 165-299 13-133 (179)
47 1upt_A ARL1, ADP-ribosylation 99.2 8.4E-11 2.9E-15 111.5 12.3 116 164-299 5-122 (171)
48 1z06_A RAS-related protein RAB 99.2 8.6E-11 3E-15 114.5 12.7 122 164-299 18-141 (189)
49 3q72_A GTP-binding protein RAD 99.2 2.7E-11 9.3E-16 114.6 8.8 120 166-300 2-121 (166)
50 1zbd_A Rabphilin-3A; G protein 99.2 3.7E-11 1.3E-15 118.2 10.1 120 164-299 6-127 (203)
51 1kao_A RAP2A; GTP-binding prot 99.2 4.9E-11 1.7E-15 111.9 10.2 118 166-299 3-122 (167)
52 3bc1_A RAS-related protein RAB 99.2 7.8E-11 2.7E-15 113.6 11.9 121 164-299 9-141 (195)
53 3clv_A RAB5 protein, putative; 99.2 3.8E-11 1.3E-15 116.3 9.7 114 164-296 5-158 (208)
54 2cxx_A Probable GTP-binding pr 99.2 7.7E-11 2.6E-15 113.9 11.8 122 167-298 2-135 (190)
55 3cph_A RAS-related protein SEC 99.2 3.3E-11 1.1E-15 119.1 9.3 119 164-298 18-138 (213)
56 4dsu_A GTPase KRAS, isoform 2B 99.2 4.1E-11 1.4E-15 115.5 9.7 118 165-298 3-122 (189)
57 2fg5_A RAB-22B, RAS-related pr 99.2 2.4E-11 8.3E-16 119.2 8.1 120 164-298 21-141 (192)
58 2efe_B Small GTP-binding prote 99.2 3.5E-11 1.2E-15 115.4 9.0 119 165-299 11-131 (181)
59 1wms_A RAB-9, RAB9, RAS-relate 99.2 9.7E-11 3.3E-15 111.9 12.1 120 165-298 6-129 (177)
60 1zd9_A ADP-ribosylation factor 99.2 1.7E-10 5.7E-15 112.7 14.0 117 164-299 20-138 (188)
61 1u8z_A RAS-related protein RAL 99.2 5.6E-11 1.9E-15 111.6 10.1 118 166-299 4-123 (168)
62 1r2q_A RAS-related protein RAB 99.2 2.6E-11 9E-16 114.4 7.8 119 166-299 6-125 (170)
63 1g16_A RAS-related protein SEC 99.2 2.1E-11 7.1E-16 115.3 7.1 118 165-298 2-121 (170)
64 2oil_A CATX-8, RAS-related pro 99.2 3.4E-11 1.2E-15 117.5 8.7 122 162-299 21-144 (193)
65 2il1_A RAB12; G-protein, GDP, 99.2 1.1E-10 3.9E-15 114.5 12.3 121 163-299 23-145 (192)
66 2a9k_A RAS-related protein RAL 99.2 1.2E-10 4.2E-15 111.8 12.1 119 165-299 17-137 (187)
67 1c1y_A RAS-related protein RAP 99.2 7.3E-11 2.5E-15 111.3 10.2 118 166-299 3-122 (167)
68 4bas_A ADP-ribosylation factor 99.2 9.9E-11 3.4E-15 114.2 11.3 120 162-299 13-141 (199)
69 1z08_A RAS-related protein RAB 99.2 3.6E-11 1.2E-15 113.9 7.8 119 165-299 5-125 (170)
70 2j69_A Bacterial dynamin-like 99.2 2.8E-11 9.4E-16 143.4 8.6 117 167-299 70-244 (695)
71 2ce2_X GTPase HRAS; signaling 99.2 1E-10 3.4E-15 109.5 10.7 118 166-299 3-122 (166)
72 2bov_A RAla, RAS-related prote 99.2 2.1E-10 7.1E-15 112.5 13.3 120 164-299 12-133 (206)
73 3b1v_A Ferrous iron uptake tra 99.2 5.5E-11 1.9E-15 125.5 9.7 119 166-299 3-121 (272)
74 2h17_A ADP-ribosylation factor 99.2 1.4E-10 4.8E-15 112.4 11.9 116 164-299 19-136 (181)
75 2fn4_A P23, RAS-related protei 99.2 1.1E-10 3.9E-15 111.4 11.0 120 164-299 7-128 (181)
76 2h57_A ADP-ribosylation factor 99.2 6E-11 2E-15 115.8 9.1 117 165-299 20-140 (190)
77 2gf9_A RAS-related protein RAB 99.2 6.6E-11 2.3E-15 115.4 9.4 120 164-299 20-141 (189)
78 1r8s_A ADP-ribosylation factor 99.2 7.3E-11 2.5E-15 111.4 9.4 113 167-299 1-115 (164)
79 2yc2_C IFT27, small RAB-relate 99.2 2.8E-11 9.5E-16 118.7 6.5 122 165-299 19-146 (208)
80 1mky_A Probable GTP-binding pr 99.2 3.5E-11 1.2E-15 134.8 8.1 127 164-299 178-306 (439)
81 1z2a_A RAS-related protein RAB 99.1 5.9E-11 2E-15 112.0 8.5 118 165-299 4-123 (168)
82 3t5g_A GTP-binding protein RHE 99.1 1.5E-10 5.2E-15 111.4 11.4 119 165-299 5-125 (181)
83 2o52_A RAS-related protein RAB 99.1 6.2E-11 2.1E-15 117.3 8.8 120 163-298 22-143 (200)
84 4djt_A GTP-binding nuclear pro 99.1 4.5E-11 1.5E-15 119.1 7.9 121 164-299 9-131 (218)
85 1zj6_A ADP-ribosylation factor 99.1 3.3E-10 1.1E-14 110.2 13.8 114 166-299 16-131 (187)
86 2lkc_A Translation initiation 99.1 1.2E-10 4.2E-15 111.3 10.3 116 164-299 6-121 (178)
87 2x2e_A Dynamin-1; nitration, h 99.1 2.4E-10 8.2E-15 124.4 13.8 126 167-299 32-211 (353)
88 2a5j_A RAS-related protein RAB 99.1 6.9E-11 2.4E-15 115.6 8.4 120 164-299 19-140 (191)
89 3dz8_A RAS-related protein RAB 99.1 3.7E-11 1.3E-15 117.5 6.4 121 163-298 20-141 (191)
90 2qag_A Septin-2, protein NEDD5 99.1 3.9E-11 1.3E-15 131.5 7.2 129 165-299 36-188 (361)
91 2p5s_A RAS and EF-hand domain 99.1 1.1E-10 3.7E-15 115.1 9.6 117 165-298 27-146 (199)
92 2hup_A RAS-related protein RAB 99.1 2.2E-10 7.5E-15 113.6 11.8 120 163-299 26-148 (201)
93 2bcg_Y Protein YP2, GTP-bindin 99.1 8.9E-11 3E-15 116.0 8.9 120 164-299 6-127 (206)
94 2qtf_A Protein HFLX, GTP-bindi 99.1 2.2E-10 7.6E-15 125.8 12.9 125 168-299 181-306 (364)
95 3oes_A GTPase rhebl1; small GT 99.1 8.9E-11 3E-15 115.9 8.7 118 164-299 22-143 (201)
96 2ged_A SR-beta, signal recogni 99.1 6.6E-11 2.3E-15 115.3 7.7 118 165-300 47-171 (193)
97 3con_A GTPase NRAS; structural 99.1 1.3E-10 4.4E-15 112.9 9.7 119 165-299 20-140 (190)
98 1fzq_A ADP-ribosylation factor 99.1 8.5E-10 2.9E-14 107.4 15.5 115 165-299 15-131 (181)
99 3r7w_A Gtpase1, GTP-binding pr 99.1 1.7E-10 5.9E-15 123.2 11.5 123 166-298 3-128 (307)
100 3q85_A GTP-binding protein REM 99.1 2.4E-10 8.1E-15 108.4 11.0 119 166-298 2-122 (169)
101 1moz_A ARL1, ADP-ribosylation 99.1 8.9E-11 3E-15 113.0 8.0 115 165-299 17-133 (183)
102 3t34_A Dynamin-related protein 99.1 2.7E-10 9.2E-15 124.1 12.7 127 167-300 35-218 (360)
103 2fh5_B SR-beta, signal recogni 99.1 2.7E-10 9.1E-15 113.2 11.7 116 166-299 7-129 (214)
104 2fu5_C RAS-related protein RAB 99.1 6.4E-11 2.2E-15 114.2 6.9 120 164-299 6-127 (183)
105 1ky3_A GTP-binding protein YPT 99.1 1.2E-10 4.2E-15 111.2 8.9 120 165-298 7-131 (182)
106 1x3s_A RAS-related protein RAB 99.1 5.7E-11 1.9E-15 115.3 6.5 119 165-298 14-134 (195)
107 2qpt_A EH domain-containing pr 99.1 5.7E-11 2E-15 137.2 7.6 128 164-299 63-232 (550)
108 2hxs_A RAB-26, RAS-related pro 99.1 1.9E-10 6.4E-15 110.0 9.8 119 165-298 5-128 (178)
109 2b6h_A ADP-ribosylation factor 99.1 4.3E-10 1.5E-14 110.7 12.4 115 165-299 28-144 (192)
110 3kkq_A RAS-related protein M-R 99.1 5.8E-10 2E-14 107.5 12.9 120 164-299 16-137 (183)
111 2atv_A RERG, RAS-like estrogen 99.1 2.4E-10 8.4E-15 112.1 10.4 117 166-299 28-146 (196)
112 2ew1_A RAS-related protein RAB 99.1 3E-10 1E-14 113.4 11.1 119 164-298 24-144 (201)
113 3gj0_A GTP-binding nuclear pro 99.1 8E-11 2.8E-15 118.0 6.7 122 162-299 11-133 (221)
114 1vg8_A RAS-related protein RAB 99.1 1.5E-10 5E-15 113.9 8.3 120 165-298 7-130 (207)
115 2x77_A ADP-ribosylation factor 99.1 2.8E-10 9.7E-15 110.6 10.3 115 165-299 21-137 (189)
116 3reg_A RHO-like small GTPase; 99.1 2.2E-10 7.6E-15 112.1 8.9 117 164-299 21-141 (194)
117 3zvr_A Dynamin-1; hydrolase, D 99.1 9E-10 3.1E-14 131.1 15.2 127 167-301 52-233 (772)
118 3j2k_7 ERF3, eukaryotic polype 99.1 1.4E-09 4.7E-14 122.2 15.9 118 164-299 15-169 (439)
119 2f7s_A C25KG, RAS-related prot 99.1 4.5E-10 1.5E-14 111.8 10.6 119 163-299 22-155 (217)
120 2q3h_A RAS homolog gene family 99.1 3.1E-10 1.1E-14 111.5 9.1 117 164-299 18-138 (201)
121 2iwr_A Centaurin gamma 1; ANK 99.1 6E-10 2E-14 106.9 10.9 113 165-298 6-121 (178)
122 3sop_A Neuronal-specific septi 99.0 1.5E-10 5.3E-15 122.0 7.1 129 165-300 1-155 (270)
123 1nrj_B SR-beta, signal recogni 99.0 7.7E-10 2.6E-14 110.2 11.2 118 165-300 11-135 (218)
124 3llu_A RAS-related GTP-binding 99.0 2.1E-10 7.1E-15 113.0 7.0 126 163-299 17-143 (196)
125 3l0i_B RAS-related protein RAB 99.0 6.1E-11 2.1E-15 116.9 3.0 120 164-300 31-153 (199)
126 2j1l_A RHO-related GTP-binding 99.0 4.5E-10 1.5E-14 112.5 9.4 116 165-299 33-152 (214)
127 3c5c_A RAS-like protein 12; GD 99.0 5.7E-10 1.9E-14 109.2 9.8 119 164-298 19-140 (187)
128 1m2o_B GTP-binding protein SAR 99.0 3.5E-10 1.2E-14 111.2 8.3 114 166-299 23-138 (190)
129 1f6b_A SAR1; gtpases, N-termin 99.0 7.6E-10 2.6E-14 109.7 10.6 113 166-298 25-139 (198)
130 3cpj_B GTP-binding protein YPT 99.0 1.4E-10 4.9E-15 116.7 5.4 120 164-299 11-132 (223)
131 2qag_C Septin-7; cell cycle, c 99.0 4.1E-10 1.4E-14 126.0 9.2 129 164-299 29-181 (418)
132 2atx_A Small GTP binding prote 99.0 5.1E-10 1.7E-14 109.3 8.6 117 165-299 17-136 (194)
133 1lnz_A SPO0B-associated GTP-bi 99.0 1.1E-10 3.6E-15 127.5 4.1 124 168-298 160-287 (342)
134 2qag_B Septin-6, protein NEDD5 99.0 7.1E-10 2.4E-14 124.2 10.7 127 167-300 43-191 (427)
135 1mh1_A RAC1; GTP-binding, GTPa 99.0 3.4E-10 1.2E-14 108.8 6.9 116 165-299 4-123 (186)
136 2gco_A H9, RHO-related GTP-bin 99.0 2.5E-10 8.7E-15 112.8 6.0 117 165-299 24-143 (201)
137 2fv8_A H6, RHO-related GTP-bin 99.0 3.4E-10 1.2E-14 112.4 6.9 116 166-299 25-143 (207)
138 4gzl_A RAS-related C3 botulinu 99.0 3.2E-10 1.1E-14 112.7 6.0 116 165-299 29-148 (204)
139 1m7b_A RND3/RHOE small GTP-bin 99.0 3.9E-10 1.3E-14 109.6 6.0 116 164-298 5-124 (184)
140 1wxq_A GTP-binding protein; st 99.0 5.7E-10 1.9E-14 124.0 7.7 89 167-262 1-113 (397)
141 3o47_A ADP-ribosylation factor 99.0 2.4E-09 8.1E-14 115.7 12.4 115 165-299 164-280 (329)
142 3ihw_A Centg3; RAS, centaurin, 99.0 2.1E-09 7.1E-14 105.3 10.5 115 162-298 16-132 (184)
143 1pui_A ENGB, probable GTP-bind 99.0 2.6E-09 8.8E-14 105.6 11.1 125 164-298 24-150 (210)
144 3t1o_A Gliding protein MGLA; G 98.9 2.7E-09 9.2E-14 103.3 10.8 121 165-299 13-149 (198)
145 3q3j_B RHO-related GTP-binding 98.9 7.9E-10 2.7E-14 111.0 7.1 117 164-298 25-144 (214)
146 3cbq_A GTP-binding protein REM 98.9 6.4E-09 2.2E-13 102.8 13.2 122 164-299 21-144 (195)
147 1gwn_A RHO-related GTP-binding 98.9 6.7E-10 2.3E-14 111.1 5.9 116 164-298 26-145 (205)
148 2g3y_A GTP-binding protein GEM 98.9 3.5E-09 1.2E-13 107.3 11.3 122 164-298 35-158 (211)
149 2j0v_A RAC-like GTP-binding pr 98.9 1.4E-09 4.6E-14 108.0 7.4 117 165-299 8-127 (212)
150 3lvq_E ARF-GAP with SH3 domain 98.9 1.4E-09 4.7E-14 123.2 7.9 114 165-298 321-436 (497)
151 3bwd_D RAC-like GTP-binding pr 98.9 2.7E-10 9.1E-15 109.3 1.6 115 165-298 7-125 (182)
152 2zej_A Dardarin, leucine-rich 98.9 1.9E-09 6.7E-14 105.0 7.1 117 166-298 2-125 (184)
153 3p26_A Elongation factor 1 alp 98.9 6E-09 2.1E-13 118.2 11.7 117 166-298 33-184 (483)
154 3th5_A RAS-related C3 botulinu 98.4 2.4E-10 8.3E-15 112.9 0.0 117 165-299 29-148 (204)
155 3h2y_A GTPase family protein; 98.9 2.3E-10 8E-15 125.8 -0.5 121 167-299 161-287 (368)
156 2qnr_A Septin-2, protein NEDD5 98.9 9.7E-10 3.3E-14 117.5 4.2 129 165-299 17-169 (301)
157 3ec1_A YQEH GTPase; atnos1, at 98.8 2E-10 6.8E-15 126.3 -1.4 122 167-300 163-289 (369)
158 3izq_1 HBS1P, elongation facto 98.8 3.4E-09 1.2E-13 123.8 7.6 119 164-299 165-319 (611)
159 2cjw_A GTP-binding protein GEM 98.8 5.1E-09 1.7E-13 103.3 7.7 120 166-298 6-127 (192)
160 2f9l_A RAB11B, member RAS onco 98.8 8.9E-09 3E-13 101.5 9.0 118 165-298 4-123 (199)
161 4dkx_A RAS-related protein RAB 98.8 7.4E-09 2.5E-13 105.5 8.6 116 166-298 13-131 (216)
162 2wkq_A NPH1-1, RAS-related C3 98.8 4.5E-09 1.5E-13 111.0 7.2 114 166-298 155-272 (332)
163 3sjy_A Translation initiation 98.8 7E-09 2.4E-13 114.9 9.0 119 163-298 5-142 (403)
164 1wb1_A Translation elongation 98.8 8.8E-09 3E-13 117.1 9.7 115 165-298 18-138 (482)
165 2j37_W Signal recognition part 98.8 1.7E-08 5.7E-13 115.5 10.9 119 165-299 100-254 (504)
166 3tr5_A RF-3, peptide chain rel 98.8 6.8E-09 2.3E-13 119.4 7.6 113 167-298 14-147 (528)
167 1zun_B Sulfate adenylate trans 98.8 2.6E-08 8.9E-13 111.4 11.7 116 165-298 23-170 (434)
168 2c78_A Elongation factor TU-A; 98.7 1.2E-08 4.1E-13 113.0 8.4 115 165-298 10-141 (405)
169 1s0u_A EIF-2-gamma, translatio 98.7 4.3E-08 1.5E-12 108.7 12.7 119 165-300 7-150 (408)
170 1oix_A RAS-related protein RAB 98.7 5.7E-08 1.9E-12 95.5 12.0 119 164-298 27-147 (191)
171 1d2e_A Elongation factor TU (E 98.7 2.1E-08 7.3E-13 110.9 10.0 114 166-298 3-132 (397)
172 2xex_A Elongation factor G; GT 98.7 2.5E-08 8.5E-13 118.2 10.6 117 164-299 8-141 (693)
173 1puj_A YLQF, conserved hypothe 98.7 1.2E-08 4.1E-13 108.2 7.0 62 165-229 119-180 (282)
174 1kk1_A EIF2gamma; initiation o 98.7 5.7E-08 1.9E-12 107.7 11.7 117 165-298 9-150 (410)
175 3dm5_A SRP54, signal recogniti 98.7 1.5E-08 5.1E-13 114.0 6.4 119 165-298 99-252 (443)
176 1f60_A Elongation factor EEF1A 98.6 2.3E-08 7.8E-13 112.9 7.2 117 165-298 6-158 (458)
177 1jny_A EF-1-alpha, elongation 98.6 3.1E-08 1.1E-12 110.9 7.8 118 165-299 5-158 (435)
178 3mca_A HBS1, elongation factor 98.6 5.7E-09 2E-13 121.5 1.7 118 164-298 175-328 (592)
179 2elf_A Protein translation elo 98.6 2.9E-08 1E-12 109.2 7.3 101 168-297 23-125 (370)
180 2h5e_A Peptide chain release f 98.6 7.2E-08 2.5E-12 110.9 10.5 113 167-298 14-147 (529)
181 1dar_A EF-G, elongation factor 98.6 1.1E-07 3.7E-12 112.7 11.2 116 165-299 11-143 (691)
182 2www_A Methylmalonic aciduria 98.6 2.8E-08 9.7E-13 108.3 5.7 23 166-188 74-96 (349)
183 1udx_A The GTP-binding protein 98.6 6.2E-08 2.1E-12 108.3 8.5 122 168-298 159-282 (416)
184 1jal_A YCHF protein; nucleotid 98.6 2.3E-08 8E-13 109.9 4.8 88 167-261 3-107 (363)
185 1r5b_A Eukaryotic peptide chai 98.6 7.3E-08 2.5E-12 109.0 8.3 116 166-299 43-195 (467)
186 2p67_A LAO/AO transport system 98.5 2.5E-07 8.4E-12 100.4 10.9 107 166-298 56-207 (341)
187 2rdo_7 EF-G, elongation factor 98.5 3.5E-07 1.2E-11 108.6 13.0 117 164-299 8-148 (704)
188 3dpu_A RAB family protein; roc 98.5 1.4E-07 4.9E-12 108.0 9.0 116 163-299 38-164 (535)
189 3avx_A Elongation factor TS, e 98.5 2.8E-07 9.5E-12 113.5 11.5 117 163-298 293-425 (1289)
190 1zo1_I IF2, translation initia 98.5 3.2E-08 1.1E-12 113.0 2.9 115 165-299 3-117 (501)
191 3p32_A Probable GTPase RV1496/ 98.5 1.1E-07 3.6E-12 103.8 6.8 23 165-187 78-100 (355)
192 1f5n_A Interferon-induced guan 98.5 4E-07 1.4E-11 105.9 11.4 64 165-228 37-105 (592)
193 3izy_P Translation initiation 98.5 1.3E-08 4.3E-13 117.3 -1.3 115 165-299 3-118 (537)
194 2v3c_C SRP54, signal recogniti 98.5 1.6E-07 5.4E-12 105.5 7.3 119 166-298 99-251 (432)
195 2ohf_A Protein OLA1, GTP-bindi 98.5 6.9E-08 2.3E-12 107.3 4.3 90 164-260 20-126 (396)
196 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1.4E-07 4.8E-12 104.7 6.7 91 164-260 18-125 (392)
197 3kl4_A SRP54, signal recogniti 98.4 7.4E-08 2.5E-12 108.2 4.0 121 165-298 96-251 (433)
198 3cb4_D GTP-binding protein LEP 98.4 4E-07 1.4E-11 106.2 10.0 115 166-299 4-137 (599)
199 2ywe_A GTP-binding protein LEP 98.4 4.7E-07 1.6E-11 105.6 9.4 114 166-298 6-138 (600)
200 3c5h_A Glucocorticoid receptor 98.4 3.4E-07 1.1E-11 94.9 7.1 28 162-189 15-51 (255)
201 1n0u_A EF-2, elongation factor 98.4 4.3E-07 1.5E-11 109.8 8.3 113 167-298 20-163 (842)
202 3cnl_A YLQF, putative uncharac 98.4 1.2E-07 4.1E-12 99.5 2.7 60 167-229 100-159 (262)
203 2dby_A GTP-binding protein; GD 98.3 3.3E-07 1.1E-11 100.9 6.2 88 167-261 2-110 (368)
204 1g7s_A Translation initiation 98.3 7.4E-07 2.5E-11 103.8 8.2 114 166-299 5-136 (594)
205 2yhs_A FTSY, cell division pro 98.3 1.1E-06 3.9E-11 99.9 9.2 119 165-298 292-451 (503)
206 2dy1_A Elongation factor G; tr 98.3 2.3E-06 7.8E-11 101.0 11.9 115 165-298 8-139 (665)
207 2qm8_A GTPase/ATPase; G protei 98.3 6.2E-07 2.1E-11 97.3 6.5 23 166-188 55-77 (337)
208 3r7w_B Gtpase2, GTP-binding pr 98.2 2.1E-06 7.1E-11 93.2 8.9 119 168-299 1-120 (331)
209 1tq4_A IIGP1, interferon-induc 98.2 6.7E-07 2.3E-11 99.9 4.7 114 167-298 70-188 (413)
210 1j8m_F SRP54, signal recogniti 98.2 6E-06 2.1E-10 88.2 11.3 120 166-298 98-252 (297)
211 1yrb_A ATP(GTP)binding protein 98.2 4.5E-07 1.5E-11 93.0 2.4 30 166-195 14-48 (262)
212 3szr_A Interferon-induced GTP- 98.1 1.1E-05 3.6E-10 94.3 11.9 81 214-300 147-229 (608)
213 3e70_C DPA, signal recognition 98.1 4E-06 1.4E-10 90.9 6.9 119 165-298 128-281 (328)
214 3vqt_A RF-3, peptide chain rel 98.0 1E-05 3.5E-10 93.5 10.2 113 167-298 32-165 (548)
215 2wsm_A Hydrogenase expression/ 98.0 4.6E-06 1.6E-10 83.1 6.1 23 167-189 31-53 (221)
216 2xxa_A Signal recognition part 98.0 2E-05 6.8E-10 88.5 10.2 119 165-298 99-253 (433)
217 1rj9_A FTSY, signal recognitio 97.9 5.9E-06 2E-10 88.6 4.4 125 165-298 101-260 (304)
218 2og2_A Putative signal recogni 97.8 0.00011 3.6E-09 80.7 13.1 24 165-188 156-179 (359)
219 3q5d_A Atlastin-1; G protein, 97.8 2.3E-05 7.9E-10 88.3 8.0 62 166-228 67-154 (447)
220 2ffh_A Protein (FFH); SRP54, s 97.8 2.2E-05 7.5E-10 88.0 7.3 119 165-298 97-250 (425)
221 3b9q_A Chloroplast SRP recepto 97.8 0.00012 4.1E-09 78.3 12.0 24 165-188 99-122 (302)
222 3j25_A Tetracycline resistance 97.7 1.1E-05 3.8E-10 94.7 3.9 114 167-299 3-133 (638)
223 2px0_A Flagellar biosynthesis 97.7 4.9E-05 1.7E-09 81.0 8.2 118 166-298 105-252 (296)
224 4fn5_A EF-G 1, elongation fact 97.7 0.00012 4E-09 87.0 11.0 112 167-298 14-150 (709)
225 1vma_A Cell division protein F 97.6 1.7E-05 6E-10 85.1 1.6 24 165-188 103-126 (306)
226 1t9h_A YLOQ, probable GTPase E 97.4 3.3E-05 1.1E-09 83.0 1.8 57 167-227 174-237 (307)
227 1zu4_A FTSY; GTPase, signal re 97.4 0.00026 8.8E-09 76.4 8.1 119 165-298 104-267 (320)
228 1ls1_A Signal recognition part 97.2 0.00012 4.1E-09 77.9 2.2 119 165-298 97-250 (295)
229 2yv5_A YJEQ protein; hydrolase 97.1 0.00031 1.1E-08 74.8 4.9 56 167-226 166-228 (302)
230 4ido_A Atlastin-1; GTPase, GTP 97.1 0.0041 1.4E-07 70.2 14.0 63 167-229 68-155 (457)
231 2rcn_A Probable GTPase ENGC; Y 97.1 0.00015 5.3E-09 79.4 2.0 59 167-227 216-281 (358)
232 1u0l_A Probable GTPase ENGC; p 97.0 0.00028 9.6E-09 75.0 3.7 58 167-227 170-234 (301)
233 4fid_A G protein alpha subunit 97.0 0.0042 1.4E-07 67.6 12.1 85 201-298 148-241 (340)
234 3ohm_A Guanine nucleotide-bind 96.9 0.0031 1.1E-07 68.3 10.8 85 201-298 154-247 (327)
235 1cip_A Protein (guanine nucleo 96.8 0.0023 7.7E-08 70.0 8.3 84 202-298 181-273 (353)
236 3ney_A 55 kDa erythrocyte memb 96.2 0.00029 9.9E-09 71.1 -2.9 56 167-225 20-77 (197)
237 1ye8_A Protein THEP1, hypothet 95.4 0.0054 1.8E-07 60.3 2.3 23 168-190 2-24 (178)
238 1lvg_A Guanylate kinase, GMP k 95.4 0.0053 1.8E-07 60.9 2.1 23 167-189 5-27 (198)
239 1kgd_A CASK, peripheral plasma 95.3 0.0061 2.1E-07 59.3 2.3 24 167-190 6-29 (180)
240 1znw_A Guanylate kinase, GMP k 95.1 0.0076 2.6E-07 59.8 2.3 24 167-190 21-44 (207)
241 4dzz_A Plasmid partitioning pr 95.1 0.042 1.4E-06 53.4 7.6 113 168-297 3-142 (206)
242 1zp6_A Hypothetical protein AT 95.1 0.014 4.7E-07 56.5 3.9 24 166-189 9-32 (191)
243 3tr0_A Guanylate kinase, GMP k 94.8 0.012 4E-07 57.5 2.7 23 167-189 8-30 (205)
244 3a00_A Guanylate kinase, GMP k 94.8 0.0093 3.2E-07 58.2 2.0 23 168-190 3-25 (186)
245 1z6g_A Guanylate kinase; struc 94.8 0.0098 3.3E-07 59.9 2.1 24 167-190 24-47 (218)
246 3c8u_A Fructokinase; YP_612366 94.8 0.013 4.5E-07 58.2 2.9 24 166-189 22-45 (208)
247 2pcj_A ABC transporter, lipopr 94.7 0.014 4.8E-07 59.3 3.1 23 168-190 32-54 (224)
248 3tif_A Uncharacterized ABC tra 94.7 0.013 4.5E-07 60.1 2.9 24 167-190 32-55 (235)
249 4b4t_I 26S protease regulatory 94.7 0.24 8.2E-06 55.5 13.0 72 166-263 216-287 (437)
250 1ex7_A Guanylate kinase; subst 94.6 0.01 3.5E-07 59.1 1.8 22 169-190 4-25 (186)
251 2kjq_A DNAA-related protein; s 94.6 0.11 3.8E-06 49.2 8.9 23 167-189 37-59 (149)
252 1s96_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 59.8 2.1 25 167-191 17-41 (219)
253 2hf9_A Probable hydrogenase ni 94.5 0.019 6.5E-07 56.9 3.4 23 167-189 39-61 (226)
254 4gp7_A Metallophosphoesterase; 94.5 0.016 5.4E-07 56.0 2.6 22 167-188 10-31 (171)
255 4b4t_L 26S protease subunit RP 94.5 0.23 7.9E-06 55.7 12.4 72 166-263 215-286 (437)
256 2cbz_A Multidrug resistance-as 94.4 0.017 5.8E-07 59.3 2.9 23 168-190 33-55 (237)
257 3tau_A Guanylate kinase, GMP k 94.4 0.018 6.1E-07 57.3 3.0 24 167-190 9-32 (208)
258 3asz_A Uridine kinase; cytidin 94.4 0.018 6E-07 56.8 2.9 24 166-189 6-29 (211)
259 2eyu_A Twitching motility prot 94.4 0.014 4.9E-07 60.8 2.3 23 167-189 26-48 (261)
260 1mv5_A LMRA, multidrug resista 94.4 0.018 6.1E-07 59.2 2.9 24 167-190 29-52 (243)
261 1g6h_A High-affinity branched- 94.4 0.018 6E-07 59.8 2.9 23 168-190 35-57 (257)
262 4g1u_C Hemin import ATP-bindin 94.3 0.018 6.2E-07 60.2 3.0 23 168-190 39-61 (266)
263 1b0u_A Histidine permease; ABC 94.3 0.018 6.3E-07 60.0 2.9 23 168-190 34-56 (262)
264 2onk_A Molybdate/tungstate ABC 94.3 0.019 6.4E-07 59.2 2.9 23 168-190 26-48 (240)
265 3gfo_A Cobalt import ATP-bindi 94.3 0.018 6.3E-07 60.6 2.9 23 168-190 36-58 (275)
266 2pze_A Cystic fibrosis transme 94.3 0.019 6.5E-07 58.6 2.9 23 168-190 36-58 (229)
267 2ff7_A Alpha-hemolysin translo 94.3 0.019 6.5E-07 59.3 2.9 23 168-190 37-59 (247)
268 1ji0_A ABC transporter; ATP bi 94.2 0.02 6.9E-07 58.8 2.9 23 168-190 34-56 (240)
269 1sgw_A Putative ABC transporte 94.2 0.02 6.7E-07 58.2 2.7 23 168-190 37-59 (214)
270 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.25 8.4E-06 49.8 10.9 23 166-188 39-61 (262)
271 2olj_A Amino acid ABC transpor 94.1 0.021 7.2E-07 59.7 2.9 23 168-190 52-74 (263)
272 2d2e_A SUFC protein; ABC-ATPas 94.1 0.021 7.1E-07 59.0 2.9 22 168-189 31-52 (250)
273 2qi9_C Vitamin B12 import ATP- 94.1 0.022 7.4E-07 59.1 2.9 23 168-190 28-50 (249)
274 2zu0_C Probable ATP-dependent 94.1 0.022 7.4E-07 59.6 2.9 22 168-189 48-69 (267)
275 2ghi_A Transport protein; mult 94.1 0.022 7.6E-07 59.3 2.9 23 168-190 48-70 (260)
276 1vpl_A ABC transporter, ATP-bi 94.1 0.023 7.7E-07 59.2 2.9 23 168-190 43-65 (256)
277 2ixe_A Antigen peptide transpo 94.0 0.023 7.8E-07 59.6 2.9 23 168-190 47-69 (271)
278 2ihy_A ABC transporter, ATP-bi 94.0 0.023 8E-07 59.8 2.9 23 168-190 49-71 (279)
279 2nq2_C Hypothetical ABC transp 94.0 0.024 8.2E-07 58.8 2.9 24 168-191 33-56 (253)
280 3h4m_A Proteasome-activating n 93.9 0.12 4E-06 53.2 8.1 23 167-189 52-74 (285)
281 2j41_A Guanylate kinase; GMP, 93.9 0.024 8.4E-07 55.2 2.8 24 167-190 7-30 (207)
282 2yz2_A Putative ABC transporte 93.9 0.025 8.4E-07 59.1 2.9 23 168-190 35-57 (266)
283 1fnn_A CDC6P, cell division co 93.9 0.18 6.1E-06 53.7 9.7 22 168-189 46-67 (389)
284 3b85_A Phosphate starvation-in 93.9 0.02 6.7E-07 57.8 2.0 29 168-197 24-52 (208)
285 2i3b_A HCR-ntpase, human cance 93.9 0.018 6.1E-07 57.2 1.7 23 168-190 3-25 (189)
286 1htw_A HI0065; nucleotide-bind 93.8 0.024 8.1E-07 54.8 2.3 24 167-190 34-57 (158)
287 4b4t_H 26S protease regulatory 93.7 0.46 1.6E-05 53.7 12.9 73 166-264 243-315 (467)
288 2bdt_A BH3686; alpha-beta prot 93.7 0.025 8.4E-07 54.8 2.3 22 167-188 3-24 (189)
289 3nh6_A ATP-binding cassette SU 93.7 0.021 7.1E-07 61.2 1.9 24 167-190 81-104 (306)
290 2gza_A Type IV secretion syste 93.6 0.029 9.8E-07 61.1 2.8 24 167-190 176-199 (361)
291 2v9p_A Replication protein E1; 93.6 0.025 8.7E-07 60.6 2.3 23 167-189 127-149 (305)
292 1lv7_A FTSH; alpha/beta domain 93.5 0.24 8.4E-06 50.2 9.6 23 167-189 46-68 (257)
293 4b4t_J 26S protease regulatory 93.5 0.21 7.2E-06 55.5 9.6 72 167-264 183-254 (405)
294 3lnc_A Guanylate kinase, GMP k 93.5 0.023 8E-07 57.1 1.8 24 167-190 28-52 (231)
295 2bbw_A Adenylate kinase 4, AK4 93.5 0.034 1.2E-06 56.5 3.0 25 167-191 28-55 (246)
296 3jvv_A Twitching mobility prot 93.5 0.026 9E-07 61.6 2.3 23 167-189 124-146 (356)
297 2pjz_A Hypothetical protein ST 93.5 0.033 1.1E-06 58.2 2.9 24 167-190 31-54 (263)
298 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.03 1E-06 60.3 2.7 23 168-190 173-195 (330)
299 4b4t_K 26S protease regulatory 93.4 0.35 1.2E-05 54.1 11.3 70 167-262 207-276 (428)
300 2bbs_A Cystic fibrosis transme 93.4 0.036 1.2E-06 58.8 3.1 23 168-190 66-88 (290)
301 2qor_A Guanylate kinase; phosp 93.3 0.032 1.1E-06 55.0 2.4 23 167-189 13-35 (204)
302 4a74_A DNA repair and recombin 93.3 0.033 1.1E-06 55.0 2.5 23 167-189 26-48 (231)
303 2ewv_A Twitching motility prot 93.2 0.03 1E-06 61.3 2.3 23 167-189 137-159 (372)
304 1kag_A SKI, shikimate kinase I 93.2 0.031 1.1E-06 53.0 2.1 23 167-189 5-27 (173)
305 4eun_A Thermoresistant glucoki 93.2 0.036 1.2E-06 54.5 2.5 23 167-189 30-52 (200)
306 3aez_A Pantothenate kinase; tr 93.2 0.04 1.4E-06 59.0 3.1 26 164-189 88-113 (312)
307 2f1r_A Molybdopterin-guanine d 93.0 0.023 7.9E-07 55.6 0.8 22 168-189 4-25 (171)
308 1ly1_A Polynucleotide kinase; 93.0 0.048 1.6E-06 51.7 3.1 22 167-188 3-24 (181)
309 3lw7_A Adenylate kinase relate 93.0 0.045 1.5E-06 51.1 2.8 20 167-186 2-21 (179)
310 2oap_1 GSPE-2, type II secreti 92.9 0.04 1.4E-06 63.1 2.7 23 167-189 261-283 (511)
311 3uie_A Adenylyl-sulfate kinase 92.9 0.045 1.5E-06 53.8 2.8 23 167-189 26-48 (200)
312 1p9r_A General secretion pathw 92.9 0.034 1.2E-06 62.1 2.1 23 167-189 168-190 (418)
313 3b9p_A CG5977-PA, isoform A; A 92.9 0.48 1.6E-05 48.9 10.7 23 167-189 55-77 (297)
314 3ec2_A DNA replication protein 92.8 0.036 1.2E-06 53.3 1.9 23 167-189 39-61 (180)
315 2jeo_A Uridine-cytidine kinase 92.8 0.047 1.6E-06 55.6 2.8 24 166-189 25-48 (245)
316 3cwq_A Para family chromosome 92.8 0.033 1.1E-06 55.6 1.6 110 168-298 2-133 (209)
317 1knq_A Gluconate kinase; ALFA/ 92.8 0.055 1.9E-06 51.6 3.1 22 167-188 9-30 (175)
318 2qt1_A Nicotinamide riboside k 92.7 0.074 2.5E-06 52.3 4.1 27 163-189 18-44 (207)
319 3fvq_A Fe(3+) IONS import ATP- 92.7 0.051 1.7E-06 59.5 3.1 23 168-190 32-54 (359)
320 2ehv_A Hypothetical protein PH 92.7 0.05 1.7E-06 54.4 2.8 21 167-187 31-51 (251)
321 1cke_A CK, MSSA, protein (cyti 92.6 0.046 1.6E-06 54.2 2.4 23 167-189 6-28 (227)
322 4b4t_M 26S protease regulatory 92.6 0.19 6.4E-06 56.4 7.6 72 166-263 215-286 (434)
323 3tqc_A Pantothenate kinase; bi 92.6 0.16 5.6E-06 54.6 6.9 26 163-188 89-114 (321)
324 3tui_C Methionine import ATP-b 92.5 0.052 1.8E-06 59.6 2.9 23 168-190 56-78 (366)
325 1z47_A CYSA, putative ABC-tran 92.5 0.053 1.8E-06 59.3 2.9 23 168-190 43-65 (355)
326 1xwi_A SKD1 protein; VPS4B, AA 92.5 0.42 1.4E-05 50.9 9.9 23 167-189 46-68 (322)
327 3qf7_A RAD50; ABC-ATPase, ATPa 92.4 0.22 7.5E-06 54.2 7.7 20 168-187 25-44 (365)
328 3kb2_A SPBC2 prophage-derived 92.4 0.059 2E-06 50.6 2.7 21 168-188 3-23 (173)
329 1np6_A Molybdopterin-guanine d 92.4 0.051 1.7E-06 53.4 2.3 23 167-189 7-29 (174)
330 2if2_A Dephospho-COA kinase; a 92.3 0.055 1.9E-06 52.9 2.5 22 167-188 2-23 (204)
331 2yyz_A Sugar ABC transporter, 92.3 0.057 2E-06 59.1 2.9 23 168-190 31-53 (359)
332 1sq5_A Pantothenate kinase; P- 92.3 0.067 2.3E-06 56.7 3.3 25 165-189 79-103 (308)
333 1lw7_A Transcriptional regulat 92.3 0.045 1.5E-06 59.3 2.0 24 166-189 170-193 (365)
334 3t15_A Ribulose bisphosphate c 92.3 0.16 5.5E-06 53.3 6.3 25 164-188 34-58 (293)
335 2it1_A 362AA long hypothetical 92.3 0.059 2E-06 59.1 2.9 23 168-190 31-53 (362)
336 3rlf_A Maltose/maltodextrin im 92.3 0.059 2E-06 59.5 2.9 23 168-190 31-53 (381)
337 1g29_1 MALK, maltose transport 92.2 0.061 2.1E-06 59.1 2.9 23 168-190 31-53 (372)
338 1jjv_A Dephospho-COA kinase; P 92.2 0.07 2.4E-06 52.3 3.0 22 167-188 3-24 (206)
339 1v43_A Sugar-binding transport 92.1 0.064 2.2E-06 59.0 2.9 23 168-190 39-61 (372)
340 1d2n_A N-ethylmaleimide-sensit 92.1 0.39 1.3E-05 49.2 8.7 24 166-189 64-87 (272)
341 1rz3_A Hypothetical protein rb 92.1 0.076 2.6E-06 52.4 3.2 23 166-188 22-44 (201)
342 2cdn_A Adenylate kinase; phosp 92.0 0.085 2.9E-06 51.6 3.5 28 161-188 15-42 (201)
343 2rhm_A Putative kinase; P-loop 92.0 0.085 2.9E-06 50.7 3.4 23 166-188 5-27 (193)
344 3d31_A Sulfate/molybdate ABC t 91.8 0.054 1.9E-06 59.0 2.0 23 168-190 28-50 (348)
345 3gd7_A Fusion complex of cysti 91.8 0.074 2.5E-06 58.9 3.1 23 168-190 49-71 (390)
346 1kht_A Adenylate kinase; phosp 91.8 0.079 2.7E-06 50.7 2.9 22 167-188 4-25 (192)
347 1qhx_A CPT, protein (chloramph 91.7 0.081 2.8E-06 50.3 2.9 22 167-188 4-25 (178)
348 1nks_A Adenylate kinase; therm 91.5 0.094 3.2E-06 50.1 3.1 22 167-188 2-23 (194)
349 3cm0_A Adenylate kinase; ATP-b 91.5 0.092 3.1E-06 50.3 3.0 22 166-187 4-25 (186)
350 1zcb_A G alpha I/13; GTP-bindi 91.5 0.18 6.2E-06 55.1 5.6 85 201-298 188-281 (362)
351 1oxx_K GLCV, glucose, ABC tran 91.5 0.051 1.7E-06 59.3 1.3 23 168-190 33-55 (353)
352 3kta_A Chromosome segregation 91.5 0.074 2.5E-06 51.0 2.3 20 168-187 28-47 (182)
353 2vp4_A Deoxynucleoside kinase; 91.5 0.095 3.2E-06 52.9 3.2 25 165-189 19-43 (230)
354 2jaq_A Deoxyguanosine kinase; 91.4 0.089 3E-06 50.8 2.8 21 168-188 2-22 (205)
355 3t61_A Gluconokinase; PSI-biol 91.4 0.07 2.4E-06 52.2 2.1 22 167-188 19-40 (202)
