BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003859
(791 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 171/276 (61%), Gaps = 7/276 (2%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V +DDIGG + + +KEMV PL +P F + + PPRG+LL GPPGTGKTLIARA+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA- 259
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
++ G F++ G +++SK GE+E L+ FEEA++N P+IIF DE+D +AP R
Sbjct: 260 --NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555
++ IVS LL LMDGL R V+++ ATNR ++ID ALRR GRFDRE + +P
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 556 ARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSD 615
R EIL IHT+ K +L+ ++A G+ GADL ALC+EAA++A R+K + D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE-QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 616 DKFLIDV-DSVTVEKYHFIEAMSTITPAAHRGATVH 650
+ +V +S+ V F A+S P+A R V
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 171/276 (61%), Gaps = 7/276 (2%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V +DDIGG + + +KEMV PL +P F + + PPRG+LL GPPGTGKTLIARA+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA- 259
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
++ G F++ G +++SK GE+E L+ FEEA++N P+IIF DE+D +AP R
Sbjct: 260 --NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555
++ IVS LL LMDGL R V+++ ATNR ++ID ALRR GRFDRE + +P
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 556 ARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSD 615
R EIL IHT+ K +L+ ++A G+ GADL ALC+EAA++A R+K + D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE-QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 616 DKFLIDV-DSVTVEKYHFIEAMSTITPAAHRGATVH 650
+ +V +S+ V F A+S P+A R V
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 171/276 (61%), Gaps = 7/276 (2%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V +DDIGG + + +KEMV PL +P F + + PPRG+LL GPPGTGKTLIARA+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA- 259
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
++ G F++ G +++SK GE+E L+ FEEA++N P+IIF DE+D +AP R
Sbjct: 260 --NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555
++ IVS LL LMDGL R V+++ ATNR ++ID ALRR GRFDRE + +P
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 556 ARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSD 615
R EIL IHT+ K +L+ ++A G+ GADL ALC+EAA++A R+K + D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE-QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 616 DKFLIDV-DSVTVEKYHFIEAMSTITPAAHRGATVH 650
+ +V +S+ V F A+S P+A R V
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 171/276 (61%), Gaps = 7/276 (2%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V +DDIGG + + +KEMV PL +P F + + PPRG+LL GPPGTGKTLIARA+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA- 259
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
++ G F++ G +++SK GE+E L+ FEEA++N P+IIF DE+D +AP R
Sbjct: 260 --NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555
++ IVS LL LMDGL R V+++ ATNR ++ID ALRR GRFDRE + +P
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 556 ARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSD 615
R EIL IHT+ K +L+ ++A G+ GADL ALC+EAA++A R+K + D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE-QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 616 DKFLIDV-DSVTVEKYHFIEAMSTITPAAHRGATVH 650
+ +V +S+ V F A+S P+A R V
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 15/231 (6%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA- 434
V+++DIGGL + L+E+V +P+ +PD F + +TP +GVL GPPG GKTL+A+A+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 435 -CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493
C A +F KG ++L+ W GE+E ++ +F++A++ P ++FFDE+D +A R
Sbjct: 534 ECQA-------NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
Query: 494 SSKQEQIHNS---IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550
+ +++ +L MDG+ ++ V +IGATNR D ID A+ RPGR D+ P
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 551 LPGCEARAEILDIHTRKWKQPPSRELKSE-LAASCVGYCGADLKALCTEAA 600
LP ++R IL + R K P ++++ E LA G+ GADL +C A
Sbjct: 647 LPDEKSRVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 222 bits (565), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 171/276 (61%), Gaps = 7/276 (2%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V +DD+GG + + +KEMV PL +P F + + PPRG+LL GPPGTGKTLIARA+A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA- 259
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
++ G F++ G +++SK GE+E L+ FEEA++N P+IIF DE+D +AP R
Sbjct: 260 --NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555
++ IVS LL LMDGL R V+++ ATNR ++ID ALRR GRFDRE + +P
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 556 ARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSD 615
R EIL IHT+ K +L+ ++A G+ GADL ALC+EAA++A R+K + D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE-QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 616 DKFLIDV-DSVTVEKYHFIEAMSTITPAAHRGATVH 650
+ +V +S+ V F A+S P+A R V
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 15/231 (6%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA- 434
V+++DIGGL + L+E+V +P+ +PD F + +TP +GVL GPPG GKTL+A+A+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 435 -CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493
C A +F KG ++L+ W GE+E ++ +F++A++ P ++FFDE+D +A R
Sbjct: 534 ECQA-------NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
Query: 494 SSKQEQIHNS---IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550
+ +++ +L MDG+ ++ V +IGATNR D ID A+ RPGR D+ P
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 551 LPGCEARAEILDIHTRKWKQPPSRELKSE-LAASCVGYCGADLKALCTEAA 600
LP ++R IL + R K P ++++ E LA G+ GADL +C A
Sbjct: 647 LPDEKSRVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 166/263 (63%), Gaps = 7/263 (2%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V +DD+GG + + +KEMV PL +P F + + PPRG+LL GPPGTGKTLIARA+A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA- 259
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
++ G F++ G +++SK GE+E L+ FEEA++N P+IIF DE+D +AP R
Sbjct: 260 --NETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555
++ IVS LL LMDGL R V+++ ATNR ++ID ALRR GRFDRE + +P
