Query 003859
Match_columns 791
No_of_seqs 694 out of 3930
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 13:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.8E-68 3.9E-73 582.0 31.0 392 374-786 185-634 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-57 7.1E-62 502.2 27.7 371 374-789 180-559 (693)
3 KOG0732 AAA+-type ATPase conta 100.0 1.4E-53 3.1E-58 498.1 33.6 506 273-778 159-677 (1080)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-47 2.3E-52 461.1 33.9 382 374-773 173-565 (733)
5 COG1222 RPT1 ATP-dependent 26S 100.0 9.8E-48 2.1E-52 400.4 24.1 249 371-641 143-394 (406)
6 KOG0736 Peroxisome assembly fa 100.0 2.8E-46 6E-51 417.8 28.4 370 378-775 400-785 (953)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-46 3.2E-51 410.7 24.8 287 348-644 484-774 (802)
8 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-45 2.3E-50 410.6 22.9 253 371-643 426-678 (693)
9 KOG0735 AAA+-type ATPase [Post 100.0 8.6E-44 1.9E-48 394.1 29.8 357 379-774 408-780 (952)
10 KOG0736 Peroxisome assembly fa 100.0 1.7E-42 3.7E-47 387.5 24.5 285 347-644 646-937 (953)
11 KOG0738 AAA+-type ATPase [Post 100.0 5.3E-41 1.1E-45 351.4 20.1 264 371-643 204-473 (491)
12 KOG0734 AAA+-type ATPase conta 100.0 1.7E-40 3.6E-45 358.0 20.2 229 374-609 299-527 (752)
13 KOG0741 AAA+-type ATPase [Post 100.0 6E-41 1.3E-45 361.1 13.1 370 371-769 211-613 (744)
14 KOG0728 26S proteasome regulat 100.0 1.8E-37 4E-42 307.4 21.0 245 374-640 142-389 (404)
15 KOG0739 AAA+-type ATPase [Post 100.0 2.6E-38 5.6E-43 320.4 15.1 228 372-607 126-354 (439)
16 KOG0727 26S proteasome regulat 100.0 4.5E-37 9.8E-42 304.9 21.0 247 372-640 148-397 (408)
17 KOG0731 AAA+-type ATPase conta 100.0 3.7E-37 8.1E-42 352.9 22.4 245 373-639 305-553 (774)
18 KOG0726 26S proteasome regulat 100.0 7.1E-38 1.5E-42 316.3 14.4 246 372-639 178-426 (440)
19 KOG0652 26S proteasome regulat 100.0 5E-37 1.1E-41 305.8 17.9 247 372-640 164-413 (424)
20 KOG0735 AAA+-type ATPase [Post 100.0 1.4E-36 3E-41 337.0 22.5 230 374-609 662-891 (952)
21 KOG0729 26S proteasome regulat 100.0 1.6E-36 3.5E-41 303.0 17.9 249 370-640 168-419 (435)
22 COG1223 Predicted ATPase (AAA+ 100.0 5.3E-36 1.1E-40 298.9 18.9 241 373-641 115-357 (368)
23 PTZ00454 26S protease regulato 100.0 1.6E-35 3.5E-40 328.6 24.4 248 372-641 138-388 (398)
24 COG0464 SpoVK ATPases of the A 100.0 8.6E-35 1.9E-39 335.8 29.5 347 397-775 2-356 (494)
25 PRK03992 proteasome-activating 100.0 2.4E-34 5.2E-39 320.7 23.6 254 371-646 123-379 (389)
26 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-34 3.3E-39 303.9 20.2 228 374-609 87-317 (386)
27 COG0464 SpoVK ATPases of the A 100.0 3.4E-34 7.3E-39 330.9 25.0 252 372-643 235-487 (494)
28 TIGR01243 CDC48 AAA family ATP 100.0 3.4E-34 7.3E-39 344.5 25.8 265 373-643 447-714 (733)
29 COG0465 HflB ATP-dependent Zn 100.0 2.8E-34 6E-39 324.8 18.0 244 374-640 145-391 (596)
30 PTZ00361 26 proteosome regulat 100.0 8.7E-34 1.9E-38 316.4 21.7 247 372-640 176-425 (438)
31 CHL00195 ycf46 Ycf46; Provisio 100.0 2.8E-33 6.1E-38 316.8 24.9 244 374-644 223-468 (489)
32 TIGR03689 pup_AAA proteasome A 100.0 7.1E-32 1.5E-36 304.7 24.1 227 372-604 175-411 (512)
33 TIGR01241 FtsH_fam ATP-depende 100.0 6E-32 1.3E-36 311.4 22.7 246 373-641 49-297 (495)
34 TIGR01242 26Sp45 26S proteasom 100.0 1.8E-31 3.9E-36 296.3 23.6 246 372-639 115-363 (364)
35 CHL00176 ftsH cell division pr 100.0 6.7E-31 1.5E-35 306.2 22.9 244 373-639 177-423 (638)
36 KOG0740 AAA+-type ATPase [Post 100.0 5.4E-31 1.2E-35 287.1 17.6 260 374-644 148-409 (428)
37 KOG0651 26S proteasome regulat 100.0 2E-31 4.3E-36 272.8 11.4 244 374-639 127-373 (388)
38 COG0542 clpA ATP-binding subun 100.0 7E-30 1.5E-34 295.6 23.1 363 375-769 166-607 (786)
39 TIGR02639 ClpA ATP-dependent C 100.0 2.1E-29 4.5E-34 302.2 26.3 344 375-768 178-567 (731)
40 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.8E-29 6.1E-34 305.1 20.0 213 402-641 1619-1879(2281)
41 TIGR03345 VI_ClpV1 type VI sec 100.0 1.7E-28 3.8E-33 295.9 25.2 205 375-602 183-409 (852)
42 PRK10733 hflB ATP-dependent me 100.0 1E-28 2.2E-33 291.2 22.0 245 374-641 147-394 (644)
43 PRK11034 clpA ATP-dependent Cl 100.0 1.3E-28 2.8E-33 291.6 22.3 347 375-771 182-574 (758)
44 CHL00095 clpC Clp protease ATP 100.0 9.4E-28 2E-32 291.0 24.2 365 375-771 175-628 (821)
45 PLN00020 ribulose bisphosphate 100.0 6.8E-27 1.5E-31 248.8 24.4 221 374-605 110-353 (413)
46 TIGR03346 chaperone_ClpB ATP-d 99.9 3.2E-25 6.9E-30 269.7 25.5 206 375-603 169-396 (852)
47 PRK10865 protein disaggregatio 99.9 4.4E-25 9.4E-30 267.4 22.1 189 375-586 174-379 (857)
48 CHL00181 cbbX CbbX; Provisiona 99.9 6.8E-21 1.5E-25 203.8 21.4 221 379-609 23-260 (287)
49 TIGR02881 spore_V_K stage V sp 99.9 4.6E-21 1E-25 203.4 18.2 221 377-608 4-243 (261)
50 TIGR02880 cbbX_cfxQ probable R 99.9 1.5E-20 3.2E-25 201.3 21.5 220 380-609 23-259 (284)
51 CHL00195 ycf46 Ycf46; Provisio 99.9 1.1E-20 2.3E-25 214.7 19.9 243 478-771 82-335 (489)
52 COG1222 RPT1 ATP-dependent 26S 99.8 9.2E-21 2E-25 198.9 9.8 114 650-775 144-265 (406)
53 KOG0744 AAA+-type ATPase [Post 99.8 8.2E-20 1.8E-24 188.5 12.8 242 377-638 140-413 (423)
54 KOG0743 AAA+-type ATPase [Post 99.8 1.7E-19 3.8E-24 195.6 15.7 214 367-596 189-413 (457)
55 PF05496 RuvB_N: Holliday junc 99.8 9.5E-19 2.1E-23 176.0 15.6 191 374-599 19-225 (233)
56 PF00004 AAA: ATPase family as 99.8 4.6E-19 1E-23 167.2 11.5 130 416-551 1-132 (132)
57 KOG0742 AAA+-type ATPase [Post 99.8 2.6E-18 5.6E-23 181.7 17.7 211 375-600 351-589 (630)
58 KOG1051 Chaperone HSP104 and r 99.8 3.2E-17 7E-22 193.1 21.8 368 378-770 185-675 (898)
59 COG2255 RuvB Holliday junction 99.7 5.1E-17 1.1E-21 166.1 16.8 199 374-607 21-235 (332)
60 PRK07003 DNA polymerase III su 99.7 8.3E-16 1.8E-20 177.8 26.3 192 374-600 11-225 (830)
61 TIGR00635 ruvB Holliday juncti 99.7 1.7E-16 3.7E-21 172.3 19.8 211 377-638 2-228 (305)
62 PRK00080 ruvB Holliday junctio 99.7 2.3E-16 5E-21 173.0 20.3 215 374-639 20-250 (328)
63 COG2256 MGS1 ATPase related to 99.7 1.3E-16 2.8E-21 170.6 15.2 171 374-587 19-205 (436)
64 PRK14956 DNA polymerase III su 99.7 8E-16 1.7E-20 172.3 19.3 192 374-600 13-227 (484)
65 PRK12323 DNA polymerase III su 99.7 6.9E-16 1.5E-20 176.5 18.7 193 374-601 11-231 (700)
66 PRK00149 dnaA chromosomal repl 99.7 4.3E-15 9.4E-20 169.8 23.0 212 371-606 114-333 (450)
67 TIGR00763 lon ATP-dependent pr 99.7 2.2E-15 4.7E-20 182.4 20.4 231 380-637 321-584 (775)
68 TIGR00362 DnaA chromosomal rep 99.7 6.8E-15 1.5E-19 166.1 23.1 209 372-605 103-320 (405)
69 PRK14958 DNA polymerase III su 99.7 1.4E-14 3.1E-19 166.3 25.7 212 374-640 11-245 (509)
70 PRK14962 DNA polymerase III su 99.7 3E-15 6.4E-20 170.2 19.9 190 374-598 9-221 (472)
71 KOG0727 26S proteasome regulat 99.7 1.9E-16 4.2E-21 158.4 8.2 112 650-773 148-267 (408)
72 PRK06893 DNA replication initi 99.6 8.3E-15 1.8E-19 152.4 20.6 199 369-600 6-208 (229)
73 PRK08084 DNA replication initi 99.6 1.1E-14 2.4E-19 152.0 21.6 198 369-603 12-217 (235)
74 PRK08691 DNA polymerase III su 99.6 2.4E-14 5.2E-19 165.9 26.3 193 374-601 11-226 (709)
75 PRK14960 DNA polymerase III su 99.6 4.4E-15 9.4E-20 170.4 19.8 193 374-601 10-225 (702)
76 KOG0652 26S proteasome regulat 99.6 3.8E-16 8.2E-21 157.0 9.6 111 651-773 165-283 (424)
77 PRK14088 dnaA chromosomal repl 99.6 1.3E-14 2.8E-19 164.6 23.0 211 372-606 98-316 (440)
78 PRK14949 DNA polymerase III su 99.6 5.4E-15 1.2E-19 174.2 20.0 192 374-600 11-225 (944)
79 PRK14961 DNA polymerase III su 99.6 7.2E-15 1.6E-19 163.2 20.0 192 374-600 11-225 (363)
80 TIGR02928 orc1/cdc6 family rep 99.6 2.1E-14 4.5E-19 160.0 23.4 230 374-639 10-274 (365)
81 PRK06645 DNA polymerase III su 99.6 1E-14 2.2E-19 166.4 21.3 195 374-603 16-237 (507)
82 PRK07994 DNA polymerase III su 99.6 8.2E-15 1.8E-19 170.5 20.6 192 374-600 11-225 (647)
83 KOG0726 26S proteasome regulat 99.6 7.4E-16 1.6E-20 157.1 9.4 113 652-776 180-300 (440)
84 PRK08727 hypothetical protein; 99.6 4.7E-14 1E-18 147.1 23.0 199 369-604 9-213 (233)
85 PRK14964 DNA polymerase III su 99.6 1.1E-14 2.4E-19 165.0 19.5 193 374-601 8-223 (491)
86 KOG0739 AAA+-type ATPase [Post 99.6 4.5E-16 9.7E-21 159.2 7.1 116 646-774 122-245 (439)
87 PRK14086 dnaA chromosomal repl 99.6 3.9E-14 8.5E-19 162.7 23.7 211 372-606 281-499 (617)
88 TIGR02902 spore_lonB ATP-depen 99.6 6E-15 1.3E-19 170.9 17.2 216 374-637 60-330 (531)
89 PLN03025 replication factor C 99.6 1.3E-14 2.8E-19 158.6 18.8 193 372-597 6-202 (319)
90 PRK12402 replication factor C 99.6 2.4E-14 5.3E-19 157.5 21.1 192 373-594 9-225 (337)
91 PRK00411 cdc6 cell division co 99.6 3.8E-14 8.3E-19 159.5 22.7 232 374-640 25-283 (394)
92 KOG0728 26S proteasome regulat 99.6 1.2E-15 2.6E-20 152.6 9.2 113 652-776 142-262 (404)
93 KOG0989 Replication factor C, 99.6 7.1E-15 1.5E-19 152.1 14.9 190 369-587 26-223 (346)
94 KOG0738 AAA+-type ATPase [Post 99.6 5.4E-16 1.2E-20 164.0 6.5 125 647-786 202-334 (491)
95 PTZ00112 origin recognition co 99.6 3.9E-14 8.4E-19 164.2 21.3 226 375-640 751-1007(1164)
96 TIGR03420 DnaA_homol_Hda DnaA 99.6 7.1E-14 1.5E-18 144.9 21.2 199 371-606 7-212 (226)
97 PRK07764 DNA polymerase III su 99.6 2.6E-14 5.6E-19 171.5 19.9 196 374-600 10-226 (824)
98 PRK13342 recombination factor 99.6 4E-14 8.6E-19 160.1 20.3 183 374-600 7-201 (413)
99 PRK14951 DNA polymerase III su 99.6 2.9E-14 6.2E-19 165.7 19.2 193 374-601 11-231 (618)
100 PRK05563 DNA polymerase III su 99.6 4.2E-14 9.1E-19 164.6 20.2 193 374-601 11-226 (559)
101 KOG2028 ATPase related to the 99.6 1.8E-14 3.8E-19 151.2 15.0 213 374-639 133-368 (554)
102 PRK14952 DNA polymerase III su 99.6 5.7E-14 1.2E-18 162.7 20.8 193 374-601 8-225 (584)
103 PRK08903 DnaA regulatory inact 99.6 9.4E-14 2E-18 144.4 20.5 210 369-637 8-224 (227)
104 PF00308 Bac_DnaA: Bacterial d 99.6 7.3E-14 1.6E-18 144.1 19.1 206 373-603 2-216 (219)
105 KOG0729 26S proteasome regulat 99.6 3.9E-15 8.5E-20 150.1 9.2 124 650-785 170-302 (435)
106 PRK04195 replication factor C 99.6 3.9E-14 8.4E-19 163.2 18.5 192 371-600 6-204 (482)
107 PRK14963 DNA polymerase III su 99.6 6.6E-14 1.4E-18 160.5 20.2 191 374-599 9-221 (504)
108 PRK14957 DNA polymerase III su 99.6 1E-13 2.3E-18 159.2 20.7 193 374-601 11-226 (546)
109 TIGR02397 dnaX_nterm DNA polym 99.6 9.8E-14 2.1E-18 153.9 19.9 193 374-601 9-224 (355)
110 PRK14969 DNA polymerase III su 99.6 6.1E-14 1.3E-18 162.1 18.6 193 374-601 11-226 (527)
111 PRK07940 DNA polymerase III su 99.6 7.7E-14 1.7E-18 155.3 18.1 189 377-596 3-215 (394)
112 PRK14965 DNA polymerase III su 99.6 1.1E-13 2.4E-18 161.8 20.0 193 374-601 11-226 (576)
113 PRK07133 DNA polymerase III su 99.6 1.4E-13 3.1E-18 161.1 20.4 192 374-600 13-224 (725)
114 COG0466 Lon ATP-dependent Lon 99.5 5E-14 1.1E-18 160.0 15.4 208 380-605 324-563 (782)
115 PRK06647 DNA polymerase III su 99.5 1.6E-13 3.5E-18 159.2 20.0 192 374-600 11-225 (563)
116 PF05673 DUF815: Protein of un 99.5 3E-13 6.6E-18 138.3 19.3 202 367-598 15-244 (249)
117 PRK08451 DNA polymerase III su 99.5 2.3E-13 4.9E-18 155.6 20.2 195 374-603 9-226 (535)
118 PRK05896 DNA polymerase III su 99.5 2.2E-13 4.9E-18 156.5 20.2 191 374-599 11-224 (605)
119 PRK14959 DNA polymerase III su 99.5 1.7E-13 3.7E-18 158.2 19.0 193 374-598 11-223 (624)
120 PRK14953 DNA polymerase III su 99.5 2.2E-13 4.8E-18 155.7 19.8 192 374-600 11-225 (486)
121 PRK00440 rfc replication facto 99.5 2.5E-13 5.4E-18 148.3 19.3 216 372-640 10-227 (319)
122 PRK05642 DNA replication initi 99.5 1.2E-12 2.7E-17 136.5 23.3 204 369-605 9-218 (234)
123 PRK12422 chromosomal replicati 99.5 4.9E-13 1.1E-17 151.4 21.5 207 372-600 104-318 (445)
124 PRK13341 recombination factor 99.5 3.5E-13 7.5E-18 160.1 21.0 184 374-601 23-223 (725)
125 PRK09111 DNA polymerase III su 99.5 2.6E-13 5.7E-18 158.1 19.6 193 374-601 19-239 (598)
126 PRK14087 dnaA chromosomal repl 99.5 9.3E-13 2E-17 149.6 23.6 207 375-606 111-330 (450)
127 KOG0734 AAA+-type ATPase conta 99.5 1.4E-14 3E-19 158.3 8.1 108 652-772 299-414 (752)
128 KOG2004 Mitochondrial ATP-depe 99.5 1.1E-13 2.3E-18 156.2 14.4 211 379-607 411-653 (906)
129 PRK14970 DNA polymerase III su 99.5 4.2E-13 9.2E-18 149.6 18.8 192 374-600 12-214 (367)
130 PRK06305 DNA polymerase III su 99.5 6.1E-13 1.3E-17 151.2 19.7 191 374-599 12-226 (451)
131 PHA02544 44 clamp loader, smal 99.5 5E-13 1.1E-17 146.0 18.3 181 371-586 13-201 (316)
132 TIGR00390 hslU ATP-dependent p 99.5 3.6E-13 7.9E-18 147.6 15.9 128 477-606 247-407 (441)
133 KOG0731 AAA+-type ATPase conta 99.5 5.4E-14 1.2E-18 163.0 9.1 107 652-771 306-420 (774)
134 PRK05201 hslU ATP-dependent pr 99.5 4.2E-13 9.1E-18 147.2 14.8 219 381-606 17-409 (443)
135 PRK14955 DNA polymerase III su 99.5 1.1E-12 2.4E-17 147.4 18.6 193 374-601 11-234 (397)
136 COG2812 DnaX DNA polymerase II 99.5 3.3E-13 7.1E-18 152.5 14.2 201 374-603 11-228 (515)
137 COG1474 CDC6 Cdc6-related prot 99.5 3E-12 6.5E-17 141.2 21.4 214 374-609 12-251 (366)
138 PRK14950 DNA polymerase III su 99.5 1.8E-12 3.9E-17 152.3 19.9 191 374-599 11-225 (585)
139 PRK10787 DNA-binding ATP-depen 99.5 6.9E-13 1.5E-17 159.4 16.6 226 380-638 323-581 (784)
140 COG0593 DnaA ATPase involved i 99.5 4.6E-12 9.9E-17 139.4 21.6 212 371-607 79-298 (408)
141 PTZ00454 26S protease regulato 99.5 1.6E-13 3.4E-18 153.1 10.1 111 650-772 138-256 (398)
142 KOG0737 AAA+-type ATPase [Post 99.5 3.7E-14 8.1E-19 150.4 4.8 120 652-785 87-214 (386)
143 PRK05342 clpX ATP-dependent pr 99.4 1.7E-12 3.6E-17 145.3 17.7 222 377-607 68-382 (412)
144 PRK14954 DNA polymerase III su 99.4 3.3E-12 7.1E-17 149.2 20.4 192 374-600 11-233 (620)
145 PRK06620 hypothetical protein; 99.4 3.6E-12 7.7E-17 131.0 18.2 181 369-600 6-194 (214)
146 PRK14948 DNA polymerase III su 99.4 3E-12 6.4E-17 150.3 19.1 190 374-598 11-225 (620)
147 COG1223 Predicted ATPase (AAA+ 99.4 2.3E-13 5E-18 137.3 7.9 103 651-769 115-225 (368)
148 KOG0732 AAA+-type ATPase conta 99.4 1.2E-13 2.5E-18 164.1 6.4 116 652-779 260-388 (1080)
149 PRK11034 clpA ATP-dependent Cl 99.4 1.5E-12 3.2E-17 155.4 15.6 201 380-606 459-718 (758)
150 TIGR00382 clpX endopeptidase C 99.4 3.9E-12 8.4E-17 141.6 17.5 224 377-607 74-388 (413)
151 TIGR03689 pup_AAA proteasome A 99.4 2.7E-13 5.8E-18 154.3 7.4 111 650-772 175-307 (512)
152 TIGR02903 spore_lon_C ATP-depe 99.4 1.3E-11 2.8E-16 145.5 21.2 229 374-639 149-430 (615)
153 PRK14971 DNA polymerase III su 99.4 1E-11 2.3E-16 145.7 20.0 192 374-600 12-227 (614)
154 PRK03992 proteasome-activating 99.4 5.2E-13 1.1E-17 149.5 8.6 114 648-773 122-243 (389)
155 COG0542 clpA ATP-binding subun 99.4 3E-12 6.5E-17 149.8 13.9 236 345-605 457-756 (786)
156 PRK09087 hypothetical protein; 99.4 1.2E-11 2.5E-16 128.3 16.6 204 369-639 11-222 (226)
157 TIGR02639 ClpA ATP-dependent C 99.4 5.3E-12 1.1E-16 152.3 15.7 201 380-606 455-714 (731)
158 PTZ00361 26 proteosome regulat 99.4 7.5E-13 1.6E-17 148.7 7.3 110 651-772 177-294 (438)
159 KOG1514 Origin recognition com 99.3 3.7E-11 8E-16 136.4 19.1 237 379-643 396-659 (767)
160 COG2607 Predicted ATPase (AAA+ 99.3 1E-10 2.2E-15 117.5 19.7 204 365-598 46-276 (287)
161 KOG0651 26S proteasome regulat 99.3 1.3E-12 2.9E-17 135.1 6.0 107 652-770 127-241 (388)
162 PRK13407 bchI magnesium chelat 99.3 1.5E-11 3.2E-16 134.0 14.1 166 374-565 3-216 (334)
163 COG1224 TIP49 DNA helicase TIP 99.3 5E-11 1.1E-15 125.7 17.3 129 478-639 292-432 (450)
164 TIGR03345 VI_ClpV1 type VI sec 99.3 1.6E-11 3.5E-16 149.2 15.4 202 379-606 566-833 (852)
165 PRK10865 protein disaggregatio 99.3 3.3E-11 7.1E-16 147.1 17.2 239 345-606 534-831 (857)
166 PRK09112 DNA polymerase III su 99.3 6.5E-11 1.4E-15 130.2 17.9 193 374-597 18-242 (351)
167 TIGR03346 chaperone_ClpB ATP-d 99.3 3.5E-11 7.7E-16 147.3 17.3 205 379-606 565-828 (852)
168 TIGR02640 gas_vesic_GvpN gas v 99.3 7.5E-11 1.6E-15 125.3 17.6 133 413-565 21-198 (262)
169 TIGR01242 26Sp45 26S proteasom 99.3 7.8E-12 1.7E-16 139.2 9.5 111 650-772 115-233 (364)
170 PRK07471 DNA polymerase III su 99.3 1.1E-10 2.5E-15 129.0 18.3 190 374-596 14-239 (365)
171 CHL00095 clpC Clp protease ATP 99.3 2.7E-11 6E-16 147.8 14.7 204 379-605 509-783 (821)
172 CHL00081 chlI Mg-protoporyphyr 99.3 5.2E-11 1.1E-15 129.9 15.2 223 374-638 12-321 (350)
173 cd00009 AAA The AAA+ (ATPases 99.3 7E-11 1.5E-15 112.2 14.2 140 383-550 2-150 (151)
174 KOG0991 Replication factor C, 99.3 5E-11 1.1E-15 118.9 13.4 194 370-595 18-215 (333)
175 PRK05564 DNA polymerase III su 99.3 1.1E-10 2.3E-15 127.5 16.8 176 377-588 2-184 (313)
176 COG0465 HflB ATP-dependent Zn 99.2 1.2E-11 2.6E-16 141.5 7.8 110 651-773 144-261 (596)
177 TIGR02030 BchI-ChlI magnesium 99.2 1.8E-10 3.9E-15 125.7 15.8 216 377-637 2-307 (337)
178 TIGR03015 pepcterm_ATPase puta 99.2 9.4E-10 2E-14 117.2 21.1 195 414-640 44-267 (269)
179 TIGR00678 holB DNA polymerase 99.2 2.1E-10 4.5E-15 115.7 15.1 148 411-587 12-184 (188)
180 TIGR01241 FtsH_fam ATP-depende 99.2 3.3E-11 7.3E-16 139.5 10.2 109 651-772 49-165 (495)
181 KOG2227 Pre-initiation complex 99.2 9.5E-10 2.1E-14 120.1 19.4 247 378-643 149-419 (529)
182 TIGR01650 PD_CobS cobaltochela 99.2 7.1E-11 1.5E-15 126.9 10.3 137 412-567 63-235 (327)
183 PF06068 TIP49: TIP49 C-termin 99.2 4.9E-10 1.1E-14 120.4 16.3 105 478-599 279-395 (398)
184 PRK04132 replication factor C 99.1 9.7E-10 2.1E-14 131.6 17.8 161 415-598 566-734 (846)
185 PRK07399 DNA polymerase III su 99.1 6.8E-10 1.5E-14 120.6 14.2 188 377-597 2-223 (314)
186 KOG1969 DNA replication checkp 99.1 1.7E-09 3.6E-14 123.3 17.5 211 370-606 262-518 (877)
187 TIGR02442 Cob-chelat-sub cobal 99.1 4.9E-10 1.1E-14 133.0 13.9 159 377-564 2-213 (633)
188 CHL00176 ftsH cell division pr 99.1 1.8E-10 4E-15 135.4 9.9 107 652-771 178-292 (638)
189 PLN00020 ribulose bisphosphate 99.1 5.3E-11 1.1E-15 128.0 4.7 73 699-771 144-229 (413)
190 PRK08058 DNA polymerase III su 99.1 1.7E-09 3.7E-14 118.6 16.3 152 377-563 3-180 (329)
191 PRK11331 5-methylcytosine-spec 99.1 7.6E-10 1.7E-14 123.2 13.5 146 378-551 174-357 (459)
192 PRK13531 regulatory ATPase Rav 99.1 1.3E-09 2.9E-14 122.2 15.0 155 380-564 21-193 (498)
193 PHA02244 ATPase-like protein 99.1 2.5E-09 5.4E-14 116.2 16.3 125 412-556 118-265 (383)
194 KOG0740 AAA+-type ATPase [Post 99.1 1.7E-10 3.7E-15 127.1 6.8 118 650-784 146-272 (428)
195 COG0470 HolB ATPase involved i 99.0 1.6E-09 3.5E-14 118.4 12.1 154 380-562 2-178 (325)
196 COG0714 MoxR-like ATPases [Gen 99.0 5.2E-10 1.1E-14 122.9 8.2 152 381-565 26-202 (329)
197 PRK05707 DNA polymerase III su 99.0 4.5E-09 9.7E-14 114.8 15.3 155 411-588 20-197 (328)
198 smart00382 AAA ATPases associa 99.0 1.9E-09 4.2E-14 101.1 10.1 131 413-552 2-147 (148)
199 TIGR00602 rad24 checkpoint pro 99.0 5.2E-09 1.1E-13 122.4 15.6 208 372-603 77-328 (637)
200 TIGR02974 phageshock_pspF psp 99.0 3.6E-09 7.7E-14 115.9 12.9 194 381-603 1-233 (329)
201 TIGR00764 lon_rel lon-related 99.0 2.5E-08 5.5E-13 117.4 20.1 52 374-440 13-64 (608)
202 KOG1942 DNA helicase, TBP-inte 99.0 2.7E-08 5.8E-13 102.5 17.5 112 478-606 297-421 (456)
203 TIGR01817 nifA Nif-specific re 98.9 4.2E-09 9.1E-14 123.3 12.0 200 374-602 191-427 (534)
204 PF05621 TniB: Bacterial TniB 98.9 8E-08 1.7E-12 101.8 20.2 186 412-609 60-275 (302)
205 PF07724 AAA_2: AAA domain (Cd 98.9 3.2E-09 6.8E-14 105.3 9.0 118 412-532 2-132 (171)
206 smart00350 MCM minichromosome 98.9 7E-09 1.5E-13 120.3 13.4 165 380-565 204-400 (509)
207 PRK11608 pspF phage shock prot 98.9 6.5E-09 1.4E-13 113.9 12.1 197 378-603 5-240 (326)
208 PF01637 Arch_ATPase: Archaeal 98.9 5.9E-09 1.3E-13 107.8 11.2 188 381-592 1-231 (234)
209 PRK06871 DNA polymerase III su 98.9 3.1E-08 6.7E-13 107.6 17.0 135 411-565 22-179 (325)
210 KOG0745 Putative ATP-dependent 98.9 1.6E-08 3.5E-13 109.2 14.3 186 414-606 227-511 (564)
211 KOG2035 Replication factor C, 98.9 3.1E-08 6.8E-13 101.7 15.6 185 374-592 8-226 (351)
212 PRK07993 DNA polymerase III su 98.9 2.8E-08 6E-13 108.9 16.5 160 411-591 22-201 (334)
213 PF07728 AAA_5: AAA domain (dy 98.9 2.7E-09 6E-14 101.9 7.5 110 415-543 1-139 (139)
214 COG1219 ClpX ATP-dependent pro 98.9 2.5E-08 5.5E-13 104.2 14.6 220 377-605 58-369 (408)
215 CHL00206 ycf2 Ycf2; Provisiona 98.9 1.5E-09 3.2E-14 135.0 6.4 71 699-769 1626-1747(2281)
216 COG1221 PspF Transcriptional r 98.9 1.5E-08 3.3E-13 111.6 13.3 205 374-605 73-311 (403)
217 KOG0990 Replication factor C, 98.9 8.1E-09 1.8E-13 108.1 10.5 190 372-597 34-231 (360)
218 PF13177 DNA_pol3_delta2: DNA 98.9 6.8E-09 1.5E-13 102.1 9.5 139 383-552 1-161 (162)
219 PRK08769 DNA polymerase III su 98.9 4.6E-08 9.9E-13 106.1 16.4 174 385-592 10-206 (319)
220 KOG0741 AAA+-type ATPase [Post 98.9 3.4E-08 7.4E-13 108.9 15.0 145 411-563 536-684 (744)
221 COG1220 HslU ATP-dependent pro 98.9 1.8E-08 3.9E-13 105.9 12.0 82 479-562 252-346 (444)
222 PRK08116 hypothetical protein; 98.9 4.2E-08 9E-13 104.4 15.1 126 413-554 114-251 (268)
223 TIGR02031 BchD-ChlD magnesium 98.8 4.5E-08 9.7E-13 115.2 15.8 189 414-637 17-256 (589)
224 PF01078 Mg_chelatase: Magnesi 98.8 1.7E-09 3.7E-14 108.8 3.3 47 377-438 1-47 (206)
225 TIGR00368 Mg chelatase-related 98.8 2.7E-08 5.8E-13 114.2 13.3 214 376-637 189-497 (499)
226 PF00004 AAA: ATPase family as 98.8 6.7E-09 1.4E-13 97.6 6.4 65 706-770 1-74 (132)
227 TIGR02329 propionate_PrpR prop 98.8 2.7E-08 5.9E-13 115.0 12.4 200 374-603 207-450 (526)
228 PRK06964 DNA polymerase III su 98.8 3.9E-08 8.5E-13 107.5 12.7 138 411-564 19-203 (342)
229 PRK11388 DNA-binding transcrip 98.8 4.4E-08 9.6E-13 117.2 14.1 198 375-602 321-553 (638)