356 1odf_A YGR205W, hypothetical 3 91.3 0.095 3.2E-06 55.5 3.2 25 165-189 30-54 (290)
357 4e22_A Cytidylate kinase; P-lo 91.3 0.1 3.5E-06 53.6 3.3 21 167-187 28-48 (252)
358 3fb4_A Adenylate kinase; psych 91.3 0.09 3.1E-06 51.8 2.7 21 167-187 1-21 (216)
359 3vaa_A Shikimate kinase, SK; s 91.2 0.095 3.3E-06 51.4 2.8 22 167-188 26-47 (199)
360 1ixz_A ATP-dependent metallopr 91.2 0.075 2.6E-06 54.0 2.1 22 168-189 51-72 (254)
361 1sky_E F1-ATPase, F1-ATP synth 91.1 0.099 3.4E-06 59.3 3.1 23 167-189 152-174 (473)
362 2w0m_A SSO2452; RECA, SSPF, un 91.0 0.08 2.8E-06 52.0 2.1 22 167-188 24-45 (235)
363 1nij_A Hypothetical protein YJ 90.9 0.082 2.8E-06 56.4 2.2 23 168-190 6-28 (318)
364 1tev_A UMP-CMP kinase; ploop, 90.9 0.12 4E-06 49.5 3.1 22 166-187 3-24 (196)
365 2x8a_A Nuclear valosin-contain 90.9 0.078 2.7E-06 55.4 2.0 21 169-189 47-67 (274)
366 1yqt_A RNAse L inhibitor; ATP- 90.9 0.098 3.4E-06 60.1 2.9 25 166-190 47-71 (538)
367 3dl0_A Adenylate kinase; phosp 90.9 0.1 3.5E-06 51.5 2.7 22 167-188 1-22 (216)
368 1gvn_B Zeta; postsegregational 90.8 0.13 4.3E-06 54.2 3.5 25 164-188 31-55 (287)
369 1iy2_A ATP-dependent metallopr 90.8 0.21 7.1E-06 51.6 5.0 22 168-189 75-96 (278)
370 3b60_A Lipid A export ATP-bind 90.7 0.11 3.8E-06 60.0 3.1 23 168-190 371-393 (582)
371 1gtv_A TMK, thymidylate kinase 90.6 0.083 2.9E-06 51.7 1.8 21 168-188 2-22 (214)
372 2plr_A DTMP kinase, probable t 90.6 0.13 4.5E-06 50.0 3.1 23 166-188 4-26 (213)
373 3trf_A Shikimate kinase, SK; a 90.6 0.12 4E-06 49.6 2.8 22 167-188 6-27 (185)
374 1uf9_A TT1252 protein; P-loop, 90.5 0.15 5.1E-06 49.3 3.5 25 165-189 7-31 (203)
375 3ozx_A RNAse L inhibitor; ATP 90.5 0.16 5.5E-06 58.4 4.2 26 166-191 25-50 (538)
376 2ce7_A Cell division protein F 90.4 0.68 2.3E-05 52.4 9.2 23 167-189 50-72 (476)
377 2v54_A DTMP kinase, thymidylat 90.4 0.14 4.8E-06 49.7 3.1 24 166-189 4-27 (204)
378 1jbk_A CLPB protein; beta barr 90.3 0.15 5E-06 47.9 3.1 23 167-189 44-66 (195)
379 2c95_A Adenylate kinase 1; tra 90.3 0.15 5.2E-06 49.0 3.3 21 167-187 10-30 (196)
380 4a82_A Cystic fibrosis transme 90.3 0.1 3.5E-06 60.3 2.4 23 168-190 369-391 (578)
381 1zak_A Adenylate kinase; ATP:A 90.3 0.12 4.3E-06 51.3 2.7 23 166-188 5-27 (222)
382 2npi_A Protein CLP1; CLP1-PCF1 90.2 0.091 3.1E-06 59.3 1.9 24 167-190 139-162 (460)
383 1y63_A LMAJ004144AAA protein; 90.2 0.16 5.5E-06 49.2 3.4 24 166-189 10-33 (184)
384 1aky_A Adenylate kinase; ATP:A 90.2 0.14 4.7E-06 50.9 3.0 23 166-188 4-26 (220)
385 1zd8_A GTP:AMP phosphotransfer 90.2 0.14 4.8E-06 51.1 3.1 22 166-187 7-28 (227)
386 1nn5_A Similar to deoxythymidy 90.2 0.15 5.2E-06 49.7 3.3 23 166-188 9-31 (215)
387 1cr0_A DNA primase/helicase; R 90.2 0.11 3.6E-06 54.2 2.2 23 167-189 36-58 (296)
388 3b5x_A Lipid A export ATP-bind 90.2 0.12 4E-06 59.8 2.7 23 168-190 371-393 (582)
389 3qf4_B Uncharacterized ABC tra 90.2 0.11 3.9E-06 60.2 2.6 23 168-190 383-405 (598)
390 2yl4_A ATP-binding cassette SU 90.2 0.11 3.7E-06 60.2 2.5 23 168-190 372-394 (595)
391 1e4v_A Adenylate kinase; trans 90.1 0.14 4.9E-06 50.6 2.9 22 167-188 1-22 (214)
392 3j16_B RLI1P; ribosome recycli 90.1 0.16 5.3E-06 59.4 3.7 26 167-192 104-129 (608)
393 2wwf_A Thymidilate kinase, put 90.0 0.15 5.3E-06 49.7 3.1 23 166-188 10-32 (212)
394 2obl_A ESCN; ATPase, hydrolase 89.9 0.12 4.2E-06 56.0 2.5 24 167-190 72-95 (347)
395 3qf4_A ABC transporter, ATP-bi 89.9 0.12 4.1E-06 59.9 2.5 23 168-190 371-393 (587)
396 2yvu_A Probable adenylyl-sulfa 89.9 0.19 6.4E-06 48.5 3.6 25 165-189 12-36 (186)
397 2p5t_B PEZT; postsegregational 89.9 0.17 5.7E-06 51.9 3.3 26 163-188 29-54 (253)
398 3bk7_A ABC transporter ATP-bin 89.9 0.13 4.6E-06 59.9 2.9 26 166-191 117-142 (607)
399 3vfd_A Spastin; ATPase, microt 89.7 1.1 3.7E-05 48.7 9.9 23 167-189 149-171 (389)
400 2bwj_A Adenylate kinase 5; pho 89.7 0.17 5.8E-06 48.8 3.1 22 167-188 13-34 (199)
401 3tlx_A Adenylate kinase 2; str 89.6 0.18 6E-06 51.5 3.3 22 166-187 29-50 (243)
402 2pez_A Bifunctional 3'-phospho 89.5 0.16 5.5E-06 48.6 2.7 23 166-188 5-27 (179)
403 2pt5_A Shikimate kinase, SK; a 89.5 0.16 5.5E-06 47.7 2.7 21 168-188 2-22 (168)
404 1azs_C GS-alpha; complex (lyas 89.4 0.41 1.4E-05 53.2 6.2 85 201-298 204-297 (402)
405 3euj_A Chromosome partition pr 89.4 0.13 4.6E-06 58.4 2.3 22 168-189 31-52 (483)
406 3iij_A Coilin-interacting nucl 89.4 0.18 6E-06 48.3 2.9 21 167-187 12-32 (180)
407 1vht_A Dephospho-COA kinase; s 89.4 0.19 6.7E-06 49.6 3.3 23 166-188 4-26 (218)
408 1in4_A RUVB, holliday junction 89.3 0.12 4.3E-06 55.1 2.0 22 168-189 53-74 (334)
409 1ukz_A Uridylate kinase; trans 89.3 0.22 7.4E-06 48.5 3.5 23 166-188 15-37 (203)
410 1ewq_A DNA mismatch repair pro 89.3 0.48 1.6E-05 56.8 7.1 22 168-189 578-599 (765)
411 1qf9_A UMP/CMP kinase, protein 89.3 0.2 6.8E-06 47.8 3.2 23 166-188 6-28 (194)
412 2cvh_A DNA repair and recombin 89.2 0.15 5.1E-06 49.9 2.3 22 167-188 21-42 (220)
413 2ze6_A Isopentenyl transferase 89.2 0.17 5.9E-06 52.0 2.8 21 168-188 3-23 (253)
414 3ozx_A RNAse L inhibitor; ATP 88.9 0.2 6.8E-06 57.6 3.4 25 168-192 296-320 (538)
415 2z0h_A DTMP kinase, thymidylat 88.9 0.19 6.4E-06 48.4 2.7 21 168-188 2-22 (197)
416 1yqt_A RNAse L inhibitor; ATP- 88.9 0.22 7.6E-06 57.1 3.7 28 168-195 314-341 (538)
417 2pbr_A DTMP kinase, thymidylat 88.8 0.19 6.5E-06 48.0 2.7 21 168-188 2-22 (195)
418 1via_A Shikimate kinase; struc 88.8 0.16 5.6E-06 48.4 2.2 21 168-188 6-26 (175)
419 4f4c_A Multidrug resistance pr 88.8 0.14 4.7E-06 65.0 2.1 22 168-189 1107-1128(1321)
420 3thx_A DNA mismatch repair pro 88.8 0.57 1.9E-05 57.4 7.4 20 167-186 663-682 (934)
421 1n0w_A DNA repair protein RAD5 88.8 0.17 5.7E-06 50.4 2.3 23 167-189 25-47 (243)
422 2xb4_A Adenylate kinase; ATP-b 88.6 0.2 6.8E-06 50.2 2.8 21 168-188 2-22 (223)
423 2vli_A Antibiotic resistance p 88.5 0.16 5.6E-06 48.3 2.0 22 166-187 5-26 (183)
424 3zvl_A Bifunctional polynucleo 88.5 0.11 3.6E-06 57.7 0.7 24 166-189 258-281 (416)
425 2dpy_A FLII, flagellum-specifi 88.5 0.18 6.1E-06 56.6 2.5 24 167-190 158-181 (438)
426 3bk7_A ABC transporter ATP-bin 88.4 0.24 8.4E-06 57.7 3.7 26 168-193 384-409 (607)
427 1f2t_A RAD50 ABC-ATPase; DNA d 88.4 0.19 6.5E-06 47.6 2.3 20 168-187 25-44 (149)
428 2p65_A Hypothetical protein PF 88.3 0.2 6.9E-06 47.0 2.5 22 167-188 44-65 (187)
429 3be4_A Adenylate kinase; malar 88.3 0.21 7.1E-06 49.7 2.6 21 167-187 6-26 (217)
430 3syl_A Protein CBBX; photosynt 88.2 0.6 2E-05 48.3 6.2 25 164-188 65-89 (309)
431 3a4m_A L-seryl-tRNA(SEC) kinas 88.2 0.24 8.3E-06 50.9 3.1 23 166-188 4-26 (260)
432 1xjc_A MOBB protein homolog; s 88.2 0.23 7.9E-06 48.7 2.8 22 167-188 5-26 (169)
433 1m7g_A Adenylylsulfate kinase; 88.0 0.24 8.3E-06 48.9 2.9 23 167-189 26-48 (211)
434 1ak2_A Adenylate kinase isoenz 87.9 0.26 9E-06 49.5 3.1 23 166-188 16-38 (233)
435 4aby_A DNA repair protein RECN 87.7 0.13 4.3E-06 56.2 0.7 20 168-187 62-81 (415)
436 3bos_A Putative DNA replicatio 87.7 0.25 8.5E-06 48.6 2.8 22 167-188 53-74 (242)
437 3sr0_A Adenylate kinase; phosp 87.7 0.25 8.4E-06 49.7 2.8 22 167-188 1-22 (206)
438 1e6c_A Shikimate kinase; phosp 87.6 0.24 8.1E-06 46.7 2.4 21 168-188 4-24 (173)
439 3cf2_A TER ATPase, transitiona 87.6 1.5 5E-05 52.9 9.7 24 166-189 238-261 (806)
440 2w58_A DNAI, primosome compone 87.3 0.28 9.6E-06 47.7 2.9 22 167-188 55-76 (202)
441 1q3t_A Cytidylate kinase; nucl 87.3 0.26 9E-06 49.6 2.7 28 161-188 11-38 (236)
442 3j16_B RLI1P; ribosome recycli 87.2 0.25 8.6E-06 57.7 2.8 24 169-192 381-404 (608)
443 3r20_A Cytidylate kinase; stru 87.1 0.28 9.6E-06 50.4 2.9 23 166-188 9-31 (233)
444 2zan_A Vacuolar protein sortin 87.1 1.1 3.9E-05 49.8 8.0 23 167-189 168-190 (444)
445 3ug7_A Arsenical pump-driving 87.0 8 0.00027 41.5 14.4 21 167-187 27-47 (349)
446 2iyv_A Shikimate kinase, SK; t 86.7 0.28 9.7E-06 46.9 2.5 21 167-187 3-23 (184)
447 1ltq_A Polynucleotide kinase; 86.7 0.32 1.1E-05 50.5 3.1 22 167-188 3-24 (301)
448 3nwj_A ATSK2; P loop, shikimat 86.5 0.22 7.6E-06 51.6 1.7 22 167-188 49-70 (250)
449 3te6_A Regulatory protein SIR3 86.5 0.82 2.8E-05 49.1 6.2 23 167-189 46-68 (318)
450 2f6r_A COA synthase, bifunctio 86.4 0.38 1.3E-05 50.3 3.4 23 165-187 74-96 (281)
451 1qhl_A Protein (cell division 86.4 0.062 2.1E-06 55.1 -2.5 21 169-189 30-50 (227)
452 1uj2_A Uridine-cytidine kinase 86.4 0.35 1.2E-05 49.3 3.1 24 165-188 21-44 (252)
453 1svm_A Large T antigen; AAA+ f 86.3 0.32 1.1E-05 53.5 2.9 22 167-188 170-191 (377)
454 1nlf_A Regulatory protein REPA 86.3 0.29 1E-05 50.6 2.5 22 167-188 31-52 (279)
455 1wb9_A DNA mismatch repair pro 86.2 1.2 4.1E-05 53.7 8.0 23 167-189 608-630 (800)
456 4f4c_A Multidrug resistance pr 86.0 0.33 1.1E-05 61.5 3.2 23 168-190 446-468 (1321)
457 2iw3_A Elongation factor 3A; a 86.0 0.22 7.6E-06 61.1 1.6 23 168-190 701-723 (986)
458 1zuh_A Shikimate kinase; alpha 86.0 0.35 1.2E-05 45.6 2.7 21 167-187 8-28 (168)
459 4eaq_A DTMP kinase, thymidylat 85.9 0.41 1.4E-05 48.5 3.3 25 165-189 25-49 (229)
460 2qmh_A HPR kinase/phosphorylas 85.8 0.43 1.5E-05 48.4 3.3 24 167-190 35-58 (205)
461 3pvs_A Replication-associated 85.8 2 6.9E-05 48.0 9.2 23 167-189 51-73 (447)
462 3umf_A Adenylate kinase; rossm 85.8 0.48 1.7E-05 48.1 3.7 26 163-188 26-51 (217)
463 1njg_A DNA polymerase III subu 85.8 0.34 1.2E-05 46.9 2.5 22 167-188 46-67 (250)
464 2chg_A Replication factor C sm 85.6 0.35 1.2E-05 46.4 2.5 21 168-188 40-60 (226)
465 3g5u_A MCG1178, multidrug resi 85.5 0.32 1.1E-05 61.4 2.8 23 168-190 418-440 (1284)
466 3ux8_A Excinuclease ABC, A sub 85.5 0.29 1E-05 57.4 2.2 20 168-187 350-369 (670)
467 1sxj_E Activator 1 40 kDa subu 85.2 0.29 9.9E-06 51.8 1.8 20 169-188 39-58 (354)
468 3co5_A Putative two-component 85.0 0.45 1.5E-05 44.2 2.8 23 167-189 28-50 (143)
469 3qks_A DNA double-strand break 84.9 0.39 1.3E-05 47.7 2.5 19 168-186 25-43 (203)
470 2qby_A CDC6 homolog 1, cell di 84.7 0.36 1.2E-05 51.0 2.3 23 167-189 46-68 (386)
471 3a8t_A Adenylate isopentenyltr 84.7 0.52 1.8E-05 51.2 3.5 56 167-224 41-105 (339)
472 3cr8_A Sulfate adenylyltranfer 84.4 0.33 1.1E-05 56.0 2.0 24 166-189 369-392 (552)
473 2xtz_A Guanine nucleotide-bind 84.3 0.57 2E-05 51.0 3.7 85 201-298 164-263 (354)
474 2dr3_A UPF0273 protein PH0284; 84.2 0.47 1.6E-05 47.1 2.8 21 167-187 24-44 (247)
475 3n70_A Transport activator; si 84.1 0.44 1.5E-05 44.4 2.3 22 167-188 25-46 (145)
476 2vhj_A Ntpase P4, P4; non- hyd 84.1 0.68 2.3E-05 50.1 4.1 21 168-188 125-145 (331)
477 3thx_B DNA mismatch repair pro 84.0 0.98 3.3E-05 55.2 5.9 22 167-188 674-695 (918)
478 3d8b_A Fidgetin-like protein 1 83.9 1.2 4.1E-05 47.9 6.0 22 167-188 118-139 (357)
479 1xp8_A RECA protein, recombina 83.9 4.5 0.00015 44.1 10.6 21 167-187 75-95 (366)
480 4ag6_A VIRB4 ATPase, type IV s 83.8 0.4 1.4E-05 52.1 2.2 24 166-189 35-58 (392)
481 1zcb_A G alpha I/13; GTP-bindi 83.6 0.56 1.9E-05 51.2 3.3 23 164-186 31-53 (362)
482 3cf0_A Transitional endoplasmi 83.5 0.5 1.7E-05 49.5 2.7 23 167-189 50-72 (301)
483 3nbx_X ATPase RAVA; AAA+ ATPas 83.4 1.1 3.7E-05 51.1 5.7 22 167-188 42-63 (500)
484 2iw3_A Elongation factor 3A; a 83.4 0.41 1.4E-05 58.8 2.3 21 168-188 463-483 (986)
485 3ake_A Cytidylate kinase; CMP 83.4 0.53 1.8E-05 45.5 2.7 21 168-188 4-24 (208)
486 1tue_A Replication protein E1; 83.3 0.45 1.5E-05 48.4 2.1 21 168-188 60-80 (212)
487 3crm_A TRNA delta(2)-isopenten 83.2 0.57 1.9E-05 50.5 3.1 23 167-189 6-28 (323)
488 4fcw_A Chaperone protein CLPB; 83.1 0.6 2.1E-05 48.3 3.1 22 167-188 48-69 (311)
489 3exa_A TRNA delta(2)-isopenten 83.0 0.61 2.1E-05 50.3 3.2 59 167-227 4-71 (322)
490 3foz_A TRNA delta(2)-isopenten 83.0 0.67 2.3E-05 49.9 3.5 60 166-227 10-78 (316)
491 2grj_A Dephospho-COA kinase; T 82.8 0.61 2.1E-05 46.2 2.9 23 166-188 12-34 (192)
492 1ko7_A HPR kinase/phosphatase; 82.4 0.56 1.9E-05 50.4 2.6 24 167-190 145-168 (314)
493 1qvr_A CLPB protein; coiled co 82.3 0.97 3.3E-05 54.5 4.9 23 167-189 192-214 (854)
494 1e69_A Chromosome segregation 82.3 0.49 1.7E-05 50.2 2.1 20 168-187 26-45 (322)
495 1p5z_B DCK, deoxycytidine kina 82.3 0.58 2E-05 47.9 2.6 25 165-189 23-47 (263)
496 3g5u_A MCG1178, multidrug resi 82.2 0.55 1.9E-05 59.4 2.9 23 168-190 1061-1083(1284)
497 3d3q_A TRNA delta(2)-isopenten 82.2 0.63 2.1E-05 50.6 2.9 22 167-188 8-29 (340)
498 3u61_B DNA polymerase accessor 82.1 3.1 0.00011 43.4 8.2 21 168-188 50-70 (324)
499 1ofh_A ATP-dependent HSL prote 82.0 0.6 2E-05 48.0 2.6 22 167-188 51-72 (310)
500 1l8q_A Chromosomal replication 81.9 0.59 2E-05 49.1 2.5 23 167-189 38-60 (324)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.91 E-value=1.8e-24 Score=226.00 Aligned_cols=214 Identities=29% Similarity=0.486 Sum_probs=171.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++...+.++...++|.........+.+..+.|+||||+.+.. ...+...+.+.+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~----~~~~~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG----YVNHQALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT----EECHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc----cchHHHHHHHHH
Confidence 3589999999999999999999999887777776777777777778899999999999997753 334566677777
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhChHHHHHH
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQR 324 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~~~lq~~ 324 (791)
++...++|+++||+++|.......+..+++.+.+.++...+.++++|+||+|+.++++ ..+++|+++....+++.
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~-----~~~e~~~~~~~~~l~~~ 185 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLLKT 185 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC-----ccHHHHHHhhhHHHHHH
Confidence 7766688999999888875543345678999999999888889999999999875433 46888998877889999
Q ss_pred HHHHhcccCC-----cchhhhhhcCccccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhcccc
Q 003857 325 IHQAVSDARL-----ENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRD 388 (791)
Q Consensus 325 I~q~~~d~~~-----~~pv~lVen~P~c~~n~~ge~vLP~~~~W~~~L~~~C~s~ki~~eA~~~lk~~~ 388 (791)
|.++.+.... ..|+.++++.+.|..|..|+.+||++++|++.|+..- ...+....++++.+++
T Consensus 186 i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~ 253 (262)
T 3def_A 186 IRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAI-TDVATNQRKAIHVDAA 253 (262)
T ss_dssp HHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHH-HHHHTSCSCCEEC---
T ss_pred HHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHH-HHHHhCCCCceeccHH
Confidence 9988876553 3788899999999999999999999999999999874 4446666666665554
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.89 E-value=1e-22 Score=213.29 Aligned_cols=213 Identities=29% Similarity=0.500 Sum_probs=166.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|+|||||+|+|++.....++...++|.....+.....+..+.||||||+.+.. ..+....+.+.++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~----~~~~~~~~~i~~~ 114 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG----YINDMALNIIKSF 114 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT----EECHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc----cchHHHHHHHHHH
Confidence 489999999999999999999998877777666777777777777889999999999997653 2234455666666
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhChHHHHHHH
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRI 325 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~~~lq~~I 325 (791)
+...++|++|||++++..+....+..+++.+.+.++..++.++++|+||+|+.++++ ..+++|+++....+++.+
T Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~-----~~~~~~~~~~~~~l~~~~ 189 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVV 189 (270)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG-----CCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC-----CCHHHHHHHHHHHHHHHH
Confidence 655578999999888765443345678889999888888899999999999875543 368888887777888888
Q ss_pred HHHhcccCCc----chhhhhhcCccccccccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhcccc
Q 003857 326 HQAVSDARLE----NQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRD 388 (791)
Q Consensus 326 ~q~~~d~~~~----~pv~lVen~P~c~~n~~ge~vLP~~~~W~~~L~~~C~s~ki~~eA~~~lk~~~ 388 (791)
++..+..+.. .|+.++++.+.|.++..+++++|+.++|.+.|+..-.. .+..+.+.++-++.
T Consensus 190 ~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~-~~~~~~~~l~~d~~ 255 (270)
T 1h65_A 190 RSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITE-VALNKSESIFVDKN 255 (270)
T ss_dssp HHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHH-HHTSSSCCEECCHH
T ss_pred HHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHH-HHhcCCCceecCHH
Confidence 7644432222 48889999999999999999999999999988876544 46666666665544
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=167.00 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=102.9
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccC-CCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDA-FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~-~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
.....++|+|+|++|||||||+|+|+|........ ...+|..+......+.+..+.||||||+.+.... ...+.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~----~~~~~~ 100 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP----NAETSK 100 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC---------CHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC----HHHHHH
Confidence 34556999999999999999999999988754432 1245666777777889999999999999887433 233334
Q ss_pred HHHHHHhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCCCCccchHHHHhhCh
Q 003857 241 SVKKFIRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCT 318 (791)
Q Consensus 241 ~ikk~l~~--~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~~ 318 (791)
.+.+++.. .++|++|+|++++..+ ..+...++.+.+.|+...+.|+++|+||+|..... .+++|+....
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~-------~~~~~i~~~~ 171 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYT--EEEHKATEKILKMFGERARSFMILIFTRKDDLGDT-------NLHDYLREAP 171 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCS--SHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------------C
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCC--HHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc-------cHHHHHHhch
Confidence 44444432 3689999997766433 35667888888888877778999999999987432 3556676656
Q ss_pred HHHHHHHHHHhcc
Q 003857 319 DLVQQRIHQAVSD 331 (791)
Q Consensus 319 ~~lq~~I~q~~~d 331 (791)
..+++.+++|...
T Consensus 172 ~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 172 EDIQDLMDIFGDR 184 (239)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCE
Confidence 6788888887554
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=6.3e-16 Score=160.37 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=108.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccC-CCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDA-FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~-~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|||.+|||||||+|+|+|...+.+.. ..++|..+......+.+..++||||||+.+..... .+.....+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~~~i~ 96 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK---TDPGCEERG 96 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH---HSTTSHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc---HHHHHHHHH
Confidence 45899999999999999999999998887643 33466677777788899999999999998763221 122233343
Q ss_pred HHH--hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc-cccEEEEEeccCCCCCCCCCCCccchHHHHhhC-hH
Q 003857 244 KFI--RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI-WFNTILVMTHSSSTLPEGSSGYPFSYESYVTQC-TD 319 (791)
Q Consensus 244 k~l--~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i-~k~vIVVLTK~D~l~pd~~~~~~~~~e~~i~q~-~~ 319 (791)
+++ ...++|++|+|++++.. ...+..+++.+.+.||... ..++++|.||.|+.. ..+++++.+. ..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--------~~~~~~l~~~~~~ 166 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRF--TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG--------GSLHDYVSNTENR 166 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBC--CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCCH
T ss_pred HHHHhcCCCCCEEEEEEeCCCC--CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC--------CCHHHHHhhcccH
Confidence 333 22578999999777643 3356678899999998765 357788889999752 2467777653 36
Q ss_pred HHHHHHHHHhcc
Q 003857 320 LVQQRIHQAVSD 331 (791)
Q Consensus 320 ~lq~~I~q~~~d 331 (791)
.++..+++|.+.
T Consensus 167 ~l~~l~~~~g~~ 178 (247)
T 3lxw_A 167 ALRELVAECGGR 178 (247)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHcCCe
Confidence 788888887554
No 5
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=2.1e-15 Score=171.35 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCCCce
Q 003857 91 PLVKIEDLQVKFLRLLQRFGQSQ---DNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSI 167 (791)
Q Consensus 91 ~~~kIe~lR~~Ll~l~~rLg~~~---ed~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~~~l 167 (791)
+.+.++.||..|+++.+.+++.+ +|++ ..+.+..+.+.+..+...+..+.......+.+ ..+ +
T Consensus 169 ls~~i~~lr~~L~~~~a~iea~iDf~eedi--~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~-----r~~-------~ 234 (476)
T 3gee_A 169 LSVRLGGLREQLIRSCALIELELDFSEEDV--EFQSRDELTMQIETLRSEVNRLIDSYQHGRIV-----SEG-------V 234 (476)
T ss_dssp HHHHHHHHHTHHHHHHHTTTTCSSCCSSCC--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHC-------E
T ss_pred HHHHHHHHHHHHHHHHHHhheecCCCcccc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh-----cCC-------C
Confidence 55668999999999999999876 2322 11223344555555555555554433333333 444 8
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHH-HHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKI-MLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i-~~~ikk~l 246 (791)
+|+|+|.+|||||||+|+|++.+.+.++..+++|.++......++|.++.|+||||+.+... ..+.+ ++....++
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~----~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE----EIEHEGIRRSRMKM 310 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------------------------CCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh----HHHHHHHHHHHhhc
Confidence 99999999999999999999998888877767777887777888999999999999976421 11111 11111122
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|++.+.... .... .....+.. +. ..|+++|+||+|+..
T Consensus 311 --~~aD~vl~VvD~s~~~s-~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 311 --AEADLILYLLDLGTERL-DDELTEIRELKAA-HP---AAKFLTVANKLDRAA 357 (476)
T ss_dssp --SSCSEEEEEEETTTCSS-GGGHHHHHHHHHH-CT---TSEEEEEEECTTSCT
T ss_pred --ccCCEEEEEEECCCCcc-hhhhHHHHHHHHh-cC---CCCEEEEEECcCCCC
Confidence 46899999966654321 1111 22222222 22 479999999999874
No 6
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=2.4e-14 Score=148.06 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=104.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCC-ceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP-ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~-~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
...++|+|+|.+|||||||+|+|+|...+.+...+. +|..+......+.+..+.||||||+.+.... ...+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~----~~~~~~~i 95 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH----CEALYKEV 95 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC----CHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC----HHHHHHHH
Confidence 345899999999999999999999988776643222 5666676777889999999999999876432 23333333
Q ss_pred HHHHh--cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEe-ccCCCCCCCCCCCccchHHHHhhC-h
Q 003857 243 KKFIR--RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT-HSSSTLPEGSSGYPFSYESYVTQC-T 318 (791)
Q Consensus 243 kk~l~--~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLT-K~D~l~pd~~~~~~~~~e~~i~q~-~ 318 (791)
.+++. ...+|++++|++++. ....+..+++.+.+.|+...+.+.++|+| |+|+... .+..++... .
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--------~~~~~i~~~~~ 165 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--------SLMDYMHDSDN 165 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--------CHHHHHHHCCC
T ss_pred HHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc--------cHHHHHHhcch
Confidence 33221 147899999977664 22344567788889888777789999999 9998621 245555432 2
Q ss_pred HHHHHHHHHH
Q 003857 319 DLVQQRIHQA 328 (791)
Q Consensus 319 ~~lq~~I~q~ 328 (791)
..+++.+.++
T Consensus 166 ~~~~~~~~~~ 175 (260)
T 2xtp_A 166 KALSKLVAAC 175 (260)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4455555554
No 7
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.54 E-value=2.3e-14 Score=150.42 Aligned_cols=129 Identities=21% Similarity=0.314 Sum_probs=76.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccC-------CCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhh
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA-------FQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKR 234 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~-------~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~ 234 (791)
++.++|+|+|.+|+|||||+|+|++...+.... .+..+..........+| .++.|+||||+++..... ..
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~-~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS-NC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT-TT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch-hh
Confidence 456899999999999999999999988776542 11122234444444455 489999999998753211 11
Q ss_pred hHHHH----HHHHHHHh-----------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 235 NRKIM----LSVKKFIR-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 235 n~~i~----~~ikk~l~-----------~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
-..+. .....++. ..++|+++|++..........+..+++.+.. ..|+++|+||+|++.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 11111 11222222 2357899999544433333344455555443 489999999999874
No 8
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.51 E-value=1.2e-14 Score=164.59 Aligned_cols=183 Identities=20% Similarity=0.224 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCChh--hHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCCCce
Q 003857 90 DPLVKIEDLQVKFLRLLQRFGQSQD--NILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSI 167 (791)
Q Consensus 90 ~~~~kIe~lR~~Ll~l~~rLg~~~e--d~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~~~l 167 (791)
.+...++.||..|+++.+.+++.++ +++ ..+.+..+...+..+...+..+.......+.+ ..+ +
T Consensus 160 ~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~-----r~~-------~ 225 (462)
T 3geh_A 160 KLAHPIRQLRANCLDILAEIEARIDFEEDL--PPLDDEAIISDIENIAAEISQLLATKDKGELL-----RTG-------L 225 (462)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTSSSSS--CCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH-----HHC-------E
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccC--ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----cCC-------C
Confidence 3556688899999999888776552 111 11223345556666666666555444443333 445 8
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|++|||||||+|+|++.+.+.++..+++|.++......++|.++.|+||||+.+... ..+.+ .+.+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~----~ve~~--gi~~~~~ 299 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD----QVEKI--GVERSRQ 299 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------C
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh----HHHHH--HHHHHhh
Confidence 99999999999999999999988887777767777766666677899999999999975421 11111 0112111
Q ss_pred -cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 248 -RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 248 -~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
...+|++++|++.+... ...+..+++.+ . .+|+++|+||+|+...