Sbjct: 316 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 556 ARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSD 615
R EIL IHT+ K +L+ ++A G+ GADL ALC+EAA++A R+K + D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLE-QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Query: 616 DKFLIDV-DSVTVEKYHFIEAMS 637
+ +V +S+ V F A+S
Sbjct: 435 ETIDAEVMNSLAVTMDDFRWALS 457
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 154/254 (60%), Gaps = 13/254 (5%)
Query: 368 QPLQVDE--SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTG 425
+ ++VDE +V ++DIGGL + + ++E+V PL +P+ F I PP+G+LL GPPGTG
Sbjct: 4 KAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTG 63
Query: 426 KTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDE 485
KTL+A+A+A + +F G++++ K++GE +K +F+ A+ PSIIF DE
Sbjct: 64 KTLLAKAVATETN-----ATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDE 118
Query: 486 IDGLAPVRSSK----QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPG 541
ID +A R+ ++ +++ LLA MDG D+RG V +IGATNR D +D A+ RPG
Sbjct: 119 IDAIAAKRTDALTGGDREVQRTLMQ-LLAEMDGFDARGDVKIIGATNRPDILDPAILRPG 177
Query: 542 RFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601
RFDR P P + R EIL IHTRK L+ E+A G GA+LKA+CTEA +
Sbjct: 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLE-EIAKMTEGCVGAELKAICTEAGM 236
Query: 602 RAFREKYPQVYTSD 615
A RE V D
Sbjct: 237 NAIRELRDYVTMDD 250
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 142/242 (58%), Gaps = 9/242 (3%)
Query: 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436
++D +GGL++ I +KE++ P+ +P+ F S I P+GV+L GPPGTGKTL+ARA+A
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
Query: 437 ASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK 496
F GA+++ K++GE R ++ LF A+ + PSIIF DEID + R
Sbjct: 206 TD-----CKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260
Query: 497 QEQIHNSIVSTLLAL---MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPG 553
+ + T+L L +DG ++ + +I ATNR+D +D AL RPGR DR+ FP P
Sbjct: 261 SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320
Query: 554 CEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613
ARAEIL IH+RK L+ ++A G GAD+K +CTEA + A RE+ V
Sbjct: 321 VAARAEILRIHSRKMNLTRGINLR-KVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379
Query: 614 SD 615
D
Sbjct: 380 ED 381
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 138/244 (56%), Gaps = 9/244 (3%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
++FD IGGL+E I L+E++ PL P+ F I PP+GVLL GPPGTGKTL+A+A+A
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
+F + ++ K++GE+ R ++ +F A+ ++P IIF DE+D + R
Sbjct: 237 ATIG-----ANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291
Query: 495 SKQEQIHNSIVSTLLAL---MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551
S+ I TL+ L MDG D+ GQ +I ATNR D +D AL RPGR DR+ PL
Sbjct: 292 SEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351
Query: 552 PGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611
P R EI IHT K K+ + ++ + S G+ GAD++ TEA A R+ +
Sbjct: 352 PNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSD-GFNGADIRNCATEAGFFAIRDDRDHI 410
Query: 612 YTSD 615
D
Sbjct: 411 NPDD 414
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 149/254 (58%), Gaps = 13/254 (5%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V++ D+GG + I+ L+E+V PLL P+ FA+ I PP+G+LL GPPGTGKTL ARA+A
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
+F G++++ K+VGE R ++ LFE A+ + IIFFDEID + R
Sbjct: 266 RTD-----ATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFD 320
Query: 496 KQEQIHNSIVSTLLAL---MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
N + T+L L +DG D RG + ++ ATNR + +D AL RPGR DR+ F LP
Sbjct: 321 DGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAAS-CVGYCGADLKALCTEAAIRAFREKYPQV 611
E RA I IH++ R ++ EL + C GA+L+++CTEA + A R + +V
Sbjct: 381 DLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-KV 437
Query: 612 YTSDDKFLIDVDSV 625
T D FL VD V
Sbjct: 438 ATEKD-FLKAVDKV 450
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 137/244 (56%), Gaps = 9/244 (3%)
Query: 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436
S+ DIGGL I +KE V PL +P+ + I PP+GV+L G PGTGKTL+A+A+A
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239
Query: 437 ASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK 496
S +F G++++ K++G+ R + +F+ A N PSI+F DEID + R
Sbjct: 240 TS-----ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS 294
Query: 497 QEQIHNSIVSTLLAL---MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPG 553
I T+L L +DG D RG V +I ATN+++ +D AL RPGR DR+ F P
Sbjct: 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 554 CEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613
+ +IL IHT K L++ L + GAD++A+CTEA + A RE+ QV
Sbjct: 355 LSTKKKILGIHTSKMNLSEDVNLET-LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413
Query: 614 SDDK 617
D K
Sbjct: 414 EDFK 417
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 154/269 (57%), Gaps = 14/269 (5%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V++ DIG L + + L + P+ PD F + + P GVLL GPPG GKTL+A+A+A
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
+++G ++F KG ++L+ +VGE+ER ++ +F+ A+ + P +IFFDE+D L P RS
Sbjct: 66 ---NESG--LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS 120
Query: 495 SKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGC 554
++ +V+ LL MDGL++R QV ++ ATNR D ID A+ RPGR D+ LP
Sbjct: 121 DRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 555 EARAEILDIHTRKWKQPP-SRELKSELAAS---CVGYCGADLKALCTEAAIRAFREKYPQ 610
R IL T+ +PP ++ E A C Y GADL AL EA+I A R++ +
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240
Query: 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639
+ ++K + V HF EA +
Sbjct: 241 QKSGNEK-----GELKVSHKHFEEAFKKV 264
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 15/231 (6%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA- 434
V+++DIGGL + L+E+V +P+ +PD F + +TP +GVL GPPG GKTL+A+A+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 435 -CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493
C A +F KG ++L+ W GE+E ++ +F++A++ P ++FFDE+D +A R
Sbjct: 72 ECQA-------NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124
Query: 494 SSKQEQIHNS---IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550