230 PRK10820 DNA-binding transcrip 98.8 3E-08 6.6E-13 115.3 12.3 199 374-602 199-436 (520)
231 PRK05022 anaerobic nitric oxid 98.8 3.9E-08 8.5E-13 114.3 13.2 198 377-604 185-421 (509)
232 PF07726 AAA_3: ATPase family 98.8 9.7E-09 2.1E-13 95.2 5.7 113 415-543 1-129 (131)
233 PRK15429 formate hydrogenlyase 98.8 6.8E-08 1.5E-12 116.4 14.5 198 376-603 373-609 (686)
234 COG3829 RocR Transcriptional r 98.8 2.7E-08 5.9E-13 111.4 9.9 198 374-601 240-477 (560)
235 PRK15424 propionate catabolism 98.8 4.3E-08 9.3E-13 113.3 12.0 200 375-602 215-464 (538)
236 PRK06090 DNA polymerase III su 98.7 1.3E-07 2.8E-12 102.5 14.0 148 385-563 9-178 (319)
237 COG3604 FhlA Transcriptional r 98.7 6.5E-08 1.4E-12 107.0 11.2 202 375-603 219-456 (550)
238 PRK12377 putative replication 98.7 1.7E-07 3.7E-12 98.2 13.9 131 374-529 69-205 (248)
239 PRK10733 hflB ATP-dependent me 98.7 1.9E-08 4E-13 119.7 7.5 109 652-773 147-263 (644)
240 PF00158 Sigma54_activat: Sigm 98.7 1.9E-08 4.2E-13 99.4 6.1 122 381-529 1-143 (168)
241 PF03215 Rad17: Rad17 cell cyc 98.7 3.3E-07 7.1E-12 105.6 17.0 207 370-604 10-269 (519)
242 PRK09862 putative ATP-dependen 98.7 1.9E-07 4.1E-12 106.9 13.8 215 376-637 188-490 (506)
243 CHL00181 cbbX CbbX; Provisiona 98.7 4.6E-08 1E-12 105.1 8.4 100 657-769 23-137 (287)
244 COG5271 MDN1 AAA ATPase contai 98.6 4.2E-07 9E-12 110.0 16.0 141 412-567 1542-1705(4600)
245 COG2204 AtoC Response regulato 98.6 9.3E-08 2E-12 107.2 10.1 198 376-603 138-374 (464)
246 smart00763 AAA_PrkA PrkA AAA d 98.6 5E-07 1.1E-11 98.5 14.7 55 377-439 48-104 (361)
247 PRK07952 DNA replication prote 98.6 5.2E-07 1.1E-11 94.4 14.2 73 414-490 100-175 (244)
248 COG1239 ChlI Mg-chelatase subu 98.6 3.3E-07 7.2E-12 100.2 13.1 166 375-567 13-234 (423)
249 PRK08699 DNA polymerase III su 98.6 2.3E-07 5E-12 101.3 11.8 137 411-563 19-183 (325)
250 TIGR02881 spore_V_K stage V sp 98.6 6.3E-08 1.4E-12 102.9 7.2 61 705-768 44-119 (261)
251 KOG1051 Chaperone HSP104 and r 98.6 9.8E-07 2.1E-11 105.5 17.8 130 380-529 563-710 (898)
252 PRK08181 transposase; Validate 98.6 3.1E-07 6.8E-12 97.4 12.3 104 412-530 105-209 (269)
253 KOG2680 DNA helicase TIP49, TB 98.6 1.9E-06 4E-11 89.5 17.3 129 478-639 289-429 (454)
254 PRK06526 transposase; Provisio 98.6 2E-07 4.4E-12 98.3 10.7 75 412-490 97-172 (254)
255 PTZ00111 DNA replication licen 98.6 3.9E-07 8.5E-12 109.0 13.8 170 379-565 450-657 (915)
256 PRK06921 hypothetical protein; 98.6 3E-07 6.4E-12 97.8 11.3 72 412-488 116-188 (266)
257 COG1484 DnaC DNA replication p 98.6 4.5E-07 9.7E-12 95.7 12.6 105 412-530 104-209 (254)
258 PRK06835 DNA replication prote 98.6 3.7E-07 8.1E-12 99.6 12.1 106 414-533 184-293 (329)
259 TIGR02915 PEP_resp_reg putativ 98.5 2.8E-07 6.1E-12 105.6 10.3 196 377-602 137-371 (445)
260 TIGR02880 cbbX_cfxQ probable R 98.5 2.1E-07 4.5E-12 100.0 8.5 97 659-768 24-135 (284)
261 PRK09183 transposase/IS protei 98.5 4.9E-07 1.1E-11 95.8 10.8 105 411-529 100-205 (259)
262 PRK08939 primosomal protein Dn 98.5 5.4E-07 1.2E-11 97.6 10.4 74 412-489 155-229 (306)
263 PF05729 NACHT: NACHT domain 98.5 3.5E-06 7.7E-11 82.1 14.6 146 415-567 2-165 (166)
264 PRK05917 DNA polymerase III su 98.4 2.7E-06 5.8E-11 90.7 14.0 123 411-552 17-154 (290)
265 PRK13765 ATP-dependent proteas 98.4 3.5E-06 7.6E-11 99.3 15.1 51 374-439 26-76 (637)
266 PRK10923 glnG nitrogen regulat 98.4 1.6E-06 3.5E-11 100.1 12.1 198 377-603 136-371 (469)
267 PLN03210 Resistant to P. syrin 98.4 7.4E-06 1.6E-10 104.5 18.6 206 340-588 157-389 (1153)
268 PRK06851 hypothetical protein; 98.4 6.1E-06 1.3E-10 90.9 15.5 36 414-449 31-66 (367)
269 KOG2228 Origin recognition com 98.4 2.6E-06 5.7E-11 90.1 11.7 166 380-565 25-219 (408)
270 PF14532 Sigma54_activ_2: Sigm 98.4 2.9E-07 6.4E-12 88.0 4.4 106 383-527 2-107 (138)
271 PF01695 IstB_IS21: IstB-like 98.4 4.8E-07 1E-11 90.4 5.8 104 411-529 45-149 (178)
272 COG0606 Predicted ATPase with 98.3 3.6E-07 7.8E-12 101.3 4.4 48 375-437 175-222 (490)
273 PRK11361 acetoacetate metaboli 98.3 1.7E-06 3.8E-11 99.4 10.0 196 377-602 141-375 (457)
274 PF13173 AAA_14: AAA domain 98.3 4.2E-06 9E-11 78.9 10.7 71 414-489 3-73 (128)
275 PRK15115 response regulator Gl 98.3 1.8E-06 4E-11 98.9 10.0 171 413-602 157-366 (444)
276 PF00931 NB-ARC: NB-ARC domain 98.3 1E-05 2.3E-10 86.8 14.8 179 385-595 2-202 (287)
277 PF13401 AAA_22: AAA domain; P 98.3 3.1E-06 6.7E-11 79.6 9.0 103 413-527 4-125 (131)
278 PRK13406 bchD magnesium chelat 98.3 5.2E-06 1.1E-10 97.1 12.7 189 414-637 26-248 (584)
279 TIGR01818 ntrC nitrogen regula 98.3 3.9E-06 8.5E-11 96.7 11.7 196 379-603 134-367 (463)
280 TIGR02237 recomb_radB DNA repa 98.3 3.5E-06 7.6E-11 86.3 9.6 83 409-491 8-111 (209)
281 KOG2170 ATPase of the AAA+ sup 98.3 1.8E-05 3.9E-10 82.8 14.5 189 380-585 83-320 (344)
282 PRK07132 DNA polymerase III su 98.2 2.5E-05 5.5E-10 84.2 16.2 129 412-563 17-160 (299)
283 PRK07276 DNA polymerase III su 98.2 2.7E-05 5.8E-10 83.4 16.1 170 384-597 7-199 (290)
284 PF12775 AAA_7: P-loop contain 98.2 1.3E-06 2.9E-11 93.1 6.1 140 412-567 32-195 (272)
285 KOG1970 Checkpoint RAD17-RFC c 98.2 3.7E-05 8.1E-10 86.2 17.3 208 372-603 75-320 (634)
286 PF05496 RuvB_N: Holliday junc 98.2 9.2E-07 2E-11 89.9 3.8 63 704-773 51-120 (233)
287 TIGR02655 circ_KaiC circadian 98.2 4.5E-06 9.7E-11 96.5 9.6 232 409-728 17-288 (484)
288 COG5271 MDN1 AAA ATPase contai 98.2 2.2E-05 4.7E-10 95.8 14.1 133 414-566 889-1048(4600)
289 PF07724 AAA_2: AAA domain (Cd 98.1 3.6E-07 7.7E-12 90.7 -0.7 63 704-768 4-82 (171)
290 COG3267 ExeA Type II secretory 98.1 0.00014 2.9E-09 75.0 17.6 181 415-608 53-258 (269)
291 PF03969 AFG1_ATPase: AFG1-lik 98.1 4.6E-06 9.9E-11 92.3 7.5 103 410-530 59-168 (362)
292 cd01120 RecA-like_NTPases RecA 98.1 6.3E-06 1.4E-10 79.9 7.0 76 416-491 2-99 (165)
293 KOG0744 AAA+-type ATPase [Post 98.1 4.3E-06 9.3E-11 87.9 5.5 71 705-777 179-273 (423)
294 KOG0743 AAA+-type ATPase [Post 98.1 3.4E-06 7.3E-11 93.0 4.7 86 667-768 211-300 (457)
295 smart00382 AAA ATPases associa 98.1 1.7E-06 3.6E-11 81.0 2.1 69 704-772 3-96 (148)
296 TIGR00763 lon ATP-dependent pr 98.1 7.4E-06 1.6E-10 100.0 8.2 68 703-771 347-431 (775)
297 PRK05818 DNA polymerase III su 98.0 1.7E-05 3.8E-10 82.8 9.0 121 411-552 5-147 (261)
298 TIGR00635 ruvB Holliday juncti 98.0 4.8E-06 1E-10 90.5 5.1 95 655-771 2-98 (305)
299 KOG0478 DNA replication licens 98.0 3.2E-05 6.8E-10 88.5 11.3 164 380-563 430-624 (804)
300 PRK10365 transcriptional regul 98.0 3.3E-05 7.1E-10 88.4 11.9 190 380-602 140-371 (441)
301 COG2256 MGS1 ATPase related to 98.0 7.5E-06 1.6E-10 88.9 6.0 68 703-771 48-121 (436)
302 KOG0989 Replication factor C, 98.0 6.8E-06 1.5E-10 86.2 5.4 96 653-773 32-148 (346)
303 PRK00080 ruvB Holliday junctio 98.0 9.5E-06 2.1E-10 89.2 5.9 95 653-771 21-119 (328)
304 COG1241 MCM2 Predicted ATPase 98.0 1.5E-05 3.2E-10 93.6 7.7 155 378-555 285-473 (682)
305 KOG0991 Replication factor C, 97.9 2.5E-05 5.4E-10 78.8 8.0 66 703-768 48-127 (333)
306 PRK09361 radB DNA repair and r 97.9 5.2E-05 1.1E-09 78.7 10.8 42 409-450 19-60 (225)
307 PRK05342 clpX ATP-dependent pr 97.9 2.8E-05 6.1E-10 87.5 9.4 65 704-769 109-188 (412)
308 PF00910 RNA_helicase: RNA hel 97.9 3.6E-05 7.8E-10 70.2 8.4 25 416-440 1-25 (107)
309 COG1618 Predicted nucleotide k 97.9 0.00018 4E-09 69.0 13.3 34 412-445 4-37 (179)
310 PLN03025 replication factor C 97.9 2.7E-05 5.7E-10 85.4 8.9 68 704-771 35-116 (319)
311 TIGR02012 tigrfam_recA protein 97.9 3.1E-05 6.8E-10 84.0 8.7 119 409-527 51-189 (321)
312 KOG2543 Origin recognition com 97.9 0.00023 5E-09 77.0 14.0 161 379-566 6-194 (438)
313 PHA00729 NTP-binding motif con 97.9 0.0001 2.2E-09 75.7 11.0 25 414-438 18-42 (226)
314 PF13191 AAA_16: AAA ATPase do 97.9 9.1E-05 2E-09 73.8 10.5 50 381-440 2-51 (185)
315 KOG0066 eIF2-interacting prote 97.9 0.00025 5.5E-09 77.2 14.2 34 414-447 291-324 (807)
316 PF12774 AAA_6: Hydrolytic ATP 97.8 7.6E-05 1.7E-09 77.6 10.1 126 413-560 32-175 (231)
317 TIGR00382 clpX endopeptidase C 97.8 1.9E-05 4.1E-10 88.5 5.9 64 705-769 118-196 (413)
318 PF14516 AAA_35: AAA-like doma 97.8 0.001 2.2E-08 73.3 19.3 176 412-597 30-241 (331)
319 cd00983 recA RecA is a bacter 97.8 6.5E-05 1.4E-09 81.6 9.3 119 409-527 51-189 (325)
320 TIGR02688 conserved hypothetic 97.8 0.00057 1.2E-08 76.0 16.4 82 411-513 207-289 (449)
321 PRK06067 flagellar accessory p 97.8 0.00012 2.7E-09 76.4 10.8 42 409-450 21-62 (234)
322 cd01124 KaiC KaiC is a circadi 97.8 0.00012 2.7E-09 73.1 10.2 35 416-450 2-36 (187)
323 COG3283 TyrR Transcriptional r 97.7 0.0001 2.2E-09 78.6 9.0 205 371-603 196-432 (511)
324 PRK11889 flhF flagellar biosyn 97.7 0.0006 1.3E-08 75.3 15.1 135 385-532 217-366 (436)
325 PF07693 KAP_NTPase: KAP famil 97.7 0.0019 4.2E-08 70.6 19.3 79 477-567 172-265 (325)
326 PF06309 Torsin: Torsin; Inte 97.7 0.0002 4.3E-09 66.6 9.5 62 380-447 26-87 (127)
327 PRK07940 DNA polymerase III su 97.7 9E-05 2E-09 83.1 8.8 59 655-728 3-61 (394)
328 PRK00771 signal recognition pa 97.7 0.00064 1.4E-08 77.1 15.6 113 411-534 93-223 (437)
329 PRK06893 DNA replication initi 97.7 3.7E-05 8E-10 80.1 5.2 63 703-768 39-105 (229)
330 PRK13342 recombination factor 97.7 6.8E-05 1.5E-09 85.1 7.7 68 704-771 37-109 (413)
331 PRK11331 5-methylcytosine-spec 97.7 8.1E-05 1.8E-09 83.6 8.0 65 703-767 194-285 (459)
332 PF13604 AAA_30: AAA domain; P 97.7 8E-05 1.7E-09 75.7 7.3 104 414-530 19-133 (196)
333 PRK08533 flagellar accessory p 97.7 0.0003 6.5E-09 73.3 11.7 82 409-490 20-130 (230)
334 PF00448 SRP54: SRP54-type pro 97.7 0.00055 1.2E-08 69.5 13.3 113 413-534 1-131 (196)
335 PRK12723 flagellar biosynthesi 97.7 0.00071 1.5E-08 75.6 15.2 116 412-538 173-307 (388)
336 PRK14974 cell division protein 97.7 0.00061 1.3E-08 74.7 14.4 39 412-450 139-177 (336)
337 PRK08181 transposase; Validate 97.7 0.00054 1.2E-08 72.9 13.5 63 704-768 107-181 (269)
338 KOG1968 Replication factor C, 97.7 5.3E-05 1.1E-09 91.7 6.5 205 375-602 316-535 (871)
339 COG4088 Predicted nucleotide k 97.7 0.00019 4.2E-09 71.4 9.2 72 416-489 4-85 (261)
340 cd00009 AAA The AAA+ (ATPases 97.7 3.6E-05 7.7E-10 72.6 4.0 63 704-766 20-96 (151)
341 PF00493 MCM: MCM2/3/5 family 97.7 1.3E-05 2.8E-10 88.1 1.0 163 380-568 25-224 (331)
342 KOG0480 DNA replication licens 97.7 0.00065 1.4E-08 77.6 14.4 233 378-647 344-651 (764)
343 PHA02624 large T antigen; Prov 97.7 0.00016 3.5E-09 83.2 9.7 123 409-551 427-561 (647)
344 KOG0742 AAA+-type ATPase [Post 97.7 0.00011 2.5E-09 79.4 7.8 65 705-770 386-459 (630)
345 cd01394 radB RadB. The archaea 97.6 0.00027 5.8E-09 72.9 10.5 41 409-449 15-55 (218)
346 COG1485 Predicted ATPase [Gene 97.6 6.5E-05 1.4E-09 80.7 5.7 100 411-529 63-170 (367)
347 PRK14956 DNA polymerase III su 97.6 0.00016 3.4E-09 82.2 9.0 53 652-728 13-65 (484)
348 PRK12402 replication factor C 97.6 6.5E-05 1.4E-09 82.7 5.8 25 704-728 37-61 (337)
349 KOG0482 DNA replication licens 97.6 0.00012 2.7E-09 81.1 7.6 210 380-607 343-593 (721)
350 PRK04195 replication factor C 97.6 7.3E-05 1.6E-09 86.6 6.1 95 652-768 9-112 (482)
351 cd03283 ABC_MutS-like MutS-lik 97.6 0.00047 1E-08 70.3 11.3 114 410-533 22-151 (199)
352 PRK06526 transposase; Provisio 97.6 9.3E-05 2E-09 78.2 6.1 63 703-767 98-172 (254)
353 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.0006 1.3E-08 72.4 12.3 43 409-451 32-74 (259)
354 COG5245 DYN1 Dynein, heavy cha 97.6 0.00075 1.6E-08 82.7 14.0 178 410-603 1491-1716(3164)
355 cd01393 recA_like RecA is a b 97.6 0.00035 7.7E-09 72.3 10.2 119 409-527 15-166 (226)
356 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00016 3.4E-09 72.3 7.1 77 411-489 23-101 (177)
357 cd01121 Sms Sms (bacterial rad 97.6 0.0003 6.5E-09 78.3 10.1 81 409-491 78-172 (372)
358 PRK09354 recA recombinase A; P 97.6 0.00027 5.8E-09 77.5 9.2 83 409-491 56-152 (349)
359 COG2255 RuvB Holliday junction 97.6 9.3E-05 2E-09 77.1 5.3 62 705-773 54-122 (332)
360 PRK14962 DNA polymerase III su 97.6 0.00017 3.8E-09 82.7 8.1 25 704-728 37-61 (472)
361 cd00046 DEXDc DEAD-like helica 97.5 0.00068 1.5E-08 63.1 10.8 26 415-440 2-27 (144)
362 KOG0927 Predicted transporter 97.5 0.0024 5.1E-08 72.1 16.3 28 410-437 98-125 (614)
363 COG1219 ClpX ATP-dependent pro 97.5 0.00013 2.8E-09 77.0 5.9 61 705-769 99-177 (408)
364 PRK04296 thymidine kinase; Pro 97.5 0.0002 4.2E-09 72.5 7.2 33 415-447 4-36 (190)
365 TIGR00064 ftsY signal recognit 97.5 0.002 4.4E-08 68.8 15.2 41 411-451 70-110 (272)
366 cd01128 rho_factor Transcripti 97.5 0.00071 1.5E-08 71.2 11.5 30 411-440 14-43 (249)
367 PRK11823 DNA repair protein Ra 97.5 0.00046 1E-08 78.9 10.9 82 409-492 76-171 (446)
368 cd01131 PilT Pilus retraction 97.5 0.00052 1.1E-08 69.9 10.1 71 415-486 3-83 (198)
369 COG4619 ABC-type uncharacteriz 97.5 0.00039 8.5E-09 67.2 8.4 29 410-438 26-54 (223)
370 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00032 6.8E-09 73.2 8.6 120 409-528 15-168 (235)
371 PRK14722 flhF flagellar biosyn 97.5 0.0004 8.6E-09 77.0 9.7 116 411-538 135-267 (374)
372 PF04665 Pox_A32: Poxvirus A32 97.5 0.0014 3E-08 68.2 13.1 138 411-564 11-169 (241)
373 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00099 2.1E-08 69.8 12.3 42 409-450 17-58 (237)
374 PRK10536 hypothetical protein; 97.5 0.00087 1.9E-08 70.2 11.5 23 415-437 76-98 (262)
375 PRK14970 DNA polymerase III su 97.5 0.00022 4.8E-09 79.7 7.7 53 652-728 12-64 (367)
376 cd03216 ABC_Carb_Monos_I This 97.5 0.00035 7.5E-09 68.8 8.1 114 410-534 23-146 (163)
377 cd00984 DnaB_C DnaB helicase C 97.5 0.00078 1.7E-08 70.5 11.1 42 409-450 9-51 (242)
378 PRK14961 DNA polymerase III su 97.5 0.00028 6E-09 78.8 8.2 52 653-728 12-63 (363)
379 PRK14963 DNA polymerase III su 97.5 0.00027 5.8E-09 81.8 8.2 52 652-728 9-61 (504)
380 TIGR01420 pilT_fam pilus retra 97.5 0.00043 9.3E-09 76.6 9.4 74 413-487 122-205 (343)
381 PRK14949 DNA polymerase III su 97.5 0.00028 6.2E-09 84.8 8.3 54 652-729 11-64 (944)
382 TIGR01618 phage_P_loop phage n 97.4 0.00023 5.1E-09 73.2 6.7 23 413-435 12-34 (220)
383 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00016 3.6E-09 74.7 5.5 64 703-768 38-104 (226)
384 PRK05973 replicative DNA helic 97.4 0.0022 4.7E-08 66.9 13.6 43 409-451 60-102 (237)
385 KOG2028 ATPase related to the 97.4 8.6E-05 1.9E-09 79.3 3.1 66 703-768 162-236 (554)
386 PRK06581 DNA polymerase III su 97.4 0.0029 6.3E-08 65.3 13.9 150 413-580 15-176 (263)
387 PRK12377 putative replication 97.4 8.8E-05 1.9E-09 77.9 3.1 61 704-766 102-175 (248)
388 PF03266 NTPase_1: NTPase; In 97.4 0.00015 3.2E-09 71.8 4.5 26 415-440 1-26 (168)
389 KOG0477 DNA replication licens 97.4 0.00054 1.2E-08 77.8 9.4 58 380-438 450-507 (854)
390 PRK07952 DNA replication prote 97.4 0.0003 6.5E-09 73.8 6.9 61 705-767 101-175 (244)
391 PF06745 KaiC: KaiC; InterPro 97.4 0.00046 9.9E-09 71.6 8.3 102 409-513 15-148 (226)
392 KOG2383 Predicted ATPase [Gene 97.4 0.0012 2.7E-08 71.8 11.5 160 411-601 112-298 (467)
393 COG1116 TauB ABC-type nitrate/ 97.4 0.0017 3.6E-08 67.2 11.8 27 411-437 27-53 (248)
394 COG0466 Lon ATP-dependent Lon 97.4 0.00037 8E-09 80.9 7.7 70 704-774 351-437 (782)
395 PF09848 DUF2075: Uncharacteri 97.4 0.00081 1.8E-08 74.8 10.4 77 415-491 3-97 (352)
396 PRK14958 DNA polymerase III su 97.4 0.00044 9.5E-09 80.2 8.4 53 652-728 11-63 (509)
397 cd01122 GP4d_helicase GP4d_hel 97.4 0.0011 2.3E-08 70.8 10.9 42 409-450 26-68 (271)
398 PRK12724 flagellar biosynthesi 97.4 0.0049 1.1E-07 69.0 16.2 118 412-538 222-354 (432)
399 PRK08084 DNA replication initi 97.4 0.00029 6.3E-09 73.7 6.2 24 704-727 46-69 (235)
400 TIGR02928 orc1/cdc6 family rep 97.3 0.00033 7.2E-09 78.1 6.9 51 656-727 14-64 (365)
401 PF01695 IstB_IS21: IstB-like 97.3 8.3E-05 1.8E-09 74.3 1.8 27 703-729 47-73 (178)
402 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0003 6.5E-09 74.8 6.2 22 705-726 23-44 (262)
403 PRK12323 DNA polymerase III su 97.3 0.00047 1E-08 80.5 8.2 54 652-729 11-64 (700)
404 PRK14960 DNA polymerase III su 97.3 0.0005 1.1E-08 80.5 8.4 53 652-728 10-62 (702)
405 PRK09376 rho transcription ter 97.3 0.00047 1E-08 76.1 7.7 33 413-445 169-201 (416)
406 PRK13341 recombination factor 97.3 0.00028 6.1E-09 84.8 6.5 68 703-771 52-126 (725)
407 PRK10787 DNA-binding ATP-depen 97.3 0.00037 8E-09 84.8 7.6 93 658-771 323-433 (784)
408 PRK08691 DNA polymerase III su 97.3 0.00051 1.1E-08 81.0 8.5 53 652-728 11-63 (709)
409 COG0488 Uup ATPase components 97.3 0.0022 4.7E-08 74.5 13.3 248 408-724 24-369 (530)
410 PRK07003 DNA polymerase III su 97.3 0.00054 1.2E-08 81.0 8.4 53 652-728 11-63 (830)
411 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00074 1.6E-08 71.9 8.8 96 376-487 57-159 (264)
412 PRK10416 signal recognition pa 97.3 0.0065 1.4E-07 66.4 16.4 41 411-451 112-152 (318)
413 PHA02244 ATPase-like protein 97.3 0.00096 2.1E-08 73.2 9.8 60 705-766 121-192 (383)
414 COG3284 AcoR Transcriptional a 97.3 0.00076 1.6E-08 77.6 9.3 171 413-603 336-540 (606)
415 PTZ00202 tuzin; Provisional 97.3 0.0069 1.5E-07 67.6 16.3 180 376-597 259-458 (550)
416 COG1373 Predicted ATPase (AAA+ 97.3 0.0019 4.2E-08 72.8 12.4 130 406-560 31-162 (398)
417 PRK08939 primosomal protein Dn 97.3 0.00036 7.9E-09 75.7 6.4 62 703-766 156-229 (306)
418 PRK06645 DNA polymerase III su 97.3 0.00061 1.3E-08 78.7 8.5 52 652-727 16-67 (507)
419 PRK08116 hypothetical protein; 97.3 0.00014 3E-09 77.6 3.1 25 704-728 115-139 (268)
420 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00061 1.3E-08 65.7 7.2 108 410-533 23-130 (144)
421 PRK00440 rfc replication facto 97.3 0.00033 7.1E-09 76.4 6.0 52 653-729 13-64 (319)
422 PRK08903 DnaA regulatory inact 97.3 0.00017 3.7E-09 74.9 3.6 62 704-768 43-104 (227)
423 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0008 1.7E-08 65.6 8.1 114 410-535 22-145 (157)
424 PRK10867 signal recognition pa 97.3 0.0049 1.1E-07 69.9 15.3 79 411-489 98-195 (433)
425 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0029 6.2E-08 61.8 11.5 35 415-449 4-38 (159)
426 cd03230 ABC_DR_subfamily_A Thi 97.3 0.0011 2.4E-08 65.8 8.8 28 410-437 23-50 (173)
427 PRK14955 DNA polymerase III su 97.3 0.00075 1.6E-08 76.2 8.4 54 652-729 11-64 (397)
428 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0029 6.3E-08 65.2 12.1 116 414-536 30-160 (213)
429 PF13173 AAA_14: AAA domain 97.2 0.00074 1.6E-08 63.6 7.1 63 704-767 3-74 (128)
430 TIGR02397 dnaX_nterm DNA polym 97.2 0.00069 1.5E-08 75.2 7.9 53 652-728 9-61 (355)
431 PRK04328 hypothetical protein; 97.2 0.0034 7.3E-08 66.3 12.7 41 409-449 19-59 (249)
432 PRK08727 hypothetical protein; 97.2 0.00031 6.8E-09 73.4 4.9 62 705-768 43-107 (233)
433 TIGR01650 PD_CobS cobaltochela 97.2 8.1E-05 1.7E-09 80.6 0.4 67 703-771 64-151 (327)
434 PRK15455 PrkA family serine pr 97.2 0.00039 8.5E-09 79.8 5.9 57 376-439 73-129 (644)
435 PF13207 AAA_17: AAA domain; P 97.2 0.00031 6.6E-09 65.1 4.2 23 416-438 2-24 (121)
436 PRK12726 flagellar biosynthesi 97.2 0.0049 1.1E-07 68.0 14.0 65 384-451 180-244 (407)
437 KOG0745 Putative ATP-dependent 97.2 0.00043 9.4E-09 75.7 5.8 69 705-774 228-311 (564)
438 TIGR02858 spore_III_AA stage I 97.2 0.00088 1.9E-08 71.3 8.1 99 414-530 112-229 (270)
439 PF05673 DUF815: Protein of un 97.2 0.00054 1.2E-08 70.9 6.2 87 652-763 22-115 (249)
440 PRK09519 recA DNA recombinatio 97.2 0.001 2.2E-08 79.8 9.4 83 409-491 56-152 (790)
441 COG2874 FlaH Predicted ATPases 97.2 0.0021 4.5E-08 64.8 10.0 132 399-539 12-176 (235)
442 COG3854 SpoIIIAA ncharacterize 97.2 0.00075 1.6E-08 68.4 6.9 77 412-488 136-229 (308)
443 PRK04841 transcriptional regul 97.2 0.0078 1.7E-07 75.4 17.8 156 413-588 32-219 (903)
444 TIGR01425 SRP54_euk signal rec 97.2 0.0037 7.9E-08 70.5 13.2 40 412-451 99-138 (429)
445 PRK05703 flhF flagellar biosyn 97.2 0.0037 8E-08 71.0 13.4 115 412-537 220-351 (424)
446 cd03228 ABCC_MRP_Like The MRP 97.2 0.0017 3.8E-08 64.3 9.5 29 410-438 25-53 (171)
447 PRK07133 DNA polymerase III su 97.2 0.00084 1.8E-08 79.9 8.4 54 652-729 13-66 (725)
448 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0034 7.3E-08 65.1 12.1 42 409-450 12-53 (224)
449 PRK14088 dnaA chromosomal repl 97.2 0.00056 1.2E-08 78.2 6.8 64 705-768 132-208 (440)
450 COG1484 DnaC DNA replication p 97.2 0.00019 4.1E-09 75.9 2.7 63 703-766 105-179 (254)
451 PF05707 Zot: Zonular occluden 97.2 0.00018 4E-09 72.9 2.4 126 416-550 3-144 (193)
452 PRK06305 DNA polymerase III su 97.2 0.00091 2E-08 76.6 8.4 54 652-729 12-65 (451)
453 PRK14957 DNA polymerase III su 97.2 0.0011 2.4E-08 77.1 9.1 52 653-728 12-63 (546)
454 TIGR02525 plasmid_TraJ plasmid 97.2 0.0015 3.2E-08 72.7 9.6 74 414-487 150-235 (372)
455 TIGR00416 sms DNA repair prote 97.2 0.0018 3.9E-08 74.2 10.6 81 409-491 90-184 (454)
456 PRK14969 DNA polymerase III su 97.2 0.00084 1.8E-08 78.4 7.8 52 653-728 12-63 (527)
457 cd03247 ABCC_cytochrome_bd The 97.2 0.0024 5.2E-08 63.7 10.1 29 410-438 25-53 (178)
458 PRK13695 putative NTPase; Prov 97.1 0.0053 1.2E-07 61.0 12.4 27 415-441 2-28 (174)
459 KOG1969 DNA replication checkp 97.1 0.00077 1.7E-08 78.2 7.0 60 705-765 328-398 (877)
460 PHA02774 E1; Provisional 97.1 0.0014 2.9E-08 75.6 8.8 37 410-448 431-467 (613)
461 COG1066 Sms Predicted ATP-depe 97.1 0.0029 6.4E-08 69.4 10.9 82 409-493 89-184 (456)
462 PRK14086 dnaA chromosomal repl 97.1 0.0004 8.7E-09 81.0 4.6 78 705-783 316-408 (617)
463 COG2909 MalT ATP-dependent tra 97.1 0.011 2.5E-07 70.1 16.3 180 374-588 14-227 (894)
464 TIGR00678 holB DNA polymerase 97.1 0.00082 1.8E-08 67.7 6.3 26 704-729 15-40 (188)
465 cd03115 SRP The signal recogni 97.1 0.0086 1.9E-07 59.3 13.5 36 415-450 2-37 (173)