T Consensus 300 ~~~~aD~vl~VvD~s~~~-~~~~~~i~~~l----~---~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 300 AANTADLVLLTIDAATGW-TTGDQEIYEQV----K---HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CCCSCSEEEEEEETTTCS-CHHHHHHHHHH----T---TSCEEEEEECTTSSCG
T ss_pred hhhcCCEEEEEeccCCCC-CHHHHHHHHhc----c---CCcEEEEEECCCCCcc
Confidence 13689999996655421 11222233322 2 1699999999998753
No 9
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=3.2e-14 Score=161.79 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCChh--hHHHHHHHhhhhHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhhcCCCCCCCceEE
Q 003857 92 LVKIEDLQVKFLRLLQRFGQSQD--NILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSIRI 169 (791)
Q Consensus 92 ~~kIe~lR~~Ll~l~~rLg~~~e--d~lva~vL~rl~lae~i~~~~~~l~~~~~~~~~~~~la~~~e~~g~~~~~~~l~I 169 (791)
...++.||..|+++.+.++..++ +++ ..+.+. +...+..+...++.+.......+.+ ..+ ++|
T Consensus 182 ~~~~~~~r~~l~~~~~~ie~~idf~eei--~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~-----r~~-------~kV 246 (482)
T 1xzp_A 182 RDFVDSLRRELIEVLAEIRVELDYPDEI--ETNTGE-VVTRLERIKEKLTEELKKADAGILL-----NRG-------LRM 246 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTC--CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHC-------EEE
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCccc--cchHHH-HHHHHHHHHHHHHHHHHhhhhhhhc-----cCC-------CEE
Confidence 34466677777777666554431 111 101112 3444444444444443332222222 344 899
Q ss_pred EEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCC-CccccchhhhHHHHHHHHHHHhc
Q 003857 170 LVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL-PSCVRNVKRNRKIMLSVKKFIRR 248 (791)
Q Consensus 170 lLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~-d~~~~~~~~n~~i~~~ikk~l~~ 248 (791)
+|+|.||||||||+|+|++.+.+.++.++++|.++......++|.+++|+||||+. +.... .....+... ..++
T Consensus 247 ~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~--ve~~gi~~~-~~~~-- 321 (482)
T 1xzp_A 247 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL--VERLGIERT-LQEI-- 321 (482)
T ss_dssp EEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT--CCCCCHHHH-HHHH--
T ss_pred EEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhh--HHHHHHHHH-HHHh--
Confidence 99999999999999999999888888777777777777777899999999999997 54211 111111111 1223
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 249 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 249 ~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++|+|++++... ...+.++++.+ . .+|+++|+||+|+..
T Consensus 322 ~~aD~vl~VvD~s~~~-s~~~~~il~~l----~---~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 322 EKADIVLFVLDASSPL-DEEDRKILERI----K---NKRYLVVINKVDVVE 364 (482)
T ss_dssp HHCSEEEEEEETTSCC-CHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred hcccEEEEEecCCCCC-CHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence 2469999996654331 11233333322 1 379999999999863
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=1.1e-13 Score=138.39 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=86.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeE-ECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++.. .+.++...++|..+...... ..+..+.|+||||+.+..... ...+.....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG-AAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS-THHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh-hhHHHHHHH
Confidence 345899999999999999999999987 45666655666666555544 567899999999998764332 122233333
Q ss_pred HHHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+..++... .+|+++||++.... ....+..+++.+.. ...|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRP-LTELDRRMIEWFAP-----TGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHGG-----GCCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCC-CCHHHHHHHHHHHh-----cCCCEEEEEeccccCC
Confidence 44444433 47889999665432 11233344444443 2479999999999873
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.45 E-value=4.4e-13 Score=143.48 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=86.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..+|+|+|.+|||||||+|+|+|...++++..+.+|...........+.+++|+||||+.+... ..++.+......+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---HHHHHHHHHHHHH
Confidence 4689999999999999999999999887766555666555555566789999999999986521 2233333444444
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|++++.. ....+..+++.+.+.+ ...|+++|+||+|+.
T Consensus 84 l--~~ad~il~VvD~~~~-~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 84 L--ADVNAVVWVVDLRHP-PTPEDELVARALKPLV---GKVPILLVGNKLDAA 130 (301)
T ss_dssp T--SSCSEEEEEEETTSC-CCHHHHHHHHHHGGGT---TTSCEEEEEECGGGC
T ss_pred H--hcCCEEEEEEECCCC-CChHHHHHHHHHHhhc---CCCCEEEEEECcccC
Confidence 4 468999999666532 1122334444444332 137999999999986
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.43 E-value=3.7e-13 Score=144.12 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=89.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC-CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~-G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...+..|+|+|.+|||||||+|+|+|....+++....+|........... +..++|+||||+.+.... ...++.+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~-~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS-DVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT-CHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc-hhHHHHHHHH
Confidence 34457999999999999999999999998887776666766666666777 999999999999875311 1233444444
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHH-HHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPL-LKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~l-lk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++. .+|++++|++++... ...+..+ ++.+.. ...|+++|+||+|+.
T Consensus 86 ~~~~l~--~aD~il~VvD~~~~~-~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 86 AKQSLE--EADVILFMIDATEGW-RPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHH--HCSEEEEEEETTTBS-CHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHhh--cCCEEEEEEeCCCCC-CchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 555553 569999996665321 1123333 333333 247999999999986
No 13
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.41 E-value=1.4e-12 Score=126.52 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=84.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..+|+|+|.+|||||||+|.|.+.....+...+++|.+.......+++..+.++||||+.+.... .....+ .....+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~-~~~~~~ 80 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE--VERIGI-ERAWQE 80 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH--HHHHHH-HHHHHH
Confidence 37999999999999999999999876556655566666666666778999999999999754210 111111 111122
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|++.+.... ..+..++..+.+... ...|+++|+||+|+.
T Consensus 81 ~--~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 81 I--EQADRVLFMVDGTTTDA-VDPAEIWPEFIARLP--AKLPITVVRNKADIT 128 (172)
T ss_dssp H--HTCSEEEEEEETTTCCC-CSHHHHCHHHHHHSC--TTCCEEEEEECHHHH
T ss_pred H--HhCCEEEEEEECCCCCC-HHHHHHHHHHHHhcc--cCCCEEEEEECccCC
Confidence 3 35799999976654322 234455555555432 247899999999985
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.38 E-value=1.5e-12 Score=126.92 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|+|.+|||||||+|+|++.. ...+....+.|.....+.. +.++.|+||||+.+..... ...+.....+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~-~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSK-SEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCH-HHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCH-HHHHHHHHHHH
Confidence 45899999999999999999999986 3444444444555444332 3479999999987764321 11222222233
Q ss_pred HHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~-~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++... .+|++++|++++... ...+..+++.+.. ...|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAP-SNDDVQMYEFLKY-----YGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH-----TTCCEEEEEECGGGSC
T ss_pred HHHhhhhcCCEEEEEEECCCCC-CHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence 444322 458999996654321 1223344555544 2479999999999874
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.37 E-value=2.8e-12 Score=124.38 Aligned_cols=126 Identities=18% Similarity=0.225 Sum_probs=80.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|+|++.....+....+.|..+.... .+.++.++||||+....... ...+.......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSK-KERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCH-HHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCCh-hhHHHHHHHHH
Confidence 445799999999999999999999988555555545555544333 25578999999987653221 11222222223
Q ss_pred HHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~-~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++.. ..+|++++|++.+... ...+..+++.+... ..|+++|+||+|+..
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPP-QDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHhcCcCceEEEEEecCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 33332 3568999996554321 12233445555443 479999999999873
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=1.9e-12 Score=145.09 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=76.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+|||++|||||||+|.|++...+.++..+++|++.......+.|..+.|+||||+...... .....+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD--IISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGG--CCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccc--hHHHHHHHHHHHHH
Confidence 3799999999999999999999988878777677777777778889999999999999753111 11233334444445
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+|++|+|++.... ....+..+.+.+.+. .+|+++|+||+|+.
T Consensus 80 --~~ad~il~V~D~~~~-~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 --READLVLFVVDGKRG-ITKEDESLADFLRKS-----TVDTILVANKAENL 123 (439)
T ss_dssp --TTCSEEEEEEETTTC-CCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred --HhCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 567999999654321 112344455555543 48999999999964
No 17
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.37 E-value=3.2e-12 Score=120.11 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=76.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+|+|.+|||||||+|+|++.....+....+.|.+.........+..+.|+||||...... ...........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK----WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS----CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc----hHHHHHHHHHHHH
Confidence 589999999999999999999887555555545566666666777899999999999975421 1222233333334
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|++.... ....+..+.+.+.+. ..|+++|+||+|+..
T Consensus 78 --~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 78 --EDAEVVLFAVDGRAE-LTQADYEVAEYLRRK-----GKPVILVATKVDDPK 122 (161)
T ss_dssp --TTCSEEEEEEESSSC-CCHHHHHHHHHHHHH-----TCCEEEEEECCCSGG
T ss_pred --HhCCEEEEEEECCCc-ccHhHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence 467999999665542 111223344444432 478999999999863
No 18
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.36 E-value=9.3e-12 Score=125.98 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=80.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|+|++.... +.....+|..+........+..+.|+||||..+.... .........+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFE--NRNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGG--GCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccc--hhhhHHHHHHH
Confidence 34689999999999999999999998654 4444445556666666678899999999999764321 11111122333
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
.+. ..+|+++||++++.... .........+..........|+++|+||+|+...
T Consensus 104 ~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 104 ALA--HINGVILFIIDISEQCG-LTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHH--TSSEEEEEEEETTCTTS-SCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred Hhh--ccccEEEEEEecccccC-cchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 333 45689999976654321 1112222333333221124799999999998743
No 19
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.36 E-value=2.8e-12 Score=135.05 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc--hhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~--~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|+|.. +.++..+++|.+.........+.++.|+||||..+..... ....+.+ .+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i---~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---AC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHH---HH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHH---HH
Confidence 4899999999999999999999987 5667676777787777777788999999999998753110 0111222 22
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++....+|++++|++..... ....+...+.+. ..|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLE---RNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHH---HHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred HHHhhcCCCEEEEEecCCChH---HHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 333335789999996554321 223344444443 489999999999763
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.33 E-value=3.7e-12 Score=133.15 Aligned_cols=121 Identities=11% Similarity=0.126 Sum_probs=83.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccch--hhhHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVKK 244 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~--~~n~~i~~~ikk 244 (791)
.+|+|+|.+|||||||+|+|+|.. ..++..+++|.+.......+++..+.|+||||..+...... ...+.+. +.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~---~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA---AQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH---HH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH---HH
Confidence 489999999999999999999986 55666667777788778888999999999999976532100 1122222 23
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++....+|++++|++.+... ....+...+.+ ...|+++|+||+|...
T Consensus 78 ~~~~~~~d~vi~VvDas~~~---~~~~l~~~l~~-----~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLE---RHLYLTSQLFE-----LGKPVVVALNMMDIAE 124 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHH---HHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred HHhhCCCCEEEEEeeCCCch---hHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence 44335789999996554421 11222222222 3589999999999864
No 21
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.29 E-value=1.9e-11 Score=127.76 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=83.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|+|.... ++..++.|...........+..+.|+||||....... ...+.+. ..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~e~v~---~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYS--SIDEKIA---RD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSS--SHHHHHH---HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCC--CHHHHHH---HH
Confidence 3589999999999999999999997644 5556677777777777778999999999999765321 1122222 23
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++....+|++++|++.+... ..+..+..... ...|+++|+||+|+..
T Consensus 78 ~~~~~~~d~ii~V~D~t~~~------~~~~~~~~l~~--~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNPE------QSLYLLLEILE--MEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHSCCSEEEEEEETTSCH------HHHHHHHHHHT--TTCCEEEEEECHHHHH
T ss_pred HHhhcCCCEEEEEeCCCchh------hHHHHHHHHHh--cCCCEEEEEECcCCCC
Confidence 34335789999996554321 22223333322 2489999999999763
No 22
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.28 E-value=4.1e-12 Score=142.31 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=109.9
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe-EEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~-~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
....++|+|+|.+|+|||||+|+|++.....++...++|.+.......+.+. ++.||||||+.+......... +.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~----~~ 106 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV----EK 106 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH----HH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH----HH
Confidence 3456899999999999999999999988776666666777776666677665 999999999987532111111 22
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCCCCCC---------CCc-cchH
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSS---------GYP-FSYE 311 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~pd~~~---------~~~-~~~e 311 (791)
...++ ..+|++++|++. +....+..+++.+.+. ..|+++|+||+|+....... +.+ ....
T Consensus 107 ~~~~l--~~aD~vllVvD~---~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 107 ARRVF--YRADCGILVTDS---APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHHHH--TSCSEEEEECSS---SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCS
T ss_pred HHHHH--hcCCEEEEEEeC---CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEE
Confidence 23334 357999999544 2222344555555554 48999999999987544310 000 0000
Q ss_pred HHHhhChHHHHHHHHHHhcccCCcch---------hhhhhcCccccccccCcccCCCccchHHHHHhhhhh
Q 003857 312 SYVTQCTDLVQQRIHQAVSDARLENQ---------VLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCIC 373 (791)
Q Consensus 312 ~~i~q~~~~lq~~I~q~~~d~~~~~p---------v~lVen~P~c~~n~~ge~vLP~~~~W~~~L~~~C~s 373 (791)
.......+.+.+.|.+.+... ...+ ..++-..|.......|..++|..+..+..|...|..
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~-~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~ 246 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD-EEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIA 246 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC-CCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCHHHHHHHHHHhhhhh-ccCcchhhccccCceEEEEeeccccCcCCccccchHHHHHHHHHhhhHH
Confidence 011233444555555554221 1111 112224455666677888888876666666666644
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=1.6e-11 Score=117.73 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
.+..++|+|+|.+|||||||+|+|++.........+..+.........+.+. .+.|+||||.... . .
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~---~ 75 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF--------R---S 75 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH--------H---H
Confidence 3456899999999999999999999876543222222233343334455664 7899999996422 1 1
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
....++ ..+|++++|++++...........+..+..... ...|+++|+||+|+..
T Consensus 76 ~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 76 VTHAYY--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAH 130 (180)
T ss_dssp ---CCG--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTS
T ss_pred HHHHHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCc
Confidence 122233 356999999766543211111233444444332 2478999999999874
No 24
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.28 E-value=1.8e-11 Score=128.02 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=84.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|||||||+|+|+|... .++..++.|.+.......+.+..+.|+||||+.+.... ...+.+ ...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~---~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAH--SIDELI---ARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSS--CHHHHH---HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccC--CHHHHH---HHHh
Confidence 37999999999999999999999865 56666677777877788889999999999999865321 111212 2334
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc-ccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW-FNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~-k~vIVVLTK~D~l~ 299 (791)
+....+|++++|++..... ..+..+..... .. .|+++|+||+|+..
T Consensus 77 ~~~~~~d~vi~v~D~~~~~------~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCLM------RNLFLTLELFE--MEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHTTCCSEEEEEEEGGGHH------HHHHHHHHHHH--TTCCSEEEEEECHHHHH
T ss_pred hhccCCcEEEEEecCCcch------hhHHHHHHHHh--cCCCCEEEEEEChhcCc
Confidence 4446789999996554321 22222222221 13 79999999999763
No 25
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.27 E-value=4e-12 Score=142.28 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=80.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc-hhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN-VKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~-~~~n~~i~~~i 242 (791)
...++|+|+|.+|||||||+|+|+|.....++..+++|.+.......++|..+.||||||+.+..... ..+....+..+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999999888777776777777767778889999999999997542210 01111222222
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++... ...+..++..+.+ ...++++|+||+|+..
T Consensus 253 -~~~--~~ad~~llv~D~~~~~-s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 253 -KAI--DRSEVVAVVLDGEEGI-IEQDKRIAGYAHE-----AGKAVVIVVNKWDAVD 300 (436)
T ss_dssp -HHH--HHCSEEEEEEETTTCC-CHHHHHHHHHHHH-----TTCEEEEEEECGGGSC
T ss_pred -HHH--HhCCEEEEEEcCCcCC-cHHHHHHHHHHHH-----cCCcEEEEEECccCCC
Confidence 123 2469999996654321 1233344444433 2489999999999874
No 26
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.27 E-value=4e-11 Score=126.96 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=72.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc-----cCCCC--ceeEE----------------------------------
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET-----DAFQP--ATDCI---------------------------------- 204 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v-----s~~~~--~Tt~~---------------------------------- 204 (791)
..+|+|+|.+|||||||+|+|+|...... +..+. .|++.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 36999999999999999999999876322 21110 11110
Q ss_pred -----------------EEEE-eEECCeEEEEEeCCCCCCccccc--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc
Q 003857 205 -----------------REVK-GSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS 264 (791)
Q Consensus 205 -----------------~~~~-~~~~G~~l~LIDTPGl~d~~~~~--~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t 264 (791)
..+. ....+.+++||||||+.+..... ....+........++. .+|++++|++.....
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQNAIIVAVTPANTD 181 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHH--STTEEEEEEEESSSC
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc--CCCeEEEEEEecCcc
Confidence 0000 11134689999999997532100 0112334444455553 569888886542222
Q ss_pred CCCCc-HHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 265 MGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 265 ~~~~D-~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
....+ ..+++.+.. ...++++|+||+|+..+
T Consensus 182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 21123 244444432 25799999999998743
No 27
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.3e-11 Score=134.34 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=83.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
..+|+|||.||||||||+|+|+|.. ..+++++.+|.++......+.+.++.|+||||+...... .......+...
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~----~~~~g~~~l~~ 146 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD----GRGRGKQVIAV 146 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC---------CHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh----hhHHHHHHHHH
Confidence 4699999999999999999999976 556777788888888888999999999999999865322 22222233233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc-ccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~-i~k~vIVVLTK~D~l 298 (791)
++ .+|++++|++..... .+.+++..-...++.. ..++.++++||.|..
T Consensus 147 i~--~ad~il~vvD~~~p~---~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 AR--TCNLLFIILDVNKPL---HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HH--HCSEEEEEEETTSHH---HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HH--hcCccccccccCccH---HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 32 359999996544221 2333332222333322 246788999999964
No 28
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=2.7e-11 Score=114.55 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=71.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++...... ..+++...........+ ..+.|+||||..+. .... .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~~~~---~ 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES--YIPTVEDTYRQVISCDKSICTLQITDTTGSHQF--------PAMQ---R 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS--CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC--------HHHH---H
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCccccEEEEEEECCEEEEEEEEECCCchhh--------HHHH---H
Confidence 48999999999999999999998653321 11211111112223333 57899999998543 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. .+|++++|++++...........+..+.+..+.....|+++|+||+|+..
T Consensus 70 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 70 LSIS--KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred Hhcc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 2232 35999999776543211122345555555433222479999999999864
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=118.53 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.|+||||..... ..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~--- 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR--------TI--- 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC--------TT---
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCcccceEEEEEEEECCEEEEEEEEECCCcHhhh--------hh---
Confidence 45689999999999999999999986544332 22334445555556666 578999999964321 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
...++ ..+|++++|++++...........+..+...... ..|+++|+||+|+...
T Consensus 82 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 82 TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred HHHHH--hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence 12233 4579999997665432111122344444444322 4789999999998743
No 30
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.25 E-value=3.5e-12 Score=142.78 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=70.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+|||++|||||||+|+|+|...+.+...+++|.+.......+.+..+.|+||||+..... ...+.+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch---hHHHHHHHHHHHHH
Confidence 589999999999999999999988888877767777777777888899999999999963311 11223333333344
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|++.... ....+..+.+.+.+ ..+|+++|+||+|+..
T Consensus 81 --~~ad~il~vvD~~~~-~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 --DEADVIIFMVNGREG-VTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp --HHCSEEEEEEETTTC-SCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred --HhCCEEEEEEeCCCC-CCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 356999999655322 11223333333332 2589999999999874
No 31
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.25 E-value=3.4e-12 Score=143.69 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=73.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.+|+|+|++|||||||+|.|+|...+.+...++.|.+.......+.+..+.|+||||+..... ...+.+......++
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAEIAM 100 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---------CCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch---HHHHHHHHHHHhhH
Confidence 699999999999999999999988887777767777777778888899999999999874311 12333444444444
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++|+|++.... ....+..+++.+.+ ..+++++|+||+|...
T Consensus 101 --~~ad~il~VvD~~~~-~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 101 --DEADVIIFMVNGREG-VTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp --HHCSEEEEEEESSSC-SCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred --hhCCEEEEEEeCCCC-CChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 357999999554321 22234444444433 3589999999999864
No 32
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.24 E-value=1.3e-11 Score=131.91 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=78.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCC-CccccchhhhHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL-PSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~-d~~~~~~~~n~~i~~~ikk 244 (791)
..+|+|+|++|||||||+|+|+|...++++..+.+|..........++..++++||||+. ... ....+.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-------~~l~~~~~~ 80 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-------RAINRLMNK 80 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-------HHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-------hhHHHHHHH
Confidence 358999999999999999999999887776554556554444556678999999999995 221 111111111
Q ss_pred HHh--cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIR--RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~--~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
... ...+|++++|++.+. ....+..+++.+.. ...|.++|+||+|..
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 111 135789999866543 22233334443332 247999999999976
No 33
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.24 E-value=1.5e-10 Score=126.12 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=83.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|+|++.. ..++.....|...........+..+.++||||+.+.... ..+......+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS--ERNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCST--TSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchh--hhhHHHHHHHH
Confidence 356899999999999999999999987 344444456666665566667889999999999765321 11111122222
Q ss_pred HHHhcCCCCEEEEEEeccCccC-CC-CcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISM-GF-SDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~-~~-~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+. ..+|++|+|++++.... .. ....++..+...++ ..++++|+||+|+.
T Consensus 242 ~~~--~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 242 ALR--YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp GGG--GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred HHH--hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 221 35799999965443210 11 12245555555443 48999999999986
No 34
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=5.1e-11 Score=115.41 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=78.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|.|++... .+...+..|.+.......+++..+.++||||....... ...+.+.. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~---~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN--SIDEIIAR---D 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSS--SHHHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccc--cHHHHHHH---H
Confidence 458999999999999999999998753 33444455666666667778999999999998754211 11122222 2
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++....+|++++|++..... .....+..... ...|+++|+||+|+.
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~--~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATALE------RNLYLTLQLME--MGANLLLALNKMDLA 125 (188)
T ss_dssp HHHHHCCSEEEEEEEGGGHH------HHHHHHHHHHT--TTCCEEEEEECHHHH
T ss_pred HHhccCCCEEEEEecchhHH------HHHHHHHHHHh--cCCCEEEEEEhhhcc
Confidence 23223579999996554321 22223333222 247899999999975
No 35
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.23 E-value=3.3e-11 Score=116.30 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.|+||||.... .. .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~---~ 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS-NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF--------RS---V 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC-CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG--------HH---H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHHH--------HH---H
Confidence 44689999999999999999999987644332 12233344444455566 58899999997321 11 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++...........+..+..... ...|+++|+||+|+.
T Consensus 76 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 76 TRSYY--RGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLD 128 (186)
T ss_dssp HHTTS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGG
T ss_pred HHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccc
Confidence 22333 467999999766543211111233344444322 247899999999986
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=9.6e-12 Score=139.98 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc-hhhhHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN-VKRNRKIMLS 241 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~-~~~n~~i~~~ 241 (791)
....++|+++|.+|||||||+|+|++.+...++...++|.+.........+.++.||||||+.+..... ..+.......
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 345689999999999999999999999888887776667666556667789999999999987642110 0111222222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ .++ ..+|++++|++.... ....+..++..+.+. ..++++|+||+|+..
T Consensus 272 ~-~~~--~~ad~~llviD~~~~-~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 272 L-KAI--DRSEVVAVVLDGEEG-IIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVD 320 (456)
T ss_dssp H-HHH--HHCSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCEEEEEEECGGGSC
T ss_pred H-HHH--hhCCEEEEEEeCCCC-cCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 2 223 246999999655432 222344555555442 489999999999874
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=118.21 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=73.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++...... ..+..|.+.......+.+ ..+.|+||||...... .
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGS-YITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT-----------I 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---C-CTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS-----------C
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCc-cCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh-----------h
Confidence 4458999999999999999999998765532 222344455555556677 6899999999643211 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+.... ...|+++|+||+|+..
T Consensus 75 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 75 TSTYY--RGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPE 127 (181)
T ss_dssp CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGG
T ss_pred HHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCch
Confidence 11223 45799999976654321001112333333322 2478999999999763
No 38
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.22 E-value=8.4e-11 Score=113.89 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=74.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++.. .....+ |.........+++..+.|+||||.... ......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~~~ 81 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED---VDTISP-TLGFNIKTLEHRGFKLNIWDVGGQKSL-----------RSYWRN 81 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC---CSSCCC-CSSEEEEEEEETTEEEEEEEECCSHHH-----------HTTGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC---CCcccc-cCccceEEEEECCEEEEEEECCCCHhH-----------HHHHHH
Confidence 34899999999999999999999877 212212 333444455568899999999998321 011122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++.... -..+...+...... ....|+++|+||+|+..
T Consensus 82 ~~--~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 82 YF--ESTDGLIWVVDSADRQR---MQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp GC--TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred Hh--cCCCEEEEEEECcCHHH---HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 23 46799999966654321 11233334443322 12479999999999864
No 39
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.22 E-value=4.2e-11 Score=114.79 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=72.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|++|||||||+|.|+|... .++..++.|.+.......+++..+.++||||....... ...+.+. ..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~---~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN--SIDEIIA---RDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSS--SHHHHHH---HHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCc--chhHHHH---HHH
Confidence 47999999999999999999998653 23334333444444445567899999999998754211 1111221 222
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+....+|++++|++..... .....+..+.+ ...|+++|.||+|+.
T Consensus 77 ~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 77 IINEKPDLVVNIVDATALE---RNLYLTLQLME-----MGANLLLALNKMDLA 121 (165)
T ss_dssp HHHHCCSEEEEEEETTCHH---HHHHHHHHHHH-----TTCCEEEEEECHHHH
T ss_pred HhcCCCCEEEEEecCCchh---HhHHHHHHHHh-----cCCCEEEEEEchHhc
Confidence 3223579999996554321 11123333332 147999999999975
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.22 E-value=1.4e-11 Score=116.27 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=71.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++........ +..+.........+.+ ..+.|+||||.... ... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~---~~ 70 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE-PTIGAAFLTQRVTINEHTVKFEIWDTAGQERF--------ASL---AP 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-CCSSEEEEEEEEEETTEEEEEEEEEECCSGGG--------GGG---HH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCChhh--------hhh---hh
Confidence 4799999999999999999999766433211 1112222223333444 48999999996432 111 22
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
.++ ..+|++++|++++...........+..+..... ...++++|+||+|+...
T Consensus 71 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 71 XYY--RNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred hhh--ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence 334 456999999766543210011122333443322 24789999999998754
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.22 E-value=1.5e-11 Score=116.27 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=70.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|+|.+|||||||+|+|++...... ....+.+...........+..+.|+||||..... .. ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~---~~ 73 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR--------AL---AP 73 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GG---TH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh--------cc---cH
Confidence 358999999999999999999998764332 2211222222222222223689999999984321 11 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++...........+..+..... ...++++|.||+|+..
T Consensus 74 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 74 MYY--RGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD 125 (170)
T ss_dssp HHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG
T ss_pred hhC--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccc
Confidence 233 356999999766543210011223344444312 2467899999999864
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.21 E-value=2.5e-11 Score=115.80 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=72.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCc-eeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~-Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
...++|+|+|.+|||||||+|+|++....... .++ +...........+ ..+.|+||||.... ...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~-- 80 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF--------RAV-- 80 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT--------CHH--
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCChHh--------hhh--
Confidence 34589999999999999999999987643321 121 1122222333444 57899999996322 111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+...... ..|+++|+||+|+..
T Consensus 81 -~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 81 -TRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEA 134 (179)
T ss_dssp -HHHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred -HHHHh--ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 22233 2469999997665432111122334444444322 478999999999863
No 43
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=6.6e-11 Score=115.45 Aligned_cols=121 Identities=20% Similarity=0.170 Sum_probs=72.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++...... ..+++...........+ ..+.|+||||.... ..+..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~- 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF--------PAMQR- 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC--------HHHHH-
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCChHHh--------HHHHH-
Confidence 3458999999999999999999997654322 11222222222223333 47899999997432 11111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++...........+..+.+..+.....|+++|+||+|+..
T Consensus 75 --~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 75 --LSI--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp --HHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred --Hhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 223 235999999776543211122234555555443223479999999999863
No 44
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.20 E-value=3.9e-11 Score=114.21 Aligned_cols=121 Identities=15% Similarity=0.047 Sum_probs=65.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.|++..........+.|.. .....+++ ..+.++||||..... ...+ .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~---~ 71 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLD------KSWS---Q 71 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC-------------CHH---H
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccc------hhhh---H
Confidence 458999999999999999999999876554433222222 22334555 478999999985320 0111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ...|++++|.+++....-......+..+.... .....|+++|+||+|+..
T Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 72 ESCL--QGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLAR 125 (175)
T ss_dssp HHTT--TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTT
T ss_pred Hhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhcc
Confidence 1222 35799999976654321001112223333321 112478999999999864
No 45
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.20 E-value=1.2e-10 Score=121.96 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcc
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a 192 (791)
...++|+|+|.+|||||||+|+|+|....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 34579999999999999999999998765
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.20 E-value=3.1e-11 Score=115.09 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=74.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.|+||||..... . . .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~-~---~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------S-L---I 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------G-G---S
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------H-H---H
Confidence 3489999999999999999999976543322 22233344444555666 479999999964321 1 1 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++...........+..+....+ ...|+++|+||+|+..
T Consensus 81 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 81 PSYI--RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGG
T ss_pred HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 1223 246999999766542211112234444444332 2478999999999864
No 47
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.20 E-value=8.4e-11 Score=111.48 Aligned_cols=116 Identities=15% Similarity=0.068 Sum_probs=75.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|+|++...... ..|.........+.+..+.|+||||..... . ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~---~~~ 69 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT----IPTIGFNVETVTYKNLKFQVWDLGGLTSIR--------P---YWR 69 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEEETTEEEEEEEECCCGGGG--------G---GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc----CCcCccceEEEEECCEEEEEEECCCChhhh--------H---HHH
Confidence 3458999999999999999999987654321 123334444556678999999999984321 0 112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++... .-......+....... ...|+++|+||+|+..
T Consensus 70 ~~~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 70 CYY--SNTDAVIYVVDSCDRD---RIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp GGC--TTCSEEEEEEETTCCT---THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 223 3679999996665432 1112333444443321 3579999999999864
No 48
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.20 E-value=8.6e-11 Score=114.52 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++........ ...+.+.......+.+ ..+.|+||||.... ... .
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~---~ 86 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE-ATIGVDFRERAVDIDGERIKIQLWDTAGQERF-------RKS---M 86 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC-CCCSCCEEEEEEEETTEEEEEEEEECCCSHHH-------HTT---T
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CCcceEEEEEEEEECCEEEEEEEEECCCchhh-------hhh---h
Confidence 345899999999999999999999765443221 1222233333444555 58999999996321 101 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+...+. ....++++|+||+|+..
T Consensus 87 ~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 87 VQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred hHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22334 457999999766543211112233444444431 22478999999999863
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.20 E-value=2.7e-11 Score=114.56 Aligned_cols=120 Identities=16% Similarity=-0.010 Sum_probs=60.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|||||||+|+|++.....+....+.|. ............+.++||||.... ..+ ...+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~--------~~~---~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGG--------RWL---PGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccc--------hhh---hhhh
Confidence 3799999999999999999999887665544323333 222222223357889999997532 111 1122
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
+ ...|++++|.+++...........+..+.... .....|+++|+||+|+...
T Consensus 70 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 70 M--AMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred h--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccc
Confidence 3 35699999976654321001112222232221 1124799999999998743
No 50
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.20 E-value=3.7e-11 Score=118.24 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=71.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++........ ...+........... +..+.|+||||.... .. .
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~---~ 73 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFV-STVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--------RT---I 73 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC-CCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HH---H
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-CccceeEEEEEEEECCeEEEEEEEECCCchhh--------cc---h
Confidence 445899999999999999999999876433211 111122222233334 458899999998422 11 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+.... ....|+++|+||+|+..
T Consensus 74 ~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 74 TTAYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMED 127 (203)
T ss_dssp HHTTG--GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTT
T ss_pred HHHhh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCc
Confidence 22333 35699999966643211001112333333322 12478999999999864
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.20 E-value=4.9e-11 Score=111.93 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=71.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++...... ..+++.........+.+. .+.|+||||.... .....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~--- 69 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF--------ASMRD--- 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHHH---
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCccc--CCCCcceeEEEEEEECCEEEEEEEEECCCchhh--------HHHHH---
Confidence 48999999999999999999997654332 223333333444455554 5899999997532 11111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. ..|++++|++++...........+..+.+... ....|+++|+||+|+..
T Consensus 70 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 70 LYIK--NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred HHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence 2232 35899999666532110011123333333322 12479999999999863
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.20 E-value=7.8e-11 Score=113.64 Aligned_cols=121 Identities=17% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEE-EEEeEEC-----------CeEEEEEeCCCCCCccccc
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR-EVKGSVN-----------GIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~-~~~~~~~-----------G~~l~LIDTPGl~d~~~~~ 231 (791)
+..++|+|+|.+|||||||+|+|++....... .+..+.+.. ....... ...+.|+||||....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---- 83 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF-ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---- 83 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc-ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH----
Confidence 45689999999999999999999976533211 111111222 2222333 358999999998321
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.. ....++ ..+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 84 ----~~---~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 ----RS---LTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp ----HH---HHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred ----HH---HHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 11 122333 467999999766543211111233444443321 12479999999999863
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.19 E-value=3.8e-11 Score=116.29 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC-----------------------------
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG----------------------------- 213 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G----------------------------- 213 (791)
...++|+|+|.+|||||||+|+|++..... ...+++ .........+.+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 346899999999999999999999876432 111222 223222233333
Q ss_pred ----------eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 003857 214 ----------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 283 (791)
Q Consensus 214 ----------~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~ 283 (791)
..+.|+||||..... . ....++ ..+|++++|++++...........+..+....
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~-------~----~~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--- 146 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYA-------S----IVPLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISS--- 146 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCT-------T----THHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---
T ss_pred cccccCccceeEEEEEECCCcHHHH-------H----HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---
Confidence 789999999964321 1 122234 35699999966654321001112233333332
Q ss_pred ccccEEEEEeccC
Q 003857 284 IWFNTILVMTHSS 296 (791)
Q Consensus 284 i~k~vIVVLTK~D 296 (791)
..|+++|+||+|
T Consensus 147 -~~piilv~NK~D 158 (208)
T 3clv_A 147 -NYIIILVANKID 158 (208)
T ss_dssp -CCEEEEEEECTT
T ss_pred -CCcEEEEEECCC
Confidence 279999999999
No 54
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.19 E-value=7.7e-11 Score=113.90 Aligned_cols=122 Identities=19% Similarity=0.194 Sum_probs=70.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+|+|.+|||||||+|+|++.. +.+...+..|.....+.. . .+.++||||+.+...-+....+........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999876 333333344444443332 2 78999999986542211111222223333333
Q ss_pred h--cCCCCEEEEEEeccCccC----------CCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 R--RSPPDIVLYFERLDLISM----------GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~--~~~~dvVLlV~~ld~~t~----------~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
. ...++++++|.+.+.... ...+..+++.+.. ...|+++|+||+|+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKI 135 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhcc
Confidence 3 235678888855432210 0001112222222 247899999999986
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.19 E-value=3.3e-11 Score=119.05 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=74.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++...... ..+..+.+.......+.+ ..+.|+||||...... .
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~--- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPS-FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT--------I--- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCS-SSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC--------C---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------H---
Confidence 3458999999999999999999997654322 222333345445556677 6899999999743210 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++...........+..+...... ..|+++|+||+|+.
T Consensus 86 ~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 138 (213)
T 3cph_A 86 TTAYY--RGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 138 (213)
T ss_dssp CHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred HHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence 12233 3579999997665432111112344445444322 47899999999983
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.19 E-value=4.1e-11 Score=115.52 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=72.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeE--EEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--VTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~--l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++.... ....+++.........+.+.. +.|+||||..... .+..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~-- 70 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMRD-- 70 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---C--------TTHH--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHH--------HHHH--
Confidence 3589999999999999999999986643 223345555555555666654 6789999975431 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++. .+|++++|++++...........+..+..... ....|+++|+||+|+.
T Consensus 71 -~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 71 -QYMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLP 122 (189)
T ss_dssp -HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSS
T ss_pred -HHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCc
Confidence 2222 35899999766543210011123333333321 2257999999999986
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=2.4e-11 Score=119.15 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=72.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCccc-ccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTE-TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~-vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
+..++|+|+|.+|||||||+|+|++..... +....+.|.....+.....+..+.|+||||..... .. .
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~ 89 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH--------SL---A 89 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG--------GG---T
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH--------hh---h
Confidence 345899999999999999999999876432 22222233333333333345789999999974321 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++...........+..+..... ...|+++|+||+|+.
T Consensus 90 ~~~~--~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 90 PMYY--RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLS 141 (192)
T ss_dssp HHHH--TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGG
T ss_pred HHhh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence 2233 356999999766543210011123333433321 247899999999986
No 58
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.19 E-value=3.5e-11 Score=115.43 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=71.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++........ ...+.........+. +..+.|+||||..... .. .
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~ 78 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SL---A 78 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC-CCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG--------GG---T
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCC-CCceeEEEEEEEEECCEEEEEEEEeCCCChhhh--------hh---h
Confidence 45899999999999999999999876543321 122222222233344 3589999999964321 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++...........+..+..... ...|+++|+||+|+..
T Consensus 79 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 79 PMYY--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLD 131 (181)
T ss_dssp HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred HHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 2223 357999999666432210111233334443321 2478999999999864
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.19 E-value=9.7e-11 Score=111.92 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=73.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++....... .+..+.........+++ ..+.|+||||.... .. ..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~---~~ 73 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL-FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF--------RS---LR 73 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG--------HH---HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEeCCCchhh--------hh---hH
Confidence 4589999999999999999999976533221 11222233344445566 48999999996321 11 12
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++...........+..+...... ....|+++|+||+|+.
T Consensus 74 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 74 TPFY--RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2333 4679999997665432111112344444444321 1247899999999986
No 60
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.19 E-value=1.7e-10 Score=112.75 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=74.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|.|++...... . ..|...........+..+.|+||||.... . ....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~---~~~~ 85 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--M-IPTVGFNMRKITKGNVTIKLWDIGGQPRF--------R---SMWE 85 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--C-CCCCSEEEEEEEETTEEEEEEEECCSHHH--------H---TTHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc--c-CCCCceeEEEEEeCCEEEEEEECCCCHhH--------H---HHHH
Confidence 3458999999999999999999997654321 1 12222223334567899999999997321 1 1122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 86 ~~~--~~~d~ii~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 86 RYC--RGVSAIVYMVDAADQE---KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHH--TTCSEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHH--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 334 4679999996664332 112333444444332 13578999999999863
No 61
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.19 E-value=5.6e-11 Score=111.65 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=70.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++..... ...+++.........+.+ ..+.|+||||.... .... .