+ +++ +L MDG+ ++ V +IGATNR D ID A+ RPGR D+ P
Sbjct: 125 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
Query: 551 LPGCEARAEILDIHTRKWKQPPSRELKSE-LAASCVGYCGADLKALCTEAA 600
LP ++R IL + R K P ++++ E LA G+ GADL +C A
Sbjct: 185 LPDEKSRVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 11/254 (4%)
Query: 367 IQPLQVDE--SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGT 424
++ ++VDE + ++ D+GGL + I+ L E + P+ D F I P+G L+ GPPGT
Sbjct: 167 VKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGT 226
Query: 425 GKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFD 484
GKTL+ARA CAA +F ++ ++GE + ++ F A+ P+IIF D
Sbjct: 227 GKTLLARA--CAAQT---NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFID 281
Query: 485 EIDGLAPVRSSKQEQIHNSIVSTLLALM---DGLDSRGQVVLIGATNRVDAIDGALRRPG 541
E+D + R ++ + T+L L+ DG S +V ++ ATNRVD +D AL R G
Sbjct: 282 ELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSG 341
Query: 542 RFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601
R DR+ FPLP ++RA+IL IH+RK + ELA S + GA LKA+ EA +
Sbjct: 342 RLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQ-ELARSTDEFNGAQLKAVTVEAGM 400
Query: 602 RAFREKYPQVYTSD 615
A R V D
Sbjct: 401 IALRNGQSSVKHED 414
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 12/250 (4%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+F D+GG E I+ LKE+V F L P F P+G+LL GPPGTGKTL+ARA+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A+ V F+ G+D + +VG +++ LF +A+ + P I+F DEID + R +
Sbjct: 72 EAN-----VPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 496 KQEQIHNS---IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
H+ ++ LL MDG DS+ ++++ ATNR D +D AL RPGRFD++ P
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAAS-CVGYCGADLKALCTEAAIRAFREKYPQV 611
R +IL+IHTR +P + ++ E+ A G+ GADL+ L EAA+ A RE ++
Sbjct: 187 DMLGRKKILEIHTR--NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244
Query: 612 YTSDDKFLID 621
D + ID
Sbjct: 245 TMKDFEEAID 254
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 143/250 (57%), Gaps = 12/250 (4%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+F D+GG E I+ LKE+V F L P F P+G+LL GPPGTG TL+ARA+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A+ V F+ G+D + +VG +++ LF +A+ + P I+F DEID + R +
Sbjct: 72 EAN-----VPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 496 KQEQIHNS---IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
H+ ++ LL MDG DS+ ++++ ATNR D +D AL RPGRFD++ P
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAAS-CVGYCGADLKALCTEAAIRAFREKYPQV 611
R +IL+IHTR +P + ++ E+ A G+ GADL+ L EAA+ A RE ++
Sbjct: 187 DMLGRKKILEIHTR--NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244
Query: 612 YTSDDKFLID 621
D + ID
Sbjct: 245 TMKDFEEAID 254
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V ++D+ GL +ALKE V P+ +P F P G+LL GPPGTGK+ +A+A+A
Sbjct: 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVA 105
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A+ +F+ +D++SKW+GE+E+ +K LF A+ N+PSIIF D++D L R
Sbjct: 106 TEANS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 160
Query: 495 SKQEQIHNSIVSTLLALMDGL--DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + I + LL M+G+ DS+G V+++GATN +D A+RR RF+R PLP
Sbjct: 161 EGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE-----K 607
AR + +I+ ++E L A GY G+D+ + +A ++ R+
Sbjct: 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 277
Query: 608 YPQVYTSDDK 617
+ V T DD+
Sbjct: 278 FKDVSTEDDE 287
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 136/251 (54%), Gaps = 11/251 (4%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
VSF D+ G+ E ++E V + L P+ F P+G LL GPPG GKTL+A+A+A
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A +V F GA+ + G +++ LF+EA+ P I++ DEID + RS+
Sbjct: 62 EA-----QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRST 116
Query: 496 KQEQIHNS----IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551
N+ ++ LL MDG+ + V+++ +TNR D +DGAL RPGR DR L
Sbjct: 117 TMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176
Query: 552 PGCEARAEILDIHTRKWKQPPSRELKSE-LAASCVGYCGADLKALCTEAAIRAFREKYPQ 610
P + R EI + H + K S S+ LA G+ GAD+ +C EAA+ A RE +
Sbjct: 177 PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTS 236
Query: 611 VYTSDDKFLID 621
V+T + ++ ++
Sbjct: 237 VHTLNFEYAVE 247
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 134/234 (57%), Gaps = 10/234 (4%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V + D+ GL +ALKE V P+ +P F TP RG+LL GPPGTGK+ +A+A+A
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR-TPWRGILLFGPPGTGKSYLAKAVA 188
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A+ + +F+ +D++SKW+GE+E+ +K LF+ A+ N+PSIIF DEID L RS
Sbjct: 189 TEANNS----TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244
Query: 495 SKQEQIHNSIVSTLLALMD--GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + I + L M G+D+ G ++++GATN +D A+RR RF++ PLP
Sbjct: 245 ENESEAARRIKTEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606
ARA + +H + + EL GY GAD+ + +A ++ R+
Sbjct: 302 EAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V ++D+ GL +ALKE V P+ +P F P G+LL GPPGTGK+ +A+A+A
Sbjct: 23 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVA 81
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A+ +F+ +D++SKW+GE+E+ +K LF A+ N+PSIIF DE+D L R
Sbjct: 82 TEANS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRG 136
Query: 495 SKQEQIHNSIVSTLLALMDGL--DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + I + LL M+G+ DS+G V+++GATN +D A+RR RF+R PLP
Sbjct: 137 EGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLP 193
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE-----K 607
AR + +I+ ++E L A GY G+D+ + +A ++ R+
Sbjct: 194 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 253
Query: 608 YPQVYTSDDK 617
+ V T DD+
Sbjct: 254 FKDVSTEDDE 263
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 13/264 (4%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V++ D+GGL ++E V PL+ D + I PPRGVLL GPPGTGKT++ +A+A
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
+ K +F G++ + K++GE R ++ +F A+ N PSIIF DE+D +A R
Sbjct: 229 ST-----KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD 283
Query: 496 KQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP-L 551