466 PF10236 DAP3: Mitochondrial r 97.1 0.028 6E-07 61.3 18.5 128 465-593 141-307 (309)
467 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0026 5.7E-08 64.8 10.0 21 414-434 29-49 (200)
468 cd03214 ABC_Iron-Siderophores_ 97.1 0.0018 3.9E-08 64.8 8.6 29 410-438 22-50 (180)
469 TIGR02903 spore_lon_C ATP-depe 97.1 0.0024 5.1E-08 76.1 10.9 25 703-727 175-199 (615)
470 TIGR00602 rad24 checkpoint pro 97.1 0.0017 3.6E-08 76.8 9.4 97 653-769 80-210 (637)
471 PRK07764 DNA polymerase III su 97.1 0.0011 2.5E-08 80.7 8.3 53 652-728 10-62 (824)
472 cd03227 ABC_Class2 ABC-type Cl 97.1 0.0039 8.3E-08 61.3 10.6 27 413-439 21-47 (162)
473 PRK13531 regulatory ATPase Rav 97.1 0.00076 1.6E-08 76.6 6.2 58 661-727 6-63 (498)
474 PRK00411 cdc6 cell division co 97.1 0.0019 4.1E-08 72.8 9.6 24 704-727 56-79 (394)
475 PRK14964 DNA polymerase III su 97.1 0.00086 1.9E-08 76.9 6.8 52 652-727 8-59 (491)
476 PRK00149 dnaA chromosomal repl 97.1 0.00076 1.6E-08 77.5 6.4 64 705-769 150-226 (450)
477 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0052 1.1E-07 64.8 12.3 32 416-447 2-33 (249)
478 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0027 5.9E-08 77.2 11.4 102 414-528 369-477 (744)
479 COG2884 FtsE Predicted ATPase 97.1 0.0027 6E-08 62.8 9.1 29 410-438 25-53 (223)
480 TIGR00959 ffh signal recogniti 97.1 0.012 2.6E-07 66.8 15.6 78 412-489 98-194 (428)
481 PRK14948 DNA polymerase III su 97.1 0.0013 2.9E-08 78.0 8.4 54 652-729 11-64 (620)
482 TIGR01448 recD_rel helicase, p 97.1 0.0024 5.3E-08 77.3 10.7 103 414-530 339-455 (720)
483 PRK09518 bifunctional cytidyla 97.1 0.0054 1.2E-07 74.5 13.6 24 415-438 3-26 (712)
484 PF13671 AAA_33: AAA domain; P 97.1 0.0016 3.4E-08 62.1 7.3 23 416-438 2-24 (143)
485 PRK14959 DNA polymerase III su 97.0 0.0015 3.3E-08 76.6 8.4 26 703-728 38-63 (624)
486 cd03246 ABCC_Protease_Secretio 97.0 0.0031 6.7E-08 62.6 9.6 28 411-438 26-53 (173)
487 cd03243 ABC_MutS_homologs The 97.0 0.0047 1E-07 63.0 11.1 26 411-436 27-52 (202)
488 PRK14532 adenylate kinase; Pro 97.0 0.0044 9.5E-08 62.3 10.6 36 415-457 2-37 (188)
489 cd03229 ABC_Class3 This class 97.0 0.0022 4.8E-08 64.0 8.4 29 410-438 23-51 (178)
490 TIGR00767 rho transcription te 97.0 0.0021 4.6E-08 71.3 8.9 30 411-440 166-195 (415)
491 smart00487 DEXDc DEAD-like hel 97.0 0.005 1.1E-07 61.0 10.9 24 414-437 25-49 (201)
492 KOG0481 DNA replication licens 97.0 0.026 5.7E-07 63.3 17.1 57 380-437 332-388 (729)
493 PRK06921 hypothetical protein; 97.0 0.0013 2.8E-08 70.1 6.9 25 704-728 118-142 (266)
494 PHA02544 44 clamp loader, smal 97.0 0.0023 5E-08 69.9 9.1 62 705-766 45-112 (316)
495 PRK09183 transposase/IS protei 97.0 0.00045 9.7E-09 73.3 3.4 63 704-767 103-177 (259)
496 PRK14950 DNA polymerase III su 97.0 0.0015 3.2E-08 77.5 8.0 53 652-728 11-63 (585)
497 PRK07994 DNA polymerase III su 97.0 0.0016 3.4E-08 77.1 8.1 52 653-728 12-63 (647)
498 PRK08118 topology modulation p 97.0 0.00088 1.9E-08 66.3 5.1 24 415-438 3-26 (167)
499 PRK14953 DNA polymerase III su 97.0 0.0023 5E-08 73.9 9.3 53 652-728 11-63 (486)
500 PRK06835 DNA replication prote 97.0 0.0004 8.7E-09 76.1 2.9 26 704-729 184-209 (329)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-68 Score=582.00 Aligned_cols=392 Identities=31% Similarity=0.459 Sum_probs=349.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
..++|.+|+|++.++.+|.+++.. +++|+.|..+|+.||+|||||||||||||+||++||.+++ ++|+.+++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~isApe 258 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-----VPFLSISAPE 258 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-----CceEeecchh
Confidence 367999999999999999999988 9999999999999999999999999999999999999995 9999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCC----CcEEEeccCCc
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR----GQVVLIGATNR 529 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~----~~vivIattn~ 529 (791)
+++.+.|++++.++.+|+.|...+||||||||||++.+++...+..+.++++.+||+.|+++... ..|+||+|||+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999999999988899999999999999998654 67999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
|+.||++|+|+|||++.|.+..|+..+|..||+.+++++.+..+.++ ..||..|.||.|+||.+||.+|+..|++|...
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~-~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF-KQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH-HHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988877776 79999999999999999999999999998654
Q ss_pred CccC---------C-------Ccc---c---------c------------------ccccccceeHHHHHHHhccccccc
Q 003859 610 QVYT---------S-------DDK---F---------L------------------IDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 610 ~~~~---------~-------~~~---~---------~------------------~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
.... + .+. . . .....+.|+.+||..|+..++|++
T Consensus 418 ~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSa 497 (802)
T KOG0733|consen 418 QSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSA 497 (802)
T ss_pred cccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcch
Confidence 2220 0 000 0 0 001235689999999999999999
Q ss_pred ccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHH
Q 003859 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILG 723 (791)
Q Consensus 644 ~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~ 723 (791)
.+...+..|.|+|.+||+|+..-.++..+|-. |+++++.|.++|+. .+.|||||||||||||+||+++
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~---PiK~pd~~k~lGi~---------~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILA---PIKRPDLFKALGID---------APSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhh---hccCHHHHHHhCCC---------CCCceEEeCCCCccHHHHHHHH
Confidence 99999999999999999998887777777655 99999999999876 3569999999999999777776
Q ss_pred HH----HHcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccccccccccccccccc
Q 003859 724 LQ----FYMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFGGRTHMNS 786 (791)
Q Consensus 724 ~~----~~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~~~~~~~~ 786 (791)
|. .|..+++|.|...|+ ..++++|++|+..+||||||||||+|++.|+..+ ...+.|-+|-
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNq 634 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQ 634 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHH
Confidence 64 367789999999887 6789999999999999999999999999998776 4455555543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-57 Score=502.23 Aligned_cols=371 Identities=34% Similarity=0.506 Sum_probs=335.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++ ++++|+......+.+.+.+|+.++.+|..+|+.+|+++|+|||||||||.+++++|++.+ +.++.+++..
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~pe 253 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPE 253 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC-----ceeEecccHH
Confidence 5566 789999999999999999999999999999999999999999999999999999999984 8899999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcC-CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~-p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~ 532 (791)
++.++.|+.+..++.+|+.|..++ |+||||||+|.|+|++..... ...++..+|+.+|+++....+++||++||+|..
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 999999999999999999999999 999999999999998766555 678999999999999998999999999999999
Q ss_pred hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCcc
Q 003859 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVY 612 (791)
Q Consensus 533 Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~ 612 (791)
||++++| |||+..+.+..|+..+|.+|++.+++.++.. +...+..+|..|.||+|+||.++|.+|...++++
T Consensus 333 ld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------ 404 (693)
T KOG0730|consen 333 LDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR------ 404 (693)
T ss_pred cChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------
Confidence 9999999 9999999999999999999999999999887 4444589999999999999999999999999885
Q ss_pred CCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhh
Q 003859 613 TSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (791)
Q Consensus 613 ~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~ 692 (791)
++++|..|+..+.|+..+...++.++++|++||||++...++.+.+.- |+++++.|.++|+.
T Consensus 405 ---------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~---p~~~pe~F~r~Gi~ 466 (693)
T KOG0730|consen 405 ---------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEW---PLKHPEKFARFGIS 466 (693)
T ss_pred ---------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhh---hhhchHHHHHhcCC
Confidence 667999999999999999999999999999999996666555555444 99999999999876
Q ss_pred ccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCch
Q 003859 693 SHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLE 764 (791)
Q Consensus 693 ~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid 764 (791)
++.|+|||||||||||++|+++|.. |+.++++.+...|. +.++++|.+|++.+||||||||||
T Consensus 467 ---------ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiD 537 (693)
T KOG0730|consen 467 ---------PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEID 537 (693)
T ss_pred ---------CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHH
Confidence 3559999999999999877777754 56678899988886 788999999999999999999999
Q ss_pred hhccccccccccccccccccccccc
Q 003859 765 EQRHQYSIYHSSIFGGRTHMNSLGL 789 (791)
Q Consensus 765 ~~a~~~~~~~~~~~~~~~~~~~~~~ 789 (791)
++|.+|++... |+..|..+.+|
T Consensus 538 si~~~R~g~~~---~v~~RVlsqLL 559 (693)
T KOG0730|consen 538 ALAGSRGGSSS---GVTDRVLSQLL 559 (693)
T ss_pred hHhhccCCCcc---chHHHHHHHHH
Confidence 99999984433 77777666544
No 3
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-53 Score=498.13 Aligned_cols=506 Identities=50% Similarity=0.718 Sum_probs=411.2
Q ss_pred CCCCccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCccccccccccccccccccccCCCCCcchHHHHhh
Q 003859 273 KGGSRVLKRHRLARAEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLEMHGTTAWGLNVAASGWGHQGDTLAALTS 352 (791)
Q Consensus 273 ~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (791)
+.+.++.++.+......+..+...+..-......|.++...+.++|...+.+......-.+....++++.+..+......
T Consensus 159 ~~~~~~~~r~~~~~~~~~~~s~~~~~~~p~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~ 238 (1080)
T KOG0732|consen 159 RTGRHPCRRANGCRSDSINDSDSRDHVPPGGRQLTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTK 238 (1080)
T ss_pred CCCCCcccccccccccccccccchhccCCCCchhhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcC
Confidence 44444444444333322333323333333333456899999999988655443333333334446778888777777777
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHH
Q 003859 353 GIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~lara 432 (791)
+.+..........+..|+.....++|++|+|++.++.+|+++|..||.||+.|..+++.+|+|||||||||||||+.|++
T Consensus 239 ~~~~~~~~~~~~~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~ara 318 (1080)
T KOG0732|consen 239 GLQTAGLRVQKEADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARA 318 (1080)
T ss_pred ccccchhhcccccccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHh
Confidence 77777777777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 433 LACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 433 lA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
+|..+.....++.|+...+++++++|+|+.++.++.+|+.|+..+|+|||+||||.|++.++..+++.+..++.+||.+|
T Consensus 319 La~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLm 398 (1080)
T KOG0732|consen 319 LAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM 398 (1080)
T ss_pred hhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH
Q 003859 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (791)
Q Consensus 513 ~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di 592 (791)
+++..++.|+||+|||+++.++++|+|||||++.++|++|+.+.|.+||..+...+...+...++..||..|.||.++||
T Consensus 399 dGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDl 478 (1080)
T KOG0732|consen 399 DGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADL 478 (1080)
T ss_pred cCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHH-HHHHHHHHH
Q 003859 593 KALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCL-QRHLQKAMN 671 (791)
Q Consensus 593 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggL-k~~l~~l~~ 671 (791)
++||.+|++.++++..++++.+.....++.+.+.|...||..|+..+.|+..+.......+++....+.| .......++
T Consensus 479 kaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq 558 (1080)
T KOG0732|consen 479 KALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQ 558 (1080)
T ss_pred HHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhh
Confidence 9999999999999999999999988888888888999999999999999999987777755554433333 111112222
Q ss_pred HHHhhcCCCCCcHHHHHhhhhccCC--CCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchhHHHH-----HHH-----
Q 003859 672 YISDIFPPLGMSSELTKLCMLSHGS--AIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI-----LLV----- 739 (791)
Q Consensus 672 ~l~~~~p~~~~~~~~~~~~~~~~g~--~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~-----~d~----- 739 (791)
.+-.++.-+.-.+....+.+....+ ..++.+++.+|+.|..|.|.+.+..+++..+-++.-..+. .|.
T Consensus 559 ~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~ 638 (1080)
T KOG0732|consen 559 GLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDL 638 (1080)
T ss_pred cchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccH
Confidence 1111111111122333333333444 7889999999999999999999999999988776433332 222
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCchhhcccccccccccc
Q 003859 740 FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIF 778 (791)
Q Consensus 740 ~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~ 778 (791)
...+-.+|.+|++..||||||-++|.++..........|
T Consensus 639 ~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s~~~~~ 677 (1080)
T KOG0732|consen 639 EEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVSFLEEF 677 (1080)
T ss_pred HHHHHHHHHHHhccCCceeeccchhhhhhcCcchhhhcc
Confidence 255566788999999999999999999998777655544
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-47 Score=461.12 Aligned_cols=382 Identities=35% Similarity=0.516 Sum_probs=323.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++|++|+|++.+++.|.+++..|+.++++|..+|+.++.++|||||||||||+||++||++++ ..|+.+++..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHH
Confidence 67899999999999999999999999999999999999999999999999999999999999984 6788999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
+.+.+.|.....++.+|..+....|+||||||||.+++.+..........++.+|+.+|+++...+.++||++||.++.|
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred HhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 99999999999999999999999999999999999998876555555678899999999998888899999999999999
Q ss_pred hhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccC
Q 003859 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~ 613 (791)
|+++++++||+..|.|+.|+.++|.+||+.++....+..+.. +..++..+.||++++|..+|..|+..++++.......
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~-l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVD-LDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999988876644444 4789999999999999999999999998875431111
Q ss_pred C--Cc-cccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhh
Q 003859 614 S--DD-KFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLC 690 (791)
Q Consensus 614 ~--~~-~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~ 690 (791)
. .. ....-.....++..||..|+..+.|+..+......+.+.|.+|+|+....+.+.+.+.. |+.++..|.+++
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~---~~~~~~~~~~~g 483 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEW---PLKHPEIFEKMG 483 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHh---hhhCHHHHHhcC
Confidence 1 00 00001234568999999999999999988888888999999999997777777666555 788888888876
Q ss_pred hhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH----cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeC
Q 003859 691 MLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY----MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVK 762 (791)
Q Consensus 691 ~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~----~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivflde 762 (791)
+. .+.|+|||||||||||++|++++..+ +.+..+.+...+. ..++.+|..|+..+||||||||
T Consensus 484 ~~---------~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 484 IR---------PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CC---------CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 53 35599999999999998777777653 2234444443332 5678899999999999999999
Q ss_pred chhhccccccc
Q 003859 763 LEEQRHQYSIY 773 (791)
Q Consensus 763 id~~a~~~~~~ 773 (791)
||++++.++..
T Consensus 555 id~l~~~r~~~ 565 (733)
T TIGR01243 555 IDAIAPARGAR 565 (733)
T ss_pred hhhhhccCCCC
Confidence 99999987643
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-48 Score=400.43 Aligned_cols=249 Identities=45% Similarity=0.743 Sum_probs=232.4
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...|.+++++|+|+++++++|++.|.+||++|++|..+|+.||+|||||||||||||+||+|+|++. ++.|+.+.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvv 217 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVV 217 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEec
Confidence 3458999999999999999999999999999999999999999999999999999999999999998 59999999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+++++.+|+|+....++.+|..|+.++||||||||||++..++... +....++.+-+||+.|+++...++|-||+||
T Consensus 218 gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence 9999999999999999999999999999999999999999988443 3334567888889999999999999999999
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|+++.|||||+|||||++.|+||+|+.+.|.+||+.|...+.+..+.++ +.||..|.|+||+||+++|.+|.+.|++..
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~-e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL-ELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH-HHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999999999999999999999999999888887 899999999999999999999999999975
Q ss_pred CCCccCCCccccccccccceeHHHHHHHhccccc
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
. ..||++||.+|+..+..
T Consensus 377 R----------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 R----------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred c----------------CeecHHHHHHHHHHHHh
Confidence 4 35999999999877654
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-46 Score=417.77 Aligned_cols=370 Identities=18% Similarity=0.212 Sum_probs=295.2
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~ 457 (791)
+-...+.+..+..+..++.- .+.+. ..++.....+||+|+||||||++++++|.+++ .+++.++|.++...
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg-----~h~~evdc~el~~~ 470 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELG-----LHLLEVDCYELVAE 470 (953)
T ss_pred cCCCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhC-----CceEeccHHHHhhc
Confidence 33455666666655554432 22222 12234456799999999999999999999995 88999999999998
Q ss_pred hHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHh---ccCCCCcEEEeccCCchhhhh
Q 003859 458 WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD---GLDSRGQVVLIGATNRVDAID 534 (791)
Q Consensus 458 ~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~---~~~~~~~vivIattn~~~~Ld 534 (791)
..+..+..+..+|..|+.+.|+||||-++|.|......+ ...+++..+-..+. ......+++||++|+..+.|+
T Consensus 471 s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg---ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp 547 (953)
T KOG0736|consen 471 SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG---EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLP 547 (953)
T ss_pred ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc---hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCC
Confidence 888899999999999999999999999999987543332 23333333333333 223567899999999999999
Q ss_pred hhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCcc--
Q 003859 535 GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVY-- 612 (791)
Q Consensus 535 ~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~-- 612 (791)
+.+++ -|.+.|.++.|+.++|.+||++++....+..++.. ..+|.+|.||+.+++..++..+...+..+......
T Consensus 548 ~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~-k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g 624 (953)
T KOG0736|consen 548 ADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNL-KQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAG 624 (953)
T ss_pred HHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHH-HHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccc
Confidence 99998 88889999999999999999999998776554444 78999999999999999988774433332221111
Q ss_pred --CCCccccccccccceeHHHHHHHhcccccccccCccccc-CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHh
Q 003859 613 --TSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHS-RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKL 689 (791)
Q Consensus 613 --~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~-~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~ 689 (791)
.......+......++++||.+++.+++......+..+. |+|.|+|||||+....++++.|+. |++++++|..