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~---~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIR---D 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---C--------HHHH---H
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC--CCCCCcceEEEEEEEECCEEEEEEEEECCCcchh--------HHHH---H
Confidence 4899999999999999999999876322 223344333333445555 47899999997432 1121 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 71 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 71 NYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred HHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence 2232 35999999666543210011123334444322 12479999999999863
No 62
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.18 E-value=2.6e-11 Score=114.38 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=69.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCC-CceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ-PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~-~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.++|+|+|.+|||||||+|+|++.......... +.+...........+..+.|+||||.... ... ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~---~~~ 74 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY--------HSL---APM 74 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG--------GGG---HHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh--------hhh---hHH
Confidence 489999999999999999999976544332111 11222222222223568999999997432 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++...........+..+...... ..++++|.||+|+..
T Consensus 75 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 75 YY--RGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLAN 125 (170)
T ss_dssp HH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred hc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCcc
Confidence 33 4579999997665332100111233333333222 468889999999863
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.18 E-value=2.1e-11 Score=115.34 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=70.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.|+||||...... . .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~---~ 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSF-ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT--------I---T 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSC--------C---C
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh--------h---H
Confidence 3589999999999999999999986543221 11223234333444454 5789999999643210 0 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++...........+..+...... ..|+++|+||+|+.
T Consensus 70 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 121 (170)
T 1g16_A 70 TAYY--RGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 121 (170)
T ss_dssp HHHH--TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCT
T ss_pred HHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCC
Confidence 1223 3569999997665432111112344444444322 47899999999983
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.18 E-value=3.4e-11 Score=117.55 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
..+..++|+|+|.+|||||||+|+|++......... ..+.......... .+..+.|+||||..... .+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~- 90 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRT-TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR--------AI- 90 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCC-CSSEEEEEEEEEETTEEEEEEEEEESCCCTTC--------TT-
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-ccceeEEEEEEEECCEEEEEEEEeCCCchhhh--------hh-
Confidence 345568999999999999999999998765543221 1112222222223 34688999999985431 11
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+.... ....++++|+||+|+..
T Consensus 91 --~~~~~--~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 91 --TSAYY--RGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp --HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGG
T ss_pred --hHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccc
Confidence 12233 35799999966654321001112233333221 12478999999999863
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=114.52 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=70.9
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
....++|+|+|.+|||||||+|+|++........ +..+.+.......+++ ..+.|+||||.... ...
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~-- 91 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK-STVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSI-- 91 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHH--
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcHHH--------HHH--
Confidence 4456899999999999999999999876443321 1222334344445555 57899999997322 111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++. .+|++++|++++...........+..+..... ...++++|+||+|+..
T Consensus 92 -~~~~~~--~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 92 -TSAYYR--SAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp -HHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred -HHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 222332 35999999766543211111223344444322 2478999999999863
No 66
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.17 E-value=1.2e-10 Score=111.75 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=73.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++.... ....+++.........+.+ ..+.|+||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~--- 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIR--- 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHH---
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc--------HHHH---
Confidence 4589999999999999999999986632 2233444444444445555 47899999997532 1122
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 84 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 84 DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22232 35999999766543210011123334444322 12478999999999863
No 67
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.17 E-value=7.3e-11 Score=111.26 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=71.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++..... ...+++.........+. +..+.|+||||..... ... .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~---~ 69 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT--------AMR---D 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST--------THH---H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHH--------HHH---H
Confidence 4799999999999999999999864322 22233333322333333 4578999999975431 111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. .+|++++|.+++...........+..+..... ....|+++|+||+|+..
T Consensus 70 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 70 LYMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred HHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 2232 35899999766543211112234444444332 12478999999999863
No 68
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.17 E-value=9.9e-11 Score=114.20 Aligned_cols=120 Identities=9% Similarity=0.030 Sum_probs=73.7
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
......+|+|+|.+|||||||+|+|++.....+. ..+ |...........+..+.|+||||..... . .
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~---~ 79 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR--------G---L 79 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----C-CCC-CSSEEEEEEEETTEEEEEEEECCSGGGG--------G---G
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc-ccc-ccceeEEEEEeCCEEEEEEECCCCHhHH--------H---H
Confidence 3345689999999999999999999998765532 112 2223333445788999999999985321 0 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc---------ccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA---------IWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~---------i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++.... -..+...+....... ...++++|+||+|+..
T Consensus 80 ~~~~~--~~~d~ii~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 80 WETYY--DNIDAVIFVVDSSDHLR---LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp GGGGC--TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HHHHH--hcCCEEEEEEECCcHHH---HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 11233 46799999976654321 112223333333220 1479999999999874
No 69
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.17 E-value=3.6e-11 Score=113.94 Aligned_cols=119 Identities=12% Similarity=0.106 Sum_probs=69.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++....... .+..+.........+++ ..+.|+||||..+.. ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 72 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH-ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------ALG 72 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC-CCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC-CCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-----------hhH
Confidence 4589999999999999999999976533221 11222233333334444 478899999964321 011
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++...........+..+....+. ..|+++|+||+|+..
T Consensus 73 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 73 PIYY--RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEK 125 (170)
T ss_dssp CCSS--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGG
T ss_pred HHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence 1122 3679999997665432100111233344443322 378999999999864
No 70
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.17 E-value=2.8e-11 Score=143.38 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=73.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEE--------eE--------------------ECC-----
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK--------GS--------------------VNG----- 213 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~--------~~--------------------~~G----- 213 (791)
++|+|+|.+|+|||||+|+|+|...+.++.. ++|..+..+. .. +.+
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~-p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVN-PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCC-TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCC-CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 8999999999999999999999988877654 5553211110 00 011
Q ss_pred -------------------------eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCC
Q 003857 214 -------------------------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFS 268 (791)
Q Consensus 214 -------------------------~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~ 268 (791)
..++||||||+.+.. . ....+..++ ..+|+||||++.+... ...
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----~----~~~~~~~~i--~~aD~vL~Vvda~~~~-s~~ 217 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----A----RNELSLGYV--NNCHAILFVMRASQPC-TLG 217 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----T----CHHHHTHHH--HSSSEEEEEEETTSTT-CHH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----h----HHHHHHHHH--HhCCEEEEEEeCCCcc-chh
Confidence 468999999996531 1 112233444 3479999996654321 112
Q ss_pred cHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 269 DFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 269 D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+... +.+... ....++++|+||+|+..
T Consensus 218 e~~~---l~~~l~-~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 218 ERRY---LENYIK-GRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHH---HHHHTT-TSCCCEEEEEECGGGGG
T ss_pred HHHH---HHHHHH-hhCCCEEEEEECccccc
Confidence 2222 332222 12468999999999864
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.17 E-value=1e-10 Score=109.48 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=70.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++...... ..+++...........+ ..+.|+||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~--- 69 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE--CDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMRD--- 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC--------HHHH---
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc--cCCccceEEEEEEEECCEEEEEEEEECCCchhhh--------HHHH---
Confidence 47999999999999999999998653322 22333333333344444 467899999975431 1111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 70 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 70 QYMR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh
Confidence 2232 35899999666532210011123333333321 12479999999999874
No 72
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.16 E-value=2.1e-10 Score=112.50 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++.... ....+++.........+.+ ..+.|+||||.... ..+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~-- 79 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIR-- 79 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHH--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh--------HHHH--
Confidence 34589999999999999999999987632 2233444444344445566 47899999997543 1121
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 80 -~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 80 -DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 133 (206)
T ss_dssp -HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred -HHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence 22232 35899999766543210011123334444322 12479999999999864
No 73
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.16 E-value=5.5e-11 Score=125.54 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=78.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|||||||+|+|+|.. ..++.++++|.+........ +..+.|+||||....... ...+.+. ..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~--~~~e~v~---~~~ 75 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY--SPEAKVA---RDY 75 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS--SHHHHHH---HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC--ChHHHHH---HHH
Confidence 4799999999999999999999975 34555655665555444444 788999999999764211 1122222 234
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+....+|++++|++.+... ....+...+.+ ...|+++|+||+|+..
T Consensus 76 ~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 76 LLSQRADSILNVVDATNLE---RNLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred HhcCCCCEEEEEecCCchH---hHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 4334789999996554321 11222233332 2489999999999763
No 74
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.16 E-value=1.4e-10 Score=112.42 Aligned_cols=116 Identities=8% Similarity=0.025 Sum_probs=74.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|+|++..........+.+. ....+++..+.|+||||...... ...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 83 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS-----------SWN 83 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTC-----------GGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHH-----------HHH
Confidence 345899999999999999999999877633332222222 23345789999999999843210 112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++... .-..+...+...... ....++++|+||+|+..
T Consensus 84 ~~~--~~~d~ii~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 84 TYY--TNTEFVIVVVDSTDRE---RISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGG--TTCCEEEEEEETTCTT---THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 233 4679999996665431 112333344444322 23578999999999863
No 75
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.16 E-value=1.1e-10 Score=111.40 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=73.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++.... ....+++.........+++ ..+.|+||||...... +.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~-- 74 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA--------MR-- 74 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC--------CH--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH--------HH--
Confidence 34589999999999999999999987432 2333444444334455666 4788999999754311 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 75 -~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 75 -EQYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp -HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred -HHHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 11222 35899999766543210001122223322221 12478999999999863
No 76
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.16 E-value=6e-11 Score=115.75 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=74.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++...+... . ..|.........+++..+.|+||||...... ....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~~ 86 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN-----------LWEH 86 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHH-----------HHHH
Confidence 4589999999999999999999987643332 2 2344455555667789999999999754310 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc----ccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA----IWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~----i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++.... -..+...+....... ...++++|+||+|+..
T Consensus 87 ~~--~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 87 YY--KEGQAIIFVIDSSDRLR---MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GG--GGCSEEEEEEETTCHHH---HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HH--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 33 35699999966543210 112223333332211 2579999999999863
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.16 E-value=6.6e-11 Score=115.35 Aligned_cols=120 Identities=14% Similarity=0.024 Sum_probs=72.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++........ ...+.+......... +..+.|+||||...... .
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 87 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFV-STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-----------I 87 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC-CCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------S
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcC-CceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------h
Confidence 345899999999999999999999876443211 111222222222333 45899999999754311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ...++++|+||+|+..
T Consensus 88 ~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 88 TTAYY--RGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLED 141 (189)
T ss_dssp GGGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccc
Confidence 12233 457999999766543211112234444444321 2478999999999863
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.16 E-value=7.3e-11 Score=111.38 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=71.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
++|+|+|.+|||||||+|+|++...... .+ |...........+..+.|+||||.... ... ...++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~---~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~~~~~ 65 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT---IP-TIGFNVETVEYKNISFTVWDVGGQDKI--------RPL---WRHYF 65 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC---CC-CSSCCEEEEECSSCEEEEEECCCCGGG--------HHH---HHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc---cC-cCceeEEEEEECCEEEEEEEcCCChhh--------HHH---HHHHh
Confidence 4899999999999999999987553321 12 332333344557889999999998421 111 22233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 66 --~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 66 --QNTQGLIFVVDSNDRE---RVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp --TTCSEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred --ccCCEEEEEEECCCHH---HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 4679999996665432 111233444444322 12478999999999863
No 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.15 E-value=2.8e-11 Score=118.73 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=49.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEEEeEEC----CeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVN----GIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~~~~~~----G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
..++|+|+|.+|||||||+|+|++..........+++. +.......+. ...+.|+||||.... .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~ 87 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY-----------K 87 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-----------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-----------H
Confidence 35899999999999999999999874333333323332 2333444555 358999999998321 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l~ 299 (791)
.....++ ..+|++++|++++...........+..+...... ....|+++|+||+|+..
T Consensus 88 ~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 88 EQISQYW--NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHSTTC--CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHH--hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 1122223 3679999997665432100111233334333220 02478999999999864
No 80
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=3.5e-11 Score=134.75 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccc--hhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~--~~~n~~i~~~ 241 (791)
...++|+|+|++|||||||+|.|+|.....++..+++|.+.......++|.++.++||||+....... ..........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 34689999999999999999999999888888776777777777778899999999999985431100 0000000111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+ .++ ..+|++++|+++.... ...+..+...+.. ..+++++|+||+|+..
T Consensus 258 ~-~~i--~~ad~vllv~d~~~~~-~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 258 V-DSI--EKADVVVIVLDATQGI-TRQDQRMAGLMER-----RGRASVVVFNKWDLVV 306 (439)
T ss_dssp H-HHH--HHCSEEEEEEETTTCC-CHHHHHHHHHHHH-----TTCEEEEEEECGGGST
T ss_pred H-HHH--hhCCEEEEEEeCCCCC-CHHHHHHHHHHHH-----cCCCEEEEEECccCCC
Confidence 1 123 2359999996554321 1123334443333 2479999999999873
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.15 E-value=5.9e-11 Score=111.97 Aligned_cols=118 Identities=17% Similarity=0.047 Sum_probs=72.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.|+||||...... . .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~---~ 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY-KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA--------I---T 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS-SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC--------C---C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH--------H---H
Confidence 4589999999999999999999986543221 11122233333444454 4889999999643210 0 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++...........+..+.... ...|+++|+||+|+..
T Consensus 72 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 72 KAYY--RGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD 123 (168)
T ss_dssp HHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG
T ss_pred HHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCc
Confidence 1223 35799999976654321111123334444433 2479999999999863
No 82
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.15 E-value=1.5e-10 Score=111.40 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=71.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++.... ....+++..........++ ..+.|+||||....... .
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF-----------P 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-----------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH-----------H
Confidence 3589999999999999999999965522 2233444433344445566 56799999998653210 0
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++.......-...+..+.+.+. ....|+++|+||+|+..
T Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 72 QTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp GGGT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT
T ss_pred HHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 1122 357999999766543210011122233333322 12478999999999863
No 83
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.15 E-value=6.2e-11 Score=117.32 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=69.9
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
.+..++|+|+|.+|||||||+|+|++........ +..+.+.......+.+ ..+.|+||||..... .
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-----------~ 89 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN-HTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR-----------S 89 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHS-----------C
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCC-CcccceeEEEEEEECCeeeEEEEEcCCCcHhHH-----------H
Confidence 3456899999999999999999999876443321 1222233334445566 689999999963211 0
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
....++ ..+|++++|++++...........+..+..... ...++++|+||+|+.
T Consensus 90 ~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 90 VTRSYY--RGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLD 143 (200)
T ss_dssp CCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGG
T ss_pred HHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcc
Confidence 112233 357999999766543211111233334443322 247899999999985
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.15 E-value=4.5e-11 Score=119.15 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=71.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++...........++...........+ ..+.|+||||...... ..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~-- 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV--------LK-- 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC--------CC--
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch--------HH--
Confidence 34589999999999999999999976543322111222222111112122 6799999999753311 00
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++...........+..+...... ..++++|+||+|+..
T Consensus 79 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 79 -DVYY--IGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN 131 (218)
T ss_dssp -HHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred -HHHh--hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence 1122 3579999997665432111222344555554432 378999999999863
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=3.3e-10 Score=110.19 Aligned_cols=114 Identities=8% Similarity=0.020 Sum_probs=70.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|||||||+|+|++........ |.........+++..+.|+||||...... . ...+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~~~~ 80 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS--------S---WNTY 80 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEEC----CSCSSCEEEEETTEEEEEEECCC----CG--------G---GHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CCccceEEEEECCEEEEEEECCCCHhHHH--------H---HHHH
Confidence 4899999999999999999999766543322 11111223345789999999999854310 1 1222
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
+ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 81 ~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 81 Y--TNTEFVIVVVDSTDRE---RISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp H--TTCCEEEEEEETTCTT---THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred h--cCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 3 4579999996665432 112233344444322 13579999999999863
No 86
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.14 E-value=1.2e-10 Score=111.28 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=76.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
...++|+|+|.+|||||||+|+|++..... ...+..|.+.......+++..+.|+||||....... ..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM-----------RA 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS-----------CC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH-----------HH
Confidence 345899999999999999999999876443 222233434444455678899999999998543210 01
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++... ....++.+..... ...|+++|+||+|+..
T Consensus 74 ~~~--~~~d~~i~v~d~~~~~----~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 74 RGA--QVTDIVILVVAADDGV----MPQTVEAINHAKA--ANVPIIVAINKMDKPE 121 (178)
T ss_dssp SSC--CCCCEEEEEEETTCCC----CHHHHHHHHHHGG--GSCCEEEEEETTTSSC
T ss_pred HHH--hhCCEEEEEEECCCCC----cHHHHHHHHHHHh--CCCCEEEEEECccCCc
Confidence 112 4679999996654321 1233444443322 2478999999999863
No 87
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.14 E-value=2.4e-10 Score=124.37 Aligned_cols=126 Identities=20% Similarity=0.173 Sum_probs=71.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc-----cCCCCceeEEE------------------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET-----DAFQPATDCIR------------------------------------ 205 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v-----s~~~~~Tt~~~------------------------------------ 205 (791)
.+|+|+|.+|||||||+|+|+|...... +.. ++.....
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~-p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR-PLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCS-CEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCccccc-ceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999876522 211 1100000
Q ss_pred ----------EEEeE-ECCeEEEEEeCCCCCCccccchhh--hHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHH
Q 003857 206 ----------EVKGS-VNGIKVTFIDTPGFLPSCVRNVKR--NRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPL 272 (791)
Q Consensus 206 ----------~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~--n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~l 272 (791)
..... ..+.+++||||||+......++.. .+.+...+..++. ...++||+|++.+.. ....+ .
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~-~~~~~--~ 186 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSD-LANSD--A 186 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSC-GGGCH--H
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCc-cchhH--H
Confidence 00001 124689999999998643211111 1233344445553 334566777544321 11122 2
Q ss_pred HHHHHHHhcccccccEEEEEeccCCCC
Q 003857 273 LKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 273 lk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+.+..... ...++++|+||+|+..
T Consensus 187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 187 LKVAKEVDP--QGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHHHCT--TCTTEEEEEECGGGSC
T ss_pred HHHHHHhCc--CCCceEEEeccccccC
Confidence 223333321 2479999999999874
No 88
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.13 E-value=6.9e-11 Score=115.58 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++......... ..+.+.......+++ ..+.|+||||...... +
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 86 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS--------I--- 86 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC--------C---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEEECCEEEEEEEEECCCchhhhh--------h---
Confidence 4568999999999999999999998765443221 222233333344555 5889999999643210 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ...++++|+||+|+..
T Consensus 87 ~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 87 TRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES 140 (191)
T ss_dssp CHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC
Confidence 12233 357999999766543211111233444444322 2478999999999863
No 89
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=3.7e-11 Score=117.55 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=74.0
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCccccc-CCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.+..++|+|+|.+|||||||+|+|++....... .....+.....+.....+..+.|+||||... ... .
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~---~ 88 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER--------YRT---I 88 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH--------CHH---H
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH--------HHH---H
Confidence 345689999999999999999999976533221 1112222333333333567899999999521 111 2
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++...........+..+..... ...|+++|+||+|+.
T Consensus 89 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 89 TTAYY--RGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCG
T ss_pred HHHHH--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCc
Confidence 22334 457999999766543211112234444444322 247899999999985
No 90
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=3.9e-11 Score=131.52 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=62.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCC------CceeEEE--EEEeEECCe--EEEEEeCCCCCCccccc---
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQ------PATDCIR--EVKGSVNGI--KVTFIDTPGFLPSCVRN--- 231 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~------~~Tt~~~--~~~~~~~G~--~l~LIDTPGl~d~~~~~--- 231 (791)
..++|+|+|.+|+|||||+|+|++...+...... ..|..+. .+.....+. .+.|+||||+++.....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3589999999999999999999987665443211 1233222 222333454 78999999997652110
Q ss_pred hhhhHHHHHHHHHHH-----------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 232 VKRNRKIMLSVKKFI-----------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l-----------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
......+...+..++ ...++|+++|++..........+..+++.+ . ...|+|+|+||+|+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence 001111111222222 123567888885432232222222333332 2 2479999999999874
No 91
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=115.10 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=67.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..++|+|+|.+|||||||+|+|++...... ....+.+... ....+.+ ..+.|+||||.... ...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~--------~~~--- 93 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQERF--------RSI--- 93 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEETTEEEEEEEEECTTCTTC--------HHH---
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEECCEEEEEEEEECCCCcch--------hhh---
Confidence 458999999999999999999998653322 1111112222 2233444 57999999997432 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++. .+|++++|++++...........+..+...... ..|+++|+||+|+.
T Consensus 94 ~~~~~~--~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 94 AKSYFR--KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred HHHHHh--hCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 222332 359999997665332111112334444443221 47899999999985
No 92
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.13 E-value=2.2e-10 Score=113.63 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCc-eeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~-Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
.+..++|+|+|.+|||||||+|.|++...... ..++ +.+.......+++ ..+.|+||||.... ..+
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~- 94 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF--------RTI- 94 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGG--------HHH-
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH--------HHH-
Confidence 34568999999999999999999987653321 1111 1223334445566 58999999997321 111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ...++++|.||+|+..
T Consensus 95 --~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 95 --TQSYY--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE 148 (201)
T ss_dssp --HHHHH--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred --HHHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc
Confidence 22334 457999999766543211111234444444322 2478999999999863
No 93
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.13 E-value=8.9e-11 Score=115.99 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=73.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.|+||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY-ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC-CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH-----------
Confidence 34589999999999999999999986643321 12223334334445555 48999999997543110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ...++++|+||+|+..
T Consensus 74 ~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 74 TSSYY--RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKD 127 (206)
T ss_dssp CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred HHHhc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 11223 457999999766543210011122333433322 2478999999999874
No 94
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.13 E-value=2.2e-10 Score=125.84 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=71.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|++|||||||+|.|+|... .+.....+|.+.......+.|.++.++||||+...... ...+.+.. ....+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~--~lve~f~~-tl~~~- 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP--QIVDAFFV-TLSEA- 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCG--GGHHHHHH-HHHGG-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH--HHHHHHHH-HHHHH-
Confidence 499999999999999999999874 44444456666666667778999999999998542111 11122222 22222
Q ss_pred cCCCCEEEEEEeccCccC-CCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 248 RSPPDIVLYFERLDLISM-GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~-~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..+|++++|++++.... .......+..+.+.++. ...++++|+||+|+..
T Consensus 256 -~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~-~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 256 -KYSDALILVIDSTFSENLLIETLQSSFEILREIGV-SGKPILVTLNKIDKIN 306 (364)
T ss_dssp -GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC-CSCCEEEEEECGGGCC
T ss_pred -HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc-CCCCEEEEEECCCCCC
Confidence 35799999966543210 00111111222222332 1478999999999863
No 95
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.12 E-value=8.9e-11 Score=115.94 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=69.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEe--EECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG--SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~--~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++....... .+++........ ...+..+.|+||||.......
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL----------- 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEECCEEEEEEEEECCCccchHHH-----------
Confidence 45689999999999999999999987654322 233332222222 234578899999997543210
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++.... -..+...+...... ....|+++|+||+|+..
T Consensus 89 ~~~~~--~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 89 PYSFI--IGVHGYVLVYSVTSLHS---FQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CGGGT--TTCCEEEEEEETTCHHH---HHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred HHHHH--hcCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 11223 35799999966654321 11122222222211 12478999999999863
No 96
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.12 E-value=6.6e-11 Score=115.33 Aligned_cols=118 Identities=13% Similarity=0.174 Sum_probs=68.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|+|.+|||||||+|+|++...... ....++++. ...+..+.|+||||...... .....+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 113 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------DYDGSGVTLVDFPGHVKLRY-------KLSDYLK 113 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSC-------CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------eecCCeEEEEECCCCchHHH-------HHHHHHH
Confidence 458999999999999999999998763321 111122211 12567899999999965421 1112223
Q ss_pred HHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcc-----cccccEEEEEeccCCCCC
Q 003857 244 KFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGT-----AIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld-~~t~~~~D~~llk~L~~~fg~-----~i~k~vIVVLTK~D~l~p 300 (791)
..+ ..+|+++||++++ ... ....+...+...+.. ....|+++|+||+|+...
T Consensus 114 ~~~--~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 114 TRA--KFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHG--GGEEEEEEEEETTCCHH---HHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred hhc--ccCCEEEEEEECCCCch---hHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 222 2468999996665 111 111222333333211 124789999999998743
No 97
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.12 E-value=1.3e-10 Score=112.95 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=70.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++..... ...+++.........+.+ ..+.|+||||.... .. ..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~---~~ 86 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SA---MR 86 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHH--------HH---HH
Confidence 45899999999999999999999865332 223444444344445555 45899999997432 11 11
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++...........+..+..... ....++++|+||+|+..
T Consensus 87 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 87 DQYM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ---C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred HHhh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence 2233 357999999666543210011123333433321 12479999999999874
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.12 E-value=8.5e-10 Score=107.41 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=73.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|.|.+.....+.. |.........+++..+.++||||.... ... ...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~---~~~ 79 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI--------RPY---WRS 79 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG--------HHH---HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHH--------HHH---HHH
Confidence 45899999999999999999999876443322 222223344567899999999997421 111 223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|.+++... .-..+...+.+.+.. ....|+++|.||+|+..
T Consensus 80 ~~--~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 80 YF--ENTDILIYVIDSADRK---RFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HH--TTCSEEEEEEETTCGG---GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred Hh--CCCCEEEEEEECcCHH---HHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 34 4579999996654321 111233344444322 12479999999999863
No 99
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.12 E-value=1.7e-10 Score=123.24 Aligned_cols=123 Identities=11% Similarity=0.123 Sum_probs=78.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CCeEEEEEeCCCCCCccccchhhhHHHH-HHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIM-LSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G~~l~LIDTPGl~d~~~~~~~~n~~i~-~~ik 243 (791)
.++|+|+|.+|||||||+|.+++.....++.....|.........+ ++..+.|+||||.... .+... ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 75 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQKD 75 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHHH
Confidence 4799999999999999999999886555544446666666555554 5789999999997321 11111 1112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|++++.... ..+. ...+.+..........|+++|+||+|+.
T Consensus 76 ~~~--~~ad~vi~V~D~t~~~s-~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 76 HIF--QMVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp HHH--TTCSEEEEEEETTCSCH-HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred HHh--ccCCEEEEEEECCChhh-HHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 223 36799999966654321 0111 1223333332112247999999999986
No 100
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.12 E-value=2.4e-10 Score=108.38 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=66.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++......... +.|.+.......+.+ ..+.++||||..... ..+...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~-- 71 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-ENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG-------GWLQDH-- 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC---------------CH--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccC-CCcCCeeeEEEEECCeEEEEEEEECCCccccc-------hhhhhh--
Confidence 37999999999999999999997654444322 333444444445555 467899999995431 101111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++. .+|++++|.+++...........+..+..... ....|+++|.||+|+.
T Consensus 72 -~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 72 -CLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLA 122 (169)
T ss_dssp -HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCG
T ss_pred -hhc--cCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchh
Confidence 121 35999999776543211111233333333321 1147999999999986
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.11 E-value=8.9e-11 Score=113.00 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=71.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++......... .........+.+..+.++||||...... ....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 81 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPT----IGFNVETLSYKNLKLNVWDLGGQTSIRP-----------YWRC 81 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS----TTCCEEEEEETTEEEEEEEEC----CCT-----------TGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCc----CccceEEEEECCEEEEEEECCCCHhHHH-----------HHHH
Confidence 358999999999999999999997665333221 1122233455789999999999864311 0112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 82 ~~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 82 YY--ADTAAVIFVVDSTDKD---RMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TT--TTEEEEEEEEETTCTT---THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred Hh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 23 3579999996654331 122334445554432 23579999999999863
No 102
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.11 E-value=2.7e-10 Score=124.08 Aligned_cols=127 Identities=21% Similarity=0.166 Sum_probs=73.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEE----------------------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIRE---------------------------------------- 206 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~---------------------------------------- 206 (791)
.+|+|||.+||||||++|+|+|......+.. .+|+....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4999999999999999999999765443321 22221110
Q ss_pred --------------EEe-EECCeEEEEEeCCCCCCccccc--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc
Q 003857 207 --------------VKG-SVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD 269 (791)
Q Consensus 207 --------------~~~-~~~G~~l~LIDTPGl~d~~~~~--~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D 269 (791)
... ...+..++||||||+......+ ......+...+..++ ..+|++++|+...... ...
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~--~~~ 189 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQD--LAT 189 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSC--GGG
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCC--cCC
Confidence 000 1124578999999998753211 112233334444555 3679888885332211 111
Q ss_pred HHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 270 FPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 270 ~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
...++.+... .. ...++++|+||+|+..+
T Consensus 190 ~~~~~l~~~~-~~-~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 SDAIKISREV-DP-SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CHHHHHHHHS-CT-TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHHh-cc-cCCCEEEEEeCCccCCC
Confidence 2334333333 21 24789999999999854
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.11 E-value=2.7e-10 Score=113.21 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=70.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC---CeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~---G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
.++|+|+|.+|||||||+|+|++..... ...+.+..... ..++ +..+.|+||||.... ...+ .
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~ 72 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRD--TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL-------RFQL---L 72 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCC--BCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH-------HHHH---H
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccc--ccCCcceeeEE--EEecCCCccEEEEEECCCChhH-------HHHH---H
Confidence 4899999999999999999999766322 22233333333 4444 678999999998321 1111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc----ccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG----TAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg----~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|+++||++++... .......+.+...+. .....|+++|+||+|+..
T Consensus 73 ~~~~--~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 73 DRFK--SSARAVVFVVDSAAFQ--REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHG--GGEEEEEEEEETTTHH--HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHH--hhCCEEEEEEECCCcC--HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 2233 3569999996654321 011233333333221 122479999999999874
No 104
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.11 E-value=6.4e-11 Score=114.25 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++..... ...+..+.+.......+++ ..+.|+||||..... ..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 73 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----------TI 73 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh-----------hh
Confidence 345899999999999999999999754321 1111122234444455666 689999999974321 01
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ...|+++|+||+|+..
T Consensus 74 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 74 TTAYY--RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND 127 (183)
T ss_dssp CCTTT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred HHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence 11222 367999999766543210011123333333322 2478999999999863
No 105
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.11 E-value=1.2e-10 Score=111.24 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=68.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC---CeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~---G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..++|+|+|.+|||||||+|+|++........ +..+.+.......+. ...+.|+||||.... . ..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~---~~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYK-ATIGADFLTKEVTVDGDKVATMQVWDTAGQERF--------Q---SL 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccC-CccceEEEEEEEEEcCCcEEEEEEEECCCChHh--------h---hh
Confidence 45899999999999999999999865432211 111222333333333 368999999996322 1 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc--ccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg--~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++...........+..+..... .....|+++|+||+|+.
T Consensus 75 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 75 GVAFY--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp --CCS--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred hHHHh--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 12223 367999999766543211112233444444332 11347999999999985
No 106
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=5.7e-11 Score=115.31 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=69.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEEC--CeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~--G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++........ +..+.+.......+. +..+.|+||||..... .. .
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~ 81 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA-ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR--------TL---T 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC--------CS---H
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCC-CccceEEEEEEEEECCeEEEEEEEeCCCchhhh--------hh---h
Confidence 35899999999999999999999865432211 111222222233344 3678999999974321 01 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++...........+..+..... ....++++|+||+|+.
T Consensus 82 ~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 82 PSYY--RGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE 134 (195)
T ss_dssp HHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS
T ss_pred HHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc
Confidence 2233 357999999666543210011122222222111 1247899999999984
No 107
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.11 E-value=5.7e-11 Score=137.17 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=74.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcc--cccCCCCceeEEEEEEeE-------------------------------
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQPATDCIREVKGS------------------------------- 210 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a--~vs~~~~~Tt~~~~~~~~------------------------------- 210 (791)
...++|+|+|.+|||||||||+|+|.... .++.. ++|+....+...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~-p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPE-PTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSS-CCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCC-CccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 44589999999999999999999998875 34443 555443222110
Q ss_pred ------ECC---eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 003857 211 ------VNG---IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 281 (791)
Q Consensus 211 ------~~G---~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg 281 (791)
+.+ ..++||||||+.+...............+..++ ..+|+||||++.........+..+++.+..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--- 216 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRG--- 216 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence 000 368999999997631100000000112233334 246999999666543222223333333322
Q ss_pred ccccccEEEEEeccCCCC
Q 003857 282 TAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 282 ~~i~k~vIVVLTK~D~l~ 299 (791)
...++++|+||+|+..
T Consensus 217 --~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVE 232 (550)
T ss_dssp --CGGGEEEEEECGGGSC
T ss_pred --cCCCEEEEEECCCccC
Confidence 2478999999999873
No 108
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.11 E-value=1.9e-10 Score=110.02 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=71.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC---eEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG---IKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G---~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
..++|+|+|.+|||||||+|+|++....... .+++ .+.......+.+ ..+.|+||||..... ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~-- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG--------KM-- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHH--HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC--------TT--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc--------ch--
Confidence 4589999999999999999999986543211 1121 234344445555 789999999975331 11
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++...........+..+..........+ +++|+||+|+.
T Consensus 73 -~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 73 -LDKYI--YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp -HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred -hhHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 12233 457999999766543211111233344444321111244 78999999986
No 109
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.10 E-value=4.3e-10 Score=110.70 Aligned_cols=115 Identities=10% Similarity=0.019 Sum_probs=70.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++...... ..|...........+..+.|+||||..... .. ...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~~~ 92 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNICFTVWDVGGQDKIR--------PL---WRH 92 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE----EEETTEEEEEEEETTEEEEEEECC-----C--------TT---HHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc----CCcCceeEEEEEECCEEEEEEECCCCHhHH--------HH---HHH
Confidence 358999999999999999999987654321 113333344456688999999999985321 01 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 93 ~~--~~~d~iilv~D~~~~~---s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 93 YF--QNTQGLIFVVDSNDRE---RVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HH--HTCCEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred Hh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 23 2569999996665332 111233344443321 12478999999999853
No 110
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.10 E-value=5.8e-10 Score=107.49 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=72.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeE--EEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--VTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~--l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++..... ...+++...........+.. +.|+||||..... .+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~-- 83 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS--------AMR-- 83 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC--------SSH--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH--------HHH--
Confidence 346899999999999999999999764332 22344444334444556654 5669999974321 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 84 -~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 84 -EQYMR--TGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH 137 (183)
T ss_dssp -HHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred -HHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence 12232 35999999766543211111233334433322 22478999999999864
No 111
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=2.4e-10 Score=112.14 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=71.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++...... ..+++.........+.+ ..+.|+||||.... .. ..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~---~~ 93 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQEDT---------IQ---RE 93 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC---------HH---HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCcc---------cc---hh
Confidence 48999999999999999999998654332 22333222233334444 57899999998641 11 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. .+|++++|++++...........+..+..... ....|+++|+||+|+..
T Consensus 94 ~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 94 GHMR--WGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred hhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence 2232 35999999766543211111233444444322 12478999999999863
No 112
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=3e-10 Score=113.44 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=73.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++...... ..+..+.+.......+++ ..+.|+||||.... .. .
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~---~ 91 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF--------RS---I 91 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HH---H
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HH---H
Confidence 4568999999999999999999997653322 111222344444455666 47899999996321 11 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++...........+..+..... ...++++|.||+|+.
T Consensus 92 ~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 92 TQSYY--RSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLA 144 (201)
T ss_dssp HGGGS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGG
T ss_pred HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCc
Confidence 22233 467999999666533210111233444444322 247899999999986
No 113
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.09 E-value=8e-11 Score=117.96 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=74.6
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhh-CCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIF-DQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLl-G~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
.....++|+|+|.+|||||||+|+++ +.....+....+.|.....+.....+..+.|+||||...... +
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~-- 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG--------L-- 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC--------C--
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH--------H--
Confidence 34456899999999999999999955 433333333333444444444333457899999999643210 0
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ..|+++|+||+|+..
T Consensus 81 -~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 81 -RDGYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp -CHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred -HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 11223 357999999766543211111234444444322 479999999999863
No 114
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.09 E-value=1.5e-10 Score=113.90 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=73.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++........ ...+.+.......+.+ ..+.|+||||...... ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-----------LG 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC-CCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-----------SC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCC-CcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-----------hH
Confidence 45899999999999999999999876443221 1222334444444444 5899999999643210 01
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++...........+..+...... ....|+++|+||+|+.
T Consensus 75 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 75 VAFY--RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHH--hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 1223 3579999997664332101112333444443321 1247899999999986
No 115
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.09 E-value=2.8e-10 Score=110.65 Aligned_cols=115 Identities=15% Similarity=0.056 Sum_probs=73.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++....... + |...........+..+.|+||||....... ...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----------~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTV---P-TVGVNLETLQYKNISFEVWDLGGQTGVRPY-----------WRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEEC---S-STTCCEEEEEETTEEEEEEEECCSSSSCCC-----------CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcC---C-CCceEEEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 3489999999999999999999876543321 2 222223334557899999999998543110 111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++... .-..+...+...+.. ....|+++|+||+|+..
T Consensus 86 ~~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 86 YF--SDTDAVIYVVDSTDRD---RMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp SS--TTCCEEEEEEETTCCT---THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred Hh--hcCCEEEEEEeCCCHH---HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 22 3679999996665332 112333444444332 12478999999999864
No 116
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.07 E-value=2.2e-10 Score=112.08 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=72.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++.... ....+++.........+.+. .+.|+||||..... . .
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~---~ 87 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD--------R---L 87 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT--------T---T
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH--------H---H
Confidence 45689999999999999999999987632 22234443333334455554 56999999963321 0 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++.... ..+ ...+..+.... ...|+++|.||+|+..
T Consensus 88 ~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 88 RPLSY--ADSDVVLLCFAVNNRTS-FDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCC
T ss_pred hHhhc--cCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 11122 36799999976654321 011 12333333332 1378999999999874
No 117
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.06 E-value=9e-10 Score=131.10 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=79.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEE--------------------------------------
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 208 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~-------------------------------------- 208 (791)
.+|+|+|.+|+||||++|+|+|.....++.. .+|+.+..+.
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 6999999999999999999999876555432 3443221111
Q ss_pred -------------eEE-CCeEEEEEeCCCCCCccccchh--hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcH-H
Q 003857 209 -------------GSV-NGIKVTFIDTPGFLPSCVRNVK--RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDF-P 271 (791)
Q Consensus 209 -------------~~~-~G~~l~LIDTPGl~d~~~~~~~--~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~-~ 271 (791)
... ....++||||||+......++. ....+.+.+..++. ..+|+||+|++.+.. ....+. .
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~-~~~~d~l~ 208 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSD-LANSDALK 208 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSC-SSSCHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCC-cchhHHHH
Confidence 111 2346899999999874321111 11334444555554 567999999555432 122333 3
Q ss_pred HHHHHHHHhcccccccEEEEEeccCCCCCC
Q 003857 272 LLKLMTEVFGTAIWFNTILVMTHSSSTLPE 301 (791)
Q Consensus 272 llk~L~~~fg~~i~k~vIVVLTK~D~l~pd 301 (791)
+++.+.. .+.++++|+||+|++.+.