Q ++ I+ LL MDG D V +I ATNR D +D AL RPGR DR+ FP L
Sbjct: 284 AQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343
Query: 552 PGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611
R I K P +L S L GA + A+ EA +RA R+ +
Sbjct: 344 RDRRERRLIFGTIASKMSLAPEADLDS-LIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402
Query: 612 YTSD--DKFLIDVDS-VTVEKYHF 632
SD + + V + TV+K+ F
Sbjct: 403 LQSDLEEAYATQVKTDNTVDKFDF 426
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V ++D+ GL +ALKE V P+ +P F P G+LL GPPGTGK+ +A+A+A
Sbjct: 32 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVA 90
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A+ +F+ +D++SKW+GE+E+ +K LF A+ N+PSIIF D++D L R
Sbjct: 91 TEANS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 145
Query: 495 SKQEQIHNSIVSTLLALMDGL--DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + I + LL M+G+ DS+G V+++GATN +D A+RR RF+R PLP
Sbjct: 146 EGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLP 202
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE-----K 607
AR + +I+ ++E L A GY G+D+ + +A ++ R+
Sbjct: 203 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 262
Query: 608 YPQVYTSDDK 617
+ V T DD+
Sbjct: 263 FKDVSTEDDE 272
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 133/234 (56%), Gaps = 10/234 (4%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V + D+ GL +ALKE V P+ +P F TP RG+LL GPPGTGK+ +A+A+A
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR-TPWRGILLFGPPGTGKSYLAKAVA 66
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A+ + +F+ +D++SKW+GE+E+ +K LF+ A+ N+PSIIF DEID L RS
Sbjct: 67 TEANNS----TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 122
Query: 495 SKQEQIHNSIVSTLLALMD--GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + I + L M G+D+ G +VL GATN +D A+RR RF++ PLP
Sbjct: 123 ENESEAARRIKTEFLVQMQGVGVDNDGILVL-GATNIPWVLDSAIRR--RFEKRIYIPLP 179
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606
ARA + +H + + EL GY GAD+ + +A ++ R+
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V ++D+ GL +ALKE V P+ +P F P G+LL GPPGTGK+ +A+A+A
Sbjct: 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVA 72
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A+ +F+ +D++SKW+GE+E+ +K LF A+ N+PSIIF D++D L R
Sbjct: 73 TEANS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 495 SKQEQIHNSIVSTLLALMDGL--DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + I + LL M+G+ DS+G V+++GATN +D A+RR RF+R PLP
Sbjct: 128 EGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE-----K 607
AR + +I+ ++E L A GY G+D+ + +A ++ R+
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
Query: 608 YPQVYTSDDK 617
+ V T DD+
Sbjct: 245 FKDVSTEDDE 254
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 20/246 (8%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V F D+ G E + + E+V F L YP+ +A+ P+GVLL GPPGTGKTL+A+A+A
Sbjct: 7 NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A V F+ G+ + +VG +++ LFE A++ PSIIF DEID + R+
Sbjct: 66 GEAH-----VPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRA 120
Query: 495 S--------KQEQIHNSIVSTLLALMDGLDSRGQ-VVLIGATNRVDAIDGALRRPGRFDR 545
+ ++EQ N LLA MDG S V+++ ATNR + +D AL RPGRFDR
Sbjct: 121 AGGVVSGNDEREQTLNQ----LLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDR 176
Query: 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605
+ P R EIL +H + K L+ E+A G GADL + EAA+ A R
Sbjct: 177 QVLVDKPDFNGRVEILKVHIKGVKLANDVNLQ-EVAKLTAGLAGADLANIINEAALLAGR 235
Query: 606 EKYPQV 611
+V
Sbjct: 236 NNQKEV 241
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 10/232 (4%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+++DI G+ +KE+V +P+L PD F PP+G+LL GPPGTGKTLI + C
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGK---C 136
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
AS++G +F+ + + SKWVGE E+ ++ LF A+ QP++IF DEID L R
Sbjct: 137 IASQSG--ATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194
Query: 496 KQEQIHNSIVSTLLALMDG--LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPG 553
+ + I + L +DG S +++++GATNR ID A RR R + PLP
Sbjct: 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPE 252
Query: 554 CEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605
AR +I+ K + S E ++ + GAD+ LC EA++ R
Sbjct: 253 ASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 141 bits (356), Expect = 1e-33, Method: Composition-based stats.
Identities = 88/232 (37%), Positives = 127/232 (54%), Gaps = 10/232 (4%)
Query: 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436
+F D+ G E + + E+V + L P F P+GVL+ GPPGTGKTL+A+A+A
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 437 ASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK 496
A KV F+ G+D + +VG +++ +FE+A++ P IIF DEID + R +
Sbjct: 69 A-----KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 497 QEQIHNSIVSTL---LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPG 553
H+ TL L MDG + +++I ATNR D +D AL RPGRFDR+ LP
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183
Query: 554 CEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605
R +IL +H R+ P + + +A G+ GADL L EAA+ A R
Sbjct: 184 VRGREQILKVHMRRVPLAPDID-AAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 128/238 (53%), Gaps = 10/238 (4%)
Query: 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434
+V FDDI G AL+E+V P L P+ F P RG+LL GPPG GKT++A+A+A
Sbjct: 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVA 169
Query: 435 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 494
A +F+ A + SK+VGE E+ ++ LF A+ QPSIIF D++D L R
Sbjct: 170 -----AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224
Query: 495 SKQEQIHNSIVSTLLALMDGLDSRG--QVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + + L DG+ S G +V+++GATNR +D A+ R RF + LP
Sbjct: 225 EGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLP 282
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610
E R +L K P +++ ++LA GY G+DL AL +AA+ RE P+
Sbjct: 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+F D+ G E + LKE+V F L P F P+GVLL GPPG GKT +ARA+A
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A +V F G+D + +VG +++ LFE A+R+ P I+F DEID + R S
Sbjct: 96 EA-----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 150
Query: 496 -------KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548