T Consensus 625 ~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql---PL~hpeLfss- 700 (953)
T KOG0736|consen 625 GLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL---PLKHPELFSS- 700 (953)
T ss_pred cchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC---cccChhhhhc-
Confidence 111122223345779999999999999988888888876 999999999999999999999999 9999987766
Q ss_pred hhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEe
Q 003859 690 CMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLV 761 (791)
Q Consensus 690 ~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfld 761 (791)
++++|+|||||||||||||++|++.|.. |+.+++|.|+.+|+ ++++++|.+|+..+|||||||
T Consensus 701 ---------glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 701 ---------GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred ---------cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 7888999999999999999777777765 56689999999997 899999999999999999999
Q ss_pred Cchhhccccccccc
Q 003859 762 KLEEQRHQYSIYHS 775 (791)
Q Consensus 762 eid~~a~~~~~~~~ 775 (791)
|+|++|+.|.-.+.
T Consensus 772 ELDSlAP~RG~sGD 785 (953)
T KOG0736|consen 772 ELDSLAPNRGRSGD 785 (953)
T ss_pred cccccCccCCCCCC
Confidence 99999999876554
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=410.69 Aligned_cols=287 Identities=39% Similarity=0.647 Sum_probs=255.1
Q ss_pred HHHhhccccCCCCCCCCCCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHH
Q 003859 348 AALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKT 427 (791)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT 427 (791)
..|...+...+|+.++ .-+...|.++|+||+|++++..+|..+|.+|+++|++|+.+|+..|.|||||||||||||
T Consensus 484 eDF~~Al~~iQPSakR----EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKT 559 (802)
T KOG0733|consen 484 EDFEEALSKIQPSAKR----EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKT 559 (802)
T ss_pred HHHHHHHHhcCcchhc----ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHH
Confidence 3445555566666543 233445899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHH
Q 003859 428 LIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVST 507 (791)
Q Consensus 428 ~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~ 507 (791)
+||+|+|++.+ .+|+.+.+.+++++|+|+++..++.+|..|+..+||||||||||+|++.++........+++++
T Consensus 560 LlAKAVANEag-----~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNq 634 (802)
T KOG0733|consen 560 LLAKAVANEAG-----ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQ 634 (802)
T ss_pred HHHHHHhhhcc-----CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHH
Confidence 99999999995 8999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcc
Q 003859 508 LLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV 585 (791)
Q Consensus 508 Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~--~~~~~~~~~~~~LA~~t~ 585 (791)
||..|+++..+..|.||++||+|+.||||++|||||+..++|++|+.++|..||+.++++ ..+..++++ +.||..+.
T Consensus 635 LLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl-~eia~~~~ 713 (802)
T KOG0733|consen 635 LLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDL-DEIARNTK 713 (802)
T ss_pred HHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCH-HHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999994 455555555 88998765
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccccc
Q 003859 586 --GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (791)
Q Consensus 586 --G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~ 644 (791)
||||+||..||++|...|+++....+.............+.+|..||..|++.++|+..
T Consensus 714 c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 714 CEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCcc
Confidence 99999999999999999999877655555444433344667899999999999998653
No 8
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=410.61 Aligned_cols=253 Identities=45% Similarity=0.732 Sum_probs=239.4
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
-..++++|++|+|++++|..|++.|.+|+++|+.|.++|+.+|+|||||||||||||++|++||++++ ++|+.+.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~-----~nFlsvk 500 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG-----MNFLSVK 500 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc-----CCeeecc
Confidence 34589999999999999999999999999999999999999999999999999999999999999994 8999999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+.+++++|+|+++..++.+|.+|+..+||||||||||+++..++....+...+++++||+.|+++....+|+|||+||+|
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRp 580 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRP 580 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCCh
Confidence 99999999999999999999999999999999999999999997766688999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+.||+||+|||||+..|+||+|+.+.|.+||+.+++++++..++++ ..||..|.||||+||.++|++|+..|+++...
T Consensus 581 d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl-~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~- 658 (693)
T KOG0730|consen 581 DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL-EELAQATEGYSGAEIVAVCQEAALLALRESIE- 658 (693)
T ss_pred hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH-HHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999999999999888665 89999999999999999999999999998643
Q ss_pred ccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
...|+..||.+|+...+++.
T Consensus 659 -------------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 659 -------------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred -------------cccccHHHHHHHHHhhcccC
Confidence 34689999999999888753
No 9
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-44 Score=394.13 Aligned_cols=357 Identities=19% Similarity=0.241 Sum_probs=290.3
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~ 458 (791)
.+++-...+++..-+....| +..+.+|||+||+|||||.||++++.++... ..+++..++|+.+-...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchh
Confidence 45666666666655533332 2345689999999999999999999999744 35667778888888777
Q ss_pred HhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch--hhhhHHHHHHHH-HHHhccC-CCCcEEEeccCCchhhhh
Q 003859 459 VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ--EQIHNSIVSTLL-ALMDGLD-SRGQVVLIGATNRVDAID 534 (791)
Q Consensus 459 ~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~--~~~~~~v~~~Ll-~~l~~~~-~~~~vivIattn~~~~Ld 534 (791)
+......++.+|..+.+++|+||+||++|.|++...... .......+..++ ..+..+. .+..+.||++.+....|+
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 888899999999999999999999999999998433222 222333344444 3333333 345579999999999999
Q ss_pred hhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCC
Q 003859 535 GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTS 614 (791)
Q Consensus 535 ~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~ 614 (791)
+.|.++++|+.++.++.|...+|.+||+..++........+.++.++..|.||.+.|+..++.+|...|+.....
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris----- 630 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS----- 630 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999988765556666677999999999999999999999999854321
Q ss_pred CccccccccccceeHHHHHHHhcccccccccCcccccCC-CccchHHHH---HHHHHHHHHHHHhhcCCCCCcHHHHHhh
Q 003859 615 DDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRP-LSLVVAPCL---QRHLQKAMNYISDIFPPLGMSSELTKLC 690 (791)
Q Consensus 615 ~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~-v~~~dIggL---k~~l~~l~~~l~~~~p~~~~~~~~~~~~ 690 (791)
.....+|.++|.++|..+.|.+++++.+..+. +.|.+|||| ++.+.++++| |.+|+..|.+.
T Consensus 631 -------~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~------P~kyp~if~~~- 696 (952)
T KOG0735|consen 631 -------NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW------PSKYPQIFANC- 696 (952)
T ss_pred -------cCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhc------cccchHHHhhC-
Confidence 12237999999999999999999999998855 999999999 5566666666 78888888775
Q ss_pred hhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeC
Q 003859 691 MLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVK 762 (791)
Q Consensus 691 ~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivflde 762 (791)
|++.+.|||||||||||||+||.+++.. +..+++|.+...++ +.++.+|.+|+..+|||+||||
T Consensus 697 --------plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDE 768 (952)
T KOG0735|consen 697 --------PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDE 768 (952)
T ss_pred --------CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEecc
Confidence 7888999999999999999877777765 45679999999997 8899999999999999999999
Q ss_pred chhhcccccccc
Q 003859 763 LEEQRHQYSIYH 774 (791)
Q Consensus 763 id~~a~~~~~~~ 774 (791)
+|++|+.|.-..
T Consensus 769 fdSiAPkRGhDs 780 (952)
T KOG0735|consen 769 FDSIAPKRGHDS 780 (952)
T ss_pred ccccCcccCCCC
Confidence 999999886443
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=387.46 Aligned_cols=285 Identities=35% Similarity=0.598 Sum_probs=247.0
Q ss_pred HHHHhhccccCCCCCCCCCCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChH
Q 003859 347 LAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGK 426 (791)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGK 426 (791)
+....+.+++..+.+.+... .|+++|+||+|++++|.+|.+.|..||++|++|.. |+.+..||||||||||||
T Consensus 646 f~kals~~~~~fs~aiGAPK------IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGK 718 (953)
T KOG0736|consen 646 FDKALSRLQKEFSDAIGAPK------IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGK 718 (953)
T ss_pred HHHHHHHHHHhhhhhcCCCC------CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCch
Confidence 33344445554444433322 28999999999999999999999999999999985 788889999999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc--hhhhhHHH
Q 003859 427 TLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK--QEQIHNSI 504 (791)
Q Consensus 427 T~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~--~~~~~~~v 504 (791)
|++|+|+|.++ .+.|+.+.+.+++++|+|+++++++.+|++|+..+||||||||+|.|+|+|+.. .++...++
T Consensus 719 TLlAKAVATEc-----sL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRV 793 (953)
T KOG0736|consen 719 TLLAKAVATEC-----SLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRV 793 (953)
T ss_pred HHHHHHHHhhc-----eeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHH
Confidence 99999999999 599999999999999999999999999999999999999999999999998653 45788999
Q ss_pred HHHHHHHHhccC--CCCcEEEeccCCchhhhhhhhcCCCCccccccCCCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 003859 505 VSTLLALMDGLD--SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP-GCEARAEILDIHTRKWKQPPSRELKSELA 581 (791)
Q Consensus 505 ~~~Ll~~l~~~~--~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~P-d~eer~~IL~~~l~~~~~~~~~~~~~~LA 581 (791)
+++||..|+++. ....|+||+|||+|+.|||+|+|||||+..+++.++ |.+.+..||+.+.+++.+..++++ .++|
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL-~eiA 872 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL-VEIA 872 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH-HHHH
Confidence 999999999997 567899999999999999999999999999999987 567789999999999999999988 5788
Q ss_pred HHc-cCCCHHHHHHHHHHHHHHHHHhhCCCccCCCc-cccccccccceeHHHHHHHhcccccccc
Q 003859 582 ASC-VGYCGADLKALCTEAAIRAFREKYPQVYTSDD-KFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (791)
Q Consensus 582 ~~t-~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~-~~~~~~~~~~lt~~df~~Al~~~~p~~~ 644 (791)
+.| ..|||+|+-+||..|++.|++|....+..... ....+...+.|+++||.+++.+++|+..
T Consensus 873 k~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 873 KKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred hhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 888 57999999999999999999987654443311 1123346788999999999999999754
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-41 Score=351.40 Aligned_cols=264 Identities=38% Similarity=0.625 Sum_probs=232.9
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
+.+|.+.|+||.|++++|+-|+++|.+|+.+|+.|+.+ ..|.++||++||||||||+||+|||.+++ ..||.++
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVS 277 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVS 277 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEec
Confidence 34578999999999999999999999999999999976 47789999999999999999999999995 8999999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchh-hhhHHHHHHHHHHHhccCCC----CcEEEec
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE-QIHNSIVSTLLALMDGLDSR----GQVVLIG 525 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~-~~~~~v~~~Ll~~l~~~~~~----~~vivIa 525 (791)
.+.+.++|.|++++.++-+|+.|+.++|++|||||||.|+..++..++ +.+.++.+.||..|+++... .-|+|+|
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999999999999999999999998866544 67889999999999998653 2388999
Q ss_pred cCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 003859 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605 (791)
Q Consensus 526 ttn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~ 605 (791)
+||.||.||.||+| ||...|+||+|+.+.|..+|+..+.......+..+ +.||..+.||||+||.++|++|.+.+++
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~-~~lae~~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNL-EDLAERSEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccH-HHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999887766665 8899999999999999999999999999
Q ss_pred hhCCCccCCCccccc-cccccceeHHHHHHHhccccccc
Q 003859 606 EKYPQVYTSDDKFLI-DVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 606 ~~~~~~~~~~~~~~~-~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
+....+......... ......++..||+.|+..+.|+.
T Consensus 435 R~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 435 RKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred HHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 866544333222111 12235699999999999998864
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=358.02 Aligned_cols=229 Identities=38% Similarity=0.627 Sum_probs=218.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+++|+||-|++++|++|.++|.+ |+.|..|.++|-.-|+||||+||||||||+||||+|.+.+ |+||...+++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSE 372 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSE 372 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccc
Confidence 478999999999999999999988 9999999999999999999999999999999999999984 9999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
|-..|+|....+++.+|..|+..+||||||||||++.+++........++.+++||..|+++..+..||||++||.|+.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999999998887778899999999999999999999999999999999
Q ss_pred hhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
|++|.|||||+.+|.||.||...|.+||+.|+.+....-+++. ..||.-|.||+|+||.+|++.|+..|......
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~-~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~ 527 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP-KIIARGTPGFSGADLANLVNQAALKAAVDGAE 527 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH-hHhccCCCCCchHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999888766665 67999999999999999999999999887544
No 13
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-41 Score=361.14 Aligned_cols=370 Identities=26% Similarity=0.390 Sum_probs=279.2
Q ss_pred ccCCCCCCCc--cCCcHHHHHHHHH-HHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 371 QVDESVSFDD--IGGLSEYIDALKE-MVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 371 ~~~~~~~~~~--l~G~e~~k~~L~~-~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
-..|...|.+ |+|++.....+.. ++..-+--|++..++|+..-+|||||||||||||++||.|...|...-. -
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP----K 286 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP----K 286 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC----c
Confidence 3457788887 7999988877654 5555456689999999999999999999999999999999999964432 3
Q ss_pred EEechhhhhhhHhHHHHHHHHHHHHHHhcC--------CeEEEEeCCCccCCCCCCc--hhhhhHHHHHHHHHHHhccCC
Q 003859 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQ--------PSIIFFDEIDGLAPVRSSK--QEQIHNSIVSTLLALMDGLDS 517 (791)
Q Consensus 448 ~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~--------p~VL~IDEiD~L~~~~~~~--~~~~~~~v~~~Ll~~l~~~~~ 517 (791)
.+++.+++++|+|+++.+++.+|..|.... =.||++||||++|..+++. +.+.+..++++||.-|++...
T Consensus 287 IVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq 366 (744)
T KOG0741|consen 287 IVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ 366 (744)
T ss_pred ccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh
Confidence 468999999999999999999999886422 2599999999999888653 346889999999999999999
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCCCHHHHH
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYCGADLK 593 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~----~~~~~~~~~~~LA~~t~G~s~~di~ 593 (791)
-++|+||+-||+.+.||.||+|||||...+++.+||+..|.+||+.|.+.+ .+..++++ .+||..|..|||++|.
T Consensus 367 LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl-~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 367 LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDL-KELAALTKNFSGAELE 445 (744)
T ss_pred hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCH-HHHHHHhcCCchhHHH
Confidence 999999999999999999999999999999999999999999999998775 33445555 8999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccccccCccccc-----CCCccchHHHHHHHHHH
Q 003859 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHS-----RPLSLVVAPCLQRHLQK 668 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~-----~~v~~~dIggLk~~l~~ 668 (791)
.|++.|...|+.+....- ..........+.+.|++.||..||..++|+.-.+-.--. -.+.|..- ..+.+..
T Consensus 446 glVksA~S~A~nR~vk~~-~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~--v~~il~~ 522 (744)
T KOG0741|consen 446 GLVKSAQSFAMNRHVKAG-GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP--VTRILDD 522 (744)
T ss_pred HHHHHHHHHHHHhhhccC-cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc--HHHHHhh
Confidence 999999999998876433 112223344577899999999999999997632221000 01122110 0111111
Q ss_pred HHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCC-cEEEecCCCCChhHHHHHHHHHHcCchhHHH--HHHH------
Q 003859 669 AMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRP-RLLLCGSEGTGVFNRIILGLQFYMNWRNFLF--ILLV------ 739 (791)
Q Consensus 669 l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~-g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l--~~d~------ 739 (791)
-.-.+++ +. .+-+.+- .+||.||||+|||.||+.+|.. .++.+.-+ ..+|
T Consensus 523 G~llv~q-------------vk-------~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~-S~FPFvKiiSpe~miG~sEs 581 (744)
T KOG0741|consen 523 GKLLVQQ-------------VK-------NSERSPLVSVLLEGPPGSGKTALAAKIALS-SDFPFVKIISPEDMIGLSES 581 (744)
T ss_pred HHHHHHH-------------hh-------ccccCcceEEEEecCCCCChHHHHHHHHhh-cCCCeEEEeChHHccCccHH
Confidence 1111111 10 0111122 7999999999999777666653 22111111 1233
Q ss_pred --HHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 740 --FQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 740 --~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
+.++.++|..|++..-+||++|+|+.|-.=
T Consensus 582 aKc~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 582 AKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred HHHHHHHHHHHHhhcCcceEEEEcchhhhhcc
Confidence 366788999999999999999999998653
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=307.36 Aligned_cols=245 Identities=39% Similarity=0.679 Sum_probs=224.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
|..+++-|+|++.+++++++.|.+|.++|++|..+|+..|+|+|||||||||||+||+++|+.. .+.|+.+++++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgse 216 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSE 216 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHH
Confidence 5667788999999999999999999999999999999999999999999999999999999987 59999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+..+|+|+....++.+|-.|+.++|+|||+||||.+...+...+ ....++.+-.||+.++++....++-||++||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 99999999999999999999999999999999999988774432 233456777788889999999999999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+-||++|+||||+++.|+||+|+.+.|.+||+.+...+.+.-..++ ..+|....|.||+++..+|.+|.+.|+++..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l-~kiaekm~gasgaevk~vcteagm~alrerr-- 373 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL-RKIAEKMPGASGAEVKGVCTEAGMYALRERR-- 373 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-HHHHHhCCCCccchhhhhhhhhhHHHHHHhh--
Confidence 9999999999999999999999999999999999999887766665 7899999999999999999999999998753
Q ss_pred ccCCCccccccccccceeHHHHHHHhcccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
+.+|++||+.|+...-
T Consensus 374 --------------vhvtqedfemav~kvm 389 (404)
T KOG0728|consen 374 --------------VHVTQEDFEMAVAKVM 389 (404)
T ss_pred --------------ccccHHHHHHHHHHHH
Confidence 4699999999987643
No 15
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=320.44 Aligned_cols=228 Identities=37% Similarity=0.660 Sum_probs=215.7
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.+.|++|.|++.+|+.|+++|.+|+++|.+|.... .|.++|||||||||||++||+|+|.+. +..|+.++.
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEA-----nSTFFSvSS 199 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSS 199 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhc-----CCceEEeeh
Confidence 34899999999999999999999999999999998643 667899999999999999999999998 478999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-CCcEEEeccCCch
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRV 530 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~-~~~vivIattn~~ 530 (791)
++++++|.|++++.++++|+.|+.+.|+||||||||.|++.++.+.....+++...||..|+++-. ...|+|+++||.|
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999999999999889999999999999998754 5689999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|.||.+++| ||...|++|+|+...|..+++.++......++...+..|+..|+||||+||.-+++.|.+..++..
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 999999999 999999999999999999999999999999998888999999999999999999999999998864
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=304.90 Aligned_cols=247 Identities=39% Similarity=0.626 Sum_probs=226.6
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.+++.+|+|++-+|+++++.+.+||.+.++|.++|+.||+|||||||||||||+||+++|+.. ...|+.+.+
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvg 222 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVG 222 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeecc
Confidence 347899999999999999999999999999999999999999999999999999999999999987 478999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
++|..+|.|+....++.+|..|+.++|+||||||+|+++.++-.. .....++++-.||+.|+++....+|-||++||
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 999999999999999999999999999999999999999877433 33345678888899999999999999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
+.+.|||+|+||||+++.|+||+|+..+++-++..++.++.+..+.++ +.+..+-+..|+++|.++|++|.+.|++.+
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl-e~~v~rpdkis~adi~aicqeagm~avr~n- 380 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL-EDLVARPDKISGADINAICQEAGMLAVREN- 380 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH-HHHhcCccccchhhHHHHHHHHhHHHHHhc-
Confidence 999999999999999999999999999999999999999998887776 778888899999999999999999999974
Q ss_pred CCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
...|...||+++.....
T Consensus 381 ---------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ---------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ---------------ceeeeHHHHHHHHHhhc
Confidence 34688999999876543
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=352.90 Aligned_cols=245 Identities=39% Similarity=0.630 Sum_probs=224.7
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
...++|.||+|++++|++|.++|.+ |++|+.|.++|...|+|+||+||||||||+||+|+|.+.+ ++|+.++++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS 378 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS 378 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH
Confidence 3569999999999999999999988 9999999999999999999999999999999999999994 999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCC----chhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS----KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~----~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+|+..++|....+++.+|..|+.++||||||||||++...+.. .........+++||..|+++.....||||++||
T Consensus 379 EFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 379 EFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred HHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC
Confidence 9999999999999999999999999999999999999988741 334556789999999999999999999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
+++.||++|+|||||++.|.++.|+..+|.+|++.|+.......+...+..||.+|.||+|+||.++|++|+..|.++..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988875555556799999999999999999999999999765
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
. .|+..||..|+.+.
T Consensus 539 ~----------------~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 539 R----------------EIGTKDLEYAIERV 553 (774)
T ss_pred C----------------ccchhhHHHHHHHH
Confidence 4 36777777777643
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-38 Score=316.30 Aligned_cols=246 Identities=39% Similarity=0.674 Sum_probs=223.4
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.-++.+|+|++.++++|++.+.+||.+|++|..+|+.+|+||+|||+||||||+||+|+|+... ..|+.+-+
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS-----ATFlRvvG 252 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS-----ATFLRVVG 252 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc-----hhhhhhhh
Confidence 3477899999999999999999999999999999999999999999999999999999999999884 78888899
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCC---chhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS---KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~---~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
++++.+|.|+..+.++++|..|..++|+|+||||||++..++-. ++....++.+-.||+.++++.+++.|-||++||
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATn 332 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 332 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecc
Confidence 99999999999999999999999999999999999999887732 333344566667888889999999999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
..+.|||+|.||||+++.|.|+.||...+..||..|...+.+.-++.+ +.|...-+.+|++||.++|.+|.+.|++...
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl-e~li~~kddlSGAdIkAictEaGllAlRerR 411 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL-EELIMTKDDLSGADIKAICTEAGLLALRERR 411 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH-HHHhhcccccccccHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999888766665 7788888899999999999999999999754
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..++++||.+|...+
T Consensus 412 ----------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 ----------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------------hhccHHHHHHHHHHH
Confidence 368999999987654
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=305.83 Aligned_cols=247 Identities=37% Similarity=0.633 Sum_probs=226.0
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.-.+.+|+|++.++++|.++|.+|+.+++.|.++|+.+|+|+|+|||||||||++|+++|.+. +..|+.+-+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT-----~aTFLKLAg 238 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT-----NATFLKLAG 238 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc-----cchHHHhcc
Confidence 346778999999999999999999999999999999999999999999999999999999999987 478888889
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..++..|+|...+.++..|..|+..+|+||||||+|++..++.... ....++.+-.||+.++++.+...|-||++||
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 9999999999999999999999999999999999999988774432 2335567778888999999999999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
+.+-|||+|+|.||+++.|+||.|+.+.|..|++.|..++....++.+ ++||..|++|+|++..++|-+|.+.|+++..
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-eELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-EELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-HHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 999999999999999999999999999999999999999999888887 8999999999999999999999999999864
Q ss_pred CCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
. .|+.+||..++.+++
T Consensus 398 t----------------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 398 T----------------EVTHEDFMEGILEVQ 413 (424)
T ss_pred c----------------cccHHHHHHHHHHHH
Confidence 3 488999998886654
No 20
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=337.03 Aligned_cols=230 Identities=38% Similarity=0.652 Sum_probs=219.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
..+.|++|+|+.++++.|.+++.+|.+||.+|.+.+++.+.|||||||||||||+||-++|..+ ++.|+.+.+.+
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPE 736 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPE 736 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHH
Confidence 4589999999999999999999999999999999999999999999999999999999999988 59999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
++++|+|.+++.++.+|.+|+..+||||||||+|.++|+++....+...+++++||..|++...-..|+|+|+|.+|+.|
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
||||+||||+++.|+.+.|+..+|.+||+.+...+....+.++ +.+|..|+||||+||..|+..|.+.|+.+...
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl-~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL-ECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch-HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777766665 89999999999999999999999999887543
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=303.03 Aligned_cols=249 Identities=38% Similarity=0.676 Sum_probs=224.9
Q ss_pred cccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 370 ~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
+...|.++..+|+|..++++.|++.+..||.+|+.|..+|+.+|+|||||||||||||++|+++|+.. ...|+.+
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirv 242 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRV 242 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEee
Confidence 34558899999999999999999999999999999999999999999999999999999999999987 4788999
Q ss_pred echhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
-+++++.+|+|+....++.+|+.|+....|||||||||++.+.+-.. +....++.+-.|++.|+++..++++-|+++
T Consensus 243 igselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 243 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 99999999999999999999999999999999999999999887433 223345666777788899999999999999
Q ss_pred CCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 527 tn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
||+|+.|||+|+||||+++.++|.+|+.+.|..||+.|.+.+...-+..+ +-||..|..-++++|+.+|.+|.+.|++.
T Consensus 323 tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~-ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 323 TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRF-ELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhH-HHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999888777766 77999999999999999999999999886
Q ss_pred hCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
... ..|..||..|+..+.
T Consensus 402 rrk----------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 402 RRK----------------VATEKDFLDAVNKVV 419 (435)
T ss_pred Hhh----------------hhhHHHHHHHHHHHH
Confidence 432 478889988876543
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.3e-36 Score=298.91 Aligned_cols=241 Identities=35% Similarity=0.568 Sum_probs=216.5
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++++|..++-++.+ |.+|+.|..| .|++||||||||||||++|++||+++ +++++.+.+.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat 185 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKAT 185 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhccc-----CCceEEechH
Confidence 3689999999999999999887776 8999999987 47899999999999999999999998 5999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch-hhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~-~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~ 531 (791)
.+++.++|.....++.+++.|+..+|||+||||+|+|+-.+.-+. .+....+++.||..|+++..+..|+.|++||+|+
T Consensus 186 ~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 186 ELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE 265 (368)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh
Confidence 999999999999999999999999999999999999986553221 2345689999999999999999999999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHH-HHHHHHHHHHHhhCCC
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA-LCTEAAIRAFREKYPQ 610 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~-l~~~A~~~a~~~~~~~ 610 (791)
.||+++++ ||...|+|.+|+.++|..||+.+++.+++..+..+ ..++++|.|||++||.. +++.|.+.|+.....
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~-~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e- 341 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADL-RYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE- 341 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh-
Confidence 99999999 99999999999999999999999999999888874 89999999999999974 678888888886432
Q ss_pred ccCCCccccccccccceeHHHHHHHhccccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
.|+.+||+.|+.+..+
T Consensus 342 ---------------~v~~edie~al~k~r~ 357 (368)
T COG1223 342 ---------------KVEREDIEKALKKERK 357 (368)
T ss_pred ---------------hhhHHHHHHHHHhhcc
Confidence 4899999999986443
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=328.63 Aligned_cols=248 Identities=37% Similarity=0.619 Sum_probs=223.1
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.++|++|+|++.+++.|++++.+|+.++++|..+|+.+|+++|||||||||||++|+++|+.+. ..|+.+.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~ 212 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVG 212 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEeh
Confidence 4588999999999999999999999999999999999999999999999999999999999999884 67888889
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...|+|+....++.+|..|....|+||||||+|.++..+.... .....+++..|+..|+++....+++||+|||
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN 292 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 292 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999987653221 2234567888889999887778899999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.++.||++++|+|||+..|+|++|+.++|..||+.++..+.+..+.++ ..+|..|.|||++||.++|.+|.+.|+++..
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~-~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~ 371 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL-EDFVSRPEKISAADIAAICQEAGMQAVRKNR 371 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998887766665 7899999999999999999999999998743
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
..|+.+||..|+.....