T Consensus 209 ll~~L~~-----~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 209 IAKEVDP-----QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHCT-----TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHh-----cCCCEEEEEeCcccCCcc
Confidence 4444432 257999999999998543
No 118
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.06 E-value=1.4e-09 Score=122.21 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccC------------------------------CCCceeEEEEEEeEECC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNG 213 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~------------------------------~~~~Tt~~~~~~~~~~G 213 (791)
...++|+++|.+|+|||||+|.|++........ ..+.|.+.........+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 345899999999999999999997653322211 12356666666677788
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC------CCCcHHHHHHHHHHhccccccc
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM------GFSDFPLLKLMTEVFGTAIWFN 287 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~------~~~D~~llk~L~~~fg~~i~k~ 287 (791)
+.++||||||..+. ...+...+ ..+|++|+|++++.... .....+.+..+.. . ..+
T Consensus 95 ~~~~iiDTPGh~~f-----------~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~----~v~ 156 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-----------VPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A----GVK 156 (439)
T ss_pred eEEEEEECCChHHH-----------HHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c----CCC
Confidence 99999999997422 12222223 35799999966543210 0123333333322 2 244
Q ss_pred -EEEEEeccCCCC
Q 003857 288 -TILVMTHSSSTL 299 (791)
Q Consensus 288 -vIVVLTK~D~l~ 299 (791)
+++|+||+|+..
T Consensus 157 ~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 HLIVLINKMDDPT 169 (439)
T ss_pred eEEEEeecCCCcc
Confidence 899999999863
No 119
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.06 E-value=4.5e-10 Score=111.83 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEEC------------CeEEEEEeCCCCCCccc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN------------GIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~------------G~~l~LIDTPGl~d~~~ 229 (791)
.+..++|+|+|.+|||||||+|+|++...... ..+++ .+.......+. ...+.|+||||...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--- 96 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPK--FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER--- 96 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCE--EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH---
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcC--CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh---
Confidence 34568999999999999999999998654211 11111 11222222222 46899999999521
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 299 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l~ 299 (791)
.......++ ..+|+++||++++... ....+..++....... ...++++|+||+|+..
T Consensus 97 --------~~~~~~~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 97 --------FRSLTTAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp --------HHHHHHHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred --------HHhHHHHHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 112223334 4579999996654321 1112222333322211 3578999999999863
No 120
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.06 E-value=3.1e-10 Score=111.48 Aligned_cols=117 Identities=19% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|.|++... .....+++.........+++. .+.|+||||...... +
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK--------L--- 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS--------S---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH--------H---
Confidence 3458999999999999999999998762 223334454444445566664 667999999864311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++.... ..+. .++..+..... ..|+++|+||+|+..
T Consensus 85 ~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 85 RPLCY--TNTDIFLLCFSVVSPSS-FQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp GGGGG--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred hHhhc--CCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 11223 46799999976654321 0111 23333443322 479999999999863
No 121
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.05 E-value=6e-10 Score=106.92 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=69.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.+++...... .+++.........+++ ..+.|+||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVL---EKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCC---SSCSSSEEEEEEEETTEEEEEEEEECSSSCC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCc---CCCcceeEEEEEEECCEEEEEEEEECCCCch----------------
Confidence 358999999999999999999998654432 2322222233344555 4678999999742
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l 298 (791)
..++. .+|++++|.+++...........++.+...... ....|+++|.||+|+.
T Consensus 67 ~~~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 AKFSG--WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred hHHHH--hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 11222 359999997665432100111222234443221 1247899999999985
No 122
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=122.05 Aligned_cols=129 Identities=27% Similarity=0.403 Sum_probs=71.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCC------CCceeEEEEEE--eEECC--eEEEEEeCCCCCCccccchhh
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAF------QPATDCIREVK--GSVNG--IKVTFIDTPGFLPSCVRNVKR 234 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~------~~~Tt~~~~~~--~~~~G--~~l~LIDTPGl~d~~~~~~~~ 234 (791)
|.++|+|+|++|+|||||+|.|+|......+.+ .+.+.....+. .+..+ ..++++||+|++...... ..
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~ 79 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC 79 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH
Confidence 468999999999999999999998654332211 01121111111 12122 278999999998642211 11
Q ss_pred hHHH----HHHHHHHH------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 235 NRKI----MLSVKKFI------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 235 n~~i----~~~ikk~l------------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+.+ .......+ ...++++++|+++......+..|..+++.+.+. .++|+|+||+|.+
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 1111 11111111 112468888885443333444566666666543 7899999999988
Q ss_pred CC
Q 003857 299 LP 300 (791)
Q Consensus 299 ~p 300 (791)
.+
T Consensus 154 t~ 155 (270)
T 3sop_A 154 TL 155 (270)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.04 E-value=7.7e-10 Score=110.21 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=70.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc-cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v-s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
..++|+|+|.+|||||||+|+|++...... ....+++.. ...+..+.|+||||.... ...+...++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~ 77 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------DYDGSGVTLVDFPGHVKL-------RYKLSDYLK 77 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET------TGGGSSCEEEECCCCGGG-------THHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE------EeeCceEEEEECCCcHHH-------HHHHHHHHH
Confidence 458999999999999999999998763322 112222211 115678999999999533 122222222
Q ss_pred HHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcc-----cccccEEEEEeccCCCCC
Q 003857 244 KFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGT-----AIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld-~~t~~~~D~~llk~L~~~fg~-----~i~k~vIVVLTK~D~l~p 300 (791)
..+ ..+|+++||++.. ... .-......+.+.+.. ....|+++|+||+|+...
T Consensus 78 ~~~--~~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 78 TRA--KFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHG--GGEEEEEEEEETTSCTT---CCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred hcc--ccCCEEEEEEECCCChH---HHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 211 2368999996665 211 112333334433321 124789999999998743
No 124
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.04 E-value=2.1e-10 Score=113.03 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=72.1
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE-ECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~-~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
....++|+|+|.+|||||||+|.+++............|......... .....+.|+||||....... ...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~------ 88 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFD------ 88 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCC------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhh------
Confidence 345689999999999999999999986443322111222222222211 23478999999997542110 000
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++... ......+...+.+........++++|.||+|+..
T Consensus 89 ~~~~~--~~~~~~i~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 89 YEMIF--RGTGALIYVIDAQDDY-MEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HHHHH--HTCSEEEEEEETTSCC-HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ccccc--ccCCEEEEEEECCCch-HHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 01223 2469999997665431 0112233444444321222579999999999873
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.03 E-value=6.1e-11 Score=116.92 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++....... .+..|.+.......+++ ..+.|+||||.......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI----------- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH-HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH-----------
Confidence 45689999999999999999999986544332 11223344444445566 57899999997543110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l~p 300 (791)
...++ ..+|++++|++++... ....+..++...... ....++++|+||+|+...
T Consensus 99 ~~~~~--~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 99 TSSYY--RGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp SCC----CCCSEEEECC-CCCSH---HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHh--hcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 11122 3579999995554321 111222222222211 114789999999998743
No 126
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.03 E-value=4.5e-10 Score=112.47 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++..... ...+++.........+.+. .+.|+||||.... ..+ .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~---~ 99 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY--------DRL---R 99 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhh--------hHH---H
Confidence 45899999999999999999999865332 2223333333334455554 7899999997432 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++.... .... ..+..+.... ...|+++|+||+|+..
T Consensus 100 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 100 PLFY--PDASVLLLCFDVTSPNS-FDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRK 152 (214)
T ss_dssp -------CEEEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGS
T ss_pred HHHh--ccCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhc
Confidence 1223 35799999966653211 0010 1233333322 2478999999999863
No 127
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.03 E-value=5.7e-10 Score=109.24 Aligned_cols=119 Identities=14% Similarity=0.193 Sum_probs=70.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|+|++.... ....+++.........+.+ ..+.|+||||..... . +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~-~--- 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR-------N-C--- 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC-------C-T---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcch-------h-H---
Confidence 34589999999999999999999986522 2233444333333344444 578899999975331 0 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~-~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|.+++....-......+..+...... ....++++|.||+|+.
T Consensus 86 -~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 86 -ERYL--NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp -HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred -HHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 1234 3569999997776432100111233333333210 1247899999999985
No 128
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.03 E-value=3.5e-10 Score=111.22 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=73.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|||||||+|.|.+.....+. .|.........+++..+.++||||...... + ...+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~~~~ 87 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARR--------L---WKDY 87 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTT--------S---GGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHH--------H---HHHH
Confidence 379999999999999999999987644322 222223345567889999999999854310 0 1122
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 299 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l~ 299 (791)
+ ..+|++++|.+++... .-..+...+...... ....|+++|.||+|+..
T Consensus 88 ~--~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 88 F--PEVNGIVFLVDAADPE---RFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp C--TTCCEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred H--hcCCEEEEEEECCChH---HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 3 3679999996665332 111233334443321 13579999999999863
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.03 E-value=7.6e-10 Score=109.65 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=67.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
.++|+|+|.+|||||||+|+|.+........ |.........+++..+.++||||...... ....+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~~~~ 89 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARR-----------VWKNY 89 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CC-----------GGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhhHH-----------HHHHH
Confidence 4799999999999999999999876443221 21111234456789999999999754311 01122
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 246 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
+ ..+|++++|++++... .-..+...+.+.... ....|+++|.||+|+.
T Consensus 90 ~--~~~d~~i~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 90 L--PAINGIVFLVDCADHE---RLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp G--GGCSEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred H--hcCCEEEEEEECCCHH---HHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 3 2569999996664331 111233344443321 1257999999999986
No 130
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.4e-10 Score=116.67 Aligned_cols=120 Identities=17% Similarity=0.080 Sum_probs=70.3
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|.+|||||||+|+|++........ +..+.+.......+.+ ..+.|+||||...... .
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA-----------I 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC-----------C
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCccchhh-----------h
Confidence 345899999999999999999999876543321 1222233333445566 5899999999753311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
...++ ..+|++++|++++...........+..+..... ...|+++|+||+|+..
T Consensus 79 ~~~~~--~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 79 TSAYY--RGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH 132 (223)
T ss_dssp CGGGT--TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred HHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 11223 357999999665432110011122333333321 2478999999999863
No 131
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=4.1e-10 Score=125.97 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccC--C---CCceeEEEEEEe--EECC--eEEEEEeCCCCCCccccchhh
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA--F---QPATDCIREVKG--SVNG--IKVTFIDTPGFLPSCVRNVKR 234 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~--~---~~~Tt~~~~~~~--~~~G--~~l~LIDTPGl~d~~~~~~~~ 234 (791)
+..++|+|+|++|||||||+|.|+|......+. . ...|.....+.. ...+ ..++++||||++..... ...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhh
Confidence 456899999999999999999999976532221 0 012322222222 2223 37899999999764110 000
Q ss_pred hHHHH----HHHHHHH-----------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 235 NRKIM----LSVKKFI-----------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 235 n~~i~----~~ikk~l-----------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
-..+. ..+..++ ....+|+|||++.......+..+..+++.+.. ..++|+|+||+|+..
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 01111 1122221 12346678888544322333334445544432 478999999999874
No 132
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=5.1e-10 Score=109.28 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=72.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.|++.... ....+++.........+++ ..+.|+||||...... ..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------LR 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-----------TG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-----------HH
Confidence 4589999999999999999999976422 2223333333333344455 6789999999854310 01
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++......... ..+..+.+... ..|+++|+||+|+..
T Consensus 84 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 84 PLSY--PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp GGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred HHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 1222 3679999996665331100001 23344444321 479999999999874
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.01 E-value=1.1e-10 Score=127.47 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=74.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
+|+|+|.+|||||||||+|++....+ ..++.+|..+......+.+ ..++|+||||+.+.... ...+...+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i-~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~----~~~l~~~fl~~i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKI-ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ----GVGLGHQFLRHI 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEE-SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC----TTTTHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcc-ccCCccccCceEEEEEeCCCceEEEecCCCCcccccc----cchhHHHHHHHH
Confidence 68899999999999999999865433 3444455554444445554 89999999998542111 111222222223
Q ss_pred hcCCCCEEEEEEeccCcc-CC-CCcH-HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLIS-MG-FSDF-PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t-~~-~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...|++|+|++++... .. ..+. .+++.|.........+|+++|+||+|+.
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 2359999997665421 10 0111 2333444321112358899999999986
No 134
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=7.1e-10 Score=124.20 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=66.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--cCCCC-ceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhH----H
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQP-ATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNR----K 237 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~~-~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~----~ 237 (791)
++|+|+|++|+|||||+|.|+|...... ....+ .+.....+.....+ ..++++||+|++...... ..-. .
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~-~~~~~i~~~ 121 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKE-DSYKPIVEF 121 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHH-HHSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccc-hhhhHHHHH
Confidence 5699999999999999999999753321 11112 22222222222223 278999999998642110 0001 1
Q ss_pred HHHHHHHHHh-------------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 238 IMLSVKKFIR-------------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 238 i~~~ikk~l~-------------~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
+...+..++. ...+|+++|++.-........|..+++.|. ...++|+|+||+|.+++
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch
Confidence 1122222221 113566665532222223334555655554 14799999999998854
No 135
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.00 E-value=3.4e-10 Score=108.76 Aligned_cols=116 Identities=18% Similarity=0.076 Sum_probs=71.2
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++..... ...+++.........+.+. .+.|+||||...... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 70 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-----------LR 70 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS--SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-----------TG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-----------HH
Confidence 35899999999999999999999754322 2223333333334455554 567999999843210 01
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++.... ..+. ..+..+..... ..|+++|+||+|+..
T Consensus 71 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 71 PLSY--PQTDVSLICFSLVSPAS-FENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp GGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred HHhc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 1122 46799999976654221 0111 23344444322 479999999999863
No 136
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.00 E-value=2.5e-10 Score=112.84 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=70.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.|++...... ..+++.........+.+ ..+.|+||||..... .. .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~---~ 90 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYIADIEVDGKQVELALWDTAGQEDYD--------RL---R 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT--------TT---G
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEEEEEEECCEEEEEEEEECCCchhHH--------HH---H
Confidence 458999999999999999999998654322 12322221112234455 478999999974321 00 1
Q ss_pred HHHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t-~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++... .......++..+.... ...|+++|+||+|+..
T Consensus 91 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 91 PLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQ 143 (201)
T ss_dssp GGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTT
T ss_pred HHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhc
Confidence 1122 4679999997665431 1000012333343332 1479999999999874
No 137
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=3.4e-10 Score=112.44 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=69.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|+|++...... ..+++.........+.+ ..+.|+||||...... ...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-----------LRP 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-----------TGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-----------HHH
Confidence 47999999999999999999998764432 22333333223345555 4789999999854311 011
Q ss_pred HHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t-~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++... ....+..++..+.... ...|+++|+||+|+..
T Consensus 92 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 92 LSY--PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRS 143 (207)
T ss_dssp GGC--TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGG
T ss_pred hhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhc
Confidence 122 4679999997665432 1001112333444322 1478999999999863
No 138
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.98 E-value=3.2e-10 Score=112.71 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=70.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.+++.... ....+++.........+++. .+.|+||||...... ..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 95 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-----------LR 95 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT-----------TG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH-----------HH
Confidence 4589999999999999999999965432 22334444444444455554 455999999843210 01
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++.... ..+. ..+..+.... ...|+++|+||+|+..
T Consensus 96 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 96 PLSY--PQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 148 (204)
T ss_dssp GGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred HHHh--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence 1122 46799999976654321 0111 2333333332 2479999999999863
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.97 E-value=3.9e-10 Score=109.59 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|.|++..... ...+++.........+.+ ..+.|+||||..... .+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~--- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------NV--- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT--------TT---
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCChhhh--------hh---
Confidence 345899999999999999999999865322 122222222222233333 578999999974321 00
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++.... ... ...+..+.... ...|+++|.||+|+.
T Consensus 72 ~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 72 RPLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 124 (184)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTCEEEEEEECGGGG
T ss_pred HHhhc--CCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHHC---CCCCEEEEEEcchhh
Confidence 11122 46799999976654211 011 12223343332 147899999999986
No 140
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=5.7e-10 Score=123.99 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=43.5
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEe---------------------EEC---CeEEEEEeCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG---------------------SVN---GIKVTFIDTP 222 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~---------------------~~~---G~~l~LIDTP 222 (791)
++|+|+|.+|||||||+|+|++.. +.++.++.+|........ .+. +.++.|+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 489999999999999999999987 666666555654333221 122 3579999999
Q ss_pred CCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccC
Q 003857 223 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL 262 (791)
Q Consensus 223 Gl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~ 262 (791)
|+..... ..+.+...+..++ ..+|++++|+++..
T Consensus 80 G~~~~a~----~~~~l~~~~l~~i--~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAH----EGRGLGNKFLDDL--RMASALIHVVDATG 113 (397)
T ss_dssp -------------------CCCSS--TTCSEEEEEEETTC
T ss_pred Ccccchh----hhhhHHHHHHHHH--hcCCEEEEEEeccc
Confidence 9964311 1122222211112 36899999976644
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.96 E-value=2.4e-09 Score=115.70 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=73.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|.|++...... . .|...........+..+.|+||||-.... . ....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~---~~~~ 228 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--I--PTIGFNVETVEYKNISFTVWDVGGQDKIR--------P---LWRH 228 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--E--EETTEEEEEEEETTEEEEEEECC-----C--------C---SHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--c--cccceEEEEEecCcEEEEEEECCCCHhHH--------H---HHHH
Confidence 457999999999999999999998764322 1 25555555667789999999999953321 1 1122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l~ 299 (791)
++ ..+|++++|++++... .-..+...+....... ...|+++|+||+|+..
T Consensus 229 ~~--~~ad~vilV~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 229 YF--QNTQGLIFVVDSNDRE---RVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HH--TTEEEEEEEEETTCSS---SHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred Hh--ccCCEEEEEEECCchH---HHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 33 3569999997665332 1122333344433221 2478999999999863
No 142
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.96 E-value=2.1e-09 Score=105.28 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHH
Q 003857 162 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 162 ~~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
.....++|+|+|.+|||||||+|.+++....... .+ |.........+++ ..+.|+||||.... .
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~--~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~--- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE--SP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL--------Q--- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC--CT-TCEEEEEEEEETTEEEEEEEEECSSSCCH--------H---
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CC-CcceEEEEEEECCEEEEEEEEECCCChhh--------h---
Confidence 3455699999999999999999999876543221 12 2332334556666 46677999998432 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
++. .+|++++|++++...........+..+..... ....++++|.||+|+.
T Consensus 82 -----~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 -----FAA--WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -----HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred -----eec--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 222 35999999666543210000122223322211 1357899999999985
No 143
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.95 E-value=2.6e-09 Score=105.58 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=65.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCC-cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~-~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
....+|+|+|++|||||||+|.|+|.. ...+....+.|.....+ .+.+ .+.++||||+....... ...+.....+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~~~-~~~l~Dt~G~~~~~~~~-~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EVAD-GKRLVDLPGYGYAEVPE-EMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EEET-TEEEEECCCCC-------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--EecC-CEEEEECcCCcccccCH-HHHHHHHHHH
Confidence 345799999999999999999999976 33333332333322222 2233 67899999996532111 1111222223
Q ss_pred HHHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~-~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++.. ...+.+++|.++.... ...+..+.+.+.. ...+.++|.||+|.+
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVD-----SNIAVLVLLTKADKL 150 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH-----TTCCEEEEEECGGGS
T ss_pred HHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHHHH-----cCCCeEEEEecccCC
Confidence 333322 3567888886654321 1112233333332 247888899999976
No 144
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.95 E-value=2.7e-09 Score=103.26 Aligned_cols=121 Identities=11% Similarity=0.049 Sum_probs=69.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCC-------CCceeEEEEEEe---EE--CCeEEEEEeCCCCCCccccch
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKG---SV--NGIKVTFIDTPGFLPSCVRNV 232 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~-------~~~Tt~~~~~~~---~~--~G~~l~LIDTPGl~d~~~~~~ 232 (791)
..++|+|+|.+|||||||+|.|.+......... ...|........ .+ ....+.|+||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 458999999999999999999988654432110 011222221111 12 23578999999975431
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHH----HHHHHhcccccccEEEEEeccCCCC
Q 003857 233 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLK----LMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 233 ~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk----~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.. ...++ ..+|++++|++++.... ..+...++ ++.+.-......|+++|+||+|+..
T Consensus 89 ----~~---~~~~~--~~~d~~i~v~D~~~~~~-~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 89 ----AS---RKLIL--RGVDGIVFVADSAPNRL-RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp ----HH---HHHHT--TTCCEEEEEEECCGGGH-HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred ----HH---HHHHH--hcCCEEEEEEECCcchh-hHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 11 12233 46799999976652210 01222233 3333211123579999999999863
No 145
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.94 E-value=7.9e-10 Score=110.99 Aligned_cols=117 Identities=13% Similarity=0.037 Sum_probs=70.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE--CCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~--~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|.|++..... ...+++.........+ ....+.|+||||..... . .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~---~ 91 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD--------N---V 91 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT--------T---T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH--------H---H
Confidence 345899999999999999999999765432 2223333322222233 34688999999974321 0 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCC-cHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFS-DFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~-D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++....... ...++..+.... ...|+++|.||+|+.
T Consensus 92 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 92 RPLCY--SDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLR 144 (214)
T ss_dssp GGGGC--TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGG
T ss_pred HHHHc--CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhc
Confidence 11223 36799999976654321000 113344444432 247899999999986
No 146
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.93 E-value=6.4e-09 Score=102.83 Aligned_cols=122 Identities=14% Similarity=-0.017 Sum_probs=71.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|.|++...... ..+..|.+.......+++. .+.++||||.... ...+..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~~~~- 91 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA-------GGWLRD- 91 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG-GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG-------GHHHHH-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc-CCCCcccceEEEEEEECCEEEEEEEEecCCCccc-------hhhhHH-
Confidence 4458999999999999999999987543222 1122233333334455664 6678899998532 111111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++. .+|++++|.+++...........+..+..... ....|+++|.||+|+..
T Consensus 92 --~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 92 --HCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 144 (195)
T ss_dssp --HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT
T ss_pred --Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc
Confidence 2232 35999999766543210111233333433321 12478999999999863
No 147
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.93 E-value=6.7e-10 Score=111.07 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=69.4
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|.|++..... ...+++.........+++ ..+.|+||||..... .+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~--- 92 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------NV--- 92 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT--------TT---
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh--------HH---
Confidence 345899999999999999999999865432 122222222222233333 678999999974321 00
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D--~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...++ ..+|++++|++++.... ... ...+..+.... ...++++|.||+|+.
T Consensus 93 ~~~~~--~~~d~~ilv~D~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 93 RPLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 145 (205)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTCEEEEEEECGGGG
T ss_pred HHhhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC---CCCCEEEEEechhhc
Confidence 11122 46799999966653211 011 12233344332 147899999999986
No 148
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=3.5e-09 Score=107.32 Aligned_cols=122 Identities=16% Similarity=0.043 Sum_probs=70.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
...++|+|+|.+|||||||+|.+.+.....+....+.+.+.......++|. .+.++||+|... .. ..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~--------~~---~~ 103 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG--------EN---EW 103 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH--------HH---HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc--------hh---hh
Confidence 345899999999999999999999865443333323333333334456665 467899999631 01 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+... .....|++++|.+++....-.........+.+.. .....|+++|.||+|+.
T Consensus 104 l~~~-~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 104 LHDH-CMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLV 158 (211)
T ss_dssp HHHC-CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCG
T ss_pred HHHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHh
Confidence 2221 1135688888876654321000011222222211 11247899999999986
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.91 E-value=1.4e-09 Score=107.95 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=71.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|.|++.... ....+++.........+++ ..+.|+||||...... + .
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR--------L---R 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH--------H---H
Confidence 4589999999999999999999976532 2222333332233334444 5899999999854311 0 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D-~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++........ ...+..+..... ..|+++|+||+|+..
T Consensus 75 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 75 PLSY--RGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp CGGG--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred Hhhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 1223 467999999766533210000 023334433321 479999999999763
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.90 E-value=1.4e-09 Score=123.18 Aligned_cols=114 Identities=10% Similarity=0.042 Sum_probs=75.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
..++|+|+|.+|||||||+|+|++..... . ..|.........+.+..+.|+||||..... .+ ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~--~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~---~~~ 385 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--T--IPTVGFNVETVTYKNVKFNVWDVGGQDKIR--------PL---WRH 385 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--C--CCCSSEEEEEEESSSCEEEEEEECCCGGGS--------GG---GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--c--CCccceeEEEEEeCCEEEEEEECCCcHHHH--------HH---HHH
Confidence 45899999999999999999999877322 2 225555555666788999999999964321 00 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEeccCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 298 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~--~i~k~vIVVLTK~D~l 298 (791)
++ ..+|++|+|++++... .-..+...+.+.... ....|+++|+||+|+.
T Consensus 386 ~~--~~ad~~i~V~D~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 386 YY--TGTQGLIFVVDCADRD---RIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp GG--TTCCEEEEEEETTCGG---GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred Hh--ccCCEEEEEEECcchh---HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 33 4679999996665432 111233333443321 1247999999999986
No 151
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.90 E-value=2.7e-10 Score=109.33 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=62.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|++++.... ....+++.........+.+ ..+.|+||||...... ..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-----------LR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTT-----------TG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-----------hH
Confidence 3489999999999999999999976522 1222322222111222333 4567999999754310 01
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..+|++++|++++.... .... .++..+..... ..|+++|+||+|+.
T Consensus 74 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 74 PLSY--RGADVFILAFSLISKAS-YENVSKKWIPELKHYAP---GVPIVLVGTKLDLR 125 (182)
T ss_dssp GGGG--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred Hhhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence 1223 45799999966643211 0111 23334444322 47999999999976
No 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.88 E-value=1.9e-09 Score=104.97 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=62.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEE-----CCeEEEEEeCCCCCCccccchhhhHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV-----NGIKVTFIDTPGFLPSCVRNVKRNRKIM 239 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~-----~G~~l~LIDTPGl~d~~~~~~~~n~~i~ 239 (791)
.++|+|+|++|||||||+|.|++..........+++ .+.......+ ....+.++||||.... ..+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~ 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF--------YSTH 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHH--------HTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH--------HHhh
Confidence 379999999999999999999986322222221222 2222222222 3568999999997321 0011
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 240 LSVKKFIRRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 240 ~~ikk~l~~~~~dvVLlV~~ld~~-t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++. ..+++++|.+++.. .........+..+.... ...|+++|.||+|+.
T Consensus 74 ---~~~~~--~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 74 ---PHFMT--QRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVS 125 (184)
T ss_dssp ---HHHHH--HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGC
T ss_pred ---HHHcc--CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcc
Confidence 11222 35888888766543 11011112233333321 147899999999975
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.87 E-value=6e-09 Score=118.20 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=71.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc------------------------------cCCCCceeEEEEEEeEECCeE
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET------------------------------DAFQPATDCIREVKGSVNGIK 215 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v------------------------------s~~~~~Tt~~~~~~~~~~G~~ 215 (791)
.++|+|+|.+|+|||||+|.|++...... ....+.|.++........+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 48999999999999999999976521110 111244555555556677899
Q ss_pred EEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-CC--CcHHHHHH--HHHHhcccccccEEE
Q 003857 216 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-GF--SDFPLLKL--MTEVFGTAIWFNTIL 290 (791)
Q Consensus 216 l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~-~~--~D~~llk~--L~~~fg~~i~k~vIV 290 (791)
+.||||||..+. ...+...+ ..+|++|+|++++.... .. ......+. +....+ .+++|+
T Consensus 113 ~~iiDTPG~~~f-----------~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~---~~~iIv 176 (483)
T 3p26_A 113 FTIVDAPGHRDF-----------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG---IHNLII 176 (483)
T ss_dssp EEEECCCCCGGG-----------HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT---CCCEEE
T ss_pred EEEEECCCcHHH-----------HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC---CCcEEE
Confidence 999999999432 12223334 46799999966653210 00 01122221 122222 246999
Q ss_pred EEeccCCC
Q 003857 291 VMTHSSST 298 (791)
Q Consensus 291 VLTK~D~l 298 (791)
|+||+|+.
T Consensus 177 viNK~Dl~ 184 (483)
T 3p26_A 177 AMNKMDNV 184 (483)
T ss_dssp EEECGGGG
T ss_pred EEECcCcc
Confidence 99999986
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.38 E-value=2.4e-10 Score=112.88 Aligned_cols=117 Identities=17% Similarity=0.055 Sum_probs=68.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|.+|||||||+|+|++..... ...+++..........++ ..+.|+||||..... .. .
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~---~ 95 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RL---R 95 (204)
Confidence 35899999999999999999999754321 222333332222333334 456699999974321 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D-~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
..++ ..+|++++|++++........ ...+..+..... ..|+++|+||+|+..
T Consensus 96 ~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 96 PLSY--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 1122 356899999665433211111 123333333221 478999999999874
No 155
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=2.3e-10 Score=125.76 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=72.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC------cccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT------KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 240 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~------~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~ 240 (791)
.+|+++|.||||||||+|+|++.. ...++..+++|+....+.. +..+.|+||||+.+......... .+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~---~~ 234 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVG---KQ 234 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSC---HH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhh---HH
Confidence 589999999999999999999863 3345666566666655443 22389999999987642111112 24
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 241 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 241 ~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++.++....++.++|+++.+..-. ......+..+. ....++++++||.|.+.
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~-~g~l~~~d~l~-----~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLF-FSGLARFDYVS-----GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEE-ETTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHHHhccccccCceEEEEcCCCEEE-EcceEEEEEec-----CCCceEEEEecCccccc
Confidence 4555555567888999854422210 00111111111 12468999999999874
No 156
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=9.7e-10 Score=117.48 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=58.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCC------CceeEEEE--EEeEECC--eEEEEEeCCCCCCccccc---
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQ------PATDCIRE--VKGSVNG--IKVTFIDTPGFLPSCVRN--- 231 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~------~~Tt~~~~--~~~~~~G--~~l~LIDTPGl~d~~~~~--- 231 (791)
..++|+|+|++|||||||+|.|+|...+..+.+. ..|..... +.....+ ..++++||||++......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999987444332110 11222111 1222222 478999999996431000
Q ss_pred hhhhHHHHHHHHHHH-----------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 232 VKRNRKIMLSVKKFI-----------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l-----------~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
......+......++ ...+++++||++.....+.+..+. +.+... .. ..++++|+||+|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l-~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAI-HN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHH-TT--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHH-Hh--cCCEEEEEEeCCCCC
Confidence 001111111111222 112456677775543322322222 333333 21 258999999999874
No 157
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.85 E-value=2e-10 Score=126.32 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=77.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCC-----CcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ-----TKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~-----~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
.+|+++|.||||||||+|+|++. ....++..+++|+....+.. +..+.||||||+.+.......... +.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~---~~ 236 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDA---RD 236 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCT---TT
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhH---HH
Confidence 58999999999999999999987 55666777667776665543 234899999999876321111111 23
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 300 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~p 300 (791)
++.++....+|.++|+++....-. ......+..+. ....++++++||.|.+..
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~-~g~l~~l~~l~-----~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLF-FGGLARLDYIK-----GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEE-ETTTEEEEEEE-----SSSEEEEEEECTTSCEEE
T ss_pred HHHHhcccccCceEEEEcCCceEE-ECCEEEEEEcc-----CCCceEEEEecCCccccc
Confidence 444444567899999965532200 00100011111 123689999999998743
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.4e-09 Score=123.84 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=74.8
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccC------------------------------CCCceeEEEEEEeEECC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNG 213 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~------------------------------~~~~Tt~~~~~~~~~~G 213 (791)
...++|+|+|.+|+|||||+|.|++........ ..+.|.++........+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 446899999999999999999999764433210 12445555555566678
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc--c----CCCCcHHHHHHHHHHhccccccc
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI--S----MGFSDFPLLKLMTEVFGTAIWFN 287 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~--t----~~~~D~~llk~L~~~fg~~i~k~ 287 (791)
..++||||||..+. ...+...+ ..+|++|+|++++.. . ........+..+. .++ .++
T Consensus 245 ~~~~iiDTPG~e~f-----------~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lg---i~~ 307 (611)
T 3izq_1 245 ANFTIVDAPGHRDF-----------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG---IHN 307 (611)
T ss_dssp CEEEEEECCSSSCH-----------HHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTT---CCE
T ss_pred ceEEEEECCCCccc-----------HHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcC---CCe
Confidence 99999999998432 12222222 468999999666431 0 0011122222222 222 246
Q ss_pred EEEEEeccCCCC
Q 003857 288 TILVMTHSSSTL 299 (791)
Q Consensus 288 vIVVLTK~D~l~ 299 (791)
+|+|+||+|+..
T Consensus 308 iIVVvNKiDl~~ 319 (611)
T 3izq_1 308 LIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEECTTTTT
T ss_pred EEEEEecccccc
Confidence 899999999863
No 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.81 E-value=5.1e-09 Score=103.30 Aligned_cols=120 Identities=16% Similarity=0.050 Sum_probs=66.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|.+.|.....+....+.+.+.......++|. .+.++||+|..... ..+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~-------~~~~~--- 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN-------EWLHD--- 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------CTTGG---
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh-------hhHHH---
Confidence 4899999999999999999999754333332222222333334456665 56789999974310 00001
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.+.. ..|++++|.+++....-......+..+.+... ....++++|.||+|+.
T Consensus 76 ~~~~--~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 76 HCMQ--VGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLV 127 (192)
T ss_dssp GHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCG
T ss_pred hhcc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhh
Confidence 1121 24888888666543210011122333333311 1247899999999975
No 160
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.80 E-value=8.9e-09 Score=101.54 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=69.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCe--EEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~--~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
..++|+|+|++|||||||+|.|+|........ +..+.+.......++|. .+.++||||..... .+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~--------~~~--- 71 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQERYR--------RIT--- 71 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT--------CCC---
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCchhhh--------hhh---
Confidence 34899999999999999999999876443321 12223444445566775 56789999964321 011
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+. ..++++++|.++............+..+.... ....++++|+||+|+.
T Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 72 SAYY--RGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLR 123 (199)
T ss_dssp HHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCG
T ss_pred HHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccc
Confidence 1122 35689999966543211011112233333321 1247899999999985
No 161
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.80 E-value=7.4e-09 Score=105.52 Aligned_cols=116 Identities=13% Similarity=0.179 Sum_probs=70.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCce-eEEEEEEeEECC--eEEEEEeCCCCCCccccchhhhHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 242 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~T-t~~~~~~~~~~G--~~l~LIDTPGl~d~~~~~~~~n~~i~~~i 242 (791)
.++|+|||.+|||||||++.+....... ...++. .+.........+ +.+.|+||+|..... .+.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~--~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~--------~l~--- 79 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR--------SLI--- 79 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCG--------GGH---
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCC--CcCCccceEEEEEEEEecceEEEEEEEECCCchhhh--------hHH---
Confidence 4899999999999999999998643221 111221 122222333444 577899999975331 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 243 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 243 kk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++ ..++++++|.+++....-..-...+..+....+.. .|+++|.||+|+.
T Consensus 80 ~~~~--~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~ 131 (216)
T 4dkx_A 80 PSYI--RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLA 131 (216)
T ss_dssp HHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCG
T ss_pred HHHh--ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchH
Confidence 1233 45799999977765432112234555555555443 6899999999976
No 162
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.80 E-value=4.5e-09 Score=110.97 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=71.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEE--EEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKV--TFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l--~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.++|+|+|.+|||||||+|.+++.... ....++|..........++..+ .|+||||..... ....
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~~~ 221 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------RLRP 221 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-----------TTGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-----------HHHH
Confidence 389999999999999999999975432 2233445444444556666654 499999984321 0011
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~--~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.++ ..+|++++|++++.... ..+. ..+..+..... ..|+++|+||+|+.
T Consensus 222 ~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 222 LSY--PQTDVFLICFSLVSPAS-FHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR 272 (332)
T ss_dssp GGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred Hhc--cCCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence 122 36799999966654211 0111 12334443322 47999999999986
No 163
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.80 E-value=7e-09 Score=114.86 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=67.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEE--------------E-----EEEeEECCeEEEEEeCCC
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCI--------------R-----EVKGSVNGIKVTFIDTPG 223 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~--------------~-----~~~~~~~G~~l~LIDTPG 223 (791)
....++|+++|.+|+|||||+|+|++........+...|... . ..........+.|+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 345689999999999999999999985433211110000000 0 000011226899999999
Q ss_pred CCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 224 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 224 l~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..+. . ..+...+ ..+|++++|++++.........+.+..+.. .+ .+++++|+||+|+.
T Consensus 85 h~~~-------~----~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~---~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 85 HEVL-------M----ATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIVQNKVDVV 142 (403)
T ss_dssp CGGG-------H----HHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGS
T ss_pred cHHH-------H----HHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cC---CCCEEEEEECcccc
Confidence 6322 1 2222333 457999999665542211112233333332 22 25899999999986
No 164
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.79 E-value=8.8e-09 Score=117.07 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=69.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcc------cccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKT------ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKI 238 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a------~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i 238 (791)
..++|+++|.+|+|||||+|+|++.... ......+.|.+.......+.+..+.|+||||..+ .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-----------~ 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-----------L 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-----------H
Confidence 4589999999999999999999987621 1122223444544444566889999999999721 2
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 239 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 239 ~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...+...+ ..+|++++|++++..- .....+.+..+.. . ..+.++|+||+|+.
T Consensus 87 ~~~~~~~~--~~aD~~ilVvda~~g~-~~qt~e~l~~~~~-~----~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 87 IRAVVSAA--DIIDLALIVVDAKEGP-KTQTGEHMLILDH-F----NIPIIVVITKSDNA 138 (482)
T ss_dssp HHHHHHHT--TSCCEEEEEEETTTCS-CHHHHHHHHHHHH-T----TCCBCEEEECTTSS
T ss_pred HHHHHHHH--hhCCEEEEEEecCCCc-cHHHHHHHHHHHH-c----CCCEEEEEECCCcc
Confidence 23333333 4679999996654311 1122233333322 2 36679999999987
No 165
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=1.7e-08 Score=115.48 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=71.3
Q ss_pred CceEEEEEeecCCchHHHHhHhh------CCCccccc--CCCCcee----------EEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD----------CIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~~~~Tt----------~~~~~~-----------------~ 209 (791)
.+.+|+|+|.+|||||||+|+|+ |..+..++ .+.+.+. .+..+. .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998 87776663 2222210 011111 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-E
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-T 288 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-v 288 (791)
...+.+++||||||+... +...+.++........+|.+++|++. .+. ......++.+.+. .+ .