++EQ N LL MDG + +V++ ATNR D +D AL RPGRFDR+
Sbjct: 151 GVGGGNDEREQTLNQ----LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 549 FPLPGCEARAEILDIHTRKWKQPPSRELK-SELAASCVGYCGAD 591
P + R +IL IH R +P + ++ + LA G+ GAD
Sbjct: 207 IDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+F D+ G E + LKE+V F L P F P+GVLL GPPG GKT +ARA+A
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A +V F G+D + +VG +++ LFE A+R+ P I+F DEID + R S
Sbjct: 87 EA-----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 141
Query: 496 -------KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548
++EQ N LL MDG + +V++ ATNR D +D AL RPGRFDR+
Sbjct: 142 GVGGGNDEREQTLNQ----LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 197
Query: 549 FPLPGCEARAEILDIHTRKWKQPPSRELK-SELAASCVGYCGAD 591
P + R +IL IH R +P + ++ + LA G+ GAD
Sbjct: 198 IDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+F D+ G E + LKE+V F L P F P+GVLL GPPG GKT +ARA+A
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A +V F G+D + +VG +++ LFE A+R+ P I+F DEID + R S
Sbjct: 96 EA-----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 150
Query: 496 -------KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548
++EQ N LL MDG + +V++ ATNR D +D AL RPGRFDR+
Sbjct: 151 GVGGGNDEREQTLNQ----LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 549 FPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591
P + R +IL IH R +L + LA G+ GAD
Sbjct: 207 IDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRTPGFVGAD 248
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 120/234 (51%), Gaps = 11/234 (4%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V + DI G AL+EMV P + P+ F P +G+LL GPPG GKTL+ARA+A
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVAT 76
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
S +F A + SK+VG+ E+ ++ LF A+ QPSIIF DE+D L RSS
Sbjct: 77 ECS-----ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131
Query: 496 KQEQIHNSIVSTLLALMDGLDSR---GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552
+ + + + L DGL ++V++ ATNR +D A R RF + LP
Sbjct: 132 SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLP 189
Query: 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606
+ R +L+ +K P E LA GY G+DL AL +AA+ RE
Sbjct: 190 DEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 97/248 (39%), Positives = 135/248 (54%), Gaps = 20/248 (8%)
Query: 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435
V+F D+ G E + LKE+V F L P F P+GVLL GPPG GKT +ARA+A
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 436 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495
A +V F G+D + +VG +++ LFE A+R+ P I+F DEID + R S
Sbjct: 72 EA-----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 126
Query: 496 -------KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548
++EQ N LL MDG + +V++ ATNR D +D AL RPGRFDR+
Sbjct: 127 GVGGGNDEREQTLNQ----LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 549 FPLPGCEARAEILDIHTRKWKQPPSRELK-SELAASCVGYCGADLKALCTEAAIRAFREK 607
P + R +IL IH R +P + ++ + LA G+ GADL+ L EAA+ A RE
Sbjct: 183 IDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240
Query: 608 YPQVYTSD 615
++ D
Sbjct: 241 RRKITMKD 248
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 43/183 (23%)
Query: 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA 473
R VLL GPPGTGKT +A A+ A + G KV F G++V S + + E +L E
Sbjct: 64 RAVLLAGPPGTGKTALALAI---AQELGSKVPFCPMVGSEVYSTEIKKTE----VLMENF 116
Query: 474 QR------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVL---- 523
+R + ++ E+ L P + + +S ++ + Q+ L
Sbjct: 117 RRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSI 176
Query: 524 ----------IGATNRVDAIDGALRRPGRFD---REFNF------PLPGCEARAEILDIH 564
G ++A GA++R GR D EF+ PLP D+H
Sbjct: 177 FESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG-------DVH 229
Query: 565 TRK 567
+K
Sbjct: 230 KKK 232
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 552 PGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611
P EAR +IL IH+RK L+ ++A G GA++K +CTEA + A RE+ +V
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLR-KIAELMPGASGAEVKGVCTEAGMYALRER--RV 67
Query: 612 YTSDDKFLIDVDSV 625
+ + + F + V V
Sbjct: 68 HVTQEDFEMAVAKV 81
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 550 PLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609
P P EAR +IL IH+RK L+ ++A G GA++K +CTEA A RE+
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLR-KIAELXPGASGAEVKGVCTEAGXYALRERRV 59
Query: 610 QVYTSD 615
V D
Sbjct: 60 HVTQED 65
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE 463
R VLL GPPGTGKT +A A+ A + G KV F G++V S + + E
Sbjct: 78 RAVLLAGPPGTGKTALALAI---AQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-------DVLSKWVGE 461
H TP + G PGTGKT +A +A + G Y+RKG D++ +++G
Sbjct: 56 HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-----YVRKGHLVSVTRDDLVGQYIGH 110
Query: 462 AERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV 521
+ K E +R ++F DE L R + + LL +M+ V
Sbjct: 111 TAPKTK---EVLKRAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVV 165
Query: 522 VLIGATNRVD 531
+L G +R++
Sbjct: 166 ILAGYADRME 175
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAAS-CVGYCGADLKALCTEAAIRAFREKYP 609
LP E RA I IH++ R ++ EL + C GA+L+++CTEA + A R +
Sbjct: 7 LPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-R 63
Query: 610 QVYTSDDKFLIDVDSV 625
+V T D FL VD V
Sbjct: 64 KVATEKD-FLKAVDKV 78
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-------DVLSKWVGE 461
H TP + G PGTGKT +A +A + G Y+RKG D++ +++G
Sbjct: 63 HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-----YVRKGHLVSVTRDDLVGQYIGH 117
Query: 462 AERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV 521
+ K E +R ++F DE L R + + LL +M+ V
Sbjct: 118 TAPKTK---EVLKRAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVV 172
Query: 522 VLIGATNRVD 531
+L G +R++
Sbjct: 173 ILAGYADRME 182
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 417 LLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKGADVL--SKWVGEAERQLKLL 469
LL G G GKT IA LA + + Y +L +K+ G+ E++ K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 470 FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT-- 527
++ +++ SI+F DEI + ++ Q+ + L+ L S G++ +IG+T