T Consensus 372 ----------------~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 372 ----------------YVILPKDFEKGYKTVVR 388 (398)
T ss_pred ----------------CccCHHHHHHHHHHHHh
Confidence 25999999999987643
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-35 Score=335.82 Aligned_cols=347 Identities=39% Similarity=0.556 Sum_probs=293.5
Q ss_pred cccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc
Q 003859 397 FPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN 476 (791)
Q Consensus 397 ~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~ 476 (791)
.++..++.|..+++.++.+++++||||+|||++++++|.. . ..++.+++...+.++.+.....++.+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G-----AEFLSINGPEILSKYVGESELRLRELFEEAEKL 75 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c-----CcccccCcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999998 1 233778889999999999999999999999999
Q ss_pred CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHH
Q 003859 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~ee 556 (791)
.|+++++|+++.+++.+..........+..+|+..++++. ...+++++.+|.+..++++++++++|...+.+..|+...
T Consensus 76 ~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 76 APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred CCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 9999999999999998877666678899999999999988 444899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHh
Q 003859 557 RAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (791)
Q Consensus 557 r~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al 636 (791)
+.+|+..+...+....+.. ...++..+.||+++++..+|..+...++.+.. ........++..+|..++
T Consensus 155 ~~ei~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~----------~~~~~~~~~~~~~~~~~l 223 (494)
T COG0464 155 RLEILQIHTRLMFLGPPGT-GKTLAARTVGKSGADLGALAKEAALRELRRAI----------DLVGEYIGVTEDDFEEAL 223 (494)
T ss_pred HHHHHHHHHhcCCCccccc-HHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh----------ccCcccccccHHHHHHHH
Confidence 9999999988876655333 47899999999999999999999999988753 011234568999999999
Q ss_pred cccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCCh
Q 003859 637 STITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGV 716 (791)
Q Consensus 637 ~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGK 716 (791)
..+.++ +.+....+.+.|.+++||....+.+.+.+.. |+.+++.|.+.++ +.+.|+||||||||||
T Consensus 224 ~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~---~~~~~e~~~~~~~---------~~~~giLl~GpPGtGK 289 (494)
T COG0464 224 KKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIET---PLKRPELFRKLGL---------RPPKGVLLYGPPGTGK 289 (494)
T ss_pred HhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHh---HhhChHHHHhcCC---------CCCCeeEEECCCCCCH
Confidence 999988 6777778999999999996666666665555 7888888777544 3455999999999999
Q ss_pred hHHHHHHHHH----HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccccc
Q 003859 717 FNRIILGLQF----YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHS 775 (791)
Q Consensus 717 T~la~~~~~~----~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~ 775 (791)
|++|++++.. ++.+..+.+...++ .+++++|..|++.+||||||||+|++|..++....
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~ 356 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED 356 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc
Confidence 9777777662 34455565554443 88999999999999999999999999998886654
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.4e-34 Score=320.74 Aligned_cols=254 Identities=44% Similarity=0.721 Sum_probs=224.6
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...+.++|++|+|++++++.|.+++..|+.++++|..+|+.+|++||||||||||||++|+++|++++ ..|+.++
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~ 197 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVV 197 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999984 6788899
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchh---hhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE---QIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~---~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+..+...|.|.....++.+|..+....|+||||||+|.|++.+..... ....+.+..|+..++++...++++||+||
T Consensus 198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence 999999999999999999999999999999999999999876643321 22345666777778877777899999999
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|.++.++++|+|||||+..|+|++|+.++|.+||+.++....+..+.++ ..||..|.||+++||.++|.+|.+.|+++.
T Consensus 278 n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~-~~la~~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 278 NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL-EELAELTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999998776655454 789999999999999999999999998864
Q ss_pred CCCccCCCccccccccccceeHHHHHHHhcccccccccC
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRG 646 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~ 646 (791)
. ..|+.+||..|+..+.+.....
T Consensus 357 ~----------------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 R----------------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred C----------------CCcCHHHHHHHHHHHhcccccc
Confidence 2 2489999999999988765544
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=303.85 Aligned_cols=228 Identities=44% Similarity=0.712 Sum_probs=212.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
-.++|++|+|++.++++|++.|.+|+.+|++|...+ +.++.|||||||||||||+||+++|.+.+ ..|+.+..+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag-----a~fInv~~s 161 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG-----ANFINVSVS 161 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC-----CCcceeecc
Confidence 478999999999999999999999999999997544 47889999999999999999999999996 778888889
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc--EEEeccCCch
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ--VVLIGATNRV 530 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~--vivIattn~~ 530 (791)
.+.++|+|+.++.++.+|..|...+||||||||+|.+++.++..+.+....+.++|+...+++.+..+ |+|+||||+|
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999988777778888999999999999987655 9999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
..||.+++| |+.+.++|+.|+..+|.+||+.+++...+..+.++ ..+|..|.||||.||.++|..|+...++....
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~-~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDL-DEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCH-HHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 999999999 99999999999999999999999999888877776 79999999999999999999999999987653
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-34 Score=330.85 Aligned_cols=252 Identities=46% Similarity=0.744 Sum_probs=231.8
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|.+++|++.+++.+++.+.+|+.+++.|...++.++.++|||||||||||+||+++|.++ +.+|+.+.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~ 309 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKG 309 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeC
Confidence 447899999999999999999999999999999999999999999999999999999999999987 489999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~ 531 (791)
++++++|+|++++.++.+|..|+..+||||||||+|.+++.++........+++++|+.+|+++.....|+||+|||.|+
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999998877665555799999999999999999999999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP-PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~-~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
.+|++++|+|||+..|+|++|+..+|.+||+.++...... ...-.+..++..|.||+++||..+|.+|++.++++..
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-- 467 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-- 467 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999999999999999999999999999999976553 3334458899999999999999999999999999753
Q ss_pred ccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
...|++.||..|+....|+.
T Consensus 468 -------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 468 -------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred -------------cCCccHHHHHHHHHhcCCCC
Confidence 23589999999999987763
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.4e-34 Score=344.49 Aligned_cols=265 Identities=44% Similarity=0.733 Sum_probs=232.4
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++.+++.|.+.+.+|+.++++|..+|+.++.++|||||||||||++|++||++++ .+|+.++++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-----~~fi~v~~~ 521 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGP 521 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehH
Confidence 367899999999999999999999999999999999999999999999999999999999999984 789999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc-hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK-QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~-~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~ 531 (791)
+++++|+|+++..++.+|..|+...||||||||+|.|++.++.. ......+++++|+..|+++....+++||+|||.++
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 99999999999999999999999999999999999999877543 23456789999999999988888999999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
.||++++|||||+..|+|++|+.++|.+||+.++.+..+..+.++ ..||..|.|||++||.++|++|+..|+++.....
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l-~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~ 680 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL-EELAEMTEGYTGADIEAVCREAAMAALRESIGSP 680 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999988777655554 7899999999999999999999999998754322
Q ss_pred cCCCc-c-ccccccccceeHHHHHHHhccccccc
Q 003859 612 YTSDD-K-FLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 612 ~~~~~-~-~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
..... . .........|+..||..|+..++|+.
T Consensus 681 ~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 681 AKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred cchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 11000 0 00011245799999999999988864
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-34 Score=324.78 Aligned_cols=244 Identities=38% Similarity=0.620 Sum_probs=223.5
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
..++|.|+.|.+++|++|.++|.. |+.|..|..+|...|+|+||+||||||||+||+++|.++ .++|+.+++++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~ 218 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSD 218 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchh
Confidence 578999999999999999999988 999999999999999999999999999999999999998 59999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
|+..++|.....++.+|..|+.++||||||||||++...+..+ +.....+.+++||..|+++..+..|+||++||+|
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp 298 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP 298 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc
Confidence 9999999999999999999999999999999999998877433 3344567999999999999988999999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+-+|+||+|||||++.|.++.||...|.+||+.|+.+..+..++++ ..+|..|.||+++++.+++++|+..|.++...
T Consensus 299 dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl-~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~- 376 (596)
T COG0465 299 DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL-KKIARGTPGFSGADLANLLNEAALLAARRNKK- 376 (596)
T ss_pred ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH-HHHhhhCCCcccchHhhhHHHHHHHHHHhcCe-
Confidence 9999999999999999999999999999999999999988877776 56999999999999999999999999998654
Q ss_pred ccCCCccccccccccceeHHHHHHHhcccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
.|++.||..|+..+.
T Consensus 377 ---------------~i~~~~i~ea~drv~ 391 (596)
T COG0465 377 ---------------EITMRDIEEAIDRVI 391 (596)
T ss_pred ---------------eEeccchHHHHHHHh
Confidence 366667776665543
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=316.44 Aligned_cols=247 Identities=40% Similarity=0.677 Sum_probs=219.6
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.++|++|+|++.+++.|.+++.+|+.++++|..+|+.++.++|||||||||||++|++||+++. ..|+.+.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~fi~V~~ 250 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATFLRVVG 250 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCEEEEec
Confidence 3477899999999999999999999999999999999999999999999999999999999999984 56788888
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...|.|.....++.+|..|..+.|+||||||||.++..+... ......+.+..|+..|+++.....+.||+|||
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN 330 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC
Confidence 999999999999999999999999999999999999998765432 22233456677888888877778899999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.++.||++++|+|||+..|+|++|+.++|.+||+.++..+.+..+.++ ..++..+.||+++||.++|.+|...|+++..
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl-~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL-EEFIMAKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998877655554 7899999999999999999999999998753
Q ss_pred CCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
..|+.+||..|+..+.
T Consensus 410 ----------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 410 ----------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred ----------------CccCHHHHHHHHHHHH
Confidence 2589999999988764
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.8e-33 Score=316.83 Aligned_cols=244 Identities=27% Similarity=0.421 Sum_probs=212.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+..+|++|+|++.+|+.|.+.... +...+..+|+.+|+|||||||||||||++|++||++++ ++|+.+++..
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~~~l~~~~ 294 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPLLRLDVGK 294 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEEhHH
Confidence 577899999999999999876543 34456678999999999999999999999999999984 7889999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCC-CchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS-SKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~-~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~ 532 (791)
+.+.|+|+.+..++.+|..|...+||||||||||.++.... ........+++..|+.+|+. ...+|+||+|||.++.
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDL 372 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhh
Confidence 99999999999999999999999999999999999987533 23445677899999999984 4568999999999999
Q ss_pred hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP-PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 533 Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~-~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
||++++|+|||+..|+|+.|+.++|.+||+.++...... .....+..||..|.||||+||.++|.+|+..|+.+..
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~--- 449 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR--- 449 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 999999999999999999999999999999999886533 2233458999999999999999999999999987542
Q ss_pred cCCCccccccccccceeHHHHHHHhcccccccc
Q 003859 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (791)
Q Consensus 612 ~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~ 644 (791)
.++.+||..|+..+.|.+.
T Consensus 450 --------------~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 450 --------------EFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred --------------CcCHHHHHHHHHhcCCCcc
Confidence 3899999999999998653
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.1e-32 Score=304.73 Aligned_cols=227 Identities=38% Similarity=0.664 Sum_probs=190.7
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEE
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSF 446 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~ 446 (791)
..|.++|++|+|++.+++.|++.|..|+.++++|..+|+.+|+++|||||||||||++|+++|+++.... ....|
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 4478999999999999999999999999999999999999999999999999999999999999986542 24567
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCc-hhhhhHHHHHHHHHHHhccCCCCcE
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSK-QEQIHNSIVSTLLALMDGLDSRGQV 521 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~-~~~~~~~v~~~Ll~~l~~~~~~~~v 521 (791)
+.+.+..++.+|+|+.+..++.+|..+... .||||||||+|.++..++.+ .......++.+|+..|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 788888999999999999999999988763 69999999999999876543 2344567889999999999888899
Q ss_pred EEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 003859 522 VLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 522 ivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~ 601 (791)
+||+|||.++.||++|+|||||+..|+|++|+.++|.+||+.++... +..+.+ +..+.|++++++..+|++|..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~-----l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDAD-----LAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHH-----HHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998652 111211 223456666666666666544
Q ss_pred HHH
Q 003859 602 RAF 604 (791)
Q Consensus 602 ~a~ 604 (791)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 433
No 33
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6e-32 Score=311.44 Aligned_cols=246 Identities=39% Similarity=0.632 Sum_probs=218.9
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++.+++.|.+++.. +.+++.|..+|...++++|||||||||||++|++||.+++ ++|+.+++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~ 122 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGS 122 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCeeeccHH
Confidence 4789999999999999999998887 8899999999999999999999999999999999999884 788999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
.+...+.+.....++.+|..+....||||||||||.++..++.. .......+++.|+..|+++.....++||+|||.
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998776542 123345788999999999888889999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
++.||++|+|||||+..|+|+.|+.++|.+||+.++.......+.+ +..+|..|.||+++||.++|++|+..|.++..
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~-l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~- 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD-LKAVARRTPGFSGADLANLLNEAALLAARKNK- 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999998876654444 47899999999999999999999988877542
Q ss_pred CccCCCccccccccccceeHHHHHHHhccccc
Q 003859 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 610 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
..|+.+||..|+.....
T Consensus 281 ---------------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 281 ---------------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred ---------------CCCCHHHHHHHHHHHhc
Confidence 24899999999987654
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=1.8e-31 Score=296.26 Aligned_cols=246 Identities=46% Similarity=0.729 Sum_probs=215.3
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|++|+|++++++.|.+++..|+.++++|..+|+.+|.++|||||||||||++|+++|+.+. ..|+.+.+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~~~v~~ 189 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVG 189 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCEEecch
Confidence 4478999999999999999999999999999999999999999999999999999999999999884 56777888
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...+++.....++.+|..+....|+||||||+|.++..+.... .......+..++..++++...+++.||+|||
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 8888899999999999999999999999999999999986653322 1223456667777777776677899999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.++.+++++++++||+..|+|+.|+.++|.+||+.++....+..+.+ +..||..|.||+++||.++|.+|.+.|+++..
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~-~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~ 348 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD-LEAIAKMTEGASGADLKAICTEAGMFAIREER 348 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998877654444 47899999999999999999999999988643
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..|+.+||..|+..+
T Consensus 349 ----------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 349 ----------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred ----------------CccCHHHHHHHHHHh
Confidence 258999999998653
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=6.7e-31 Score=306.19 Aligned_cols=244 Identities=39% Similarity=0.642 Sum_probs=215.2
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
...++|++|+|++++++.|.+++.. ++.+..|..+|...+.+|||+||||||||+||++||.+++ ++|+.+++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-----~p~i~is~s 250 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-----VPFFSISGS 250 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeeeccHH
Confidence 3578999999999999999998877 8889999999999999999999999999999999999884 788999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
.+...+.+.....++.+|..|....||||||||||.++..++.. .......++++|+..|+++.....++||++||.
T Consensus 251 ~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 251 EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc
Confidence 99888888888899999999999999999999999998665322 223456788899999998888889999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
++.+|++|+|||||+..|.|++|+.++|.+||+.++.......+. .+..||..|.||+++||.++|++|+..|.++..
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~-~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~- 408 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDV-SLELIARRTPGFSGADLANLLNEAAILTARRKK- 408 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999999999999999999885554444 457899999999999999999999988877643
Q ss_pred CccCCCccccccccccceeHHHHHHHhccc
Q 003859 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 610 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..|+.+||..|+..+
T Consensus 409 ---------------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------------CCcCHHHHHHHHHHH
Confidence 248888999988765
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-31 Score=287.09 Aligned_cols=260 Identities=38% Similarity=0.592 Sum_probs=228.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.+.|++++|++.+++.+.+++.+|+..+.+|..+. .++.++||.||||+|||+|+++||.+++ +.|+.++++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~-----atff~iSass 221 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG-----ATFFNISASS 221 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc-----ceEeeccHHH
Confidence 678999999999999999999999999999999764 5678999999999999999999999994 8999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC--CCcEEEeccCCchh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRVD 531 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~--~~~vivIattn~~~ 531 (791)
+.++|+|+.+..++.+|..|+..+|+|+||||+|.++.++.........++..+++..+.+... .++|+||+|||.||
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 9999999999999999999999999999999999999999777777788899999888877654 46899999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
.+|.+++| ||...++||+|+.+.|..||..++......+....+..||..|+||++.||.++|.+|++..++......
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 99999999 9999999999999999999999999987777777779999999999999999999999988877654310
Q ss_pred cCCCccccccccccceeHHHHHHHhcccccccc
Q 003859 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (791)
Q Consensus 612 ~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~ 644 (791)
............++..||..++..+.+...
T Consensus 380 ---~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 380 ---DLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred ---hhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 000011123345788899999988887654
No 37
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=272.75 Aligned_cols=244 Identities=38% Similarity=0.619 Sum_probs=213.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
..++|+.|+|+-.++.++.+.|..||..|++|..+|+.+|.++|||||||+|||++|+++|..++ ++|+.+..+.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg-----~nfl~v~ss~ 201 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG-----VNFLKVVSSA 201 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC-----CceEEeeHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999995 8999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchh---hhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE---QIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~---~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+..+|.|+..+.++..|..|+...|||||+||||++.+.+..... ...++.+-.|++.|+++...++|-+|+|||+|
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP 281 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc
Confidence 999999999999999999999999999999999999987744333 23344555555666677778899999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+.|+|+|+||||+++.+++|.|+...|..|++.+.......-..+ .+.+.+.++||.++++.+.|.+|-+.|++...
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid-~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-- 358 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID-DEAILKLVDGFNGADLRNVCTEAGMFAIPEER-- 358 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc-HHHHHHHHhccChHHHhhhcccccccccchhh--
Confidence 999999999999999999999999999999998887765443333 37889999999999999999999988877532
Q ss_pred ccCCCccccccccccceeHHHHHHHhccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..+.+++|..++...
T Consensus 359 --------------~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 --------------DEVLHEDFMKLVRKQ 373 (388)
T ss_pred --------------HHHhHHHHHHHHHHH
Confidence 246778888877554
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-30 Score=295.63 Aligned_cols=363 Identities=20% Similarity=0.222 Sum_probs=251.0
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
.-.++.|+|.++.+..+.++++. +..++.+|.|+||+|||.+|..||..+... +.+..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 45688999999999999999876 566789999999999999999999998543 356677777
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+...+. .+|.|+++.+++.+++.+....+.||||||||.|++.+...++ .....+.|.-.| .++.+-+|++|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaL----ARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPAL----ARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHH----hcCCeEEEEec
Confidence 777666 4799999999999999999888999999999999988765442 222233333333 37889999999
Q ss_pred Cchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHc-----cCCCHHHHH
Q 003859 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP----PSRELKSELAASC-----VGYCGADLK 593 (791)
Q Consensus 528 n~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~----~~~~~~~~LA~~t-----~G~s~~di~ 593 (791)
+.-+ .-|+||.| ||. .|.+..|+.++...||+.+-..+... .++..+...+..+ ..|-|.-..
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 8755 36899999 996 68999999999999999877776443 4455555555544 334555566
Q ss_pred HHHHHHHHHHHHhhC-CCc------------------cCC---Ccccccc----------------ccccceeHHHHHHH
Q 003859 594 ALCTEAAIRAFREKY-PQV------------------YTS---DDKFLID----------------VDSVTVEKYHFIEA 635 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~-~~~------------------~~~---~~~~~~~----------------~~~~~lt~~df~~A 635 (791)
.|+.+|+........ +.- ... ......+ ... .|+.+++..+
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~v 462 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEV 462 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHH
Confidence 666666655433211 000 000 0000000 001 1666788888
Q ss_pred hcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCC
Q 003859 636 MSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTG 715 (791)
Q Consensus 636 l~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtG 715 (791)
+..++..+..... ...-..+-.|++.|.+.+..++.++-.+. ..+-....|...|.++...|||.||+|||
T Consensus 463 v~~~TgIPv~~l~----~~e~~kll~le~~L~~rViGQd~AV~avs-----~aIrraRaGL~dp~rPigsFlF~GPTGVG 533 (786)
T COG0542 463 VARWTGIPVAKLL----EDEKEKLLNLERRLKKRVIGQDEAVEAVS-----DAIRRARAGLGDPNRPIGSFLFLGPTGVG 533 (786)
T ss_pred HHHHHCCChhhhc----hhhHHHHHHHHHHHhcceeChHHHHHHHH-----HHHHHHhcCCCCCCCCceEEEeeCCCccc
Confidence 8888765443111 00111222333333333333222221111 11222234555566655689999999999
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHHHHH--------------------HhhhhhcCCceEEEEeCchhhccc
Q 003859 716 VFNRIILGLQFYMNWRNFLFILLVFQLFFQ--------------------ILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 716 KT~la~~~~~~~~~~~~~~l~~d~~e~~~~--------------------~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
||+||+++|..+|+....++++||++++.+ .|+.|.+++|++|+|.+..++||+
T Consensus 534 KTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp 607 (786)
T COG0542 534 KTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP 607 (786)
T ss_pred HHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH
Confidence 999999999999999999999999998775 899999999987777777788986
No 39
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=2.1e-29 Score=302.24 Aligned_cols=344 Identities=19% Similarity=0.212 Sum_probs=231.7
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
+-.+++++|+++.+..+.+++.. ...+++||+||||||||++|++||+.+... +....++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 45788999999999998877654 345689999999999999999999998543 235678888
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++..++ .+|.|+.+..++.+|+.+....++||||||+|.|++.+...++. ..+.+.|...|. ++.+.+|++|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g~i~~IgaT 318 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SGKLRCIGST 318 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CCCeEEEEec
Confidence 887777 47889999999999999988789999999999998765432221 123344444444 6789999999
Q ss_pred Cchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCCC-----HHHHH
Q 003859 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYC-----GADLK 593 (791)
Q Consensus 528 n~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~----~~~~~~~~~~~LA~~t~G~s-----~~di~ 593 (791)
|..+ .+|++|.| ||. .|.|+.|+.+++..||+.+...+ .+.++++.+..++..+..|. |.-..
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 9743 47999999 997 79999999999999999776553 45678888888888877664 44556
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHH
Q 003859 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYI 673 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l 673 (791)
.|+.+|+.....+... .....|+..|+..++..++..+ ...+.|..+..|......+...
T Consensus 396 ~lld~a~a~~~~~~~~------------~~~~~v~~~~i~~~i~~~tgiP-------~~~~~~~~~~~l~~l~~~l~~~- 455 (731)
T TIGR02639 396 DVIDEAGASFRLRPKA------------KKKANVSVKDIENVVAKMAHIP-------VKTVSVDDREKLKNLEKNLKAK- 455 (731)
T ss_pred HHHHHhhhhhhcCccc------------ccccccCHHHHHHHHHHHhCCC-------hhhhhhHHHHHHHHHHHHHhcc-
Confidence 6777766543222110 1134589999999999887543 2334556555554322222221
Q ss_pred HhhcCCCCCcHHHHHhh----hhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHHHH-----
Q 003859 674 SDIFPPLGMSSELTKLC----MLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQLFF----- 744 (791)
Q Consensus 674 ~~~~p~~~~~~~~~~~~----~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~~~----- 744 (791)
.+.|......+. ....|...+.++...|||+||||||||++|++++..+.. .+++.+|+++..
T Consensus 456 -----v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 456 -----IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEYMEKHTVS 527 (731)
T ss_pred -----eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchhhhcccHH
Confidence 122322222111 111222233333335999999999999988888887632 122223322111
Q ss_pred ---------------HHhhhhhcC-CceEEEEeCchhhcc
Q 003859 745 ---------------QILVPRHQR-RHWCIYLVKLEEQRH 768 (791)
Q Consensus 745 ---------------~~~~~a~~~-~P~ivfldeid~~a~ 768 (791)
..|+.+.+. ..+||||||||...+
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~ 567 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP 567 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH
Confidence 134444433 456999999984433
No 40
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=2.8e-29 Score=305.09 Aligned_cols=213 Identities=20% Similarity=0.218 Sum_probs=174.7
Q ss_pred hhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh-----------------------
Q 003859 402 PDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW----------------------- 458 (791)
Q Consensus 402 ~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~----------------------- 458 (791)
...+.++|+.+|+||||+||||||||+||+|||.++ .++|+.+++++++..+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es-----~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNS-----YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhc-----CCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 445678899999999999999999999999999998 4899999999888543
Q ss_pred ------------------HhHH--HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--
Q 003859 459 ------------------VGEA--ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-- 516 (791)
Q Consensus 459 ------------------~g~~--~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-- 516 (791)
.+.. ...++.+|+.|+..+||||||||||+|+.... ....+.+|++.|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 1122 23488999999999999999999999986421 1234788899998763
Q ss_pred -CCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHccCCCHHHHH
Q 003859 517 -SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR--KWKQPPSRELKSELAASCVGYCGADLK 593 (791)
Q Consensus 517 -~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~--~~~~~~~~~~~~~LA~~t~G~s~~di~ 593 (791)
...+|+||||||+|+.|||||+|||||++.|.|+.|+..+|.+++..++. ++.+......+..+|..|.||+|+||+
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 45689999999999999999999999999999999999999999886543 333332322358899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccccc
Q 003859 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
+||++|+..|+++... .|+..+|..|+.+.+.
T Consensus 1848 nLvNEAaliAirq~ks----------------~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1848 ALTNEALSISITQKKS----------------IIDTNTIRSALHRQTW 1879 (2281)
T ss_pred HHHHHHHHHHHHcCCC----------------ccCHHHHHHHHHHHHh
Confidence 9999999999998653 4677788888776654
No 41
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=1.7e-28 Score=295.91 Aligned_cols=205 Identities=22% Similarity=0.241 Sum_probs=155.2
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
+-+++.++|++..+..+.+++.. ...+++||+||||||||++|+.||+.+... +.+..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45788999999998888877654 345689999999999999999999998533 234556777
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+...+. ..+.|+++..++.+|..+.. ..++||||||+|.|++.++..+.. .+.+.|+..|. ++.+.||+|
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~l~----~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPALA----RGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHHhh----CCCeEEEEe
Confidence 766655 36889999999999999865 457899999999999765432211 22233333333 788999999
Q ss_pred CCchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHccCCC-----HHHH
Q 003859 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYC-----GADL 592 (791)
Q Consensus 527 tn~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~----~~~~~~~~~~~LA~~t~G~s-----~~di 592 (791)
|+..+ .++++|.| ||. .|.|+.|+.+++..||+.+...+ .+.++++.+..++..+.+|. |...
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 98754 48999999 996 79999999999999988776554 35567888888888887764 4555
Q ss_pred HHHHHHHHHH
Q 003859 593 KALCTEAAIR 602 (791)
Q Consensus 593 ~~l~~~A~~~ 602 (791)
..|+.+|+..
T Consensus 400 Idlldea~a~ 409 (852)
T TIGR03345 400 VSLLDTACAR 409 (852)
T ss_pred HHHHHHHHHH
Confidence 5566665543
No 42
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1e-28 Score=291.21 Aligned_cols=245 Identities=36% Similarity=0.594 Sum_probs=214.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
....|+++.|.+..++.|.+++.+ +..+..|..++...+.+|||+||||||||++|+++|.+++ ++|+.+++..
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f~~is~~~ 220 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSD 220 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEehHH
Confidence 457899999999999999999887 6678888888888899999999999999999999999984 7889999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+...+.+.....++.+|..+....||||||||+|.++..+... .......++++||..|+++.....++||+|||.+
T Consensus 221 ~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p 300 (644)
T PRK10733 221 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 300 (644)
T ss_pred hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCCh
Confidence 9999999999999999999999999999999999998776432 2233457889999999999888899999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+.||++++|||||++.|.|+.|+.++|.+||+.++....+..+.++ ..+|..|.|||++||.++|++|+..|.+....