T Consensus 180 ~~~~~DvvIIDTpG~~~~-------~~~l~~el~~~~~~i~pd~vllVvDa--~~g-~~~~~~a~~~~~~------~~i~ 243 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ-------EDSLFEEMLQVANAIQPDNIVYVMDA--SIG-QACEAQAKAFKDK------VDVA 243 (504)
T ss_dssp HHTTCCEEEEEECCCCTT-------CHHHHHHHHHHHHHHCCSEEEEEEET--TCC-TTHHHHHHHHHHH------HCCC
T ss_pred HHCCCcEEEEeCCCCccc-------chhHHHHHHHHHhhhcCceEEEEEec--ccc-ccHHHHHHHHHhh------cCce
Confidence 126789999999999753 12233333332221268999999544 332 1234444444432 45 4
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
++|+||+|...
T Consensus 244 gvVlNK~D~~~ 254 (504)
T 2j37_W 244 SVIVTKLDGHA 254 (504)
T ss_dssp CEEEECTTSCC
T ss_pred EEEEeCCcccc
Confidence 88999999763
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.76 E-value=6.8e-09 Score=119.36 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=71.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc---------------ccC------CCCceeEEEEEEeEECCeEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE---------------TDA------FQPATDCIREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~---------------vs~------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
.+|+|+|.+|||||||+|+|++....+ +.. ..+.|.........+.+..+.||||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 699999999999999999997322221 000 01223333344556789999999999996
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+.. . ....++ ..+|++|+|++..... ......+++.+.. ...|+++|+||+|+.
T Consensus 94 df~-------~----~~~~~l--~~aD~allVvDa~~g~-~~~t~~~~~~~~~-----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 94 DFT-------E----DTYRTL--TAVDSALMVIDAAKGV-EPRTIKLMEVCRL-----RHTPIMTFINKMDRD 147 (528)
T ss_dssp TCC-------H----HHHHGG--GGCSEEEEEEETTTCS-CHHHHHHHHHHHT-----TTCCEEEEEECTTSC
T ss_pred hHH-------H----HHHHHH--HhCCEEEEEEeCCCCC-CHHHHHHHHHHHH-----cCCCEEEEEeCCCCc
Confidence 542 1 123334 3469999996554321 1122233333332 247999999999985
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.75 E-value=2.6e-08 Score=111.43 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=69.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc----------CC----------------------CCceeEEEEEEeEEC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD----------AF----------------------QPATDCIREVKGSVN 212 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs----------~~----------------------~~~Tt~~~~~~~~~~ 212 (791)
..++|+++|.+|+|||||+|+|++....... .. .+.|.++........
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3489999999999999999999865422211 01 112223333344557
Q ss_pred CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 003857 213 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 292 (791)
Q Consensus 213 G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVL 292 (791)
+..+.||||||..+. .. .+...+ ..+|++++|++++.... ....+.+..+. .++ .+++++|+
T Consensus 103 ~~~~~iiDtpGh~~f-------~~----~~~~~~--~~aD~~ilVvDa~~g~~-~qt~~~l~~~~-~~~---~~~iIvvi 164 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------TR----NMATGA--STCDLAIILVDARYGVQ-TQTRRHSYIAS-LLG---IKHIVVAI 164 (434)
T ss_dssp SEEEEEEECCCSGGG-------HH----HHHHHH--TTCSEEEEEEETTTCSC-HHHHHHHHHHH-HTT---CCEEEEEE
T ss_pred CceEEEEECCChHHH-------HH----HHHHHH--hhCCEEEEEEECCCCCc-HHHHHHHHHHH-HcC---CCeEEEEE
Confidence 889999999997432 11 122233 46799999966543211 11222332222 222 14689999
Q ss_pred eccCCC
Q 003857 293 THSSST 298 (791)
Q Consensus 293 TK~D~l 298 (791)
||+|+.
T Consensus 165 NK~Dl~ 170 (434)
T 1zun_B 165 NKMDLN 170 (434)
T ss_dssp ECTTTT
T ss_pred EcCcCC
Confidence 999986
No 168
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.74 E-value=1.2e-08 Score=113.00 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=71.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC---C----cc-c---cc-----CCCCceeEEEEEEeEECCeEEEEEeCCCCCCcc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ---T----KT-E---TD-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~---~----~a-~---vs-----~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~ 228 (791)
..++|+++|.+|+|||||+|+|++. . .+ . .+ ...+.|.+.........+..+.|+||||..+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 3589999999999999999999873 1 00 0 00 01233444444555567889999999998532
Q ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 229 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 229 ~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
...+...+ ..+|++++|++++.... ....+.+..+.. . ..+ +++|+||+|+.
T Consensus 89 ----------~~~~~~~~--~~aD~~ilVvda~~g~~-~qt~~~l~~~~~-~----~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 89 ----------IKNMITGA--AQMDGAILVVSAADGPM-PQTREHILLARQ-V----GVPYIVVFMNKVDMV 141 (405)
T ss_dssp ----------HHHHHHHH--TTCSSEEEEEETTTCCC-HHHHHHHHHHHH-T----TCCCEEEEEECGGGC
T ss_pred ----------HHHHHHHH--HHCCEEEEEEECCCCCc-HHHHHHHHHHHH-c----CCCEEEEEEECcccc
Confidence 12222333 46799999966543211 122233333332 1 356 88999999986
No 169
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.74 E-value=4.3e-08 Score=108.71 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=67.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc-CC-CCceeEEEEEEeEE---------------C--------CeEEEEE
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AF-QPATDCIREVKGSV---------------N--------GIKVTFI 219 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-~~-~~~Tt~~~~~~~~~---------------~--------G~~l~LI 219 (791)
..++|+++|..|+|||||+|+|+|....... .. .+.|.........+ . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 3589999999999999999999986433221 11 22243322111111 1 1689999
Q ss_pred eCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 220 DTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 220 DTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
||||.. .....+...+ ..+|++++|++++.........+.+..+. .++ .+++++|+||+|+..
T Consensus 87 DtPGh~-----------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 87 DSPGHE-----------TLMATMLSGA--SLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLVD 149 (408)
T ss_dssp ECSSHH-----------HHHHHHHTTC--SCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSSC
T ss_pred ECCCHH-----------HHHHHHHHhH--hhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCCC
Confidence 999962 1222222222 36799999966653210111223333222 222 257999999999875
Q ss_pred C
Q 003857 300 P 300 (791)
Q Consensus 300 p 300 (791)
.
T Consensus 150 ~ 150 (408)
T 1s0u_A 150 E 150 (408)
T ss_dssp T
T ss_pred H
Confidence 3
No 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.73 E-value=5.7e-08 Score=95.54 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=70.5
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeE--EEEEeCCCCCCccccchhhhHHHHHH
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--VTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~--l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
+..++|+|+|++|||||||+|.|+|........ +..+.+.......++|.. +.++||||...... .
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--------~--- 94 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA--------I--- 94 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC--------C---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEECCCCcchhh--------h---
Confidence 445899999999999999999999876443322 122333444455667765 45699999854311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+..+. ..++.+++|.+.............+..+.... ....++++|+||+|+.
T Consensus 95 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 95 TSAYY--RGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGG
T ss_pred hHHHh--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccc
Confidence 11122 24578888855543211001112223333321 2246899999999975
No 171
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.73 E-value=2.1e-08 Score=110.86 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=70.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCc------cc----cc-----CCCCceeEEEEEEeEECCeEEEEEeCCCCCCcccc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTK------TE----TD-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 230 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~------a~----vs-----~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~ 230 (791)
.++|+++|.+|+|||||+|+|++... +. .+ ...+.|...........+..+.||||||..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH----
Confidence 48999999999999999999986311 00 00 0123344444444555678999999999832
Q ss_pred chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 231 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 231 ~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
....+...+ ..+|++++|++++.... ....+.+..+.. . ..+ +++|+||+|+.
T Consensus 79 -------f~~~~~~~~--~~aD~~ilVvda~~g~~-~qt~e~l~~~~~-~----~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 79 -------YVKNMITGT--APLDGCILVVAANDGPM-PQTREHLLLARQ-I----GVEHVVVYVNKADAV 132 (397)
T ss_dssp -------HHHHHHHTS--SCCSEEEEEEETTTCSC-HHHHHHHHHHHH-T----TCCCEEEEEECGGGC
T ss_pred -------HHHHHHhhH--hhCCEEEEEEECCCCCC-HHHHHHHHHHHH-c----CCCeEEEEEECcccC
Confidence 122233333 46899999966543211 112233333322 2 356 68999999986
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.72 E-value=2.5e-08 Score=118.15 Aligned_cols=117 Identities=16% Similarity=0.078 Sum_probs=71.6
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCccc-----c------cC------CCCceeEEEEEEeEECCeEEEEEeCCCCCC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTE-----T------DA------FQPATDCIREVKGSVNGIKVTFIDTPGFLP 226 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~-----v------s~------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d 226 (791)
....+|+|+|.+|+|||||+|+|++..... + .+ ....|.........+.+..+.||||||..+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 345799999999999999999998422111 1 11 012222333345667899999999999975
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.. ..... ++. .+|++|+|++.... ....+..+++.+... ..+.++|+||+|+..
T Consensus 88 f~-------~~~~~----~l~--~aD~~llVvDa~~g-~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FT-------VEVER----SLR--VLDGAVTVLDAQSG-VEPQTETVWRQATTY-----GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CC-------HHHHH----HHH--HCSEEEEEEETTTB-SCHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred hH-------HHHHH----HHH--HCCEEEEEECCCCC-CcHHHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 41 22222 232 25999999655432 112233444444332 479999999999873
No 173
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.71 E-value=1.2e-08 Score=108.23 Aligned_cols=62 Identities=34% Similarity=0.439 Sum_probs=42.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
..++|+|+|.||||||||||+|+|...+.++..+++|+....+. + +..+.|+||||+.....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPKF 180 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTTEEEEECCCCCCSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCCC
Confidence 45899999999999999999999999888887766666554332 2 55789999999987753
No 174
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.68 E-value=5.7e-08 Score=107.72 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=67.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccccc-C-CCCceeEEEEEEeEE---------------C--------CeEEEEE
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETD-A-FQPATDCIREVKGSV---------------N--------GIKVTFI 219 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs-~-~~~~Tt~~~~~~~~~---------------~--------G~~l~LI 219 (791)
..++|+++|.+|+|||||+|+|+|....... . ..+.|.........+ . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4589999999999999999999986433221 1 122343322211111 0 1689999
Q ss_pred eCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 220 DTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 220 DTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
||||..+ ....+...+ ..+|++++|++++.........+.+..+.. ++ ..++++|+||+|+.
T Consensus 89 DtPGh~~-----------f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~---~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 89 DAPGHEA-----------LMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQI-IG---QKNIIIAQNKIELV 150 (410)
T ss_dssp ECSSHHH-----------HHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGS
T ss_pred ECCChHH-----------HHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEECccCC
Confidence 9999621 222232323 357999999666532101122233333332 22 25789999999986
No 175
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.67 E-value=1.5e-08 Score=114.02 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=72.0
Q ss_pred CceEEEEEeecCCchHHHHhHhh------CCCccccc--CCCCce----------eEEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPAT----------DCIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~~~~T----------t~~~~~~-----------------~ 209 (791)
.+..|+++|++||||||++++|. |..+..++ .+.+.. ..+..+. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999997 55554442 222211 0010010 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
...+.+++||||||+... +...+.+++.......||.+++| +|+.+. ......++.+.+. .....
T Consensus 179 ~~~~~DvVIIDTaGrl~~-------d~~lm~el~~i~~~~~pd~vlLV--vDA~~g-q~a~~~a~~f~~~-----~~i~g 243 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE-------DKALIEEMKQISNVIHPHEVILV--IDGTIG-QQAYNQALAFKEA-----TPIGS 243 (443)
T ss_dssp HHTTCSEEEEECCCCSSC-------CHHHHHHHHHHHHHHCCSEEEEE--EEGGGG-GGHHHHHHHHHHS-----CTTEE
T ss_pred HhCCCCEEEEECCCcccc-------hHHHHHHHHHHHHhhcCceEEEE--EeCCCc-hhHHHHHHHHHhh-----CCCeE
Confidence 114589999999999654 23344445443333468999999 444432 1233444444433 24677
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+|+||+|..
T Consensus 244 VIlTKlD~~ 252 (443)
T 3dm5_A 244 IIVTKLDGS 252 (443)
T ss_dssp EEEECCSSC
T ss_pred EEEECCCCc
Confidence 899999976
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.65 E-value=2.3e-08 Score=112.88 Aligned_cols=117 Identities=20% Similarity=0.114 Sum_probs=70.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcc------------------------cc-c-----CCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKT------------------------ET-D-----AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a------------------------~v-s-----~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++|+++|.+|+|||||+|+|++.... .+ + ...+.|.++........+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 3589999999999999999999864100 00 0 0123454444445566788
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc----C--CCCcHHHHHHHHHHhcccccccE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS----M--GFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t----~--~~~D~~llk~L~~~fg~~i~k~v 288 (791)
.+.||||||..+. ...+...+ ..+|++++|++++... . .....+.+..+. ..+ -.++
T Consensus 86 ~~~iiDtPGh~~f-----------~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~i 148 (458)
T 1f60_A 86 QVTVIDAPGHRDF-----------IKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQL 148 (458)
T ss_dssp EEEEEECCCCTTH-----------HHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEE
T ss_pred eEEEEECCCcHHH-----------HHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeE
Confidence 9999999997432 12222233 4689999996654210 0 001222222222 222 1358
Q ss_pred EEEEeccCCC
Q 003857 289 ILVMTHSSST 298 (791)
Q Consensus 289 IVVLTK~D~l 298 (791)
++|+||+|+.
T Consensus 149 ivviNK~Dl~ 158 (458)
T 1f60_A 149 IVAVNKMDSV 158 (458)
T ss_dssp EEEEECGGGG
T ss_pred EEEEEccccc
Confidence 9999999986
No 177
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.64 E-value=3.1e-08 Score=110.91 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=67.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc-------------------------c-----CCCCceeEEEEEEeEECCe
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET-------------------------D-----AFQPATDCIREVKGSVNGI 214 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v-------------------------s-----~~~~~Tt~~~~~~~~~~G~ 214 (791)
..++|+++|.+|+|||||+|+|++...... + ...+.|.+.........+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 348999999999999999999986411000 0 0123444555455666788
Q ss_pred EEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc------CCCCcHHHHHHHHHHhcccccccE
Q 003857 215 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS------MGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 215 ~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t------~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
.+.||||||..+. ...+...+ ..+|++++|++++... ......+.+..+. .++ ..++
T Consensus 85 ~~~iiDtpG~~~f-----------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~-~~~---~~~i 147 (435)
T 1jny_A 85 FFTIIDAPGHRDF-----------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG---LDQL 147 (435)
T ss_dssp EEEECCCSSSTTH-----------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT---CTTC
T ss_pred EEEEEECCCcHHH-----------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHH-HcC---CCeE
Confidence 9999999998543 11222333 4689999996665321 1011112222222 222 1468
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
++|+||+|+..
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 89999999874
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.63 E-value=5.7e-09 Score=121.50 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccC------------------------------CCCceeEEEEEEeEECC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNG 213 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~------------------------------~~~~Tt~~~~~~~~~~G 213 (791)
...++|+|+|.+|+|||||+|.|++....+... ..+.|.+.........+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 345899999999999999999997532222110 12344455555566678
Q ss_pred eEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc----C--CCCcHHHHHHHHHHhccccccc
Q 003857 214 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS----M--GFSDFPLLKLMTEVFGTAIWFN 287 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t----~--~~~D~~llk~L~~~fg~~i~k~ 287 (791)
..+.||||||..+.... +...+ ..+|++|+|++++... . .......+..+.. +| ..+
T Consensus 255 ~~i~iiDTPGh~~f~~~-----------~~~~~--~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~ 317 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-----------MIAGA--SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISE 317 (592)
T ss_dssp ----CCEEESSSEEEEE-----------CCC---------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCC
T ss_pred eEEEEEECCChHHHHHH-----------HHHHH--hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCe
Confidence 89999999998754211 00111 2469999996665310 1 2233344433332 22 124
Q ss_pred EEEEEeccCCC
Q 003857 288 TILVMTHSSST 298 (791)
Q Consensus 288 vIVVLTK~D~l 298 (791)
+|+|+||+|+.
T Consensus 318 iIvviNKiDl~ 328 (592)
T 3mca_A 318 IVVSVNKLDLM 328 (592)
T ss_dssp EEEEEECGGGG
T ss_pred EEEEEeccccc
Confidence 89999999976
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.63 E-value=2.9e-08 Score=109.18 Aligned_cols=101 Identities=13% Similarity=0.265 Sum_probs=64.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+++|.+|+|||||+|+|+. .+.|.+.........+..+.||||||..+. ... +...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~---------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------~~~----~~~~~- 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK---------KGTSSDITMYNNDKEGRNMVFVDAHSYPKT-------LKS----LITAL- 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE---------EEEESSSEEEEECSSSSEEEEEECTTTTTC-------HHH----HHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHh---------CCEEEEeeEEEEecCCeEEEEEECCChHHH-------HHH----HHHHH-
Confidence 899999999999999999991 123334444455667889999999998643 111 22222
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE-EEEEe-ccCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT-ILVMT-HSSS 297 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v-IVVLT-K~D~ 297 (791)
..+|++++|++ +. .......+.+..+. ..+ .+. ++++| |+|+
T Consensus 82 -~~aD~ailVvd-~~-g~~~qt~e~~~~~~-~~~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 82 -NISDIAVLCIP-PQ-GLDAHTGECIIALD-LLG----FKHGIIALTRSDST 125 (370)
T ss_dssp -HTCSEEEEEEC-TT-CCCHHHHHHHHHHH-HTT----CCEEEEEECCGGGS
T ss_pred -HHCCEEEEEEc-CC-CCcHHHHHHHHHHH-HcC----CCeEEEEEEeccCC
Confidence 35699999955 32 11111223333222 222 455 89999 9997
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.62 E-value=7.2e-08 Score=110.86 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=67.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--cC-------------------CCCceeEEEEEEeEECCeEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--DA-------------------FQPATDCIREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--s~-------------------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
.+|+|+|.+|+|||||+|+|++...... +. ..+.|.........+.+..+.||||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 7999999999999999999986432210 00 01112122223456688999999999996
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+.. . .+.+++ ..+|++++|++....- .......+.... ....|+++|+||+|+.
T Consensus 94 df~-------~----~~~~~l--~~aD~~IlVvDa~~g~----~~~t~~~~~~~~--~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 94 DFS-------E----DTYRTL--TAVDCCLMVIDAAKGV----EDRTRKLMEVTR--LRDTPILTFMNKLDRD 147 (529)
T ss_dssp TCC-------H----HHHHGG--GGCSEEEEEEETTTCS----CHHHHHHHHHHT--TTTCCEEEEEECTTSC
T ss_pred hHH-------H----HHHHHH--HHCCEEEEEEeCCccc----hHHHHHHHHHHH--HcCCCEEEEEcCcCCc
Confidence 541 1 122334 3569999996554321 122222222221 1247899999999986
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.59 E-value=1.1e-07 Score=112.65 Aligned_cols=116 Identities=14% Similarity=0.024 Sum_probs=69.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccc-----cc------C------CCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTE-----TD------A------FQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~-----vs------~------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
...+|+|+|.+|+|||||+|+|+...... +. + ....|.........+.+..+.||||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45799999999999999999998321110 00 0 1122333334455678999999999999653
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.... .+++. .+|++++|++..... .......++.+... ..+.++|+||+|+..
T Consensus 91 -------~~~~----~~~l~--~aD~~ilVvDa~~g~-~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 91 -------TIEV----ERSMR--VLDGAIVVFDSSQGV-EPQSETVWRQAEKY-----KVPRIAFANKMDKTG 143 (691)
T ss_dssp -------HHHH----HHHHH--HCSEEEEEEETTTCS-CHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred -------HHHH----HHHHH--HCCEEEEEEECCCCc-chhhHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 1122 22232 359999996554321 11222344433332 478999999999863
No 182
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.59 E-value=2.8e-08 Score=108.30 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|+||||||||+|.|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999999999986
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.59 E-value=6.2e-08 Score=108.33 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=71.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
.|+|||++|||||||+|.|++.... +...+.+|.........+.+ ..++++||||+.+.... ...+.....+.+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~----~~~L~~~fl~~~ 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE----GKGLGLEFLRHI 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG----SCCSCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhh----hhhhhHHHHHHH
Confidence 6899999999999999999987543 33343444444443444554 78999999999754211 100111111222
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 247 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t~~~~D~-~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
..++.+|+|++++ .....+. ...+.+...-..-..+|.++|+||+|..
T Consensus 234 --era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 234 --ARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp --TSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred --HHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 3568999997765 1101111 1122222211111247899999999975
No 184
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=2.3e-08 Score=109.87 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=53.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-----------------eEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-----------------~~l~LIDTPGl~d~~~ 229 (791)
++|+|||.||||||||+|+|++.. +.+..++.+|..+......+.+ ..+.|+||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 689999999999999999999876 5555555555554332333333 5799999999975421
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 261 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld 261 (791)
..+.+...+..++ ..+|++++|++..
T Consensus 82 ----~~~gl~~~fl~~i--r~ad~il~VvD~~ 107 (363)
T 1jal_A 82 ----KGEGLGNKFLANI--RETDAIGHVVRCF 107 (363)
T ss_dssp ----HHGGGTCCHHHHH--HTCSEEEEEEECS
T ss_pred ----ccchHHHHHHHHH--HhcCeEEEEEecC
Confidence 1111111222223 3569999995543
No 185
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.57 E-value=7.3e-08 Score=109.03 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=63.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCccc------------------------ccC------CCCceeEEEEEEeEECCeE
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTE------------------------TDA------FQPATDCIREVKGSVNGIK 215 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~------------------------vs~------~~~~Tt~~~~~~~~~~G~~ 215 (791)
.++|+++|.+|+|||||+|.|++..... +.+ ..+.|.++........++.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 3799999999999999999997422110 000 1123434433445667899
Q ss_pred EEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc----C--CCCcHHHHHHHHHHhccccccc-E
Q 003857 216 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS----M--GFSDFPLLKLMTEVFGTAIWFN-T 288 (791)
Q Consensus 216 l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t----~--~~~D~~llk~L~~~fg~~i~k~-v 288 (791)
+.||||||..+. ...+...+ ..+|++++|++++... . .....+.+..+. .. ..+ +
T Consensus 123 ~~iiDtPGh~~f-----------~~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~----~vp~i 184 (467)
T 1r5b_A 123 FSLLDAPGHKGY-----------VTNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQ----GINHL 184 (467)
T ss_dssp EEECCCCC----------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HT----TCSSE
T ss_pred EEEEECCCcHHH-----------HHHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-Hc----CCCEE
Confidence 999999998543 11122223 4679999996654321 0 012233333222 22 244 8
Q ss_pred EEEEeccCCCC
Q 003857 289 ILVMTHSSSTL 299 (791)
Q Consensus 289 IVVLTK~D~l~ 299 (791)
++|+||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999863
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.53 E-value=2.5e-07 Score=100.37 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=61.3
Q ss_pred ceEEEEEeecCCchHHHHhHhh------CCCcccccCCCCcee--------------------EEEEEE-----------
Q 003857 166 SIRILVLGKTGVGKSATINSIF------DQTKTETDAFQPATD--------------------CIREVK----------- 208 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl------G~~~a~vs~~~~~Tt--------------------~~~~~~----------- 208 (791)
...|+|+|++|+||||++|.|+ |..+..++.-...|. .+....
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~ 135 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 135 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHH
Confidence 4799999999999999999996 344444422111111 000000
Q ss_pred --------eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh
Q 003857 209 --------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF 280 (791)
Q Consensus 209 --------~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~f 280 (791)
..+.+.+++||||||+.+.. .. + . ..+|++++|++...... .+.++. ...
T Consensus 136 ~~~~~~~~~~~~~~~i~liDTpG~~~~~-------~~----~---~--~~aD~vl~Vvd~~~~~~----~~~l~~--~~~ 193 (341)
T 2p67_A 136 RARELMLLCEAAGYDVVIVETVGVGQSE-------TE----V---A--RMVDCFISLQIAGGGDD----LQGIKK--GLM 193 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTTHH-------HH----H---H--TTCSEEEEEECC----------CCCCH--HHH
T ss_pred HHHHHHHHhhccCCCEEEEeCCCccchH-------HH----H---H--HhCCEEEEEEeCCccHH----HHHHHH--hhh
Confidence 01457899999999997531 11 1 1 46799999965432211 011110 111
Q ss_pred cccccccEEEEEeccCCC
Q 003857 281 GTAIWFNTILVMTHSSST 298 (791)
Q Consensus 281 g~~i~k~vIVVLTK~D~l 298 (791)
..+.++|+||+|..
T Consensus 194 ----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 194 ----EVADLIVINKDDGD 207 (341)
T ss_dssp ----HHCSEEEECCCCTT
T ss_pred ----cccCEEEEECCCCC
Confidence 25788999999976
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.53 E-value=3.5e-07 Score=108.60 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=70.7
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCccc-----c------cC------CCCceeEEEEEEeEECC-------eEEEEE
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTE-----T------DA------FQPATDCIREVKGSVNG-------IKVTFI 219 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~-----v------s~------~~~~Tt~~~~~~~~~~G-------~~l~LI 219 (791)
....+|+|+|..|+|||||++.|+...... + .+ ....|.........+.+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 344799999999999999999997432111 0 00 11233333344455666 899999
Q ss_pred eCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 220 DTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 220 DTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
||||..+.. . .+..++ ..+|.+|+|++..... ......+++.+.. ...+.++|+||+|...
T Consensus 88 DTPG~~df~-------~----~~~~~l--~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~-----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFT-------I----EVERSM--RVLDGAVMVYCAVGGV-QPQSETVWRQANK-----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchH-------H----HHHHHH--HHCCEEEEEEeCCCCC-cHHHHHHHHHHHH-----cCCCEEEEEeCCCccc
Confidence 999996531 1 122233 2359999996554321 1112233333322 2478999999999863
No 188
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.51 E-value=1.4e-07 Score=108.04 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCcee-EEEEE------EeE----ECCeEEEEEeCCCCCCccccc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREV------KGS----VNGIKVTFIDTPGFLPSCVRN 231 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt-~~~~~------~~~----~~G~~l~LIDTPGl~d~~~~~ 231 (791)
....++|+|+|.+|||||||+|+|++...... ..+++. .+... ... ..+..+.|+||||......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-- 113 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-- 113 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT--
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH--
Confidence 34568999999999999999999998653311 111111 11111 011 1257899999999543211
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 232 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 232 ~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
+. ..++ ..+|++++|+++... .....++..+..... ..|+++|+||+|+..
T Consensus 114 ------~~---~~~l--~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 114 ------SH---QFFM--TRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENP 164 (535)
T ss_dssp ------TC---HHHH--HSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCT
T ss_pred ------HH---HHHc--cCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCccc
Confidence 01 1123 236999999655432 223345556655422 379999999999864
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.50 E-value=2.8e-07 Score=113.47 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=70.2
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCCCc------c----ccc-----CCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQTK------T----ETD-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~~~------a----~vs-----~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
....++|+++|.+|+|||||+|+|++... + ..+ ...+.|.+.........+..+.||||||..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed- 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD- 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-
Confidence 34568999999999999999999986310 0 000 0112233322233445678999999999832
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEeccCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 298 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~-vIVVLTK~D~l 298 (791)
....+...+ ..+|++++|++++... .....+.+..+... ..+ +|+|+||+|+.
T Consensus 372 ----------F~~~mi~ga--s~AD~aILVVDAtdGv-~~QTrEhL~ll~~l-----gIP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 ----------YVKNMITGA--AQMDGAILVVAATDGP-MPQTREHILLGRQV-----GVPYIIVFLNKCDMV 425 (1289)
T ss_dssp ----------HHHHHHHTS--CCCSEEEEEEETTTCS-CTTHHHHHHHHHHH-----TCSCEEEEEECCTTC
T ss_pred ----------HHHHHHHHH--hhCCEEEEEEcCCccC-cHHHHHHHHHHHHc-----CCCeEEEEEeecccc
Confidence 122233333 4689999997665422 12334444444332 356 78999999986
No 190
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.49 E-value=3.2e-08 Score=113.00 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=73.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 244 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk 244 (791)
.+.+|+|+|.+|+|||||+|+|.+..... ....+.|.++..+...+++..++|+||||..+.... ..+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~-----------~~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS-GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM-----------RAR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB-TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS-----------BCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc-ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH-----------HHH
Confidence 35799999999999999999998643221 222234444433444557889999999998654211 011
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 245 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 245 ~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.+ ..+|++++|++++... .....+.+..+... ..|+++++||+|+..
T Consensus 71 ~~--~~aD~aILVVda~~g~-~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 71 GA--QATDIVVLVVAADDGV-MPQTIEAIQHAKAA-----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp SS--BSCSSEEEEEETTTBS-CTTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred HH--hhCCEEEEEeecccCc-cHHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence 12 3579999997665422 12334444443332 478999999999864
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.49 E-value=1.1e-07 Score=103.76 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred CceEEEEEeecCCchHHHHhHhh
Q 003857 165 FSIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl 187 (791)
...+|+|+|.+|||||||+|.|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34799999999999999999995
No 192
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=4e-07 Score=105.87 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=44.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCccc-cc-CCCCceeEEEEEEe---EECCeEEEEEeCCCCCCcc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTE-TD-AFQPATDCIREVKG---SVNGIKVTFIDTPGFLPSC 228 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~-vs-~~~~~Tt~~~~~~~---~~~G~~l~LIDTPGl~d~~ 228 (791)
...+|+|+|+||||||||||+|+|..... +. ...++|+.+..+.. ...+..++||||||+.+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 34799999999999999999999987542 21 12233443432211 1256799999999999763
No 193
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.47 E-value=1.3e-08 Score=117.28 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=73.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEE-CCeEEEEEeCCCCCCccccchhhhHHHHHHHH
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 243 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~-~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik 243 (791)
.+.+|+|+|.+|+|||||+|+|.+...... ...+.|.++..+...+ .+..++||||||..+.... ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence 357899999999999999999997654433 2334444444344444 5678999999997543210 01
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 244 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 244 k~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++ ..+|++++|++++.. ...+..+.+..... ...|+++|+||+|+..
T Consensus 71 ~~~--~~aD~vILVVDa~dg----~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 71 RGT--QVTDIVILVVAADDG----VMKQTVESIQHAKD--AHVPIVLAINKCDKAE 118 (537)
T ss_dssp SSS--BSBSSCEEECBSSSC----CCHHHHHHHHHHHT--TTCCEEECCBSGGGTT
T ss_pred HHH--ccCCEEEEEEECCCC----ccHHHHHHHHHHHH--cCCcEEEEEecccccc
Confidence 112 357999999555432 12233444433322 2478999999999864
No 194
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.46 E-value=1.6e-07 Score=105.53 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=69.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhC------CCccccc--CCCC----------------------ceeEEEEE----EeEE
Q 003857 166 SIRILVLGKTGVGKSATINSIFD------QTKTETD--AFQP----------------------ATDCIREV----KGSV 211 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG------~~~a~vs--~~~~----------------------~Tt~~~~~----~~~~ 211 (791)
+..|+|+|++||||||++++|.+ ..+..++ .+.+ .|.+.... ....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999975 2333221 1100 11111000 0012
Q ss_pred CCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 212 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 212 ~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
.+.+++||||||+... +...+.++........+|.++||++. .+. . ..+..+ +.|.........+|
T Consensus 179 ~~~D~vIIDT~G~~~~-------~~~l~~~l~~i~~~~~~d~vllVvda--~~g-~---~~~~~~-~~~~~~~~~i~gvV 244 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-------EKGLLEEMKQIKEITNPDEIILVIDG--TIG-Q---QAGIQA-KAFKEAVGEIGSII 244 (432)
T ss_dssp SSCSEEEEECCCSCSS-------HHHHHHHHHHTTSSSCCSEEEEEEEG--GGG-G---GHHHHH-HHHHTTSCSCEEEE
T ss_pred hCCCEEEEcCCCCccc-------cHHHHHHHHHHHHHhcCcceeEEeec--ccc-H---HHHHHH-HHHhhcccCCeEEE
Confidence 5789999999999643 34445555543333478999999543 322 1 122222 33433210238899
Q ss_pred EeccCCC
Q 003857 292 MTHSSST 298 (791)
Q Consensus 292 LTK~D~l 298 (791)
+||+|..
T Consensus 245 lnK~D~~ 251 (432)
T 2v3c_C 245 VTKLDGS 251 (432)
T ss_dssp EECSSSC
T ss_pred EeCCCCc
Confidence 9999975
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.46 E-value=6.9e-08 Score=107.25 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=47.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-----------------eEEEEEeCCCCCC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLP 226 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-----------------~~l~LIDTPGl~d 226 (791)
...++|+|||.+|||||||+|+|+|... .++.++.+|..+......+.+ ..+.|+||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3457999999999999999999999865 555554555544433333332 3599999999976
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 260 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l 260 (791)
... ..+.+...+..++ ..+|++++|++.
T Consensus 99 ~as----~~~glg~~~l~~i--r~aD~Il~VvD~ 126 (396)
T 2ohf_A 99 GAH----NGQGLGNAFLSHI--SACDGIFHLTRA 126 (396)
T ss_dssp ------------CCHHHHHH--HTSSSEEEEEEC
T ss_pred ccc----hhhHHHHHHHHHH--HhcCeEEEEEec
Confidence 421 1222222333334 356999999554
No 196
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=1.4e-07 Score=104.68 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECC-----------------eEEEEEeCCCCCC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLP 226 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G-----------------~~l~LIDTPGl~d 226 (791)
....+|+|+|++|||||||+|.|+|...+.++.++.+|.++......+.| ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 34579999999999999999999998876777776667665555555554 4689999999976
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL 260 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~l 260 (791)
..... +.+...+...+ ..+|.+++|+++
T Consensus 98 ~~s~~----e~L~~~fl~~i--r~~d~il~Vvd~ 125 (392)
T 1ni3_A 98 GASTG----VGLGNAFLSHV--RAVDAIYQVVRA 125 (392)
T ss_dssp CCCSS----SSSCHHHHHHH--TTCSEEEEEEEC
T ss_pred CCcHH----HHHHHHHHHHH--HHHHHHHHHHhc
Confidence 43221 11111222233 357999999554
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.44 E-value=7.4e-08 Score=108.17 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred CceEEEEEeecCCchHHHHhHhh------CCCccccc--CCCCcee----------EEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD----------CIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~~~~Tt----------~~~~~~-----------------~ 209 (791)
.+..|+++|++||||||+++.|. |..+..++ .+.+... .+..+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999997 54444332 1111100 000000 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
...+.+++||||||..... .+...+.++........+|.+++| +|+.+. ......++.+.+.+ ....
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-----~d~~lm~el~~i~~~~~pd~vlLV--lDa~~g-q~a~~~a~~f~~~~-----~~~g 242 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-----EETKLLEEMKEMYDVLKPDDVILV--IDASIG-QKAYDLASRFHQAS-----PIGS 242 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-----CTTHHHHHHHHHHHHHCCSEEEEE--EEGGGG-GGGHHHHHHHHHHC-----SSEE
T ss_pred HhcCCCEEEEECCCCcccc-----CCHHHHHHHHHHHHhhCCcceEEE--EeCccc-hHHHHHHHHHhccc-----CCcE
Confidence 1236789999999986510 123334444443333467999999 554432 23345555555543 4678
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
||+||+|..
T Consensus 243 VIlTKlD~~ 251 (433)
T 3kl4_A 243 VIITKMDGT 251 (433)
T ss_dssp EEEECGGGC
T ss_pred EEEeccccc
Confidence 899999975
No 198
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.43 E-value=4e-07 Score=106.17 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=60.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc---------cC-----CCCceeEEEEEEeEEC-----CeEEEEEeCCCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET---------DA-----FQPATDCIREVKGSVN-----GIKVTFIDTPGFLP 226 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v---------s~-----~~~~Tt~~~~~~~~~~-----G~~l~LIDTPGl~d 226 (791)
-.+|+|+|..|+|||||+++|+....... +. ..+.|.........+. +..+.||||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 36999999999999999999986322111 00 0112222222333333 36899999999954
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ... +.+.+. .+|++++|++++.... ......+..... ...|+++|+||+|+..
T Consensus 84 F-------~~e----v~~~l~--~aD~aILVVDa~~gv~-~qt~~~~~~~~~-----~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 84 F-------SYE----VSRSLA--ACEGALLVVDAGQGVE-AQTLANCYTAME-----MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp G-------HHH----HHHHHH--HCSEEEEEEETTTCCC-THHHHHHHHHHH-----TTCEEEEEEECTTSTT
T ss_pred H-------HHH----HHHHHH--HCCEEEEEEECCCCCC-HHHHHHHHHHHH-----CCCCEEEeeeccCccc
Confidence 3 122 222332 2499999965543211 122222222222 2478999999999863
No 199
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.40 E-value=4.7e-07 Score=105.55 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=62.2
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccc---------cCC-----CCceeEEEEEEeEEC-----CeEEEEEeCCCCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTET---------DAF-----QPATDCIREVKGSVN-----GIKVTFIDTPGFLP 226 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~v---------s~~-----~~~Tt~~~~~~~~~~-----G~~l~LIDTPGl~d 226 (791)
-.+|+|+|.+|+|||||+|+|+....... +.. .+.|.........+. ...+.||||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 36999999999999999999975321111 000 111221111122222 26889999999965
Q ss_pred ccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 227 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 227 ~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.. . .+.+.+ ..+|++++|++++... ..+....+..... ...++++|+||+|+.