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA------NLIKPLLSSGKIRVIGSTTY 324
Query: 528 ---NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILD 562
+ + D AL R RF + + P E +I++
Sbjct: 325 QEFSNIFEKDRALAR--RFQK-IDITEPSIEETVQIIN 359
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 11/43 (25%)
Query: 388 IDALK-EMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLI 429
ID +K E +F+ LL RG++LCGPPG+GKT+I
Sbjct: 1032 IDTIKHEKIFYDLL----------NSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 11/43 (25%)
Query: 388 IDALK-EMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLI 429
ID +K E +F+ LL RG++LCGPPG+GKT+I
Sbjct: 1251 IDTIKHEKIFYDLL----------NSKRGIILCGPPGSGKTMI 1283
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVG-EAERQLK 467
H P+ +L+ GP G GKT IAR LA A+ KV K +V +VG E + ++
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE--ATKFTEV--GYVGKEVDSIIR 101
Query: 468 LLFEEA-----QRNQPSIIFFDEIDGL 489
L + A Q I+F DEID +
Sbjct: 102 DLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-SKWVGE-AERQLKLLFE-- 471
+LL GP G+GKTL+A LA V F M + + +VGE E ++ L +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAGYVGEDVENIIQKLLQKC 108
Query: 472 --EAQRNQPSIIFFDEIDGLA 490
+ Q+ Q I++ D+ID ++
Sbjct: 109 DYDVQKAQRGIVYIDQIDKIS 129
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-SKWVGE-AERQLKLLFE-- 471
+LL GP G+GKTL+A LA V F M + + +VGE E ++ L +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAGYVGEDVENIIQKLLQKC 108
Query: 472 --EAQRNQPSIIFFDEIDGLA 490
+ Q+ Q I++ D+ID ++
Sbjct: 109 DYDVQKAQRGIVYIDQIDKIS 129
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 417 LLCGPPGTGKTLIARALACAASKA-------GQKVSFYMRKGADVLSKWVGEAERQLKLL 469
+L G PG GKT I LA K G+++ +K+ GE E +LK +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 470 FEEAQRNQPSIIFF-DEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528
+E ++Q +I F DE+ + ++ +++ LA RG++ LIGAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-------RGELRLIGATT 307
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 34/128 (26%)
Query: 412 PPRGVLLCGPPGTGKTLIARALACA---ASKAGQKVSF--YMRKGADVLSKWVG------ 460
P L GP G GKT +A+ LA +A ++ YM K A +S+ +G
Sbjct: 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA--VSRLIGAPPGYV 644
Query: 461 --EAERQLKLLFEEAQRNQP-SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--- 514
E QL EA R +P S+I FDEI E+ H + + LL ++D
Sbjct: 645 GYEEGGQLT----EAVRRRPYSVILFDEI-----------EKAHPDVFNILLQILDDGRL 689
Query: 515 LDSRGQVV 522
DS G+ V
Sbjct: 690 TDSHGRTV 697
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 417 LLCGPPGTGKTLIARALACAASKA-------GQKVSFYMRKGADVLSKWVGEAERQLKLL 469
+L G PG GKT I LA K G+++ +K+ GE E +LK +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 470 FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528
+E ++Q +I F ID L V + + + V L L +RG++ LIGAT
Sbjct: 118 IQEVVQSQGEVILF--IDELHTVVGAGKAE---GAVDAGNMLKPAL-ARGELRLIGATT 170
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 21/87 (24%)
Query: 415 GVLLCGPPGTGKTLIARALA------CAASKAGQKVSFYMRKGADVLSKWVGE-AERQLK 467
+LL GP G+GKTL+A+ LA A S A + +VGE E L
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE----------AGYVGEDVENILT 123
Query: 468 LLFE----EAQRNQPSIIFFDEIDGLA 490
L + Q+ Q I+F DEID ++
Sbjct: 124 RLLQASDWNVQKAQKGIVFIDEIDKIS 150
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444
H P+ +L+ GP G GKT IAR LA A+ KV
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444
H P+ +L+ GP G GKT IAR LA A+ KV
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 80
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444
H P+ +L+ GP G GKT IAR LA A+ KV
Sbjct: 52 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 87
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444
H P+ +L+ GP G GKT IAR LA A+ KV
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 417 LLCGPPGTGKTLIARALACAASKAGQKVSFYMRK--GADVLS-----KWVGEAERQLKLL 469
+L G PG GKT I LA + S RK D+ S K+ G+ E +LK +
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 470 FEEAQRNQPSII-FFDEIDGLAPVRSSKQEQIH-NSIVSTLLALMDGLDSRGQVVLIGAT 527
+E Q + ++ F DEI + + + + +I+ +LA RG++ IGAT
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-------RGELRCIGAT 159
Query: 528 N 528
Sbjct: 160 T 160
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 555 EARAEILDIHTRKWKQPPSRELKSELAAS-CVGYCGADLKALCTEAAIRAFREKYPQVYT 613
E RA I IH++ R ++ EL + C GA+L+++CTEA A R + +V T
Sbjct: 4 EGRANIFRIHSKS--XSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRAR-RKVAT 60
Query: 614 SDDKFLIDVDSV 625
D FL VD V
Sbjct: 61 EKD-FLKAVDKV 71
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-------DVLSKWVGE 461
H TP G PGTGKT +A A + G Y+RKG D++ +++G
Sbjct: 63 HETPTLHXSFTGNPGTGKTTVALKXAGLLHRLG-----YVRKGHLVSVTRDDLVGQYIGH 117
Query: 462 AERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV 521
+ K E +R ++F DE L R + + LL + + V
Sbjct: 118 TAPKTK---EVLKRAXGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVXENNRDDLVV 172
Query: 522 VLIGATNRVD 531
+L G +R +
Sbjct: 173 ILAGYADRXE 182
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 34/128 (26%)
Query: 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQ-----KVSFYMRKGADVLSKWVG------ 460
P L GP G GKT +A+ LA + ++ YM K A +S+ +G
Sbjct: 43 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA--VSRLIGAPPGYV 100
Query: 461 --EAERQLKLLFEEAQRNQP-SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--- 514
E QL EA R +P S+I FD I E+ H + + LL ++D
Sbjct: 101 GYEEGGQLT----EAVRRRPYSVILFDAI-----------EKAHPDVFNILLQILDDGRL 145
Query: 515 LDSRGQVV 522
DS G+ V
Sbjct: 146 TDSHGRTV 153
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 417 LLCGPPGTGKTLIARALACAASKAGQKVSFYMRK----GADVLSKWVGEAERQLKLLFEE 472
+L G PG GKT IA LA +V +R D+ +K+ GE E +LK + +E
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI--INNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDE 262
Query: 473 AQRNQPSIIFFD 484
++ I+F D
Sbjct: 263 IRQAGNIILFID 274
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 40/205 (19%)
Query: 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFE 471
P + GP G GKT +ARAL A S G + S ++ + K + L E
Sbjct: 520 PIGSFIFLGPTGVGKTELARAL--AESIFGDEESMIRIDMSEYMEKHSTSGGQ----LTE 573
Query: 472 EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM-DG--LDSRGQVV------ 522
+ +R S++ D I E+ H + + LL ++ DG DS+G+ V