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~-~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~- 378 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARGTPGFSGADLANLVNEAALFAARGNKR- 378 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH-HHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999999999999999999999999998877655554 67999999999999999999999999876432
Q ss_pred ccCCCccccccccccceeHHHHHHHhccccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
.|+..||..|+..+.+
T Consensus 379 ---------------~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 379 ---------------VVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---------------cccHHHHHHHHHHHhc
Confidence 4677777777665543
No 43
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-28 Score=291.61 Aligned_cols=347 Identities=19% Similarity=0.229 Sum_probs=228.3
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (791)
.-.++.++|.+..+..+.+++.. ....++||+||||||||++|+++|..+.... ....++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 34577899999999999987765 3457899999999999999999998874331 34556666
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+...++ ..|.|+.+..++.+|..+....++||||||||.|++.+..... ...+.+.|...+ .++.+.||++|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp~L----~~g~i~vIgAT 322 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLL----SSGKIRVIGST 322 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHHHHHHHHHHH----hCCCeEEEecC
Confidence 655555 4678899999999999988888899999999999876642221 122233333333 36789999999
Q ss_pred Cchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHcc-----CCCHHHHH
Q 003859 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCV-----GYCGADLK 593 (791)
Q Consensus 528 n~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~----~~~~~~~~~~LA~~t~-----G~s~~di~ 593 (791)
|.++ .+|++|.| ||. .|.|+.|+.+++..||+.+...+. +.++...+..++..+. .+.|....
T Consensus 323 t~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 9865 47999999 996 799999999999999998776653 4455666665555443 45577888
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHH
Q 003859 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYI 673 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l 673 (791)
.|+.+|+...... +. . .....|+..|+..++..++..+....... .-..+-.|...|++.+
T Consensus 400 dlldea~a~~~~~--~~---~-------~~~~~v~~~~i~~v~~~~tgip~~~~~~~----~~~~l~~l~~~L~~~V--- 460 (758)
T PRK11034 400 DVIDEAGARARLM--PV---S-------KRKKTVNVADIESVVARIARIPEKSVSQS----DRDTLKNLGDRLKMLV--- 460 (758)
T ss_pred HHHHHHHHhhccC--cc---c-------ccccccChhhHHHHHHHHhCCChhhhhhh----HHHHHHHHHHHhcceE---
Confidence 9999888654221 10 0 01235888999999999886554332111 1112223333332222
Q ss_pred HhhcCCCCCcHHHHHhh----hhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHH-------
Q 003859 674 SDIFPPLGMSSELTKLC----MLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQL------- 742 (791)
Q Consensus 674 ~~~~p~~~~~~~~~~~~----~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~------- 742 (791)
+.|......+. ....|...+-++...|||+||||||||++|+.++..+ + .+.++.+|+++
T Consensus 461 ------iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-~--~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 461 ------FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-G--IELLRFDMSEYMERHTVS 531 (758)
T ss_pred ------eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-C--CCcEEeechhhcccccHH
Confidence 22222211111 1112222233333369999999999999888887765 3 23333444322
Q ss_pred --HH-----------HHhhhhhcCCc-eEEEEeCchhhccccc
Q 003859 743 --FF-----------QILVPRHQRRH-WCIYLVKLEEQRHQYS 771 (791)
Q Consensus 743 --~~-----------~~~~~a~~~~P-~ivfldeid~~a~~~~ 771 (791)
+. ..|+.+.++.| |||||||||..-+.++
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~ 574 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVF 574 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHH
Confidence 11 24556655555 7999999998766553
No 44
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=9.4e-28 Score=291.02 Aligned_cols=365 Identities=19% Similarity=0.175 Sum_probs=237.4
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
.-.|+.|+|.++.+..|.+++.. ..++++||+||||||||++|++||..+... +....++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688999999999999998765 456789999999999999999999998532 235678888
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+...++ ..|.|+++..++.+|+.+....++||||||||.|++.+...+.. .+.+.|...+. ++.+.+|++|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l~----rg~l~~IgaT 314 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPALA----RGELQCIGAT 314 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHHh----CCCcEEEEeC
Confidence 888776 47889999999999999988888999999999999765432221 22333333333 6789999999
Q ss_pred Cchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccCCC-----HHHHH
Q 003859 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYC-----GADLK 593 (791)
Q Consensus 528 n~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~----~~~~~~~~~~~~LA~~t~G~s-----~~di~ 593 (791)
+..+ ..+++|.+ ||. .|.++.|+.++...|++.+... ..+.++.+.+..++..+.+|. |....
T Consensus 315 t~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 315 TLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred CHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence 8764 47899999 996 5899999999999999865543 344577888888888887765 45555
Q ss_pred HHHHHHHHHHHHhhCCCcc---------------------CCC-cc-------------------c------cccccccc
Q 003859 594 ALCTEAAIRAFREKYPQVY---------------------TSD-DK-------------------F------LIDVDSVT 626 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~---------------------~~~-~~-------------------~------~~~~~~~~ 626 (791)
.|+.+|+..........-. ... .. . ........
T Consensus 392 dlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (821)
T CHL00095 392 DLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPV 471 (821)
T ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 6666666544221100000 000 00 0 00011245
Q ss_pred eeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcE
Q 003859 627 VEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRL 706 (791)
Q Consensus 627 lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~ 706 (791)
|+..|+..++..++..+....... ....+-.|.+.|.+.+.++..++..+.......+ .|...+-++...|
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~----~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~-----~gl~~~~~p~~~~ 542 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKS----ESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRAR-----VGLKNPNRPIASF 542 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchh----HHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHh-----hcccCCCCCceEE
Confidence 888888888888876654322111 1111223333333333332222111100001112 2222333333369
Q ss_pred EEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHHHH--------------------HHhhhhhcCCc-eEEEEeCchh
Q 003859 707 LLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQLFF--------------------QILVPRHQRRH-WCIYLVKLEE 765 (791)
Q Consensus 707 Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~~~--------------------~~~~~a~~~~P-~ivfldeid~ 765 (791)
||+||||||||++|++++..+++.....++.||+++.. ..|+.+.+..| +||+|||+|.
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhh
Confidence 99999999999999999999987665666666654311 23566666667 6888999885
Q ss_pred hccccc
Q 003859 766 QRHQYS 771 (791)
Q Consensus 766 ~a~~~~ 771 (791)
.-+.+.
T Consensus 623 a~~~v~ 628 (821)
T CHL00095 623 AHPDIF 628 (821)
T ss_pred CCHHHH
Confidence 544433
No 45
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=6.8e-27 Score=248.80 Aligned_cols=221 Identities=20% Similarity=0.266 Sum_probs=173.0
Q ss_pred CCCCCCcc-CCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 374 ESVSFDDI-GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 374 ~~~~~~~l-~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
...+|+++ +|.--...-+..++... ........|+.+|.+++||||||||||++|++||++++ +.|+.+++.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi--~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~ 182 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI--AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAG 182 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH--HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHH
Confidence 35677777 66555555554444332 12223336789999999999999999999999999995 789999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHh-----cCCeEEEEeCCCccCCCCCCchhhhhHHHH-HHHHHHHhcc-----------
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIV-STLLALMDGL----------- 515 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~-----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~-~~Ll~~l~~~----------- 515 (791)
++.++|+|++++.++.+|..|.. .+||||||||||++++.+...+.....+++ .+|+++|++.
T Consensus 183 eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~ 262 (413)
T PLN00020 183 ELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWRE 262 (413)
T ss_pred HhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccc
Confidence 99999999999999999999975 469999999999999987654444445554 7999998753
Q ss_pred -CCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC----CCHH
Q 003859 516 -DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG----YCGA 590 (791)
Q Consensus 516 -~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G----~s~~ 590 (791)
.....|+||+|||+|+.|+++|+|+|||+..| ..|+.++|.+||+.+++...+. ...+..|+..+.| |.++
T Consensus 263 ~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~--~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 263 KEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS--REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred cccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC--HHHHHHHHHcCCCCCchhhhH
Confidence 23567999999999999999999999999864 5899999999999999987654 4555788888877 4555
Q ss_pred HHHHHHHHHHHHHHH
Q 003859 591 DLKALCTEAAIRAFR 605 (791)
Q Consensus 591 di~~l~~~A~~~a~~ 605 (791)
--..+..++...-+.
T Consensus 339 lrar~yd~~v~~~i~ 353 (413)
T PLN00020 339 LRARVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 46
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=3.2e-25 Score=269.68 Aligned_cols=206 Identities=24% Similarity=0.275 Sum_probs=152.6
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
+-.++.++|++..+..+.+++.. ...+++||+||||||||++|++||..+... +....++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 44788999999998888887755 445789999999999999999999987432 134566667
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhc-CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~-~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+...++ ..|.|+.+..++.+|..+... .++||||||||.|++.+...+. ..+.+.|... ..++.+.||++
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~----l~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPA----LARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchh----hhcCceEEEEe
Confidence 666665 568899999999999988653 5899999999999875433221 1223333333 34778999999
Q ss_pred CCchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHccCCC-----HHHH
Q 003859 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ----PPSRELKSELAASCVGYC-----GADL 592 (791)
Q Consensus 527 tn~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~----~~~~~~~~~LA~~t~G~s-----~~di 592 (791)
|+..+ .+|++|.| ||. .|.++.|+.+++..||+.+...+.. .+....+..++..+.+|. |.-.
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 98864 47999999 996 5889999999999999988777543 345566666777666553 5555
Q ss_pred HHHHHHHHHHH
Q 003859 593 KALCTEAAIRA 603 (791)
Q Consensus 593 ~~l~~~A~~~a 603 (791)
..|+.+|+..+
T Consensus 386 idlld~a~a~~ 396 (852)
T TIGR03346 386 IDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 47
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.93 E-value=4.4e-25 Score=267.39 Aligned_cols=189 Identities=22% Similarity=0.269 Sum_probs=141.1
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
+-.++.++|++..+..+.++++. ...+++||+||||||||++|++||..+... +....++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 45788999999998888887765 445689999999999999999999998532 124566777
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+...++ .+|.|+.+..++.+|..+.. ..++||||||+|.|++.+...+.. ...+.|...+ .++.+.||++
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~lkp~l----~~g~l~~Iga 313 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARGELHCVGA 313 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHhcchh----hcCCCeEEEc
Confidence 666655 56889999999999988654 568899999999998765433221 2222333333 4788999999
Q ss_pred CCchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHccC
Q 003859 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ----PPSRELKSELAASCVG 586 (791)
Q Consensus 527 tn~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~----~~~~~~~~~LA~~t~G 586 (791)
|+..+ .+|++|.| ||. .|.++.|+.+++..||+.+...+.. .+....+..++..+.+
T Consensus 314 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred CCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 99876 38999999 997 5889999999999999988766533 3344444444444433
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=6.8e-21 Score=203.81 Aligned_cols=221 Identities=20% Similarity=0.274 Sum_probs=172.0
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCC---ceEEEEcCCCChHHHHHHHHHHHHhhcCC--ceEEEEEechh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPP---RGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGAD 453 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~---~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~~~~ 453 (791)
.+|+|++.+|++|.+++.+ +....++...|+.++ .++||+||||||||++|+++|..+...+. ..+++.++...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999999877 456677777887544 46999999999999999999999865442 23588888899
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh--
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD-- 531 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~-- 531 (791)
+.+.++|.....+..+|..+. +.||||||+|.|+..+. .......++..|+..|+. ....++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 999999988777778887764 35999999999865322 223456788899999984 345678888876422
Q ss_pred ---hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------ccCCC-HHHHHHHHHHHHH
Q 003859 532 ---AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAAS------CVGYC-GADLKALCTEAAI 601 (791)
Q Consensus 532 ---~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~------t~G~s-~~di~~l~~~A~~ 601 (791)
.++|+|.+ ||+..|.|++|+.+++.+|+..++......++......|+.. ...|. ++.+++++..|..
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 24699999 999999999999999999999999987777776655444443 23444 8999999999988
Q ss_pred HHHHhhCC
Q 003859 602 RAFREKYP 609 (791)
Q Consensus 602 ~a~~~~~~ 609 (791)
....|...
T Consensus 253 ~~~~r~~~ 260 (287)
T CHL00181 253 RQANRIFE 260 (287)
T ss_pred HHHHHHHc
Confidence 77776543
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=4.6e-21 Score=203.35 Aligned_cols=221 Identities=21% Similarity=0.249 Sum_probs=167.7
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHHHhhcC--CceEEEEEec
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKG 451 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~i~~ 451 (791)
.+++|+|++.+|+.|++++.++... ......|+.. ..++||+||||||||++|+++|+.+...+ ....++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3578999999999999998775433 3333455542 35799999999999999999999885443 3346788899
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch-
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV- 530 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~- 530 (791)
.++.+.++|+....+..+|..+. ++||||||+|.|.... ........+..|+..|+.. ...+++|++++..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 99999999999888889988764 4699999999996321 1123456778888888853 4556666655432
Q ss_pred ----hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc---------cCCCHHHHHHHHH
Q 003859 531 ----DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC---------VGYCGADLKALCT 597 (791)
Q Consensus 531 ----~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t---------~G~s~~di~~l~~ 597 (791)
..++++|.+ ||...|.|+.++.+++.+|++.++......++.+.+..|+... ..-+++.+.+++.
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 236889998 9988999999999999999999999887777777776665432 1235788889999
Q ss_pred HHHHHHHHhhC
Q 003859 598 EAAIRAFREKY 608 (791)
Q Consensus 598 ~A~~~a~~~~~ 608 (791)
.|..+...+..
T Consensus 233 ~a~~~~~~r~~ 243 (261)
T TIGR02881 233 KAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHh
Confidence 88877766544
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.5e-20 Score=201.25 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=175.0
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHHHhhcCC--ceEEEEEechhh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGADV 454 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~~~~~ 454 (791)
+|+|++++|++|.+++.+ +..+..+...|+.. ..++||+||||||||++|+++|+.+...+. ..+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999888 66778888888764 348999999999999999999999876543 236888888888
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch--hh
Q 003859 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV--DA 532 (791)
Q Consensus 455 ~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~--~~ 532 (791)
...++|.....+..+|..+.. +||||||++.|.+.+. .......++..|+..|+. ....++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 888888887778888887643 6999999999864322 123456778889999884 34577888877643 33
Q ss_pred ---hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc------cC-CCHHHHHHHHHHHHHH
Q 003859 533 ---IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC------VG-YCGADLKALCTEAAIR 602 (791)
Q Consensus 533 ---Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t------~G-~s~~di~~l~~~A~~~ 602 (791)
++++|.+ ||...|.||+++.+++..|++.++......++...+..++... .. -+++++++++..|...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 4899999 9999999999999999999999999987777877777666542 22 3589999999999887
Q ss_pred HHHhhCC
Q 003859 603 AFREKYP 609 (791)
Q Consensus 603 a~~~~~~ 609 (791)
...+...
T Consensus 253 ~~~r~~~ 259 (284)
T TIGR02880 253 QANRLFC 259 (284)
T ss_pred HHHHHhc
Confidence 7776543
No 51
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.86 E-value=1.1e-20 Score=214.66 Aligned_cols=243 Identities=13% Similarity=0.104 Sum_probs=159.8
Q ss_pred CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHH
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEAR 557 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer 557 (791)
|.|++|.++|.++.. ..+...|.++...+....+.+||.+.+ ..+|..|.+ +..++.+|+|+.+++
T Consensus 82 ~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLND---------ISISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcc---------hHHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHH
Confidence 789999999999831 122333333322233344555555543 357777764 446789999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 558 AEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 558 ~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
..+|+.+........+...++.|+..+.|++..++..++..+.. .. ..++.+++...++
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~i~~ 206 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----TY-----------------KTIDENSIPLILE 206 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----Hc-----------------CCCChhhHHHHHH
Confidence 99999988877777888888999999999999999999886442 11 1244455554554
Q ss_pred ccccccccCccccc--CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCC
Q 003859 638 TITPAAHRGATVHS--RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTG 715 (791)
Q Consensus 638 ~~~p~~~r~~~l~~--~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtG 715 (791)
...+...+...++. +.++|.+||||+...+.+...... .+..+.++ ++..+.|+|||||||||
T Consensus 207 ~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~------~~~~~~~~---------gl~~pkGILL~GPpGTG 271 (489)
T CHL00195 207 EKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS------FSKQASNY---------GLPTPRGLLLVGIQGTG 271 (489)
T ss_pred HHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH------hhHHHHhc---------CCCCCceEEEECCCCCc
Confidence 44433333333333 678999999997544433332111 11222222 44556699999999999
Q ss_pred hhHHHHHHHHHHcCc-----hhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 716 VFNRIILGLQFYMNW-----RNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 716 KT~la~~~~~~~~~~-----~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
||++|++++..+ +. ....+...+ -..++++|..|+..+||||||||||.++....
T Consensus 272 KTllAkaiA~e~-~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~ 335 (489)
T CHL00195 272 KSLTAKAIANDW-QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSE 335 (489)
T ss_pred HHHHHHHHHHHh-CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhcccc
Confidence 997777776653 22 111111111 25677888889999999999999999887543
No 52
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.2e-21 Score=198.92 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=101.5
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH---
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF--- 726 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~--- 726 (791)
..|.+++.+||||+.+++++.+.+.. |+.+|+.|.++|+. +|.|+|||||||||||+||++.|..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VEL---PL~~PElF~~~GI~---------PPKGVLLYGPPGTGKTLLAkAVA~~T~A 211 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVEL---PLKNPELFEELGID---------PPKGVLLYGPPGTGKTLLAKAVANQTDA 211 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcc---cccCHHHHHHcCCC---------CCCceEeeCCCCCcHHHHHHHHHhccCc
Confidence 45899999999999999999999988 99999999999886 2559999999999999888877754
Q ss_pred -HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccccc
Q 003859 727 -YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHS 775 (791)
Q Consensus 727 -~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~ 775 (791)
|.-+.++.|...|+ ++++++|.-|+.++||||||||||+++..|..+..
T Consensus 212 tFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t 265 (406)
T COG1222 212 TFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGT 265 (406)
T ss_pred eEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCC
Confidence 56678888888886 89999999999999999999999999998876643
No 53
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.2e-20 Score=188.52 Aligned_cols=242 Identities=28% Similarity=0.349 Sum_probs=181.1
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCceEEEEEec
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRKG 451 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i~~ 451 (791)
-|++|+--..+|+.|..++...+.+.+.-..-+ +...+-|||+||||||||+||++||+.+.-. .+...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 366778888899999998876554443322222 2344679999999999999999999998432 56788999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhc---CC--eEEEEeCCCccCCCCCC----chhhhhHHHHHHHHHHHhccCCCCcEE
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRN---QP--SIIFFDEIDGLAPVRSS----KQEQIHNSIVSTLLALMDGLDSRGQVV 522 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~---~p--~VL~IDEiD~L~~~~~~----~~~~~~~~v~~~Ll~~l~~~~~~~~vi 522 (791)
..++++|++++.+.+..+|+..... .. ..|+|||++.|+..+.. ......-++++.+|..|+.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999887642 22 35679999999877632 222345689999999999999999999
Q ss_pred EeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC---CC----CCC----------HHHHHHHHHH-c
Q 003859 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---KQ----PPS----------RELKSELAAS-C 584 (791)
Q Consensus 523 vIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~---~~----~~~----------~~~~~~LA~~-t 584 (791)
+++|+|..+.||.|+.. |-+-+.++.+|+...+..|++.++..+ ++ ..+ ......++.. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 999999999999999999999877542 10 001 1111223333 5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcc
Q 003859 585 VGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (791)
Q Consensus 585 ~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~ 638 (791)
.|+||+-|+.|=-.|...-. ...+++..+|..|+..
T Consensus 378 ~gLSGRtlrkLP~Laha~y~------------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEYF------------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhcc------------------CCCccChHHHHHHHHH
Confidence 89999999887543332211 2345888888877643
No 54
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-19 Score=195.60 Aligned_cols=214 Identities=22% Similarity=0.273 Sum_probs=163.9
Q ss_pred CCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEE
Q 003859 367 IQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (791)
Q Consensus 367 ~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (791)
..++..+.+.+|+.|+--.+.|+.|.+-+..+++..+.|.+.|....+|.|||||||||||+++.|+|+.|.. .+
T Consensus 189 W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-----dI 263 (457)
T KOG0743|consen 189 WRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-----DI 263 (457)
T ss_pred ceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-----ce
Confidence 3345555669999999999999999999999999999999999999999999999999999999999999953 33
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchh-------hhhHHHHHHHHHHHhccCCCC
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE-------QIHNSIVSTLLALMDGLDSRG 519 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~-------~~~~~v~~~Ll~~l~~~~~~~ 519 (791)
+.++.+.... ..+ ++.++..+. ..+||+|.+||+-+..+..... ....-.++.||+.++++-+..
T Consensus 264 ydLeLt~v~~----n~d--Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc 335 (457)
T KOG0743|consen 264 YDLELTEVKL----DSD--LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC 335 (457)
T ss_pred EEeeeccccC----cHH--HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC
Confidence 3333322211 111 566655443 3479999999987653322111 123467889999999987765
Q ss_pred --cEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC--CCHHHHHHH
Q 003859 520 --QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG--YCGADLKAL 595 (791)
Q Consensus 520 --~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G--~s~~di~~l 595 (791)
.-|||.|||.++.|||||+||||++.+|++...+.++...++..++..-. +-.+..++.....+ .||+++...
T Consensus 336 g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 336 GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHHH
Confidence 78999999999999999999999999999999999999999999887633 22333444444433 588888765
Q ss_pred H
Q 003859 596 C 596 (791)
Q Consensus 596 ~ 596 (791)
+
T Consensus 413 l 413 (457)
T KOG0743|consen 413 L 413 (457)
T ss_pred H
Confidence 3
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=9.5e-19 Score=176.04 Aligned_cols=191 Identities=25% Similarity=0.330 Sum_probs=132.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+.+|++++|++.++..+.-++...... -....++|||||||+||||||+.||++++ +.|...++..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~ 85 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPA 85 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchh
Confidence 4668999999999999988776542111 13456899999999999999999999995 6666666643
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC----------------
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------------- 517 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------------- 517 (791)
+-. .+ .+..++... ....||||||||.| ...+...|+..|+...-
T Consensus 86 i~k--~~----dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 86 IEK--AG----DLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp --S--CH----HHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred hhh--HH----HHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 321 11 222333332 23569999999998 46677888888886421
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
-.++.+|+||+....|...|+. ||..+..+..++.++..+|++.....+...++.+....||.++.| +|+-..+|++
T Consensus 147 l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1358899999999999999999 999888999999999999999999999999999999999999987 6777777766
Q ss_pred HH
Q 003859 598 EA 599 (791)
Q Consensus 598 ~A 599 (791)
++
T Consensus 224 rv 225 (233)
T PF05496_consen 224 RV 225 (233)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=4.6e-19 Score=167.16 Aligned_cols=130 Identities=40% Similarity=0.735 Sum_probs=114.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcC-CeEEEEeCCCccCCCCC
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRS 494 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~-p~VL~IDEiD~L~~~~~ 494 (791)
|||+||||||||++|+.+|+.++ .+++.+++..+...+.+.....+..+|..+.... |+||||||+|.+++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 79999999999999999999984 8899999999998888999999999999999887 99999999999998764
Q ss_pred CchhhhhHHHHHHHHHHHhccCCC-CcEEEeccCCchhhhhhhhcCCCCccccccCCC
Q 003859 495 SKQEQIHNSIVSTLLALMDGLDSR-GQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (791)
Q Consensus 495 ~~~~~~~~~v~~~Ll~~l~~~~~~-~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~ 551 (791)
.........++..|+..++..... .+++||+|||.++.+++.|++ +||+..|+||+
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 444556778899999999987664 569999999999999999997 79999998874
No 57
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-18 Score=181.70 Aligned_cols=211 Identities=27% Similarity=0.415 Sum_probs=151.2
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
.-.|++||-.......|..+....-. .+.+-.+-++||||||||||||++|+.||...+ +.|-.+.+.++
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaN-----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SG-----lDYA~mTGGDV 420 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATAN-----TKKHQAPFRNILFYGPPGTGKTMFARELARHSG-----LDYAIMTGGDV 420 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcc-----cccccchhhheeeeCCCCCCchHHHHHHHhhcC-----CceehhcCCCc
Confidence 34577888888888888776543211 111223457899999999999999999999875 44444444333
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcC-CeEEEEeCCCccCCCCCC-chhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhh
Q 003859 455 LSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSS-KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (791)
Q Consensus 455 ~~~~~g~~~~~l~~lf~~a~~~~-p~VL~IDEiD~L~~~~~~-~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~ 532 (791)
. ..-.+....|..+|+-+.... .-+|||||+|+++-.++. .........++.||--. -.....|+++.+||+|..
T Consensus 421 A-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT--GdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 421 A-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT--GDQSRDIVLVLATNRPGD 497 (630)
T ss_pred c-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh--cccccceEEEeccCCccc
Confidence 2 122345567889999988765 458899999998765533 22333445555554322 234567999999999999
Q ss_pred hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCC--------------------------CCCHHHHHHHHHHccC
Q 003859 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ--------------------------PPSRELKSELAASCVG 586 (791)
Q Consensus 533 Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~--------------------------~~~~~~~~~LA~~t~G 586 (791)
+|.++.. ||+.+|+||+|..++|..||..++..+-. ......+.+.|..|.|
T Consensus 498 lDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG 575 (630)
T KOG0742|consen 498 LDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG 575 (630)
T ss_pred hhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC
Confidence 9999998 99999999999999999999988866421 0123456788999999
Q ss_pred CCHHHHHHHHHHHH
Q 003859 587 YCGADLKALCTEAA 600 (791)
Q Consensus 587 ~s~~di~~l~~~A~ 600 (791)
|||++|..|+.-..
T Consensus 576 fSGREiakLva~vQ 589 (630)
T KOG0742|consen 576 FSGREIAKLVASVQ 589 (630)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999976433
No 58
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.2e-17 Score=193.13 Aligned_cols=368 Identities=20% Similarity=0.206 Sum_probs=210.3
Q ss_pred CCccCCc-HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEEec
Q 003859 378 FDDIGGL-SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKG 451 (791)
Q Consensus 378 ~~~l~G~-e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~~ 451 (791)
++.++|. ++.+..+.+++.. ...++.+|.|.||+|||.++.-+|+.+.... ....++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5667777 8888888887755 4447899999999999999999999985442 2333444444
Q ss_pred h--hhhhhhHhHHHHHHHHHHHHHH-hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 A--DVLSKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~--~~~~~~~g~~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
. ....++.|+++..++.+...+. .....||||||+|.+++.+...+ .....+.|...+ .++.+.+|+||+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~nlLkp~L----~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAANLLKPLL----ARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHHhhHHHH----hcCCeEEEeccc
Confidence 3 3335678899999999999888 45678999999999997765522 222222222222 355699999887
Q ss_pred chh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCH----HHH---HHHH--HHccCCCHHHHHH
Q 003859 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSR----ELK---SELA--ASCVGYCGADLKA 594 (791)
Q Consensus 529 ~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~----~~~---~~LA--~~t~G~s~~di~~ 594 (791)
.-+ .-+|+|.+ ||+ .+.++.|+.+....||......+...+.. ..+ ..++ ..+..|.+.-+..
T Consensus 325 ~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aid 401 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAID 401 (898)
T ss_pred HHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhccc
Confidence 432 35899999 997 57799999888777887666553222111 110 0111 1233344444444
Q ss_pred HHHHHHHHHHHhhCC------Cc----cC-CCc----ccccc-----------ccccc----------eeHHHHHHHhcc
Q 003859 595 LCTEAAIRAFREKYP------QV----YT-SDD----KFLID-----------VDSVT----------VEKYHFIEAMST 638 (791)
Q Consensus 595 l~~~A~~~a~~~~~~------~~----~~-~~~----~~~~~-----------~~~~~----------lt~~df~~Al~~ 638 (791)
++.+|+.....+... .. .. ... ...++ ..... -....+..-+..