T Consensus 86 F~-------~----ev~r~l--~~aD~aILVVDa~~gv----~~qt~~~~~~a~~--~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 86 FS-------Y----EVSRAL--AACEGALLLIDASQGI----EAQTVANFWKAVE--QDLVIIPVINKIDLP 138 (600)
T ss_dssp GH-------H----HHHHHH--HTCSEEEEEEETTTBC----CHHHHHHHHHHHH--TTCEEEEEEECTTST
T ss_pred HH-------H----HHHHHH--HhCCEEEEEEECCCCc----cHHHHHHHHHHHH--CCCCEEEEEeccCcc
Confidence 31 1 222333 2459999996554321 1223332222221 247899999999986
No 200
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.39 E-value=3.4e-07 Score=94.93 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred CCCCceEEEEEeec---------CCchHHHHhHhhCC
Q 003857 162 DLDFSIRILVLGKT---------GVGKSATINSIFDQ 189 (791)
Q Consensus 162 ~~~~~l~IlLVGkt---------GvGKSTLINsLlG~ 189 (791)
.....++|+|+|.+ |||||||+|.|++.
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 34556999999999 99999999999984
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.36 E-value=4.3e-07 Score=109.77 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=66.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCC---------------CceeEEEEEEeEEC----------------CeE
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ---------------PATDCIREVKGSVN----------------GIK 215 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~---------------~~Tt~~~~~~~~~~----------------G~~ 215 (791)
.+|+|+|.+|+|||||+|+|++....+..... ..|.........+. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 69999999999999999999875433321111 11211111222232 678
Q ss_pred EEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEecc
Q 003857 216 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHS 295 (791)
Q Consensus 216 l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~ 295 (791)
+.||||||..+.. .. +..++ ..+|++|+|+++..... .....++..+.. ...+.++|+||+
T Consensus 100 i~liDTPG~~df~-------~~----~~~~l--~~aD~ailVvDa~~g~~-~qt~~~~~~~~~-----~~~p~ilviNK~ 160 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SE----VTAAL--RVTDGALVVVDTIEGVC-VQTETVLRQALG-----ERIKPVVVINKV 160 (842)
T ss_dssp EEEECCCCCCSSC-------HH----HHHHH--HTCSEEEEEEETTTBSC-HHHHHHHHHHHH-----TTCEEEEEEECH
T ss_pred EEEEECcCchhhH-------HH----HHHHH--HhCCEEEEEEeCCCCCC-HHHHHHHHHHHH-----cCCCeEEEEECC
Confidence 9999999997642 11 22233 24699999965543211 122233332222 147889999999
Q ss_pred CCC
Q 003857 296 SST 298 (791)
Q Consensus 296 D~l 298 (791)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 976
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.35 E-value=1.2e-07 Score=99.53 Aligned_cols=60 Identities=28% Similarity=0.376 Sum_probs=40.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
++|+|+|.+|||||||||+|+|.....++..+++|+....+. -+..+.|+||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccCcC
Confidence 699999999999999999999988777776655555543332 245789999999998643
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.35 E-value=3.3e-07 Score=100.88 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=54.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeE---------------------ECCeEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---------------------VNGIKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~---------------------~~G~~l~LIDTPGl~ 225 (791)
++|+|||.||||||||+|.|++.. ..+..++.+|......... ..+..+.|+||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999864 3344444444432221111 235679999999997
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 261 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld 261 (791)
...... +.+...+...+ ..+|++++|++..
T Consensus 81 ~~a~~~----~~lg~~fl~~i--r~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKG----EGLGNQFLAHI--REVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSS----SCTTHHHHHHH--HTCSEEEEEEECC
T ss_pred cccccc----chHHHHHHHHH--HhCCEEEEEEECC
Confidence 642211 11112222223 2469999995543
No 204
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.30 E-value=7.4e-07 Score=103.85 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=66.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeE--EEEEEeE----------------ECCeEEEEEeCCCCCCc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGS----------------VNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~--~~~~~~~----------------~~G~~l~LIDTPGl~d~ 227 (791)
..+|+|+|.+|+|||||+|+|++........ .+.|.. ....... +....+.||||||..+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4799999999999999999999754322111 122222 1111110 11225999999998654
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
... ..+.+ ..+|++++|++++.. ........++.+.. ...|+++|+||+|+..
T Consensus 84 ~~~-----------~~r~~--~~aD~aILVvDa~~G-v~~qT~e~l~~l~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTL-----------RKRGG--ALADLAILIVDINEG-FKPQTQEALNILRM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTS-----------BCSSS--BSCSEEEEEEETTTC-CCHHHHHHHHHHHH-----TTCCEEEEEECGGGST
T ss_pred HHH-----------HHHHH--hhCCEEEEEEECCCC-ccHhHHHHHHHHHH-----cCCeEEEEeccccccc
Confidence 211 00112 357999999666532 11122334444333 2478999999999864
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.30 E-value=1.1e-06 Score=99.93 Aligned_cols=119 Identities=26% Similarity=0.348 Sum_probs=65.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC------Cccccc-C-CCCc------e---e-EEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD-A-FQPA------T---D-CIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~------~~a~vs-~-~~~~------T---t-~~~~~~-----------------~ 209 (791)
.+-.|+|+|++|+|||||++.|.|. .+...+ . +... + + .+..+. .
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 3468999999999999999999753 122111 1 1100 0 0 011110 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHH---HHHh---cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK---KFIR---RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 283 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ik---k~l~---~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~ 283 (791)
...+.+++||||+|+.... ...+.+++ +.++ ...++-+||| +|..+. ......++.+.+.++
T Consensus 372 ~~~~~DvVLIDTaGrl~~~-------~~lm~EL~kiv~iar~l~~~~P~evLLv--LDattG-q~al~~ak~f~~~~~-- 439 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNK-------SHLMEELKKIVRVMKKLDVEAPHEVMLT--IDASTG-QNAVSQAKLFHEAVG-- 439 (503)
T ss_dssp HHTTCSEEEECCCCSCCCH-------HHHHHHHHHHHHHHHTTCTTCSSEEEEE--EEGGGT-HHHHHHHHHHHHHTC--
T ss_pred HhcCCCEEEEeCCCccchh-------hhHHHHHHHHHHHHHHhccCCCCeeEEE--ecCccc-HHHHHHHHHHHhhcC--
Confidence 1246789999999997542 22222222 2222 2347888888 554442 122334444444432
Q ss_pred ccccEEEEEeccCCC
Q 003857 284 IWFNTILVMTHSSST 298 (791)
Q Consensus 284 i~k~vIVVLTK~D~l 298 (791)
.+.+|+||.|..
T Consensus 440 ---itgvIlTKLD~t 451 (503)
T 2yhs_A 440 ---LTGITLTKLDGT 451 (503)
T ss_dssp ---CSEEEEECGGGC
T ss_pred ---CCEEEEEcCCCc
Confidence 456799999964
No 206
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.29 E-value=2.3e-06 Score=100.97 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=69.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCCcccc--c---------C------CCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQTKTET--D---------A------FQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~~a~v--s---------~------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
...+|+|+|.+|+|||||+|.|++...... + . ....|...........+..+.|+||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 347999999999999999999984322110 0 0 0122333444555667899999999998542
Q ss_pred cccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 228 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 228 ~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
...+ ..++. .+|.+++|+++... .......+++.+... ..+.++|+||+|..
T Consensus 88 -------~~~~----~~~l~--~ad~~ilVvD~~~g-~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 -------VGEI----RGALE--AADAALVAVSAEAG-VQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp -------HHHH----HHHHH--HCSEEEEEEETTTC-SCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred -------HHHH----HHHHh--hcCcEEEEEcCCcc-cchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 1222 22232 34899998554321 111122333333332 47899999999975
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.28 E-value=6.2e-07 Score=97.30 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=21.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|++|+|||||+|.|+|
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999983
No 208
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.22 E-value=2.1e-06 Score=93.25 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=65.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHh
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 247 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~ 247 (791)
+|+|+|.+||||||+++.+++............|..+...... ...++.|+||||-...... . + ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~-----~-l--~~~~yy- 70 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP-----S-Y--DSERLF- 70 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC-----S-H--HHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch-----h-h--hhhhhc-
Confidence 5899999999999999988865432211111222221111111 3478999999998643100 0 0 012233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHH-HHHHhcccccccEEEEEeccCCCC
Q 003857 248 RSPPDIVLYFERLDLISMGFSDFPLLKL-MTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 248 ~~~~dvVLlV~~ld~~t~~~~D~~llk~-L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
.++++++||.++... .......+.. +..........++++|.||+|+..
T Consensus 71 -r~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 71 -KSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp -TTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred -cCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 467999999554432 1111222211 222111112478999999999873
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.21 E-value=6.7e-07 Score=99.91 Aligned_cols=114 Identities=20% Similarity=0.178 Sum_probs=62.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCC----CCceeEEEEEEeEECC-eEEEEEeCCCCCCccccchhhhHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAF----QPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLS 241 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~----~~~Tt~~~~~~~~~~G-~~l~LIDTPGl~d~~~~~~~~n~~i~~~ 241 (791)
..|+|+|++|+|||||+|.|+|......+.+ ...|.. .+..+... ..++++|+||+.... ....+.++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~----~~~~~~L~~ 143 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTN----FPPDTYLEK 143 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSS----CCHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchH----HHHHHHHHH
Confidence 6999999999999999999999533222211 112221 11112122 268999999996431 112222222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 242 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 242 ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
+ .....+.+++ ++.......+..+++.+... ++++++|+||.|.+
T Consensus 144 ~----~L~~~~~~~~---lS~G~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 M----KFYEYDFFII---ISATRFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD 188 (413)
T ss_dssp T----TGGGCSEEEE---EESSCCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred c----CCCccCCeEE---eCCCCccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence 1 1122355444 33221112334555555543 47999999999975
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=6e-06 Score=88.19 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=66.3
Q ss_pred ceEEEEEeecCCchHHHHhHhh------CCCccccc--CCCCcee------------EEEEE-------------E--eE
Q 003857 166 SIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD------------CIREV-------------K--GS 210 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl------G~~~a~vs--~~~~~Tt------------~~~~~-------------~--~~ 210 (791)
+..|+++|++|+||||+++.|. |..+..++ ...+.+. .+... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999996 44444332 1111110 00000 0 01
Q ss_pred ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 003857 211 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 290 (791)
Q Consensus 211 ~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIV 290 (791)
..+++++||||||..... .+...+.++++......+|.+++|++.. +. ......++.+.+ . .....+
T Consensus 178 ~~~~D~ViIDTpg~~~~~-----~~~~l~~el~~i~~~~~~d~vllVvda~--~g-~~~~~~~~~~~~----~-~~i~gv 244 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-----EEAALLEEMKNIYEAIKPDEVTLVIDAS--IG-QKAYDLASKFNQ----A-SKIGTI 244 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-----CHHHHHHHHHHHHHHHCCSEEEEEEEGG--GG-GGHHHHHHHHHH----T-CTTEEE
T ss_pred hCCCCEEEEeCCCCcccc-----cHHHHHHHHHHHHHHhcCCEEEEEeeCC--ch-HHHHHHHHHHHh----h-CCCCEE
Confidence 156789999999997510 1223444443322223579999995543 21 122233333322 1 133788
Q ss_pred EEeccCCC
Q 003857 291 VMTHSSST 298 (791)
Q Consensus 291 VLTK~D~l 298 (791)
|+||+|..
T Consensus 245 Vlnk~D~~ 252 (297)
T 1j8m_F 245 IITKMDGT 252 (297)
T ss_dssp EEECGGGC
T ss_pred EEeCCCCC
Confidence 99999965
No 211
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.18 E-value=4.5e-07 Score=92.99 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.0
Q ss_pred ceEEEEEeecCCchHHHHhHhh-----CCCccccc
Q 003857 166 SIRILVLGKTGVGKSATINSIF-----DQTKTETD 195 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl-----G~~~a~vs 195 (791)
...++++|+.||||||++|.|+ |..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999998 87777664
No 212
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.09 E-value=1.1e-05 Score=94.32 Aligned_cols=81 Identities=25% Similarity=0.196 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCCCcccc--chhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 003857 214 IKVTFIDTPGFLPSCVR--NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 291 (791)
Q Consensus 214 ~~l~LIDTPGl~d~~~~--~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVV 291 (791)
-+++|+|.||+...... +......+...+.+++.. +..+++.+...+... .....++.+...-. .+.++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~---a~~~~l~la~~v~~--~g~rtI~V 220 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDI---ATTEALSMAQEVDP--EGDRTIGI 220 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCT---TTCHHHHHHHHHCS--SCCSEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchh---ccHHHHHHHHHHhh--cCCceEEE
Confidence 36899999999874322 112233455555555432 334556664333211 11234444444421 24789999
Q ss_pred EeccCCCCC
Q 003857 292 MTHSSSTLP 300 (791)
Q Consensus 292 LTK~D~l~p 300 (791)
+||+|.+.+
T Consensus 221 lTK~Dlv~~ 229 (608)
T 3szr_A 221 LTKPDLVDK 229 (608)
T ss_dssp EECGGGSSS
T ss_pred ecchhhcCc
Confidence 999999854
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=4e-06 Score=90.90 Aligned_cols=119 Identities=22% Similarity=0.314 Sum_probs=64.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCCC------ccccc-C-CCCcee----------EEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQT------KTETD-A-FQPATD----------CIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~~------~a~vs-~-~~~~Tt----------~~~~~~-----------------~ 209 (791)
.+-.|+|+|++|+|||||++.|.|.. +...+ + +..... .+..+. .
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34799999999999999999997531 11111 1 000000 000000 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
...+.+++++||+|+.... ...+.++........+|..++| +|..+. ......++.+.+.+ ..++
T Consensus 208 ~~~~~d~vliDtaG~~~~~-------~~l~~eL~~i~ral~~de~llv--LDa~t~-~~~~~~~~~~~~~~-----~it~ 272 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETN-------RNLMDEMKKIARVTKPNLVIFV--GDALAG-NAIVEQARQFNEAV-----KIDG 272 (328)
T ss_dssp HHHTCSEEEEEECCSCCTT-------TCHHHHHHHHHHHHCCSEEEEE--EEGGGT-THHHHHHHHHHHHS-----CCCE
T ss_pred HhccchhhHHhhccchhHH-------HHHHHHHHHHHHHhcCCCCEEE--EecHHH-HHHHHHHHHHHHhc-----CCCE
Confidence 1135678899999996542 1222333322222257889988 554443 12223344444332 3567
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+|+||.|..
T Consensus 273 iilTKlD~~ 281 (328)
T 3e70_C 273 IILTKLDAD 281 (328)
T ss_dssp EEEECGGGC
T ss_pred EEEeCcCCc
Confidence 899999964
No 214
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.04 E-value=1e-05 Score=93.45 Aligned_cols=113 Identities=9% Similarity=0.042 Sum_probs=68.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc-----c----------cCC------CCceeEEEEEEeEECCeEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE-----T----------DAF------QPATDCIREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~-----v----------s~~------~~~Tt~~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
-+|+|+|..++|||||.-+|+-....+ + .++ .+.|-......+.+++..+.||||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 599999999999999999996222111 0 000 0111122233467899999999999998
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
|.. .++.+.++ -.|.+++|++...- ....-..+++...+. ..|.++++||+|..
T Consensus 112 DF~-------~Ev~raL~------~~DgAvlVvda~~G-V~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 112 DFS-------EDTYRVLT------AVDSALVVIDAAKG-VEAQTRKLMDVCRMR-----ATPVMTFVNKMDRE 165 (548)
T ss_dssp GCS-------HHHHHHHH------SCSEEEEEEETTTB-SCHHHHHHHHHHHHT-----TCCEEEEEECTTSC
T ss_pred HHH-------HHHHHHHH------hcCceEEEeecCCC-cccccHHHHHHHHHh-----CCceEEEEecccch
Confidence 763 22333332 24888888433221 111122344444333 48999999999975
No 215
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.03 E-value=4.6e-06 Score=83.08 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=21.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+|+|+|.+|||||||+|.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 69999999999999999999864
No 216
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.95 E-value=2e-05 Score=88.54 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=68.4
Q ss_pred CceEEEEEeecCCchHHHHhHhh-------CCCccccc--CCCCceeE----------EEEEE-----------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIF-------DQTKTETD--AFQPATDC----------IREVK----------------- 208 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl-------G~~~a~vs--~~~~~Tt~----------~~~~~----------------- 208 (791)
.+..|+|+|++||||||++..|. |..+..++ ...+.+.+ +..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999997 76665542 22221110 00000
Q ss_pred eEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 003857 209 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 288 (791)
Q Consensus 209 ~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~v 288 (791)
....+++++||||||.... +...+.++........++.+++|++. .+. ......++. |.... ...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~-------~~~l~~~L~~~~~~~~p~~vllVvda--~~g-~~~~~~~~~----f~~~l-~i~ 243 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV-------DEAMMDEIKQVHASINPVETLFVVDA--MTG-QDAANTAKA----FNEAL-PLT 243 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT-------CHHHHHHHHHHHHHSCCSEEEEEEET--TBC-TTHHHHHHH----HHHHS-CCC
T ss_pred HHhCCCCEEEEECCCcccc-------cHHHHHHHHHHHHhhcCcceeEEeec--chh-HHHHHHHHH----HhccC-CCe
Confidence 0114779999999998643 23334444433222468999999544 332 122233333 33221 224
Q ss_pred EEEEeccCCC
Q 003857 289 ILVMTHSSST 298 (791)
Q Consensus 289 IVVLTK~D~l 298 (791)
.+|+||+|..
T Consensus 244 gvVlnK~D~~ 253 (433)
T 2xxa_A 244 GVVLTKVDGD 253 (433)
T ss_dssp CEEEECTTSS
T ss_pred EEEEecCCCC
Confidence 5799999975
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.89 E-value=5.9e-06 Score=88.56 Aligned_cols=125 Identities=24% Similarity=0.260 Sum_probs=65.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC------Cccccc-C-CCCce----------eEEEEEEe-----------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD-A-FQPAT----------DCIREVKG----------------- 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~------~~a~vs-~-~~~~T----------t~~~~~~~----------------- 209 (791)
.+-.|+|+|++|+|||||++.|.|. .+...+ + +.... ..+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999742 111111 0 10000 00101100
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
...+..+.++||+|+.+........-.+....+.+.+ ...|+.++++ +|..+. ......++.+.+.. ..++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal-~~~P~~~lLv--LDa~t~-~~~~~~~~~~~~~~-----~~t~ 251 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKAD-PEEPKEVWLV--LDAVTG-QNGLEQAKKFHEAV-----GLTG 251 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHC-TTCCSEEEEE--EETTBC-THHHHHHHHHHHHH-----CCSE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhh-cCCCCeEEEE--EcHHHH-HHHHHHHHHHHHHc-----CCcE
Confidence 1134567899999997542211111112222233322 2468888888 555442 12233444444332 3467
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+++||.|..
T Consensus 252 iivTh~d~~ 260 (304)
T 1rj9_A 252 VIVTKLDGT 260 (304)
T ss_dssp EEEECTTSS
T ss_pred EEEECCccc
Confidence 899999865
No 218
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.83 E-value=0.00011 Score=80.72 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG 188 (791)
.+-.|+|+|++|+|||||++.|.|
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 346899999999999999999975
No 219
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=2.3e-05 Score=88.33 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=40.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC---------------CcccccCCCCceeEEEEEEeEE---------C--CeEEEEE
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ---------------TKTETDAFQPATDCIREVKGSV---------N--GIKVTFI 219 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~---------------~~a~vs~~~~~Tt~~~~~~~~~---------~--G~~l~LI 219 (791)
...|.|+|++++|||||+|.|+|. .....+ ..++|..+......+ . ...++|+
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 368999999999999999999974 122221 222333332222222 1 3579999
Q ss_pred eCCCCCCcc
Q 003857 220 DTPGFLPSC 228 (791)
Q Consensus 220 DTPGl~d~~ 228 (791)
||||+.+..
T Consensus 146 DTeG~~~~~ 154 (447)
T 3q5d_A 146 DTQGTFDSQ 154 (447)
T ss_dssp EEECCCSSH
T ss_pred cCCcccccc
Confidence 999998763
No 220
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.81 E-value=2.2e-05 Score=88.02 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=65.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhC------CCccccc--CCCCcee------------EEEEEE-------------eE-
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD------QTKTETD--AFQPATD------------CIREVK-------------GS- 210 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG------~~~a~vs--~~~~~Tt------------~~~~~~-------------~~- 210 (791)
.+-.|+|+|++|+||||++..|.+ ..+..++ ...+... .+.... ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999853 2222221 1111110 010000 01
Q ss_pred -ECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 211 -VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 211 -~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
..+++++||||||.... +...+.++........+|.++||++. .+. ...+..+ +.|.... ....
T Consensus 177 ~~~~~DvVIIDTaG~l~~-------d~~l~~el~~i~~~~~pd~vlLVvDa--~tg----q~av~~a-~~f~~~l-~i~G 241 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI-------DEPLMGELARLKEVLGPDEVLLVLDA--MTG----QEALSVA-RAFDEKV-GVTG 241 (425)
T ss_dssp HHTTCSEEEEECCCCSSC-------CHHHHHHHHHHHHHHCCSEEEEEEEG--GGT----THHHHHH-HHHHHHT-CCCE
T ss_pred HHCCCCEEEEcCCCcccc-------cHHHHHHHHHhhhccCCceEEEEEec--cch----HHHHHHH-HHHHhcC-CceE
Confidence 15678999999998643 23334444333222368989999544 332 1233332 2233221 2466
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+|+||.|..
T Consensus 242 VIlTKlD~~ 250 (425)
T 2ffh_A 242 LVLTKLDGD 250 (425)
T ss_dssp EEEESGGGC
T ss_pred EEEeCcCCc
Confidence 799999864
No 221
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.77 E-value=0.00012 Score=78.31 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG 188 (791)
.+-.|+|+|++|+|||||++.|.|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
No 222
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.75 E-value=1.1e-05 Score=94.71 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=70.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCccc-----c------cCCC------CceeEEEEEEeEECCeEEEEEeCCCCCCccc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTE-----T------DAFQ------PATDCIREVKGSVNGIKVTFIDTPGFLPSCV 229 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~-----v------s~~~------~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~ 229 (791)
.||+|+|..++|||||.-+|+-....+ + .+.. +.|-........+++..+.||||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 479999999999999999996221111 1 0100 122233344567889999999999998762
Q ss_pred cchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCCC
Q 003857 230 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 299 (791)
Q Consensus 230 ~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l~ 299 (791)
. ++.+.+ .-.|.+++|++...- ....-..+++...+. ..|.++++||+|...
T Consensus 82 ------~----Ev~raL--~~~DgavlVVDa~~G-V~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 ------A----EVYRSL--SVLDGAILLISAKDG-VQAQTRILFHALRKM-----GIPTIFFINKIDQNG 133 (638)
T ss_dssp ------H----HHHHHH--TTCSEEECCEESSCT-TCSHHHHHHHHHHHH-----TCSCEECCEECCSSS
T ss_pred ------H----HHHHHH--HHhCEEEEEEeCCCC-CcHHHHHHHHHHHHc-----CCCeEEEEecccccc
Confidence 2 233334 235888888444321 111223455555444 378899999999763
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.73 E-value=4.9e-05 Score=81.05 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC-------CCccccc--CCCCceeE----------EEEEE-----------eEECCeE
Q 003857 166 SIRILVLGKTGVGKSATINSIFD-------QTKTETD--AFQPATDC----------IREVK-----------GSVNGIK 215 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG-------~~~a~vs--~~~~~Tt~----------~~~~~-----------~~~~G~~ 215 (791)
+-.|+|+|++|+||||+++.|.+ ..+..++ .+.+...+ +.... ....+.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 45899999999999999999963 2222221 11111100 00000 0124678
Q ss_pred EEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEecc
Q 003857 216 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHS 295 (791)
Q Consensus 216 l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~ 295 (791)
++|+||||+... ....+.++.+.+....++.+++|+ ++.+. ...+..+.+.|.. .....+|+||.
T Consensus 185 lvIiDT~G~~~~-------~~~~~~el~~~l~~~~~~~~~lVl--~at~~----~~~~~~~~~~~~~--l~~~giVltk~ 249 (296)
T 2px0_A 185 HVFVDTAGRNFK-------DPQYIDELKETIPFESSIQSFLVL--SATAK----YEDMKHIVKRFSS--VPVNQYIFTKI 249 (296)
T ss_dssp EEEEECCCCCTT-------SHHHHHHHHHHSCCCTTEEEEEEE--ETTBC----HHHHHHHTTTTSS--SCCCEEEEECT
T ss_pred EEEEeCCCCChh-------hHHHHHHHHHHHhhcCCCeEEEEE--ECCCC----HHHHHHHHHHHhc--CCCCEEEEeCC
Confidence 999999999643 234445555544333467788884 33321 2334444444442 23456788999
Q ss_pred CCC
Q 003857 296 SST 298 (791)
Q Consensus 296 D~l 298 (791)
|..
T Consensus 250 D~~ 252 (296)
T 2px0_A 250 DET 252 (296)
T ss_dssp TTC
T ss_pred Ccc
Confidence 965
No 224
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.67 E-value=0.00012 Score=87.00 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=65.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc--cCCC---------------CceeEEEEEEeEEC-------CeEEEEEeCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQ---------------PATDCIREVKGSVN-------GIKVTFIDTP 222 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v--s~~~---------------~~Tt~~~~~~~~~~-------G~~l~LIDTP 222 (791)
-+|+|+|..++|||||.-+|+-..-.+. +... +.|-....+...|. ++.+.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 5999999999999999999963221111 1111 11111222333443 5789999999
Q ss_pred CCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 223 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 223 Gl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld-~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
|.-|.. .++..+++- .|.+|+|++.. +.. ..-..+++...+. ..|.++++||+|..
T Consensus 94 GHvDF~-------~Ev~~aLr~------~DgavlvVDaveGV~--~qT~~v~~~a~~~-----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFT-------IEVERSLRV------LDGAVVVFCGTSGVE--PQSETVWRQANKY-----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCH-------HHHHHHHHH------CSEEEEEEETTTCSC--HHHHHHHHHHHHH-----TCCEEEEEECSSST
T ss_pred CCcccH-------HHHHHHHHH------hCeEEEEEECCCCCc--hhHHHHHHHHHHc-----CCCeEEEEcccccc
Confidence 998762 233333332 38888884332 221 1222444444443 47899999999986
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.56 E-value=1.7e-05 Score=85.06 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.9
Q ss_pred CceEEEEEeecCCchHHHHhHhhC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG 188 (791)
.+-.|+|+|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345899999999999999999964
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=3.3e-05 Score=83.04 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=33.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCC-------CceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~-------~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
-.++|+|++|||||||+|.|+|.....++.+. .+|+....+ ... .-.++||||+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HTS--GGLVADTPGFSSL 237 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EET--TEEEESSCSCSSC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hcC--CEEEecCCCcccc
Confidence 48999999999999999999997665554332 233322211 121 2389999999764
No 227
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.39 E-value=0.00026 Score=76.35 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=65.8
Q ss_pred CceEEEEEeecCCchHHHHhHhhC------CCccccc-C-CCCc-------------eeEEEEE-E--------------
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD------QTKTETD-A-FQPA-------------TDCIREV-K-------------- 208 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG------~~~a~vs-~-~~~~-------------Tt~~~~~-~-------------- 208 (791)
.+-.|+|+|++|+||||++..|.+ ..+..++ + ..+. ...+..+ .
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 345899999999999999999853 2222221 1 1110 0011111 0
Q ss_pred ---eEECCeEEEEEeCCCCCCccccchhhhHHHHHH---HHHHHh---cCCCCEEEEEEeccCccCCCCcHHHHHHHHHH
Q 003857 209 ---GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS---VKKFIR---RSPPDIVLYFERLDLISMGFSDFPLLKLMTEV 279 (791)
Q Consensus 209 ---~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~---ikk~l~---~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~ 279 (791)
....+++++||||||.... ....+.+ +...+. ...+|.+++|++.. +. ...++.+..
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~-------~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~--~~----~~~l~~~~~- 249 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQN-------KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT--TG----QNGVIQAEE- 249 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGG-------HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG--GT----HHHHHHHHH-
T ss_pred HHHHHhcCCCEEEEcCCCcccc-------cHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--Cc----HHHHHHHHH-
Confidence 0124678999999999643 1222223 222232 23578999995443 21 244555443
Q ss_pred hcccccccEEEEEeccCCC
Q 003857 280 FGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 280 fg~~i~k~vIVVLTK~D~l 298 (791)
|.... ...-+|+||.|..
T Consensus 250 ~~~~~-~i~GvVltk~d~~ 267 (320)
T 1zu4_A 250 FSKVA-DVSGIILTKMDST 267 (320)
T ss_dssp HTTTS-CCCEEEEECGGGC
T ss_pred HhhcC-CCcEEEEeCCCCC
Confidence 44332 3455799999964
No 228
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.16 E-value=0.00012 Score=77.93 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=64.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC------Cccccc-CC-CCcee----------EEEEEE-----------------e
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD-AF-QPATD----------CIREVK-----------------G 209 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~------~~a~vs-~~-~~~Tt----------~~~~~~-----------------~ 209 (791)
..-.|+++|++|+||||++..|.+. .+..++ +. .+.+. ....+. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999998542 222111 00 00000 000010 0
Q ss_pred EECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 003857 210 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 289 (791)
Q Consensus 210 ~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vI 289 (791)
...+.+++||||||.... +...+.++........++.+++|++.. +. .+.++.+. .|.... ....
T Consensus 177 ~~~~~D~viiDtpp~~~~-------d~~~~~~l~~~~~~~~~~~~~lv~~~~--~~----~~~~~~~~-~~~~~~-~i~g 241 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI-------DEPLMGELARLKEVLGPDEVLLVLDAM--TG----QEALSVAR-AFDEKV-GVTG 241 (295)
T ss_dssp HHHTCCEEEEECCCCSSC-------CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT----HHHHHHHH-HHHHHT-CCCE
T ss_pred HhCCCCEEEEeCCCCccc-------cHHHHHHHHHHhhhcCCCEEEEEEeCC--Cc----HHHHHHHH-HHhhcC-CCCE
Confidence 014678999999998643 223334443333323578888885543 21 23333332 222221 3456
Q ss_pred EEEeccCCC
Q 003857 290 LVMTHSSST 298 (791)
Q Consensus 290 VVLTK~D~l 298 (791)
+|+||+|..
T Consensus 242 ivlnk~d~~ 250 (295)
T 1ls1_A 242 LVLTKLDGD 250 (295)
T ss_dssp EEEECGGGC
T ss_pred EEEECCCCC
Confidence 799999865
No 229
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00031 Score=74.83 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=36.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCC-------ceeEEEEEEeEECCeEEEEEeCCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLP 226 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~-------~Tt~~~~~~~~~~G~~l~LIDTPGl~d 226 (791)
-.++|+|++|||||||+|.|. .....++.+.. +|+...... ..+ --.++||||+..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~--~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIP--FGK-GSFVGDTPGFSK 228 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEE--ETT-TEEEESSCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEE--cCC-CcEEEECcCcCc
Confidence 488999999999999999999 65554443322 333332222 211 237899999964
No 230
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.10 E-value=0.0041 Score=70.19 Aligned_cols=63 Identities=22% Similarity=0.215 Sum_probs=43.4
Q ss_pred eEEEEEeecCCchHHHHhHhh-------C----------CCcccc-cCCCCceeEEEEEE----eEE-CC--eEEEEEeC
Q 003857 167 IRILVLGKTGVGKSATINSIF-------D----------QTKTET-DAFQPATDCIREVK----GSV-NG--IKVTFIDT 221 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl-------G----------~~~a~v-s~~~~~Tt~~~~~~----~~~-~G--~~l~LIDT 221 (791)
..|.|+|.+++|||+|+|.|+ | ...+.+ ....++|+.+-... ... .| ..|+|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 688899999999999999775 2 234444 24456777654322 111 33 46999999
Q ss_pred CCCCCccc
Q 003857 222 PGFLPSCV 229 (791)
Q Consensus 222 PGl~d~~~ 229 (791)
.|+++...
T Consensus 148 EG~~d~~~ 155 (457)
T 4ido_A 148 QGTFDSQS 155 (457)
T ss_dssp CCBTCTTC
T ss_pred cCCCCccc
Confidence 99998743
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.06 E-value=0.00015 Score=79.42 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=36.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc-ccccCCCCc------eeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK-TETDAFQPA------TDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~-a~vs~~~~~------Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
-.++|+|++|||||||+|.|+|... ..++.+... |+..... +.+.. ...++||||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i-~~v~q-~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL-YHFPH-GGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE-EECTT-SCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE-EEECC-CCEecCcccHHHh
Confidence 4899999999999999999999876 544433211 2211111 11211 2367999998654
No 232
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.00028 Score=75.00 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=36.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCC-------ceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~-------~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
-.++|+|++|+|||||+|.|.|.....++.+.. .|+...... .. ..-.++||||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FD-FGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CT-TSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cC-CCCEEEECcCCCcc
Confidence 478999999999999999999976655443321 232222111 11 12378999998754
No 233
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.96 E-value=0.0042 Score=67.62 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=50.9
Q ss_pred eeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-------CCCcHHHH
Q 003857 201 TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-------GFSDFPLL 273 (791)
Q Consensus 201 Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~-------~~~D~~ll 273 (791)
|..+......+++..+.|+||+|-. .-..+ ...|. .++++++||.+++.+.. ...-.+.+
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe--------~~R~~---w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~ 214 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQR--------SERKX---WVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI 214 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCH--------HHHHH---HHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCcc--------ccccc---HHHHh--ccCCEEEEEEECCccccccccccccchHHHHH
Confidence 3344555566788999999999972 11222 22233 47899999987763211 01112344
Q ss_pred HHHHHHhccc--ccccEEEEEeccCCC
Q 003857 274 KLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 274 k~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+.+..... ...++++++||+|+.
T Consensus 215 ~~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 215 AVFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEEECchhh
Confidence 4444444322 246899999999975
No 234
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.94 E-value=0.0031 Score=68.28 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=51.7
Q ss_pred eeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-------CCCcHHHH
Q 003857 201 TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-------GFSDFPLL 273 (791)
Q Consensus 201 Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~-------~~~D~~ll 273 (791)
|..+......+++..+.++||+|-... .. ....|. .++++++||.+++.+.. ...-.+.+
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~--------R~---~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~ 220 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSE--------RR---KWIHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESK 220 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHH--------HT---TGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhH--------HH---HHHHHh--CCCCEEEEEEECccccccccccccHhHHHHHH
Confidence 334555666778999999999997211 11 111233 46899999987763221 11112344
Q ss_pred HHHHHHhccc--ccccEEEEEeccCCC
Q 003857 274 KLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 274 k~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+.+..... ...++++++||+|+.
T Consensus 221 ~~~~~i~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 221 ALFRTIITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred HHHHHHhhhhccCCceEEEEEECchhh
Confidence 5555554322 246899999999975
No 235
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.78 E-value=0.0023 Score=69.97 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=51.2
Q ss_pred eEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-------CCCcHHHHH
Q 003857 202 DCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-------GFSDFPLLK 274 (791)
Q Consensus 202 t~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~-------~~~D~~llk 274 (791)
..+......+++..+.++||+|-... ...+ ..|. ..+++|+||++++.... ...-.+...
T Consensus 181 ~Gi~~~~~~~~~~~l~iwDt~GQe~~--------r~~w---~~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~ 247 (353)
T 1cip_A 181 TGIVETHFTFKDLHFKMFDVGGQRSE--------RKKW---IHCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 247 (353)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSGGG--------GGGG---GGGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred eceEEEEEeeCCeeEEEEeCCCchhh--------hHHH---HHHH--hcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence 33445556677899999999997422 1111 1233 46899999988776421 011123444
Q ss_pred HHHHHhccc--ccccEEEEEeccCCC
Q 003857 275 LMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 275 ~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
.+..+.... ...|+++|+||+|+.
T Consensus 248 ~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 248 LFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHcCccccCCcEEEEEECcCch
Confidence 555544321 247899999999975
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.24 E-value=0.00029 Score=71.08 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=38.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc-ccccCCCCceeE-EEEEEeEECCeEEEEEeCCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK-TETDAFQPATDC-IREVKGSVNGIKVTFIDTPGFL 225 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~-a~vs~~~~~Tt~-~~~~~~~~~G~~l~LIDTPGl~ 225 (791)
-.|+|+|++|||||||+|.|++... ...... +.||+ ... ++.+|..+.++|+..|.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~v-s~TTR~p~~--gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPV-PYTTRPPRK--SEEDGKEYHFISTEEMT 77 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCC-CEECSCCCT--TCCTTSSCEECCHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeee-cccccCCcC--CeeccccceeccHHHhh
Confidence 5789999999999999999997643 122333 33433 332 34677777777776663
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.42 E-value=0.0054 Score=60.27 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=21.1
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
+++|+|++|+|||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.37 E-value=0.0053 Score=60.87 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=20.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.33 E-value=0.0061 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.|+|+|++|+||||+++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998753
No 240
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.10 E-value=0.0076 Score=59.81 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998854
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.09 E-value=0.042 Score=53.43 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=58.3
Q ss_pred EEEEE-eecCCchHHHHhHhh------CCCcccccC-CCCcee--------EEEEEEe-----------EECCeEEEEEe
Q 003857 168 RILVL-GKTGVGKSATINSIF------DQTKTETDA-FQPATD--------CIREVKG-----------SVNGIKVTFID 220 (791)
Q Consensus 168 ~IlLV-GktGvGKSTLINsLl------G~~~a~vs~-~~~~Tt--------~~~~~~~-----------~~~G~~l~LID 220 (791)
.|+|. ++.|+||||+.-.|. |..+..++. .....+ ....... ....++++|||
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46666 788999999887663 444444421 111110 0011110 01357899999
Q ss_pred CCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCC
Q 003857 221 TPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSS 297 (791)
Q Consensus 221 TPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~ 297 (791)
||+.... .....+. .+|.++++...+... ..-..+++.+.+........++.+|+|+++.