Sbjct: 574 KVRRKPYSVVLLDAI-----------EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622
Query: 523 LIGATN----RVDAIDGALRRP------GRFDREFNFPLPGCEARAEILDIHTRKW-KQP 571
LI +N D + G L+R R D F + EI+ + + + K+
Sbjct: 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL 682
Query: 572 PSRELKSEL---AASCVGYCGADLK 593
++L EL A + V G DL+
Sbjct: 683 KEQDLSIELTDAAKAKVAEEGVDLE 707
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE----RQL 466
TP VLL GPP +GKT + A+K ++ +F K K +G +E + +
Sbjct: 62 TPLVSVLLEGPPHSGKTAL-------AAKIAEESNFPFIKICSP-DKMIGFSETAKCQAM 113
Query: 467 KLLFEEAQRNQPSIIFFDEIDGL 489
K +F++A ++Q S + D+I+ L
Sbjct: 114 KKIFDDAYKSQLSCVVVDDIERL 136
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE----RQL 466
TP VLL GPP +GKT + A+K ++ +F K K +G +E + +
Sbjct: 61 TPLVSVLLEGPPHSGKTAL-------AAKIAEESNFPFIKICSP-DKMIGFSETAKCQAM 112
Query: 467 KLLFEEAQRNQPSIIFFDEIDGL 489
K +F++A ++Q S + D+I+ L
Sbjct: 113 KKIFDDAYKSQLSCVVVDDIERL 135
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444
H P+ +L GP G GKT IAR LA A+ KV
Sbjct: 46 HEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 417 LLCGPPGTGKTLIARALACAASKAGQKVSFYMRK----GADVLSKWVGEAERQLKLLFEE 472
+L G PG GKT IA LA +V +R D+ +K+ GE E +LK + +E
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI--INNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDE 262
Query: 473 AQRNQPSIIFFD 484
++ I+F D
Sbjct: 263 IRQAGNIILFID 274
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 16/75 (21%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR 475
++L GPPGTGKT +A +A A+ +++S V ++++ E A++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA------------VTSGVKEIREAIERARQ 100
Query: 476 NQP----SIIFFDEI 486
N+ +I+F DE+
Sbjct: 101 NRNAGRRTILFVDEV 115
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE 463
R VL+ G PGTGKT IA +A A G F G+++ S + + E
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQA---LGPDTPFTAIAGSEIFSLEMSKTE 117
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 407 SYHITPPRGVLLCGPPGTGKTLIARAL 433
++HI P + V L GP G+GKT I L
Sbjct: 375 TFHIKPGQKVALVGPTGSGKTTIVNLL 401
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFE---E 472
+L GPPG GKT A ALA + +F +D ER + ++ E E
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD---------ERGINVIREKVKE 99
Query: 473 AQRNQP------SIIFFDEIDGL 489
R +P IIF DE D L
Sbjct: 100 FARTKPIGGASFKIIFLDEADAL 122
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLL---FEE 472
+L GPPGTGKT A ALA + +F +D ER + ++ +E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---------ERGIDVVRHKIKE 91
Query: 473 AQRNQP------SIIFFDEIDGL 489
R P IIF DE D L
Sbjct: 92 FARTAPIGGAPFKIIFLDEADAL 114
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLL---FEE 472
+L GPPGTGKT A ALA + +F +D ER + ++ +E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---------ERGIDVVRHKIKE 91
Query: 473 AQRNQP------SIIFFDEIDGL 489
R P IIF DE D L
Sbjct: 92 FARTAPIGGAPFKIIFLDEADAL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR 475
VLL GPPG GKT +A +A ++ V S V + + + +R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----------LQTNIHVTSGPVLVKQGDMAAILTSLER 102
Query: 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV--------LIGAT 527
++F DEI L + +E ++++I + +M G + + L+GAT
Sbjct: 103 GD--VLFIDEIHRL---NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157
Query: 528 NRVDAIDGALRRPGRFDREFNF 549
R + LR E +F
Sbjct: 158 TRSGLLSSPLRSAFGIILELDF 179
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456
R VL+ G PGTGKT IA A A G F G+++ S
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQA---LGPDTPFTAIAGSEIFS 125
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 16/215 (7%)
Query: 406 ASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQ 465
S+ + V L GP G GKT LA ++ F DVL + R+
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF-----DDVLVNDIPPKYRE 76
Query: 466 LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM-DGLDSRGQVVLI 524
+ ++F+ P + F+ I R ++++ +V L+ D L R L
Sbjct: 77 VGMVFQNYAL-YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLS 135
Query: 525 GATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC 584
G + A+ AL + + F+ PL LD + R + + L+ EL +
Sbjct: 136 GGQQQRVALARALVKQPKV-LLFDEPLSN-------LDANLRMIMRAEIKHLQQELGITS 187
Query: 585 VGYCGADLKALCTEAAIRAFRE-KYPQVYTSDDKF 618
V +A+ + I F + K Q T D+ +
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 414 RGVLLCGPPGTGKTL 428
R ++LCGPPG+GKT+
Sbjct: 1305 RPLILCGPPGSGKTM 1319
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 414 RGVLLCGPPGTGKTL 428
R ++LCGPPG+GKT+
Sbjct: 1305 RPLILCGPPGSGKTM 1319
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 414 RGVLLCGPPGTGKTLIARALA 434
R VLL G PGTGK+++ +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR 475
VLL GPPG GKT +A +A ++ V S V + + + +R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----------LQTNIHVTSGPVLVKQGDMAAILTSLER 102
Query: 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV--------LIGAT 527
++F DEI L + +E ++++I + +M G + + L+GAT
Sbjct: 103 GD--VLFIDEIHRL---NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157
Query: 528 NRVDAIDGALRRPGRFDREFNF 549
R + LR E +F
Sbjct: 158 TRSGLLSSPLRSRFGIILELDF 179
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR 475
VLL GPPG GKT +A +A ++ V S V + + + +R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----------LQTNIHVTSGPVLVKQGDMAAILTSLER 102
Query: 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV--------LIGAT 527
++F DEI L + +E ++++I + +M G + + L+GAT
Sbjct: 103 GD--VLFIDEIHRL---NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157
Query: 528 NRVDAIDGALRRPGRFDREFNF 549
R + LR E +F
Sbjct: 158 TRSGLLSSPLRSRFGIILELDF 179
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 30/126 (23%)
Query: 412 PPRGVLLCGPPGTGKTLIARALACA---ASKAGQKVSFYMRKGADVLSKWVG-------- 460
P L GP G GKT +A+ LA +A ++ +S+ +G
Sbjct: 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKHAVSRLIGAPPGYVGY 105
Query: 461 EAERQLKLLFEEAQRNQP-SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG---LD 516
E QL EA R +P S+I FD I E+ H + + LL +D D
Sbjct: 106 EEGGQLT----EAVRRRPYSVILFDAI-----------EKAHPDVFNILLQXLDDGRLTD 150
Query: 517 SRGQVV 522
S G+ V
Sbjct: 151 SHGRTV 156
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 375 SVSFDDIGGLSEYIDALKEMVF---FPLLYPDFFASYHITPPRGVLLCGPPG----TGKT 427