T Consensus 402 l~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~ 481 (898)
T KOG1051|consen 402 LEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKL 481 (898)
T ss_pred HHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhcc
Confidence 444444333221000 00 00 000 00000 00000 000011111100
Q ss_pred ccccc---------ccC-----------------------------cccccCCCccchHHHH------HHHHHHHHHHHH
Q 003859 639 ITPAA---------HRG-----------------------------ATVHSRPLSLVVAPCL------QRHLQKAMNYIS 674 (791)
Q Consensus 639 ~~p~~---------~r~-----------------------------~~l~~~~v~~~dIggL------k~~l~~l~~~l~ 674 (791)
..... .+. ..+......|..++-. ...+..+.+.|.
T Consensus 482 ~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~ 561 (898)
T KOG1051|consen 482 KKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLH 561 (898)
T ss_pred ccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHH
Confidence 00000 000 0000111234444422 123334444443
Q ss_pred hhcCCCCCcHHHHHhhhhccCCCCCCCC--CC-cEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHHHH-------
Q 003859 675 DIFPPLGMSSELTKLCMLSHGSAIPLVY--RP-RLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQLFF------- 744 (791)
Q Consensus 675 ~~~p~~~~~~~~~~~~~~~~g~~~~l~~--~~-g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~~~------- 744 (791)
+.+ ..|.+....+.-.......++.. +. .|||+||.|+|||.||++++..+|+....+++.||+++..
T Consensus 562 ~~V--~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERV--IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhc--cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCC
Confidence 322 22333333333222222223333 23 6999999999999999999999999999999999986322
Q ss_pred ----------HHhhhhhcCCceEEEEeCchhhcccc
Q 003859 745 ----------QILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 745 ----------~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
..|+.+.+++|++|+|.|..++||+-
T Consensus 640 p~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~ 675 (898)
T KOG1051|consen 640 PPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPD 675 (898)
T ss_pred CcccccchhHHHHHHHHhcCCceEEEEechhhcCHH
Confidence 37899999999999888888899853
No 59
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=5.1e-17 Score=166.09 Aligned_cols=199 Identities=22% Similarity=0.268 Sum_probs=155.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+..|++.+|++++|+.|.-++..... .-...-++|||||||.||||||..+|++++ +++...++..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~--------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-----vn~k~tsGp~ 87 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKK--------RGEALDHVLLFGPPGLGKTTLAHIIANELG-----VNLKITSGPA 87 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHh--------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-----CCeEeccccc
Confidence 367899999999999999988876322 224556899999999999999999999995 6665555554
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC----------------
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------------- 517 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------------- 517 (791)
+.. ...+..++... ....||||||||.|. ..+-..|+..|+.++-
T Consensus 88 leK------~gDlaaiLt~L--e~~DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld 148 (332)
T COG2255 88 LEK------PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLD 148 (332)
T ss_pred ccC------hhhHHHHHhcC--CcCCeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEecc
Confidence 422 12223333332 234799999999995 3455556667765421
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
-.++.+|++|++...|...|+. ||..+..+..++.++...|+......+...++.+....+|.++.| +|+-...|++
T Consensus 149 LppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 149 LPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 1468999999999999999999 999999999999999999999999999999999988999999987 7788888888
Q ss_pred HHHHHHHHhh
Q 003859 598 EAAIRAFREK 607 (791)
Q Consensus 598 ~A~~~a~~~~ 607 (791)
+....|.-..
T Consensus 226 RVRDfa~V~~ 235 (332)
T COG2255 226 RVRDFAQVKG 235 (332)
T ss_pred HHHHHHHHhc
Confidence 8877776543
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=8.3e-16 Score=177.75 Aligned_cols=192 Identities=20% Similarity=0.176 Sum_probs=144.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|++||+.+....
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 567899999999999999998754 13455689999999999999999999985421
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.++.... .....++.+++.+.. ....||||||+|.|. ....+.||.
T Consensus 79 Cr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHH
Confidence 1123444443321 112334455554432 234699999999883 345677888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ...+++||++||.+..|.+.|++ || ..|.|..++.++...+|+.++...++.++.+.+..|+..+.|- .+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 8884 45578889999999999999999 99 4799999999999999999998888888899888899988874 45
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
+..+++.++.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 6666666555
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=1.7e-16 Score=172.33 Aligned_cols=211 Identities=21% Similarity=0.272 Sum_probs=149.8
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
+|++++|++++++.|..++..... ....+.++||+||||||||+||+++|++++. .+....+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEK 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcC
Confidence 689999999999999988754211 1134568999999999999999999999852 233332221111
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC----------------CCCc
Q 003859 457 KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SRGQ 520 (791)
Q Consensus 457 ~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~----------------~~~~ 520 (791)
.+ .+...+.. ...+.||||||+|.+.+ .....|+.+|+... ...+
T Consensus 69 --~~----~l~~~l~~--~~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 129 (305)
T TIGR00635 69 --PG----DLAAILTN--LEEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP 129 (305)
T ss_pred --ch----hHHHHHHh--cccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCC
Confidence 11 11122222 13467999999998852 22334555554322 1134
Q ss_pred EEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 521 vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
+++|++||.+..++++|++ ||...+.|++|+.+++.+|++..+......++.+.+..|+..+.|+. +.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred eEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 7889999999999999998 99888999999999999999999988888889999999999999865 66678888776
Q ss_pred HHHHHhhCCCccCCCccccccccccceeHHHHHHHhcc
Q 003859 601 IRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (791)
Q Consensus 601 ~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~ 638 (791)
..|..... ..++.+++..++..
T Consensus 207 ~~a~~~~~----------------~~it~~~v~~~l~~ 228 (305)
T TIGR00635 207 DFAQVRGQ----------------KIINRDIALKALEM 228 (305)
T ss_pred HHHHHcCC----------------CCcCHHHHHHHHHH
Confidence 55543221 13677777777755
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=2.3e-16 Score=173.01 Aligned_cols=215 Identities=23% Similarity=0.258 Sum_probs=154.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+.+|++++|++.+++.|..++.... . .-.++.++|||||||||||++|+++|++++ ..+...++..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~-------~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~-----~~~~~~~~~~ 86 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAK-------K-RGEALDHVLLYGPPGLGKTTLANIIANEMG-----VNIRITSGPA 86 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEECCCCccHHHHHHHHHHHhC-----CCeEEEeccc
Confidence 34589999999999999988875421 1 114567899999999999999999999985 2333333332
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC----------------C
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------S 517 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~----------------~ 517 (791)
+.. ...+..++... ..++||||||||.+.. .....|+.+|+... .
T Consensus 87 ~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (328)
T PRK00080 87 LEK------PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLD 147 (328)
T ss_pred ccC------hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeec
Confidence 211 11223333322 3467999999998852 12223444444321 1
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
-.++++|++||.+..++++|++ ||...+.|++|+.+++.+||+..+.......+.+.+..|+..+.|. ++.+..++.
T Consensus 148 l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~ 224 (328)
T PRK00080 148 LPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLR 224 (328)
T ss_pred CCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHH
Confidence 1347889999999999999988 9988899999999999999999999988889999999999999985 477888888
Q ss_pred HHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 598 EAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 598 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
.+...+..... ..|+.+++..++..+
T Consensus 225 ~~~~~a~~~~~----------------~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 225 RVRDFAQVKGD----------------GVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHcCC----------------CCCCHHHHHHHHHHh
Confidence 77766654321 136777777777543
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.3e-16 Score=170.61 Aligned_cols=171 Identities=27% Similarity=0.378 Sum_probs=128.6
Q ss_pred CCCCCCccCCcHHHHH---HHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 374 ESVSFDDIGGLSEYID---ALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~---~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+.+|++++|++..+. -|..+|.. ....+++|||||||||||||+.||...+ ..|..++
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~~~s 80 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTN-----AAFEALS 80 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhC-----CceEEec
Confidence 4678899999998773 34444433 3456899999999999999999999884 6677666
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+... ..+.++.+|+.++.. ...||||||||.+- ...+..||-.|+ ++.|++|++
T Consensus 81 Av~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE----~G~iilIGA 138 (436)
T COG2256 81 AVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVE----NGTIILIGA 138 (436)
T ss_pred cccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhc----CCeEEEEec
Confidence 5432 345677888887543 25799999999883 445667888777 778899987
Q ss_pred C--CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc--CC-----CCCCHHHHHHHHHHccCC
Q 003859 527 T--NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WK-----QPPSRELKSELAASCVGY 587 (791)
Q Consensus 527 t--n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~--~~-----~~~~~~~~~~LA~~t~G~ 587 (791)
| |..-.|+++|++ |+. ++.|.+.+.++..++|+..+.. .+ ..++++.++.|+..+.|-
T Consensus 139 TTENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 139 TTENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred cCCCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 7 444579999999 884 7889999999999999984433 22 235677888888888874
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8e-16 Score=172.26 Aligned_cols=192 Identities=19% Similarity=0.179 Sum_probs=144.5
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|..++... ..+..+||+||+|||||++|+.+|+.+....
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 5678999999999999998887651 3345699999999999999999999986431
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++..- .....++.+...+. .....|+||||+|.|. ...++.||.
T Consensus 81 C~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 1112333333211 11223444443332 2345699999999883 456788888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ...++++|++|+.+..|.+.|++ ||. .+.|..++.++....|+.++...++..+.+.+..||..+.| +.+
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 8884 45788999999999999999999 985 68999999999999999999888888899999889988887 466
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
+..+++..+.
T Consensus 218 dAL~lLeq~i 227 (484)
T PRK14956 218 DMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHH
Confidence 6667776654
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.9e-16 Score=176.46 Aligned_cols=193 Identities=20% Similarity=0.208 Sum_probs=144.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++..- +.+..+||+||+|||||++|+.||+.+....
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 5678999999999999999988651 3456789999999999999999999986421
Q ss_pred ------------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHH
Q 003859 442 ------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (791)
Q Consensus 442 ------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~ 505 (791)
....++.++.... . ....++.+++.+. .....|+||||+|.|. ....
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~--~----gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~Aa 141 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASN--R----GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAF 141 (700)
T ss_pred cccHHHHHHHcCCCCcceEeccccc--C----CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHH
Confidence 1113334433211 1 1233444444432 3345799999999883 4567
Q ss_pred HHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 003859 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (791)
Q Consensus 506 ~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~ 585 (791)
+.||..|+. ...+++||++||.+..|.+.|++ || ..+.|..++.++..+.|+.++...++..+.+.+..|+..+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788998884 45678889999999999999999 98 57999999999999999999887777788887777888777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003859 586 GYCGADLKALCTEAAI 601 (791)
Q Consensus 586 G~s~~di~~l~~~A~~ 601 (791)
| +.++..+++..+..
T Consensus 217 G-s~RdALsLLdQaia 231 (700)
T PRK12323 217 G-SMRDALSLTDQAIA 231 (700)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 56677777766553
No 66
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.67 E-value=4.3e-15 Score=169.77 Aligned_cols=212 Identities=16% Similarity=0.202 Sum_probs=147.4
Q ss_pred ccCCCCCCCc-cCCcHH--HHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 371 QVDESVSFDD-IGGLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 371 ~~~~~~~~~~-l~G~e~--~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
...+..+|++ ++|..+ ++..+..+...| + ...+.++||||+|||||+|++++|+++........++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~ 182 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVV 182 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 3457889999 445443 444444443321 1 2235699999999999999999999997664456677
Q ss_pred EEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 448 ~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++++..+...+..........-|.... ..+.||+|||++.+.+.. .....|+..++.+...+..+||+++
T Consensus 183 yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 183 YVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE---------RTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred EEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCCCcEEEECC
Confidence 788888776655443322222232222 246799999999886421 1233455555554445556777776
Q ss_pred Cchhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 528 n~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|.. +++.|.+ ||. .++.|.+|+.++|..||+..+...+..++.+.++.||..+.| +.+.|..++......
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 66655 6788888 885 578999999999999999999988888899999999988876 677777777776655
Q ss_pred HHHh
Q 003859 603 AFRE 606 (791)
Q Consensus 603 a~~~ 606 (791)
+...
T Consensus 330 ~~~~ 333 (450)
T PRK00149 330 ASLT 333 (450)
T ss_pred HHhh
Confidence 5443
No 67
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=2.2e-15 Score=182.44 Aligned_cols=231 Identities=20% Similarity=0.217 Sum_probs=150.4
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV----- 454 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~----- 454 (791)
++.|++.+++.|.+++...... +.....++||+||||||||++|++||..++ ..|+.+++..+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~-----~~~~~i~~~~~~~~~~ 388 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALN-----RKFVRFSLGGVRDEAE 388 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhc-----CCeEEEeCCCcccHHH
Confidence 4899999999999987653211 112334799999999999999999999995 34444433221
Q ss_pred -h---hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc-----cC--------C
Q 003859 455 -L---SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG-----LD--------S 517 (791)
Q Consensus 455 -~---~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~-----~~--------~ 517 (791)
. ..|+|.....+...|..+....| ||||||||.+.+..+. ...+.|+..|+. +. .
T Consensus 389 i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-------~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 389 IRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-------DPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-------CHHHHHHHhcCHHhcCccccccCCceec
Confidence 1 23555555666677777765556 8999999999753211 123456665552 11 1
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh-----c--C---CCCCCHHHHHHHHHH-ccC
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-----K--W---KQPPSRELKSELAAS-CVG 586 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~-----~--~---~~~~~~~~~~~LA~~-t~G 586 (791)
.+++++|+|||.++.|+++|++ ||. +|.|+.|+.+++..|++.++. . + .+.++.+.+..|+.. +..
T Consensus 461 ~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred cCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 2578999999999999999999 995 789999999999999987662 1 1 345677777777763 334
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 587 YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 587 ~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
+..+.|+.++...+..+..+..... .........+.|+.+++...+.
T Consensus 538 ~g~R~l~r~i~~~~~~~~~~~~~~~----~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 538 AGVRNLERQIEKICRKAAVKLVEQG----EKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcc----CcccCCcccccCCHHHHHHhcC
Confidence 4556666655554444433221100 0000011235678887777765
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.66 E-value=6.8e-15 Score=166.09 Aligned_cols=209 Identities=16% Similarity=0.210 Sum_probs=143.3
Q ss_pred cCCCCCCCc-cCCcHHH--HHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 372 VDESVSFDD-IGGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 372 ~~~~~~~~~-l~G~e~~--k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
..+..+|++ ++|.... +..+..+...+ + ...+.++||||+|+|||+|++++++++........+++
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~y 171 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVY 171 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEE
Confidence 346789999 6675543 33333332221 1 23457999999999999999999999876543456677
Q ss_pred EechhhhhhhHhHHHH-HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 449 RKGADVLSKWVGEAER-QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~-~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+++..+...+...... .+..+..... .+.||+|||++.+.+.. .....|+..++.+...+..+||+++
T Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 172 VSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred EEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCCCCEEEecC
Confidence 7777776655433321 1112222222 35699999999886421 2233455555544444555677666
Q ss_pred Cchhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 528 n~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|.. +++.|.+ ||. ..+.|++|+.++|..||+..+...+..++.+.++.||..+.+ +.++|..++......
T Consensus 241 ~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 241 RPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66655 5578887 885 479999999999999999999998888999999999988765 678888888877666
Q ss_pred HHH
Q 003859 603 AFR 605 (791)
Q Consensus 603 a~~ 605 (791)
+..
T Consensus 318 a~~ 320 (405)
T TIGR00362 318 ASL 320 (405)
T ss_pred HHH
Confidence 654
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.4e-14 Score=166.34 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=155.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.+++.|..++..- ..+..+||+||+|||||++|+++|+.+...
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 5678999999999999999988651 345568999999999999999999998542
Q ss_pred ------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 441 ------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
+....++.+++..- .....++.+...+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHH
Confidence 11223455554321 112234455444332 234699999999884 445678888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..+.+.+++ |+ ..+.|..++..+....++..+...+...+...+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8885 34567777788888889888988 88 478999999999999999999888888888888888888765 778
Q ss_pred HHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 591 DLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 591 di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
++.+++..++... . ..||.+++...+....
T Consensus 216 ~al~lLdq~ia~~--~------------------~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 216 DALSLLDQSIAYG--N------------------GKVLIADVKTMLGTIE 245 (509)
T ss_pred HHHHHHHHHHhcC--C------------------CCcCHHHHHHHHCCCC
Confidence 8888887664321 1 1377778877765443
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3e-15 Score=170.25 Aligned_cols=190 Identities=17% Similarity=0.186 Sum_probs=138.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|..++... ..+.++|||||||||||++|+++|+.+....
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 5678999999999999998877652 3456799999999999999999999985421
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.++++.-. ....++.+...+.. ....||||||+|.|. ...++.|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~~~------gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASNR------GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcccC------CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHH
Confidence 11234455443211 11234444444332 234699999999883 345677888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ..+.+++|++|+.+..++++|.+ ||. .+.|.+++.++...+++..+...+..++.+.+..|+..+.| ..+
T Consensus 140 ~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 8874 34567777777778899999998 885 79999999999999999999888888899999999998876 334
Q ss_pred HHHHHHHH
Q 003859 591 DLKALCTE 598 (791)
Q Consensus 591 di~~l~~~ 598 (791)
.+.+++..
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 44444443
No 71
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-16 Score=158.37 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=96.4
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH---
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF--- 726 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~--- 726 (791)
+.|.+++.+||||.-+.+++.+.+.. |+.+.++|.++|+. ++.|+|||||||||||.|+++.+..
T Consensus 148 ekpdvsy~diggld~qkqeireavel---plt~~~ly~qigid---------pprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVEL---PLTHADLYKQIGID---------PPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhc---cchHHHHHHHhCCC---------CCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 35889999999999999999999888 99999999999887 2449999999999999888777753
Q ss_pred -HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 727 -YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 727 -~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
|.-+.+..|...+. ++++.+|.-|+..+|+||||||||++|..+-.+
T Consensus 216 ~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfda 267 (408)
T KOG0727|consen 216 AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA 267 (408)
T ss_pred heeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc
Confidence 55567788877776 788889999999999999999999999876543
No 72
>PRK06893 DNA replication initiation factor; Validated
Probab=99.65 E-value=8.3e-15 Score=152.41 Aligned_cols=199 Identities=12% Similarity=0.125 Sum_probs=131.0
Q ss_pred CcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 369 ~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
++...+..+|++++|.++.. .+..+... +.. .....++||||||||||+|++++|+++...+..+.|+.
T Consensus 6 ~~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 6 PIHQIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCCCCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 45566789999987655432 12211111 111 12245899999999999999999999877776777665
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc-EEEeccC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ-VVLIGAT 527 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~-vivIatt 527 (791)
.+..... ...++... ....+|+|||++.+.+.. .....|+.+++.....+. ++|++++
T Consensus 75 ~~~~~~~----------~~~~~~~~--~~~dlLilDDi~~~~~~~---------~~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 75 LSKSQYF----------SPAVLENL--EQQDLVCLDDLQAVIGNE---------EWELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHhhhh----------hHHHHhhc--ccCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 5322111 11222222 234699999999886421 112235555554444444 4566666
Q ss_pred Cchhhhh---hhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 528 NRVDAID---GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 528 n~~~~Ld---~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
..|..++ +.|.+..++...+.++.|+.+++.+||+..+....+.++.+.++.|+.++.| +.+.+..++....
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 6677654 7888833345688999999999999999999888889999999999998886 4566666666543
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=1.1e-14 Score=151.97 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=133.0
Q ss_pred CcccCCCCCCCccC-C-cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEE
Q 003859 369 PLQVDESVSFDDIG-G-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (791)
Q Consensus 369 ~~~~~~~~~~~~l~-G-~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (791)
++...+..+|++++ | ...++..+..+... ....+++||||+|||||+|++++|+.+...+..+.|
T Consensus 12 ~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y 78 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGY 78 (235)
T ss_pred CCCCCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 34456788899955 4 45566666665432 223579999999999999999999998776666676
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc-EEEec
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ-VVLIG 525 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~-vivIa 525 (791)
+.++... . +. ..+++.... ..+|||||++.+.+. ......|+.+++.....++ .+|++
T Consensus 79 ~~~~~~~--~-~~-------~~~~~~~~~--~dlliiDdi~~~~~~---------~~~~~~lf~l~n~~~e~g~~~li~t 137 (235)
T PRK08084 79 VPLDKRA--W-FV-------PEVLEGMEQ--LSLVCIDNIECIAGD---------ELWEMAIFDLYNRILESGRTRLLIT 137 (235)
T ss_pred EEHHHHh--h-hh-------HHHHHHhhh--CCEEEEeChhhhcCC---------HHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 6554311 1 11 111111111 258999999988532 1122233344443333444 35555
Q ss_pred cCCchhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 526 ATNRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 526 ttn~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
+++.|.. +.+.|++ ||. .++.+.+|+.+++.++|+..+...++.++++.++.|+..+.| +.+.+..++....
T Consensus 138 s~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 138 GDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred CCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 5566655 5789998 884 688999999999999999988877888999999999999886 5666777766644
Q ss_pred HHH
Q 003859 601 IRA 603 (791)
Q Consensus 601 ~~a 603 (791)
..+
T Consensus 215 ~~~ 217 (235)
T PRK08084 215 RAS 217 (235)
T ss_pred HHH
Confidence 333
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.4e-14 Score=165.87 Aligned_cols=193 Identities=21% Similarity=0.203 Sum_probs=145.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|+.++... +.+.++||+||+|||||++|++||+.+....
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 5678999999999999999987651 4456799999999999999999999875331
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.++...- .....++.++..+.. ....||||||+|.|. ...++.|+.
T Consensus 79 Cr~i~~g~~~DvlEidaAs~------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASN------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEecccc------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 1122333333211 112345555554422 234699999999773 345677888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..+...+++ || ..|.|..++.++...+|+..+...++.++...+..|+..+.| +.+
T Consensus 142 tLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 8884 34567778888888899989887 88 468899999999999999999998888899888888888865 678
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..++.
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.4e-15 Score=170.37 Aligned_cols=193 Identities=19% Similarity=0.201 Sum_probs=145.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.++..|..++.. -..+..+||+||+|||||++|+++|+.+...
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 467899999999999999998864 1445678999999999999999999998532
Q ss_pred ------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 441 ------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
+....++.+++++-. ....++.++..+. .....|+||||+|.|. ....+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHH
Confidence 122234444443211 1233445544432 2345699999999883 345677888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+.+|++|+.+..+++.+++ || ..+.|..++.++....|+..+...+...+...+..||..+.| +.+
T Consensus 141 tLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34567777788888889888887 88 479999999999999999999998888999998889988876 677
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..++.
T Consensus 215 dALnLLDQaIa 225 (702)
T PRK14960 215 DALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 76
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.8e-16 Score=156.95 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=94.4
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHH----H
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQ----F 726 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~----~ 726 (791)
.|...+.+||||.++++++++.+-. |..+.+.|.++|+. ++.|+|+|||||||||++|+++++ .
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVL---pmth~ekF~~lgi~---------pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVL---PMTHKEKFENLGIR---------PPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhcc---ccccHHHHHhcCCC---------CCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 4778899999999999999998655 89999999999875 355999999999999999987776 3
Q ss_pred HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 727 YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 727 ~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
|+..-+|-+..+++ .+++.+|.-|..++||||||||+|.+...+..+
T Consensus 233 FLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDS 283 (424)
T KOG0652|consen 233 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 283 (424)
T ss_pred HHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccc
Confidence 66666676665554 889999999999999999999999998877654
No 77
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=1.3e-14 Score=164.58 Aligned_cols=211 Identities=15% Similarity=0.178 Sum_probs=142.7
Q ss_pred cCCCCCCCccC-CcHHHH--HHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 372 VDESVSFDDIG-GLSEYI--DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 372 ~~~~~~~~~l~-G~e~~k--~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
..+..+|++++ |-.+.. ..+..+...+ + ..++++||||+|||||+|++++|+++........+++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 45788999954 654432 2333332211 1 2356999999999999999999999876544566777
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+++..++..+.......-..-|.......+.||+|||++.+.+. ......|+..++.+...+..+||++..
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~---------~~~q~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK---------TGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc---------HHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 77777776654332211111233333345779999999988642 112234555555444455667776666
Q ss_pred chhh---hhhhhcCCCCc--cccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 529 RVDA---IDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 529 ~~~~---Ld~aL~r~gRf--~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|.. +.+.|.+ || ..++.|.+|+.+.|..||+..+......++.++++.||....| +.+.|..++......+
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 6665 5567777 77 4567899999999999999999888888899999999998876 6677777777665555
Q ss_pred HHh
Q 003859 604 FRE 606 (791)
Q Consensus 604 ~~~ 606 (791)
...
T Consensus 314 ~~~ 316 (440)
T PRK14088 314 ETT 316 (440)
T ss_pred HHh
Confidence 443
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.4e-15 Score=174.16 Aligned_cols=192 Identities=21% Similarity=0.221 Sum_probs=142.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|++|+|++.++..|+.++..- +.+..+||+||+|||||++|++||+.+.....
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 4678999999999999999887651 33456799999999999999999999864310
Q ss_pred --------ceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 443 --------~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
...++.+++... .....++.+...+. .....|+||||+|.| ....++.||.
T Consensus 79 C~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLK 141 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLK 141 (944)
T ss_pred HHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHH
Confidence 111222322210 11122344443332 233469999999988 4567888999
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..|.+.|++ || ..+.|..++.++....|+..+....+..+.+.+..|+..+.| +++
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 45667777778888889999998 88 579999999999999999988877777888888888888776 567
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 7777777666
No 79
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7.2e-15 Score=163.20 Aligned_cols=192 Identities=20% Similarity=0.195 Sum_probs=140.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++... ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4678999999999999999887551 3455689999999999999999999985221
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++... .....++.++..+.. ....|+||||+|.+. ...++.|+.
T Consensus 79 c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk 141 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLK 141 (363)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHH
Confidence 1122333333210 112234455444332 224599999999873 345567888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.++. ....+.+|++|+.++.+.+.+.+ |+ ..+.|++|+.++...+|+..+...+...+.+.+..++..+.| +++
T Consensus 142 ~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34566677777778889999988 88 478999999999999999999888877888888888888876 677
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
++.+++..++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 80
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.64 E-value=2.1e-14 Score=159.97 Aligned_cols=230 Identities=22% Similarity=0.217 Sum_probs=152.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC----CceEEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG----QKVSFYMR 449 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~----~~~~~~~i 449 (791)
+....+.++|.++.++.|..++...+. + ..+.+++|+||||||||+++++++..+.... ..+.++.+
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 455567899999999999998754221 1 3456799999999999999999999875432 22677777
Q ss_pred echhhhh------hhHhH--------------HHHHHHHHHHHHH-hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHH
Q 003859 450 KGADVLS------KWVGE--------------AERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (791)
Q Consensus 450 ~~~~~~~------~~~g~--------------~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~L 508 (791)
+|....+ ..... ....+..++.... ...+.||+|||+|.|... ...++..|
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l 152 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQL 152 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhH
Confidence 7743221 11111 1222344444443 244779999999999721 12355556
Q ss_pred HHHHhcc-CCCCcEEEeccCCchh---hhhhhhcCCCCcc-ccccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHH
Q 003859 509 LALMDGL-DSRGQVVLIGATNRVD---AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELA 581 (791)
Q Consensus 509 l~~l~~~-~~~~~vivIattn~~~---~Ld~aL~r~gRf~-~~I~~~~Pd~eer~~IL~~~l~~--~~~~~~~~~~~~LA 581 (791)
+.+.... ....++.+|+++|.+. .+++.+.+ ||. ..|.|++++.++..+||+..+.. .....+.+.+..++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 5552211 1235788888888875 47777777 774 57999999999999999998862 22234555544444
Q ss_pred H---HccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 582 A---SCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 582 ~---~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
. .+.|. .+.+..+|..|+..|..+.. ..|+.+|+..|+..+
T Consensus 231 ~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~----------------~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHGD-ARKAIDLLRVAGEIAEREGA----------------ERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHHHHHH
Confidence 3 44453 45556678888877766432 248899999888766
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1e-14 Score=166.42 Aligned_cols=195 Identities=20% Similarity=0.262 Sum_probs=147.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++++|++.++..|...+.. -..+.++||+||+|||||++|+++|+.+....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 577899999999999999887654 14467899999999999999999999985421
Q ss_pred -----------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHHH
Q 003859 442 -----------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (791)
Q Consensus 442 -----------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~ 506 (791)
.+..++.+++..- .....++.+++.+... ...||||||+|.|. ...++
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~------~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASK------TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCC------CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHH
Confidence 1122333332210 1234456666665432 34699999999883 34567
Q ss_pred HHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 003859 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (791)
Q Consensus 507 ~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G 586 (791)
.|+..|+. ....+++|++|+.+..+++.+.+ |+ ..+.|..++.++...+|+..+...+...+.+.+..|+..+.|
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888884 45577777778888899999988 88 478999999999999999999988888888888889988876
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003859 587 YCGADLKALCTEAAIRA 603 (791)
Q Consensus 587 ~s~~di~~l~~~A~~~a 603 (791)
+.+++.+++..++..+
T Consensus 222 -slR~al~~Ldkai~~~ 237 (507)
T PRK06645 222 -SARDAVSILDQAASMS 237 (507)
T ss_pred -CHHHHHHHHHHHHHhh
Confidence 7788888888776543
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=8.2e-15 Score=170.53 Aligned_cols=192 Identities=20% Similarity=0.221 Sum_probs=142.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|...+..- ..+..+||+||+|||||++|+.||+.+....