T Consensus 83 ~~~~~~~---------~~~~~l~------~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 83 GAGSLSV---------ITSAAVM------VSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp CCSSSSH---------HHHHHHH------HCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCCCCH---------HHHHHHH------HCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 9987521 1112221 248898886555432 1222344444432111112355899999984
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.06 E-value=0.014 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.-.|+|+|++|+||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999986
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.81 E-value=0.012 Score=57.48 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=21.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.|+|+|++|+||||+++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 47999999999999999999875
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.80 E-value=0.0093 Score=58.16 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.|+|+|++|+||||+++.|+|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998754
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.77 E-value=0.0098 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=21.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999998854
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.76 E-value=0.013 Score=58.16 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...|+|+|++|+|||||++.|.|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999874
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.73 E-value=0.014 Score=59.33 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.73 E-value=0.013 Score=60.06 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
=.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999999864
No 249
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.24 Score=55.53 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=45.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+--|+|.|+||+|||+++.+|.++. +.++..++.+-+...... ..++.++.+-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~----------------------~~~fi~v~~s~l~sk~vG---esek~ir~lF~~ 270 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT----------------------SATFLRIVGSELIQKYLG---DGPRLCRQIFKV 270 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH----------------------TCEEEEEESGGGCCSSSS---HHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh----------------------CCCEEEEEHHHhhhccCc---hHHHHHHHHHHH
Confidence 3579999999999999999998642 233455555555543221 123333343333
Q ss_pred HhcCCCCEEEEEEeccCc
Q 003857 246 IRRSPPDIVLYFERLDLI 263 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~ 263 (791)
... ...+|||++.+|+.
T Consensus 271 Ar~-~aP~IIfiDEiDai 287 (437)
T 4b4t_I 271 AGE-NAPSIVFIDEIDAI 287 (437)
T ss_dssp HHH-TCSEEEEEEEESSS
T ss_pred HHh-cCCcEEEEehhhhh
Confidence 322 34688999888864
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.62 E-value=0.01 Score=59.07 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.8
Q ss_pred EEEEeecCCchHHHHhHhhCCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~ 190 (791)
|+|+||+||||||+++.|+.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998653
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.58 E-value=0.11 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.55 E-value=0.012 Score=59.81 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
-.++|+|++|||||||++.|+|...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999998643
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.52 E-value=0.019 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+|+|+|.+|||||||+|.|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 79999999999999999999754
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.47 E-value=0.016 Score=56.01 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|+|++|+|||||++.+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4789999999999999998764
No 255
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.23 Score=55.74 Aligned_cols=72 Identities=15% Similarity=0.397 Sum_probs=46.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+--|+|.|+||+|||+++.+|.++- |.++..++.+.+.+.... ..+..++.+...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~----------------------~~~~~~v~~s~l~sk~~G---ese~~ir~~F~~ 269 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI----------------------GANFIFSPASGIVDKYIG---ESARIIREMFAY 269 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCSSSS---HHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh----------------------CCCEEEEehhhhccccch---HHHHHHHHHHHH
Confidence 4589999999999999999998642 344566666766654321 123333333332
Q ss_pred HhcCCCCEEEEEEeccCc
Q 003857 246 IRRSPPDIVLYFERLDLI 263 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~ 263 (791)
... ...+|||++.+|..
T Consensus 270 A~~-~~P~IifiDEiDai 286 (437)
T 4b4t_L 270 AKE-HEPCIIFMDEVDAI 286 (437)
T ss_dssp HHH-SCSEEEEEECCCSS
T ss_pred HHh-cCCceeeeeccccc
Confidence 222 34688999888865
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.43 E-value=0.017 Score=59.30 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.43 E-value=0.018 Score=57.33 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=21.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..|+|+|++||||||+++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999998764
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.39 E-value=0.018 Score=56.79 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...|+|+|++|+||||+++.|.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 259
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.38 E-value=0.014 Score=60.80 Aligned_cols=23 Identities=57% Similarity=0.652 Sum_probs=21.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.|+|+|++|+|||||++.|+|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 58999999999999999999874
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.37 E-value=0.018 Score=59.21 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999864
No 261
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.36 E-value=0.018 Score=59.83 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 262
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.34 E-value=0.018 Score=60.23 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999964
No 263
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.32 E-value=0.018 Score=59.95 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999964
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.31 E-value=0.019 Score=59.24 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.31 E-value=0.018 Score=60.58 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999999954
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.30 E-value=0.019 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999964
No 267
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.26 E-value=0.019 Score=59.31 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.20 E-value=0.02 Score=58.78 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.18 E-value=0.02 Score=58.16 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999964
No 270
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.17 E-value=0.25 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
+..|+|.|++|+|||+++.+|..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 271
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.14 E-value=0.021 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 78999999999999999999964
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.14 E-value=0.021 Score=59.01 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+|||||++.|+|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.11 E-value=0.022 Score=59.11 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.10 E-value=0.022 Score=59.59 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+|||||++.|+|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.06 E-value=0.022 Score=59.28 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 89999999999999999999853
No 276
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.05 E-value=0.023 Score=59.21 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 277
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.01 E-value=0.023 Score=59.57 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999964
No 278
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.99 E-value=0.023 Score=59.84 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 279
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.96 E-value=0.024 Score=58.81 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCCc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
.++|+|++|+|||||++.|+|-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999999643
No 280
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.95 E-value=0.12 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||+++.+|...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999753
No 281
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.94 E-value=0.024 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=21.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..|+|+|++|+||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998754
No 282
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.90 E-value=0.025 Score=59.06 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 283
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.88 E-value=0.18 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=20.1
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|.|++|+||||+++.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999753
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.87 E-value=0.02 Score=57.79 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=23.8
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcccccCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETDAF 197 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs~~ 197 (791)
.++|+|++|+|||||++.|+|- ....+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 7899999999999999999987 4433333
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.86 E-value=0.018 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.|+|+|++|+|||||++.|+|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.77 E-value=0.024 Score=54.79 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|.|.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 479999999999999999998865
No 287
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.46 Score=53.72 Aligned_cols=73 Identities=15% Similarity=0.341 Sum_probs=45.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+--|+|.|+||+|||++..+|.++- +.++..++.+.+...... ..++.++.+-..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~----------------------~~~fi~vs~s~L~sk~vG---esek~ir~lF~~ 297 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT----------------------DATFIRVIGSELVQKYVG---EGARMVRELFEM 297 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGCCCSSS---HHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc----------------------CCCeEEEEhHHhhcccCC---HHHHHHHHHHHH
Confidence 3589999999999999999998642 233455555555543221 123333333332
Q ss_pred HhcCCCCEEEEEEeccCcc
Q 003857 246 IRRSPPDIVLYFERLDLIS 264 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~t 264 (791)
... ...+|||++.+|...
T Consensus 298 Ar~-~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 298 ART-KKACIIFFDEIDAVG 315 (467)
T ss_dssp HHH-TCSEEEEEECCTTTS
T ss_pred HHh-cCCceEeeccccccc
Confidence 222 346888988888653
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.70 E-value=0.025 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.|+|+|++|+||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3688999999999999999985
No 289
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.70 E-value=0.021 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 389999999999999999999854
No 290
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.58 E-value=0.029 Score=61.15 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.|+|+|++|+|||||+|.|+|.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 489999999999999999999853
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.56 E-value=0.025 Score=60.56 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|+|-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 48999999999999999999864
No 292
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.54 E-value=0.24 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|++|+||||++.+|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 293
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.21 Score=55.55 Aligned_cols=72 Identities=13% Similarity=0.315 Sum_probs=44.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
--|++.|+||+|||++..+|.++- +.++..++.+.+...... ..++.++.+-...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~----------------------~~~f~~v~~s~l~sk~vG---ese~~vr~lF~~A 237 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT----------------------DCKFIRVSGAELVQKYIG---EGSRMVRELFVMA 237 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGSCSSTT---HHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh----------------------CCCceEEEhHHhhccccc---hHHHHHHHHHHHH
Confidence 469999999999999999998642 233445555555443221 1233333333322
Q ss_pred hcCCCCEEEEEEeccCcc
Q 003857 247 RRSPPDIVLYFERLDLIS 264 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~~t 264 (791)
.. ...+|+|++.+|+..
T Consensus 238 r~-~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 238 RE-HAPSIIFMDEIDSIG 254 (405)
T ss_dssp HH-TCSEEEEEESSSCCT
T ss_pred HH-hCCceEeeecchhhc
Confidence 22 346889998888653
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.50 E-value=0.023 Score=57.09 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=15.8
Q ss_pred eEEEEEeecCCchHHHHhHhh-CCC
Q 003857 167 IRILVLGKTGVGKSATINSIF-DQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl-G~~ 190 (791)
-.|+|+|++|+||||+++.|. |..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999999 763
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.49 E-value=0.034 Score=56.53 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.3
Q ss_pred eEEEEEeecCCchHHHHhHhh---CCCc
Q 003857 167 IRILVLGKTGVGKSATINSIF---DQTK 191 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl---G~~~ 191 (791)
..|+|+|++|+||||+++.|. |-..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 589999999999999999998 7543
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.49 E-value=0.026 Score=61.61 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.|+|+|++|+|||||+++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999874
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.47 E-value=0.033 Score=58.24 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-.++|+|++|+|||||++.|+|-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999965
No 298
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.46 E-value=0.03 Score=60.30 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||+|.|+|.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 299
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.35 Score=54.11 Aligned_cols=70 Identities=14% Similarity=0.357 Sum_probs=43.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHH
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 246 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l 246 (791)
--|++.|+||+|||+++.+|.++- +.++..++.+.+.+.... ..+..++.+-...
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~----------------------~~~~~~v~~~~l~~~~~G---e~e~~ir~lF~~A 261 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST----------------------KAAFIRVNGSEFVHKYLG---EGPRMVRDVFRLA 261 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCSSCS---HHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----------------------CCCeEEEecchhhccccc---hhHHHHHHHHHHH
Confidence 469999999999999999998642 334555666666544221 1222333332222
Q ss_pred hcCCCCEEEEEEeccC
Q 003857 247 RRSPPDIVLYFERLDL 262 (791)
Q Consensus 247 ~~~~~dvVLlV~~ld~ 262 (791)
.. ...+|+|++.+|.
T Consensus 262 ~~-~aP~IifiDEiD~ 276 (428)
T 4b4t_K 262 RE-NAPSIIFIDEVDS 276 (428)
T ss_dssp HH-TCSEEEEEECTHH
T ss_pred HH-cCCCeeechhhhh
Confidence 22 3468888887774
No 300
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.35 E-value=0.036 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999964
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.30 E-value=0.032 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999999754
No 302
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.30 E-value=0.033 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|+|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.22 E-value=0.03 Score=61.28 Aligned_cols=23 Identities=57% Similarity=0.652 Sum_probs=21.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.|+|+|+||+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999874
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.21 E-value=0.031 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.20 E-value=0.036 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|++|+||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999753
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.17 E-value=0.04 Score=58.99 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCceEEEEEeecCCchHHHHhHhhCC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..+..|+|+|++|+|||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44579999999999999999999874
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.01 E-value=0.023 Score=55.63 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.|+|+|++|+||||+++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.00 E-value=0.048 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999975
No 309
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.98 E-value=0.045 Score=51.10 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.7
Q ss_pred eEEEEEeecCCchHHHHhHh
Q 003857 167 IRILVLGKTGVGKSATINSI 186 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsL 186 (791)
..|+|+|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 310
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.92 E-value=0.04 Score=63.06 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|+||+|||||+|+|+|.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999984
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.90 E-value=0.045 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|++|+||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 312
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.88 E-value=0.034 Score=62.07 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=21.1
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.|+|+|+||+|||||+++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999874
No 313
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.87 E-value=0.48 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+||||++.+|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 58999999999999999999763
No 314
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.82 E-value=0.036 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.81 E-value=0.047 Score=55.61 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...|+|+|++|+||||+++.|.|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999763
No 316
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.77 E-value=0.033 Score=55.57 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=57.2
Q ss_pred EEEEE-eecCCchHHHHhHhh------CCCccccc-CCCCcee----------EEEE---EEeEECCeEEEEEeCCCC-C
Q 003857 168 RILVL-GKTGVGKSATINSIF------DQTKTETD-AFQPATD----------CIRE---VKGSVNGIKVTFIDTPGF-L 225 (791)
Q Consensus 168 ~IlLV-GktGvGKSTLINsLl------G~~~a~vs-~~~~~Tt----------~~~~---~~~~~~G~~l~LIDTPGl-~ 225 (791)
.|+|+ ++.|+||||+.-.|. | .+..++ +.....+ .+.. .......++++|||||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 35554 789999999887663 4 444432 1111111 0000 000113578999999997 4
Q ss_pred CccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEeccCCC
Q 003857 226 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 298 (791)
Q Consensus 226 d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~~~D~~llk~L~~~fg~~i~k~vIVVLTK~D~l 298 (791)
.. ..... + ..+|.++++...+..... .-..+++.+.+.. ..+..+|+|+.+..
T Consensus 81 ~~---------~~~~~----l--~~aD~viiv~~~~~~~~~-~~~~~~~~l~~~~----~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 81 DE---------DLEAL----A--DGCDLLVIPSTPDALALD-ALMLTIETLQKLG----NNRFRILLTIIPPY 133 (209)
T ss_dssp SS---------HHHHH----H--HTSSEEEEEECSSHHHHH-HHHHHHHHHHHTC----SSSEEEEECSBCCT
T ss_pred cH---------HHHHH----H--HHCCEEEEEecCCchhHH-HHHHHHHHHHhcc----CCCEEEEEEecCCc
Confidence 32 11111 2 135899888655543220 1113334444321 24578999999753
No 317
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.75 E-value=0.055 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|++|+||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.74 E-value=0.074 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhCC
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
......|+|+|.+|+||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344578999999999999999999885
No 319
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.69 E-value=0.051 Score=59.55 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999999964
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.67 E-value=0.05 Score=54.38 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
-.++|+|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.63 E-value=0.046 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
No 322
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.19 Score=56.40 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=43.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCcccccCCCCceeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHH
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 245 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~vs~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~ 245 (791)
+.-|+|.|+||+|||++..+|.++- +.++..++.+.+...... ..++.++.+-..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~----------------------~~~f~~v~~s~l~~~~vG---ese~~ir~lF~~ 269 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT----------------------NATFLKLAAPQLVQMYIG---EGAKLVRDAFAL 269 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGCSSCSS---HHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh----------------------CCCEEEEehhhhhhcccc---hHHHHHHHHHHH
Confidence 3589999999999999999998642 233455555555443221 122333333322
Q ss_pred HhcCCCCEEEEEEeccCc
Q 003857 246 IRRSPPDIVLYFERLDLI 263 (791)
Q Consensus 246 l~~~~~dvVLlV~~ld~~ 263 (791)
... ...+|||++.+|..
T Consensus 270 A~~-~aP~IifiDEiDal 286 (434)
T 4b4t_M 270 AKE-KAPTIIFIDELDAI 286 (434)
T ss_dssp HHH-HCSEEEEEECTHHH
T ss_pred HHh-cCCeEEeecchhhh
Confidence 222 24588898888754
No 323
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.58 E-value=0.16 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhC
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
...++.|+|+|++|+|||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45568999999999999999999865
No 324
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.54 E-value=0.052 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 78999999999999999999864
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.51 E-value=0.053 Score=59.31 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 326
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.50 E-value=0.42 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||++..+|..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999863
No 327
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.42 E-value=0.22 Score=54.24 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=17.8
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
-.+|+|++|+||||++++|.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999985
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.38 E-value=0.059 Score=50.65 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.2
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.38 E-value=0.051 Score=53.35 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|++|+||||++|.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.35 E-value=0.055 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
.+|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 331
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.32 E-value=0.057 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 78999999999999999999964
No 332
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.32 E-value=0.067 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.3
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
....|+|+|++|+|||||++.|.|.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999874
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.31 E-value=0.045 Score=59.33 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.-+++|+|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999885
No 334
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.31 E-value=0.16 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCceEEEEEeecCCchHHHHhHhhC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
..+.-|+|.|+||+|||++..+|..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788899999999999999975
No 335
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.30 E-value=0.059 Score=59.07 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999999964
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.27 E-value=0.059 Score=59.49 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 78999999999999999999965
No 337
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.17 E-value=0.061 Score=59.11 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 78999999999999999999964
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.16 E-value=0.07 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|.|+|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 339
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.09 E-value=0.064 Score=58.98 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999999964
No 340
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.08 E-value=0.39 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...|+|.|++|+|||++..+|...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 368999999999999999998753
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.06 E-value=0.076 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|++|+||||+++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.01 E-value=0.085 Score=51.58 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.7
Q ss_pred CCCCCceEEEEEeecCCchHHHHhHhhC
Q 003857 161 PDLDFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 161 ~~~~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
.....++.|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445567999999999999999998853
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.00 E-value=0.085 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
+..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999853
No 344
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.85 E-value=0.054 Score=58.99 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 78999999999999999999964
No 345
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.84 E-value=0.074 Score=58.85 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.3
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 79999999999999999999853
No 346
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.80 E-value=0.079 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 347
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.73 E-value=0.081 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.53 E-value=0.094 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.6
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|.+|+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.50 E-value=0.092 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.0
Q ss_pred ceEEEEEeecCCchHHHHhHhh
Q 003857 166 SIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl 187 (791)
+..|+|+|.+|+||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 350
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.48 E-value=0.18 Score=55.10 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=49.8
Q ss_pred eeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC-------CCcHHHH
Q 003857 201 TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG-------FSDFPLL 273 (791)
Q Consensus 201 Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~-------~~D~~ll 273 (791)
|..+......+++..+.|+||+|-... .. ....|. ..+++|+||++++..... ..-....
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~--------r~---~w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~ 254 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSE--------RK---RWFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 254 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC------------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHH
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhh--------hh---hHHHHh--CCCCEEEEEEECccccccccccccccHHHHHH
Confidence 445555666778999999999998422 11 111222 367999999887763210 0112334
Q ss_pred HHHHHHhccc--ccccEEEEEeccCCC
Q 003857 274 KLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 274 k~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
..+....... ...++|+++||+|+.
T Consensus 255 ~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 255 NIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 4444444321 247899999999975
No 351
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.47 E-value=0.051 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.47 E-value=0.074 Score=51.00 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.4
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
..+|+|++|+||||++.+|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999984
No 353
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.46 E-value=0.095 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.4
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
....|+|+|++|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999875
No 354
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.39 E-value=0.089 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999964
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.37 E-value=0.07 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|.+|+||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 356
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.35 E-value=0.095 Score=55.48 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+..|+|+|++|+||||+.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999998753
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.29 E-value=0.1 Score=53.57 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
..|+|+|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999998
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.26 E-value=0.09 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=19.1
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
++|+|+|.+|+||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999985
No 359
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.19 E-value=0.095 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|++|+||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999964
No 360
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.17 E-value=0.075 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
-|+|+|++|+||||+++.|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999874
No 361
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.08 E-value=0.099 Score=59.25 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-+++|+|++|+|||||+|.|+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 48999999999999999998754
No 362
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.98 E-value=0.08 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|+|++|+|||||++.|++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999999974
No 363
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.94 E-value=0.082 Score=56.38 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|.+|+||||++|.|+|..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 67899999999999999999753
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.91 E-value=0.12 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.8
Q ss_pred ceEEEEEeecCCchHHHHhHhh
Q 003857 166 SIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl 187 (791)
+..|+|+|.+|+||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 365
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.89 E-value=0.078 Score=55.37 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEEeecCCchHHHHhHhhCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~ 189 (791)
|+|+|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 366
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.88 E-value=0.098 Score=60.09 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.=.++|+|++|+|||||++.|.|..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999864
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.86 E-value=0.1 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.5
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
++|+|+|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 368
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.83 E-value=0.13 Score=54.22 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCceEEEEEeecCCchHHHHhHhhC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
..+..|+|+|++|+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999974
No 369
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.79 E-value=0.21 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
-|+|+|++|+||||+++.|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999874
No 370
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.66 E-value=0.11 Score=59.99 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+||||+++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 79999999999999999999864
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.65 E-value=0.083 Score=51.71 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.59 E-value=0.13 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
+..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 373
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.59 E-value=0.12 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999853
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.52 E-value=0.15 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.1
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.+..|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3578999999999999999999764
No 375
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.49 E-value=0.16 Score=58.41 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
.=.++|+|++|+|||||++.|+|...
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35899999999999999999999643
No 376
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.42 E-value=0.68 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
.-|+|+|+||+|||+++++|.++
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999874
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.39 E-value=0.14 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
+..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999754
No 378
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.32 E-value=0.15 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.32 E-value=0.15 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.5
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
..|+|+|.+|+||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
No 380
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.28 E-value=0.1 Score=60.29 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+||||+++.|+|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999864
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.28 E-value=0.12 Score=51.28 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999853
No 382
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.25 E-value=0.091 Score=59.28 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-+++|+|++|+|||||++.|+|-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 489999999999999999999864
No 383
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.24 E-value=0.16 Score=49.19 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..+|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998654
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.24 E-value=0.14 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.21 E-value=0.14 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.0
Q ss_pred ceEEEEEeecCCchHHHHhHhh
Q 003857 166 SIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl 187 (791)
...|+|+|.+|+||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999985
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.20 E-value=0.15 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
+..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 387
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.20 E-value=0.11 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||++.|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999999763
No 388
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.16 E-value=0.12 Score=59.81 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+||||+++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 389
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.15 E-value=0.11 Score=60.20 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+||||+++.|+|-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 89999999999999999999864
No 390
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.15 E-value=0.11 Score=60.20 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+||||+++.|+|-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999864
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.06 E-value=0.14 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.5
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
++|+|+|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 392
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.05 E-value=0.16 Score=59.41 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a 192 (791)
=.++|+|++|+|||||++.|.|....
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 48999999999999999999996543
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.02 E-value=0.15 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
+..|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 394
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.91 E-value=0.12 Score=56.05 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=22.0
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-+++|+|++|+|||||++.|+|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999863
No 395
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.89 E-value=0.12 Score=59.91 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+||||+++.|+|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999864
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.89 E-value=0.19 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
....|+|+|.+|+||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998753
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.88 E-value=0.17 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhC
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
...+..|+|+|.+|+||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457999999999999999999865
No 398
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.87 E-value=0.13 Score=59.90 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTK 191 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~ 191 (791)
.=.++|+|++|+|||||++.|.|...
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 34899999999999999999998643
No 399
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.73 E-value=1.1 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||+++.+|..+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999643
No 400
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.66 E-value=0.17 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998853
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.62 E-value=0.18 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.4
Q ss_pred ceEEEEEeecCCchHHHHhHhh
Q 003857 166 SIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl 187 (791)
+++|+|.|++|+||||+...|.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999985
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.50 E-value=0.16 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.47 E-value=0.16 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.0
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 404
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=89.39 E-value=0.41 Score=53.15 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=52.0
Q ss_pred eeEEEEEEeEECCeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC-------CCcHHHH
Q 003857 201 TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG-------FSDFPLL 273 (791)
Q Consensus 201 Tt~~~~~~~~~~G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~~-------~~D~~ll 273 (791)
|..+......+++..+.|+||+|-... ... ...|. ..+++++||.+++.+... ..-....
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~--------r~~---w~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~ 270 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDE--------RRK---WIQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGG--------GGG---GGGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH
T ss_pred eeeeEEEEeecCCccceecccchhhhh--------hhh---hHhhc--cCCCEEEEEEECcccccccccccccchHHHHH
Confidence 444555566778999999999998432 111 11233 367999999888763210 1112344
Q ss_pred HHHHHHhccc--ccccEEEEEeccCCC
Q 003857 274 KLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 274 k~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
.++..+.... ...++++|+||+|+.
T Consensus 271 ~~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 271 NLFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHHHhcccCCCCeEEEEEEChhhh
Confidence 4555544321 246899999999974
No 405
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.38 E-value=0.13 Score=58.38 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+|||||++.|.|-
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999999874
No 406
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.37 E-value=0.18 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.4
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
..|+|+|.+|+||||+.+.|.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.35 E-value=0.19 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
++.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999964
No 408
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.32 E-value=0.12 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+||||+++.|.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.30 E-value=0.22 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 410
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.27 E-value=0.48 Score=56.78 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=20.2
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
.++|+|++|+||||+++.|.|-
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 6899999999999999999874
No 411
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.27 E-value=0.2 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.1
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998853
No 412
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.24 E-value=0.15 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=20.5
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|+|++|+|||||++.|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 413
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.15 E-value=0.17 Score=52.01 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.1
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|+|++|+||||+.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999964
No 414
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.93 E-value=0.2 Score=57.62 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.2
Q ss_pred EEEEEeecCCchHHHHhHhhCCCcc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a 192 (791)
.++|+|++|+|||||++.|+|-...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999996543
No 415
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.88 E-value=0.19 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=19.0
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 416
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.86 E-value=0.22 Score=57.13 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCCccccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTETD 195 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~vs 195 (791)
.++|+|++|+|||||++.|+|......+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 341 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEG 341 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 6899999999999999999997544333
No 417
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.84 E-value=0.19 Score=48.05 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.83 E-value=0.16 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 419
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.82 E-value=0.14 Score=64.99 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEEeecCCchHHHHhHhhCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~ 189 (791)
+|+|||+||+||||+++.|++-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 8999999999999999999974
No 420
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.81 E-value=0.57 Score=57.35 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=18.4
Q ss_pred eEEEEEeecCCchHHHHhHh
Q 003857 167 IRILVLGKTGVGKSATINSI 186 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsL 186 (791)
-.++|+|++|+||||+++.|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36889999999999999998
No 421
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.78 E-value=0.17 Score=50.35 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 48999999999999999999873
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.61 E-value=0.2 Score=50.22 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.53 E-value=0.16 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=15.9
Q ss_pred ceEEEEEeecCCchHHHHhHhh
Q 003857 166 SIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLl 187 (791)
+..|+|.|.+|+||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999985
No 424
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.52 E-value=0.11 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
+..|+|+|.+|+||||+.+.|+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999754
No 425
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.48 E-value=0.18 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
-+++|+|++|+|||||++.|.|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999999853
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.42 E-value=0.24 Score=57.71 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.7
Q ss_pred EEEEEeecCCchHHHHhHhhCCCccc
Q 003857 168 RILVLGKTGVGKSATINSIFDQTKTE 193 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~~a~ 193 (791)
.++|+|++|+|||||++.|+|.....
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 68999999999999999999965443
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.40 E-value=0.19 Score=47.64 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=17.8
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999984
No 428
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.33 E-value=0.2 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.7
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|++|+|||+++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.25 E-value=0.21 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.5
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
+.|+|+|.+|+||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999985
No 430
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.20 E-value=0.6 Score=48.33 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCceEEEEEeecCCchHHHHhHhhC
Q 003857 164 DFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
.....|+|.|++|+|||++...|..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999987754
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.19 E-value=0.24 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.4
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 432
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.15 E-value=0.23 Score=48.65 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|.|+|.+|+||||+++.|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 433
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.97 E-value=0.24 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|.+|+||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998753
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.86 E-value=0.26 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 435
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.72 E-value=0.13 Score=56.21 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998883
No 436
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.71 E-value=0.25 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|++|+||||++..|..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.69 E-value=0.25 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.2
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
++|+|+|+||+||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999888853
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.60 E-value=0.24 Score=46.71 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 439
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.57 E-value=1.5 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
+.-|+|.|+||+|||++..+|.++
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 440
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.28 E-value=0.28 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|++|+|||+++.+|..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.27 E-value=0.26 Score=49.62 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCCCceEEEEEeecCCchHHHHhHhhC
Q 003857 161 PDLDFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 161 ~~~~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
++......|.|+|.+|+||||+.+.|.+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445567999999999999999998864
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.23 E-value=0.25 Score=57.66 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEeecCCchHHHHhHhhCCCcc
Q 003857 169 ILVLGKTGVGKSATINSIFDQTKT 192 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~~~a 192 (791)
++|+|++|+|||||++.|+|-...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999996543
No 443
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.14 E-value=0.28 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.8
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
++.|+|.|++|+||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999863
No 444
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.09 E-value=1.1 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||+++.+|...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 445
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=86.97 E-value=8 Score=41.52 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=16.5
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
..+++-|+.|+||||+.-+|.
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA 47 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATG 47 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHH
Confidence 345566999999999987773
No 446
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.73 E-value=0.28 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=18.7
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
..|+|+|.+|+||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 359999999999999998885
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.70 E-value=0.32 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 448
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.53 E-value=0.22 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=19.9
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-+|+|+|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 449
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.52 E-value=0.82 Score=49.12 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|+||+|||++++.++.+
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.44 E-value=0.38 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.9
Q ss_pred CceEEEEEeecCCchHHHHhHhh
Q 003857 165 FSIRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLl 187 (791)
.++.|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 451
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.43 E-value=0.062 Score=55.10 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEeecCCchHHHHhHhhCC
Q 003857 169 ILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG~ 189 (791)
++|+|++|+||||++++|.|-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999874
No 452
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.40 E-value=0.35 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=21.0
Q ss_pred CceEEEEEeecCCchHHHHhHhhC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG 188 (791)
.++.|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998854
No 453
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.34 E-value=0.32 Score=53.49 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.|+|+|++|+||||+++.|.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999996
No 454
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.30 E-value=0.29 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|+|++|+|||||+..|++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 455
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.18 E-value=1.2 Score=53.66 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.++|+|++|+||||+++.|.|-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 36899999999999999999763
No 456
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.04 E-value=0.33 Score=61.54 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|||++|+||||+++.|+|.-
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 89999999999999999999864
No 457
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.04 E-value=0.22 Score=61.11 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.6
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|+|++|+|||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 458
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.01 E-value=0.35 Score=45.63 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
-+|+|.|.+|+||||+...|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999884
No 459
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.86 E-value=0.41 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.5
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
....|+|.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999653
No 460
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.82 E-value=0.43 Score=48.36 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
..|+|+|+||+||||+...|..+-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998654
No 461
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.80 E-value=2 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.4
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+||||++..|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999999753
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.78 E-value=0.48 Score=48.08 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.8
Q ss_pred CCCceEEEEEeecCCchHHHHhHhhC
Q 003857 163 LDFSIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 163 ~~~~l~IlLVGktGvGKSTLINsLlG 188 (791)
...+-.|+|+|+||+||+|....|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34445788899999999999888853
No 463
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.77 E-value=0.34 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..++|.|++|+||||++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 464
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.65 E-value=0.35 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.++|.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998874
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.53 E-value=0.32 Score=61.43 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.++|||++|+||||+++.|+|..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 466
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.47 E-value=0.29 Score=57.38 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=18.4
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
.++|+|++|+|||||+|.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999999875
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.21 E-value=0.29 Score=51.79 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=18.9
Q ss_pred EEEEeecCCchHHHHhHhhC
Q 003857 169 ILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 169 IlLVGktGvGKSTLINsLlG 188 (791)
++|+|++|+||||+++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999876
No 468
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.96 E-value=0.45 Score=44.25 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=20.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||++..+|...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988754
No 469
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.92 E-value=0.39 Score=47.71 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.4
Q ss_pred EEEEEeecCCchHHHHhHh
Q 003857 168 RILVLGKTGVGKSATINSI 186 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsL 186 (791)
..+|+|++|+||||++.+|
T Consensus 25 ~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 5678999999999999988
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.71 E-value=0.36 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
-.|+|.|++|+||||+++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 471
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.67 E-value=0.52 Score=51.20 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=35.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc---cC------CCCceeEEEEEEeEECCeEEEEEeCCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET---DA------FQPATDCIREVKGSVNGIKVTFIDTPGF 224 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v---s~------~~~~Tt~~~~~~~~~~G~~l~LIDTPGl 224 (791)
..|+|+|+||+||||+...|+.+-...+ ++ ..-+|..+.. .+..|++..+||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~--eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISV--PDRGGVPHHLLGEVDP 105 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCS--GGGTTCCEESSSCBCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCH--HHHcCCCEeeccccCc
Confidence 4799999999999999999976532211 11 1123332221 2346778888887776
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.42 E-value=0.33 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.7
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...|+|+|.+|+||||+++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 368999999999999999999874
No 473
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=84.26 E-value=0.57 Score=50.98 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=47.8
Q ss_pred eeEEEEEEeEEC------CeEEEEEeCCCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-------CC
Q 003857 201 TDCIREVKGSVN------GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-------GF 267 (791)
Q Consensus 201 Tt~~~~~~~~~~------G~~l~LIDTPGl~d~~~~~~~~n~~i~~~ikk~l~~~~~dvVLlV~~ld~~t~-------~~ 267 (791)
|+.+......+. ...+.|+||+|-.... ..+ ..+. ..+++++||.+++.+.+ ..
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r--------~~~---~~y~--~~~~~iI~v~dis~ydq~l~e~~~~~ 230 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNER--------RKW---IHLF--EGVTAVIFCAAISEYDQTLFEDEQKN 230 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGG--------GGT---GGGC--TTEEEEEEEEEGGGTTCBCSSCTTSB
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhh--------HHH---HHHh--CCCCEEEEEEECcccccccccccchh
Confidence 445555555553 4789999999984321 111 1222 36799999988763211 00
Q ss_pred CcHHHHHHHHHHhccc--ccccEEEEEeccCCC
Q 003857 268 SDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 298 (791)
Q Consensus 268 ~D~~llk~L~~~fg~~--i~k~vIVVLTK~D~l 298 (791)
.-......+..+.... ...++++|+||+|+.
T Consensus 231 s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 231 RMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 263 (354)
T ss_dssp HHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEECcchh
Confidence 1123344444443321 247899999999975
No 474
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.24 E-value=0.47 Score=47.10 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.2
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
-.++|+|++|+|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999977664
No 475
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.14 E-value=0.44 Score=44.37 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|++|+|||++...|..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 476
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.13 E-value=0.68 Score=50.12 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.7
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.++|.|+||+|||+|...+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988864
No 477
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=83.98 E-value=0.98 Score=55.19 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
-.++|+|++|+||||+++.|.+
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 3689999999999999998853
No 478
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.92 E-value=1.2 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.2
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|++|+|||+++.+|..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 479
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.87 E-value=4.5 Score=44.08 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=17.9
Q ss_pred eEEEEEeecCCchHHHHhHhh
Q 003857 167 IRILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLl 187 (791)
-.|+|.|++|+|||||.-.|+
T Consensus 75 ~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 368889999999999987765
No 480
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.81 E-value=0.4 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred ceEEEEEeecCCchHHHHhHhhCC
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
...++|+|++|+||||+++.|+..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 481
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=83.63 E-value=0.56 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred CCceEEEEEeecCCchHHHHhHh
Q 003857 164 DFSIRILVLGKTGVGKSATINSI 186 (791)
Q Consensus 164 ~~~l~IlLVGktGvGKSTLINsL 186 (791)
....+|+|+|.+|+||||++..|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34589999999999999999887
No 482
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.49 E-value=0.5 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|.|++|+|||+++.+|.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999999864
No 483
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.43 E-value=1.1 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.2
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|+||+|||++..+|..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 3899999999999999999975
No 484
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.42 E-value=0.41 Score=58.78 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.++|+|++|+|||||++.|.|
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999995
No 485
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.42 E-value=0.53 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|.|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 486
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.30 E-value=0.45 Score=48.44 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.6
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.|++.|+||+||||++.+|+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888864
No 487
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=83.20 E-value=0.57 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..|+|+|+||+||||+...|..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.06 E-value=0.6 Score=48.26 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|++|+|||+++..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998875
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.03 E-value=0.61 Score=50.31 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=38.2
Q ss_pred eEEEEEeecCCchHHHHhHhhCCCcccc---------cCCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 167 IRILVLGKTGVGKSATINSIFDQTKTET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~~a~v---------s~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
..|+|+|+||+||||+...|+..-...+ ..+.-+|..+.. .+..|++-.+||.-.+.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~--~E~~gvphhlid~~~~~e~ 71 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITA--EEMDGVPHHLIDIKDPSES 71 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCH--HHHTTCCEESSSCBCTTSC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCH--HHHcCCCEEEeccCChhhh
Confidence 4688999999999999999975432111 122223333221 2456788889998887654
No 490
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.95 E-value=0.67 Score=49.85 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=35.9
Q ss_pred ceEEEEEeecCCchHHHHhHhhCCCccc---cc------CCCCceeEEEEEEeEECCeEEEEEeCCCCCCc
Q 003857 166 SIRILVLGKTGVGKSATINSIFDQTKTE---TD------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 227 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG~~~a~---vs------~~~~~Tt~~~~~~~~~~G~~l~LIDTPGl~d~ 227 (791)
+..|+|+|+||+||||+...|...-... .+ ...-+|..+.. .+..|++-.+||.--+.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~--~E~~~v~hhlid~~~~~e~ 78 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNA--EELLAAPHRLLDIRDPSQA 78 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCH--HHHHHSCEETSSCBCTTSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCH--HHHcCCCEEEeccCCcccc
Confidence 3578999999999999999996432211 11 11123333221 1334666777777766554
No 491
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=82.76 E-value=0.61 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred ceEEEEEeecCCchHHHHhHhhC
Q 003857 166 SIRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 166 ~l~IlLVGktGvGKSTLINsLlG 188 (791)
...|.|.|.+|+||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.36 E-value=0.56 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.9
Q ss_pred eEEEEEeecCCchHHHHhHhhCCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~~ 190 (791)
.-|+|+|++|+||||+.+.|.++.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcC
Confidence 679999999999999999998764
No 493
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.28 E-value=0.97 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..++|+|++|+||||++..|...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 494
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.28 E-value=0.49 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEEeecCCchHHHHhHhh
Q 003857 168 RILVLGKTGVGKSATINSIF 187 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLl 187 (791)
..+|+|++|+||||++.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999996
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.26 E-value=0.58 Score=47.88 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.7
Q ss_pred CceEEEEEeecCCchHHHHhHhhCC
Q 003857 165 FSIRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 165 ~~l~IlLVGktGvGKSTLINsLlG~ 189 (791)
....|+|.|..|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999998754
No 496
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.24 E-value=0.55 Score=59.36 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.4
Q ss_pred EEEEEeecCCchHHHHhHhhCCC
Q 003857 168 RILVLGKTGVGKSATINSIFDQT 190 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG~~ 190 (791)
+|+|+|++|+||||+++.|+|-.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999854
No 497
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.23 E-value=0.63 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|+|+||+||||+...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999998864
No 498
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.10 E-value=3.1 Score=43.35 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEEeecCCchHHHHhHhhC
Q 003857 168 RILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 168 ~IlLVGktGvGKSTLINsLlG 188 (791)
.+++.|++|+|||+++.+|..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 467778899999999999964
No 499
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.96 E-value=0.6 Score=48.00 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.8
Q ss_pred eEEEEEeecCCchHHHHhHhhC
Q 003857 167 IRILVLGKTGVGKSATINSIFD 188 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG 188 (791)
..|+|.|++|+|||+++..|..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 500
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.87 E-value=0.59 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEeecCCchHHHHhHhhCC
Q 003857 167 IRILVLGKTGVGKSATINSIFDQ 189 (791)
Q Consensus 167 l~IlLVGktGvGKSTLINsLlG~ 189 (791)
..++|.|++|+||||++..|.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999753
Done!