SV D+ L E DALKE V P Y D YH+ P ++ GP G TG+
Sbjct: 207 SVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRK 266
Query: 428 LIA 430
+I
Sbjct: 267 IIV 269
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 403 DFFASYHITPP-RGVLLC--GPPGTGKTLIARALACAASKAGQKVSF-YMRKGADVLS-- 456
++ A +T +G +LC GPPG GKT +A+++A + + ++S +R +++
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154
Query: 457 -KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLA 490
+VG ++ ++A + P + DEID ++
Sbjct: 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMS 188
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 416 VLLCGPPGTGKTLIARALAC 435
VLL GPPG GKT +A +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 416 VLLCGPPGTGKTLIARALAC 435
VLL GPPG GKT +A +A
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 417 LLCGPPGTGKTLIARALA-------CAASKAGQKVSFYMRKGADVL-SKWVGEAERQLK- 467
+L G PG GKT I LA G++V + GA V +K+ GE E +LK
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV-LALDMGALVAGAKYRGEFEERLKG 105
Query: 468 LLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527
+L + A++ I+F DE+ + + +++ LA RG++ +GAT
Sbjct: 106 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-------RGELHCVGAT 158
Query: 528 NRVDAIDGALRRPGRFDREF 547
+D + + +R F
Sbjct: 159 T-LDEYRQYIEKDAALERRF 177
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 92 LEDYTDSSGSEDEDLMRPSYRPLRNRMRNNMSQDELSPSKRKKVVEAKPTPRREGLRPRR 151
+++ TDSS S+ P YR + + S DEL + + VE + R E L RR
Sbjct: 1 MDNGTDSSTSK----FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRR 56
Query: 152 SMVATRKQLNLDSGDEQGSSEEK 174
+ + + D DE S ++
Sbjct: 57 NFIPPTDGADSDEEDESSVSADQ 79
>pdb|1E9R|A Chain A, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|B Chain B, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|D Chain D, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|E Chain E, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|F Chain F, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|G Chain G, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9S|A Chain A, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|B Chain B, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|D Chain D, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|E Chain E, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|F Chain F, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|G Chain G, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|H Chain H, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|I Chain I, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|J Chain J, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|K Chain K, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|L Chain L, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|M Chain M, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1GKI|A Chain A, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|B Chain B, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|D Chain D, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|E Chain E, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|F Chain F, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|G Chain G, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GL7|A Chain A, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|B Chain B, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|D Chain D, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|E Chain E, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|F Chain F, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|G Chain G, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolisable Atp-Analogue Adpnp
Length = 437
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEE 472
PR +L+ G GTGK+++ R LA G ++ G D+LSK+ R ++
Sbjct: 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG-DMLSKF----GRDKDIILNP 107
Query: 473 AQRNQPSIIFFDEI 486
+ FF+EI
Sbjct: 108 YDQRTKGWSFFNEI 121
>pdb|1GL6|A Chain A, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|B Chain B, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|D Chain D, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|E Chain E, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|F Chain F, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|G Chain G, Plasmid Coupling Protein Trwb In Complex With The Non-
Hydrolysable Gtp Analogue Gdpnp
Length = 436
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEE 472
PR +L+ G GTGK+++ R LA G ++ G D+LSK+ R ++
Sbjct: 52 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG-DMLSKF----GRDKDIILNP 106
Query: 473 AQRNQPSIIFFDEI 486
+ FF+EI
Sbjct: 107 YDQRTKGWSFFNEI 120
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR 475
+L GP G GKT +A ++ S A++ + E+ L
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXS-------------ANIKTTAAPXIEKSGDLAAILTNL 104
Query: 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV--------LIGAT 527
++ I+F DEI L+P + +E ++ + L ++ G Q + LIGAT
Sbjct: 105 SEGDILFIDEIHRLSP---AIEEVLYPAXEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161
Query: 528 NRVDAIDGALRRPGRFDREF 547
R + LR RF +F
Sbjct: 162 TRAGXLSNPLR--DRFGXQF 179
>pdb|3EOK|A Chain A, Crystal Structure Determination Of Duck (Anas
Platyrhynchos) Hemoglobin At 2.1 Angstrom Resolution
Length = 141
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 33/108 (30%)
Query: 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582
L+ A N VD I GAL +++ D+H +K + P +
Sbjct: 66 LVEAVNHVDDIAGAL--------------------SKLSDLHAQKLRVDP-------VNF 98
Query: 583 SCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKY 630
+G+C + A+ AA+ P+V+ S DKF+ V +V KY
Sbjct: 99 KFLGHCFLVVVAIHHPAALT------PEVHASLDKFMCAVGAVLTAKY 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,433,744
Number of Sequences: 62578
Number of extensions: 828970
Number of successful extensions: 2551
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2364
Number of HSP's gapped (non-prelim): 120
length of query: 791
length of database: 14,973,337
effective HSP length: 107
effective length of query: 684
effective length of database: 8,277,491
effective search space: 5661803844
effective search space used: 5661803844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)