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 4678999999999999999887651 3345689999999999999999999986531
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++..- . ....++.+...+. .+...|+||||+|.| ....++.||.
T Consensus 79 C~~i~~g~~~D~ieidaas~--~----~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASR--T----KVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeeccccc--C----CHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHHH
Confidence 1112333443321 0 1223444444332 234569999999988 3567888999
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..|.+.|++ || ..+.|..++.++....|+.++...++..+...+..|+..+.| +.+
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9994 45677888888888999999998 87 689999999999999999998877777888888888888776 566
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
++.+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 6667776654
No 83
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.4e-16 Score=157.13 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=99.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHH----HHH
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGL----QFY 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~----~~~ 727 (791)
|.-++.+||||+.++|++++.+.. |+.+++.|...|+. ++.|++|||+||||||+||++.| +.|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvEL---PLthPE~YeemGik---------pPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVEL---PLTHPEYYEEMGIK---------PPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcC---CCCCHHHHHHcCCC---------CCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 667899999999999999999988 99999999999775 35599999999999998887777 456
Q ss_pred cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccccccc
Q 003859 728 MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSS 776 (791)
Q Consensus 728 ~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~ 776 (791)
+-+.+..|+..+. .+++++|.-|...+|+||||||||++...|-.++++
T Consensus 248 lRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg 300 (440)
T KOG0726|consen 248 LRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300 (440)
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc
Confidence 7778888888776 899999999999999999999999999887777664
No 84
>PRK08727 hypothetical protein; Validated
Probab=99.62 E-value=4.7e-14 Score=147.09 Aligned_cols=199 Identities=22% Similarity=0.240 Sum_probs=129.2
Q ss_pred CcccCCCCCCCcc-CCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 369 PLQVDESVSFDDI-GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 369 ~~~~~~~~~~~~l-~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
++...+..+|+++ +|..+....+...... .....++|+||+|||||+|++++++.+...+..+.|+
T Consensus 9 ~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 9 ALRYPSDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred cCCCCCcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4455678899995 5555555544332211 1234599999999999999999999988777666665
Q ss_pred EEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 448 ~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
.+ ..+. ..+..++... ....+|+|||++.+.... .....|+.+++.....+.-+|+.+.
T Consensus 76 ~~--~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~---------~~~~~lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 76 PL--QAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQR---------EDEVALFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred eH--HHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHcCCeEEEECC
Confidence 42 2222 1222333333 234699999999886421 1122344444443333333555455
Q ss_pred Cchhhh---hhhhcCCCCc--cccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 528 NRVDAI---DGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 528 n~~~~L---d~aL~r~gRf--~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|..+ ++.|.+ || ..++.|++|+.+++..||+.++...++.++.+.+..|+..+.| ..+.+.+++......
T Consensus 135 ~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~ 211 (233)
T PRK08727 135 QMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRE 211 (233)
T ss_pred CChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 566654 688988 86 5678999999999999999988777888999999999999875 334444445544433
Q ss_pred HH
Q 003859 603 AF 604 (791)
Q Consensus 603 a~ 604 (791)
+.
T Consensus 212 ~~ 213 (233)
T PRK08727 212 SL 213 (233)
T ss_pred HH
Confidence 33
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=164.96 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=148.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.+++.|..++.. | ..+.++||+||+|+|||++|+.+|+.+...
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 467899999999999999887755 1 456789999999999999999999977422
Q ss_pred ------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 441 ------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
+.+..++.+++++.. ....++.+++.+.. ....|+||||+|.|. ...++.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHH
Confidence 233455666654321 12345555555542 234699999999883 346778888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|.+|+.+..+.+.+++ |+. .+.|..++.++...+|...+...+..++.+.+..|+..+.| +.+
T Consensus 139 ~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 45567788888888889999998 884 69999999999999999999998888999998888888865 777
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..++.
T Consensus 213 ~alslLdqli~ 223 (491)
T PRK14964 213 NALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 86
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-16 Score=159.23 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=91.0
Q ss_pred CcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHH
Q 003859 646 GATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQ 725 (791)
Q Consensus 646 ~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~ 725 (791)
.+..+.|+|.|.++.||+...+.+++.+-. |++.|..|..- .++-.||||||||||||+.||++.+.
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVIL---PIKFPqlFtGk----------R~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVIL---PIKFPQLFTGK----------RKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheee---cccchhhhcCC----------CCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 456677999999999998888888877544 88888776653 22233999999999999988877775
Q ss_pred H----HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccccc
Q 003859 726 F----YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYH 774 (791)
Q Consensus 726 ~----~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~ 774 (791)
. ||.+....|....+ .++.++|.-|+..+|+||||||||++...+++.-
T Consensus 189 EAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE 245 (439)
T KOG0739|consen 189 EANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE 245 (439)
T ss_pred hcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc
Confidence 3 55556566655444 7788899999999999999999999998887643
No 87
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=3.9e-14 Score=162.74 Aligned_cols=211 Identities=15% Similarity=0.164 Sum_probs=142.9
Q ss_pred cCCCCCCCccC-CcHHH--HHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 372 VDESVSFDDIG-GLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 372 ~~~~~~~~~l~-G~e~~--k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
..+..+|++++ |-.+. ...+..++.. .+ ...+.++|||++|||||+|+++||+.+........+++
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Y 349 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEA----------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRY 349 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHHhC----------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34678999954 55443 3333333322 11 12345999999999999999999999875433456667
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+++..++..+...........|... ...+.|||||||+.+..+. .....|+.+++.+...++.+||++..
T Consensus 350 itaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke---------~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 350 VSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE---------STQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred eeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH---------HHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 7777777666544333222234322 2346799999999886431 22234555555554455555554444
Q ss_pred chh---hhhhhhcCCCCc--cccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 529 RVD---AIDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 529 ~~~---~Ld~aL~r~gRf--~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|. .+++.|.+ || ..++.|..|+.+.|.+||+..+....+.++.++++.||.+..+ +.+.|..++......+
T Consensus 420 ~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 420 PPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred ChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 444 46788988 87 5667999999999999999999999999999999999998875 5677777777665555
Q ss_pred HHh
Q 003859 604 FRE 606 (791)
Q Consensus 604 ~~~ 606 (791)
...
T Consensus 497 ~~~ 499 (617)
T PRK14086 497 SLN 499 (617)
T ss_pred Hhh
Confidence 443
No 88
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.62 E-value=6e-15 Score=170.94 Aligned_cols=216 Identities=23% Similarity=0.222 Sum_probs=152.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYM 448 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~ 448 (791)
.+.+|++|+|++..++.|+..+.. ..+.+|||+||||||||++|+++++.+.... ....|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 567899999999999999865432 3456899999999999999999998764321 1357788
Q ss_pred Eechhh-------hhhhHhHHHHH----------------HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHH
Q 003859 449 RKGADV-------LSKWVGEAERQ----------------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (791)
Q Consensus 449 i~~~~~-------~~~~~g~~~~~----------------l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~ 505 (791)
++|... ....++..... ...++. .....+|||||++.|- ...+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC-----------HHHH
Confidence 877531 11111100000 000111 2234599999999884 4566
Q ss_pred HHHHHHHhccC---------------------------CCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHH
Q 003859 506 STLLALMDGLD---------------------------SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARA 558 (791)
Q Consensus 506 ~~Ll~~l~~~~---------------------------~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~ 558 (791)
+.|+..|+.-. ..+-.+|++||+.++.|++++++ ||. .|.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 67777665310 01124555667889999999998 884 6889999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 559 EILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 559 ~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
.|++..+......++.+.++.|+..+. +++++.++|+.|+..|..+.. ..|+.+|+..++.
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~----------------~~It~~dI~~vl~ 330 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGR----------------KRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCC----------------cEEcHHHHHHHhC
Confidence 999999998888888888887777654 789999999999887765432 2477788887775
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=1.3e-14 Score=158.60 Aligned_cols=193 Identities=19% Similarity=0.155 Sum_probs=136.2
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
...+.+|++|+|+++++..|+.++.. ....++|||||||||||++|+++|+++....+...++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 34678999999999999999887654 12246999999999999999999999854444445666666
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++..+. ......+.. |.... .....||||||+|.|. ...++.|+..|+.+. ..+.+|.++
T Consensus 73 sd~~~~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~--~~t~~il~~ 136 (319)
T PLN03025 73 SDDRGI--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYS--NTTRFALAC 136 (319)
T ss_pred cccccH--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhccc--CCceEEEEe
Confidence 543221 111111111 11111 1235699999999884 234566777777432 334566677
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
|....+.++|++ |+ ..+.|+.|+.++...+|+..+...+..++.+.+..|+..+.| ..+.+.+.++
T Consensus 137 n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 137 NTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 777888889988 87 479999999999999999999988888899998999988776 3333334343
No 90
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.62 E-value=2.4e-14 Score=157.50 Aligned_cols=192 Identities=20% Similarity=0.193 Sum_probs=132.0
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..+.+|++|+|++.+++.|..++.. ....++||+||||||||++|+++|+.+........++.+++.
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 3567899999999999999887754 122369999999999999999999998654434456667766
Q ss_pred hhhhhh-------------HhH-------HHHHHHHHHHHHHh-----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHH
Q 003859 453 DVLSKW-------------VGE-------AERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVST 507 (791)
Q Consensus 453 ~~~~~~-------------~g~-------~~~~l~~lf~~a~~-----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~ 507 (791)
++.... .+. ....++.+...... ..+.||||||+|.+. ......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~ 144 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQA 144 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHH
Confidence 543211 011 11223333333222 224599999999773 223445
Q ss_pred HHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC
Q 003859 508 LLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (791)
Q Consensus 508 Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~ 587 (791)
|+.+++.... .+.+|.+++.+..+.+.|.+ |+ ..+.|.+|+.++...+|+..+...+..++.+.+..|+..+.|
T Consensus 145 L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 6666765433 23445555556677778877 76 468999999999999999999988888899988999988744
Q ss_pred CHHHHHH
Q 003859 588 CGADLKA 594 (791)
Q Consensus 588 s~~di~~ 594 (791)
+.+.+.+
T Consensus 219 dlr~l~~ 225 (337)
T PRK12402 219 DLRKAIL 225 (337)
T ss_pred CHHHHHH
Confidence 3344333
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=3.8e-14 Score=159.53 Aligned_cols=232 Identities=19% Similarity=0.191 Sum_probs=156.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+....+.++|.++.++.|...+...+. + ..+.+++|+||||||||++++.+++.+......+.++.+++..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 445667899999999999888754211 1 3456799999999999999999999986655457777777743
Q ss_pred hh------hh----hHh--------HHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc
Q 003859 454 VL------SK----WVG--------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (791)
Q Consensus 454 ~~------~~----~~g--------~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~ 514 (791)
.. .. ..+ .....+..++..... ..+.||+|||+|.|.... ...++..|+.++..
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEE 168 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhc
Confidence 21 11 111 112223333333332 346899999999986211 23466777776664
Q ss_pred cCCCCcEEEeccCCchh---hhhhhhcCCCCcc-ccccCCCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHccCC-
Q 003859 515 LDSRGQVVLIGATNRVD---AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKW--KQPPSRELKSELAASCVGY- 587 (791)
Q Consensus 515 ~~~~~~vivIattn~~~---~Ld~aL~r~gRf~-~~I~~~~Pd~eer~~IL~~~l~~~--~~~~~~~~~~~LA~~t~G~- 587 (791)
.. ..++.||+++|... .+++.+.+ ||. ..|.|++++.++..+||+..+..- ....+.+.++.++..+.+.
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 43 23677888877653 46677766 663 568999999999999999887542 2345677777888777442
Q ss_pred -CHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 588 -CGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 588 -s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
..+.+..+|..|+..|..+.. ..|+.+|+..|+..+.
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~----------------~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGS----------------RKVTEEDVRKAYEKSE 283 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHHH
Confidence 234555777888777766432 2588999998888764
No 92
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-15 Score=152.57 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=96.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----H
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----Y 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~ 727 (791)
|.-++..+|||..+++++++.|.. |+++|++|..+|+. .+.|+|||||||||||++|.+.+.. |
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeL---PvKHPELF~aLGIa---------QPKGvlLygppgtGktLlaraVahht~c~f 209 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIEL---PVKHPELFEALGIA---------QPKGVLLYGPPGTGKTLLARAVAHHTDCTF 209 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhc---cccCHHHHHhcCCC---------CCcceEEecCCCCchhHHHHHHHhhcceEE
Confidence 567889999999999999999998 99999999999886 2559999999999999666665554 3
Q ss_pred cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccccccc
Q 003859 728 MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSS 776 (791)
Q Consensus 728 ~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~ 776 (791)
.-+.+..+...++ ++++++|.-|+.++|+|||+||||++...+.+++.+
T Consensus 210 irvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g 262 (404)
T KOG0728|consen 210 IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG 262 (404)
T ss_pred EEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC
Confidence 4457777776664 889999999999999999999999999988877665
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.61 E-value=7.1e-15 Score=152.06 Aligned_cols=190 Identities=22% Similarity=0.188 Sum_probs=140.4
Q ss_pred CcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCceEEE
Q 003859 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFY 447 (791)
Q Consensus 369 ~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~ 447 (791)
+.+...+.+|++++|++.+++.|+..+.. ....++|||||||||||+.|+++|+++.. ......+.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 34455678999999999999999998754 23357999999999999999999999964 23334444
Q ss_pred EEechhhhhhhHh-HHHHHHHHHHHHHH--h---cCC-eEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc
Q 003859 448 MRKGADVLSKWVG-EAERQLKLLFEEAQ--R---NQP-SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (791)
Q Consensus 448 ~i~~~~~~~~~~g-~~~~~l~~lf~~a~--~---~~p-~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~ 520 (791)
..+.++..+..+. +.......+..... . ++| -||+|||+|.| ....+..|...|+.+ ...
T Consensus 93 ~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~--s~~ 159 (346)
T KOG0989|consen 93 ELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDF--SRT 159 (346)
T ss_pred hhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhcc--ccc
Confidence 4444444332211 11111111111110 1 112 59999999988 456778889999853 456
Q ss_pred EEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC
Q 003859 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (791)
Q Consensus 521 vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~ 587 (791)
+.+|..||.++.|+..+.+ |+. .+.|+....+.....|+.++...++..+.+.+..||..+.|-
T Consensus 160 trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 7888889999999999998 996 588999999999999999999999999999999999988873
No 94
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.4e-16 Score=164.05 Aligned_cols=125 Identities=11% Similarity=-0.013 Sum_probs=95.9
Q ss_pred cccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH
Q 003859 647 ATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 647 ~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
+....+++.|++|.||.+..+-+.+++-. |+..|+-|..+ +++=.|+|++||||||||+||++++..
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvl---Pi~mPe~F~Gi----------rrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVL---PIWMPEFFKGI----------RRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhh---hhhhHHHHhhc----------ccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 33445889999999998777777777555 88888766653 122229999999999999766666653
Q ss_pred ----HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccccccccccccccccc
Q 003859 727 ----YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFGGRTHMNS 786 (791)
Q Consensus 727 ----~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~~~~~~~~ 786 (791)
||++....+...+. .+++-+|.-|+..+|++|||||||+|..+|..+ +.|+.+||.-|
T Consensus 269 c~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKs 334 (491)
T KOG0738|consen 269 CGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKS 334 (491)
T ss_pred hcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHH
Confidence 56666666655553 667778888999999999999999999999766 89999998654
No 95
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.60 E-value=3.9e-14 Score=164.21 Aligned_cols=226 Identities=17% Similarity=0.190 Sum_probs=151.4
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (791)
....+.|+|+++.++.|..+|...+. +..+...++|+|+||||||++++.++.++... ...+.++.+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 34446899999999999998865332 11233445799999999999999999888432 223778888
Q ss_pred echhhhhh------hH----------h-HHHHHHHHHHHHHHh--cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 450 KGADVLSK------WV----------G-EAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 450 ~~~~~~~~------~~----------g-~~~~~l~~lf~~a~~--~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
+|..+... .. + .....+..+|..... ....||||||||.|... .+.++..|+.
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR 894 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFD 894 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHH
Confidence 88432211 10 0 122345566665422 23569999999999742 2456666666
Q ss_pred HHhccCCCCcEEEeccCCc---hhhhhhhhcCCCCccc-cccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 003859 511 LMDGLDSRGQVVLIGATNR---VDAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~---~~~Ld~aL~r~gRf~~-~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G 586 (791)
+.. .....++||+++|. +..|++.+.+ ||.. .|.|++++.+++.+||+..+......++.+++..+|..++.
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 654 23567999999986 4557788887 7754 48899999999999999998865556788888877775553
Q ss_pred CCHHHHHHH---HHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 587 YCGADLKAL---CTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 587 ~s~~di~~l---~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
. .+|++.+ |..|+..+ ....|+.+|+..|+..+.
T Consensus 971 ~-SGDARKALDILRrAgEik-------------------egskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 971 V-SGDIRKALQICRKAFENK-------------------RGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred c-CCHHHHHHHHHHHHHhhc-------------------CCCccCHHHHHHHHHHHH
Confidence 3 2455544 44443210 011478888888876553
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.60 E-value=7.1e-14 Score=144.90 Aligned_cols=199 Identities=20% Similarity=0.241 Sum_probs=135.0
Q ss_pred ccCCCCCCCccC--CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 371 QVDESVSFDDIG--GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 371 ~~~~~~~~~~l~--G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
......+|++++ +...+++.|+.++.. ..+.+++|+||+|||||++|+++++.+...+. .++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~--~~~~ 71 (226)
T TIGR03420 7 GLPDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIY 71 (226)
T ss_pred CCCCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEE
Confidence 344667888875 466677778776532 34678999999999999999999999875543 4556
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+++..+.... ..++.... .+.+|||||+|.+... ......|+.+++.....+..+||.++.
T Consensus 72 i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 72 LPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred EeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 6666654321 12222221 2359999999987531 011234444444332333445555554
Q ss_pred chhhhh---hhhcCCCCc--cccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 529 RVDAID---GALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 529 ~~~~Ld---~aL~r~gRf--~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.+..+. +.|.+ || ...|.|++|+.+++..+++.++......++.+.+..|+.. -+-+.+++.++++.+...+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 444432 56666 65 4679999999999999999988877888899998889986 5568999999998877655
Q ss_pred HHh
Q 003859 604 FRE 606 (791)
Q Consensus 604 ~~~ 606 (791)
...
T Consensus 210 ~~~ 212 (226)
T TIGR03420 210 LAA 212 (226)
T ss_pred HHh
Confidence 554
No 97
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.6e-14 Score=171.50 Aligned_cols=196 Identities=19% Similarity=0.176 Sum_probs=141.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++..- ..+..+||+||+|||||++|+.||+.|....
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 5678999999999999999987641 3345689999999999999999999985321
Q ss_pred ---------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 442 ---------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 442 ---------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
....++.+++.... .+.+....+..++.........||||||+|.|. ....+.||+.|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaLLK~L 144 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNALLKIV 144 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHHHHHH
Confidence 12233444432211 112222222222222223345699999999883 45677899999
Q ss_pred hccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH
Q 003859 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (791)
Q Consensus 513 ~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di 592 (791)
+. ....++||++|+.++.|.+.|++ |+ .+|.|..++.++...+|..++...++.++...+..|+..+.| +.+++
T Consensus 145 EE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~A 218 (824)
T PRK07764 145 EE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDS 218 (824)
T ss_pred hC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 44577888788888889999988 88 478999999999999999999888888888888778777766 66777
Q ss_pred HHHHHHHH
Q 003859 593 KALCTEAA 600 (791)
Q Consensus 593 ~~l~~~A~ 600 (791)
.+++...+
T Consensus 219 l~eLEKLi 226 (824)
T PRK07764 219 LSVLDQLL 226 (824)
T ss_pred HHHHHHHH
Confidence 77776544
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=4e-14 Score=160.06 Aligned_cols=183 Identities=27% Similarity=0.342 Sum_probs=129.9
Q ss_pred CCCCCCccCCcHHHHHH---HHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 374 ESVSFDDIGGLSEYIDA---LKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~---L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+.+|++++|++.++.. |..++.. ....++||+||||||||++|++||+.+. ..|+.++
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~~~l~ 68 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATD-----APFEALS 68 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEe
Confidence 35689999999999776 7777644 2345899999999999999999999874 4556665
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+.... ...++.++..+. .....||||||+|.+. ...+..|+..++ .+.+++|++
T Consensus 69 a~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 69 AVTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVE----DGTITLIGA 126 (413)
T ss_pred ccccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhh----cCcEEEEEe
Confidence 54221 122334444432 2356799999999874 334556677666 356677765
Q ss_pred C--CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC--CC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 527 T--NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--KQ-PPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 527 t--n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~--~~-~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
| |....++++|++ || ..+.|++++.++...+|+..+... .. .++.+.+..|+..+.| ..+.+.+++..++
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5 334578999998 88 578999999999999999887653 22 6777888888888855 5556666666554
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.9e-14 Score=165.73 Aligned_cols=193 Identities=21% Similarity=0.237 Sum_probs=144.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|+.++..- ..+..+||+||+|||||++|++||+.+....
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 4678999999999999999987651 3456689999999999999999999986421
Q ss_pred ------------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHH
Q 003859 442 ------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (791)
Q Consensus 442 ------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~ 505 (791)
.+..++.++...- .....++.++..+... ...|+||||+|.|. ....
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~ 141 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAF 141 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHH
Confidence 1123344433221 1123455555554322 24599999999884 4456
Q ss_pred HHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 003859 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (791)
Q Consensus 506 ~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~ 585 (791)
+.|+..|+. ....+++|++|+.+..+.+.+++ |+ ..|.|..++.++....|+..+...++..+...+..|+..+.
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888884 45667777788888888888988 88 57999999999999999999988888888888888998887
Q ss_pred CCCHHHHHHHHHHHHH
Q 003859 586 GYCGADLKALCTEAAI 601 (791)
Q Consensus 586 G~s~~di~~l~~~A~~ 601 (791)
| +.+++.+++..+..
T Consensus 217 G-slR~al~lLdq~ia 231 (618)
T PRK14951 217 G-SMRDALSLTDQAIA 231 (618)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 67777777765553
No 100
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4.2e-14 Score=164.58 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=146.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+..+... ..+..+|||||+|||||++|+.+|+.+....
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 4678999999999999999987651 3456789999999999999999999985321
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++.. ......++.+...+.. ....|+||||+|.|. ...++.|+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 123344444321 1123345566665543 234699999999884 345678888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..|++.+++ |+. .+.|..|+..+...+|+..+...++.++...+..||..+.| +.+
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 45567777778888999999988 885 68899999999999999999988888888888888888876 677
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..+..
T Consensus 216 ~al~~Ldq~~~ 226 (559)
T PRK05563 216 DALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.59 E-value=1.8e-14 Score=151.15 Aligned_cols=213 Identities=25% Similarity=0.317 Sum_probs=141.5
Q ss_pred CCCCCCccCCcHHHHHH---HHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 374 ESVSFDDIGGLSEYIDA---LKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~---L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+.++++.+|++..+.+ |+.+|.. ..-.+++||||||||||+||+.|+....... ..|+.++
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelS 197 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELS 197 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEe
Confidence 35677888888776654 2222222 2335799999999999999999998775432 4566665
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHh-----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~-----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa 525 (791)
+... ....++.+|+.++. ....||||||||.+- ...+..||-.++ .+.|++|+
T Consensus 198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD~fLP~VE----~G~I~lIG 255 (554)
T KOG2028|consen 198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQDTFLPHVE----NGDITLIG 255 (554)
T ss_pred cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhhcccceec----cCceEEEe
Confidence 5432 23456777777654 236799999999873 334455665555 67888898
Q ss_pred cCC--chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----------CCC---CCCHHHHHHHHHHccCCCHH
Q 003859 526 ATN--RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----------WKQ---PPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 526 ttn--~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~----------~~~---~~~~~~~~~LA~~t~G~s~~ 590 (791)
+|+ ..-.|+.+|++ ||. ++.+.....+....||...... +.. .++..+++.||..++|-...
T Consensus 256 ATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 773 34468999999 884 6778888899999999874431 111 24566788999999997777
Q ss_pred HHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 591 DLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 591 di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
.|..|--.+.+.+.+... .....|+.+|+..+|..-
T Consensus 333 aLN~Lems~~m~~tr~g~-------------~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRSGQ-------------SSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHHHhhcCC-------------cccceecHHHHHHHHhhc
Confidence 766653333333333221 123458888888887654
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.7e-14 Score=162.74 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=142.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++... ..+..+||+||+|||||++|++||+.+....
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 4678999999999999999988651 3445689999999999999999999886321
Q ss_pred ---------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHH
Q 003859 442 ---------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (791)
Q Consensus 442 ---------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~L 508 (791)
....++.+++.... ....++.+...+. .....|+||||+|.|. ...++.|
T Consensus 76 C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NAL 138 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNAL 138 (584)
T ss_pred HHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHH
Confidence 12334444443211 1122333333332 2234599999999883 4467788
Q ss_pred HHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 003859 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (791)
Q Consensus 509 l~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s 588 (791)
+..|+. ....+++|++|+.+..|.+.|++ |+ ..+.|..++.++...+|..++...+..++...+..|+..+. -+
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gd 212 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GS 212 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 999984 45678888888888999999998 86 57999999999999999999998888888888777766555 46
Q ss_pred HHHHHHHHHHHHH
Q 003859 589 GADLKALCTEAAI 601 (791)
Q Consensus 589 ~~di~~l~~~A~~ 601 (791)
.+++.+++..++.
T Consensus 213 lR~aln~Ldql~~ 225 (584)
T PRK14952 213 PRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776543
No 103
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=9.4e-14 Score=144.36 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=139.6
Q ss_pred CcccCCCCCCCccC--CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEE
Q 003859 369 PLQVDESVSFDDIG--GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (791)
Q Consensus 369 ~~~~~~~~~~~~l~--G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (791)
++....+.+|++++ +...++..+..++.. .....+++|+||+|||||+||+++++.+...+..+.
T Consensus 8 ~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~- 74 (227)
T PRK08903 8 DLGPPPPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNAR- 74 (227)
T ss_pred CCCCCChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE-
Confidence 34445678899965 345566666655431 234568999999999999999999999865554444
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcE-EEec
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIG 525 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~v-ivIa 525 (791)
.+++..+... +. ......+|||||+|.+.. .....|+.+++.....+.. ++++
T Consensus 75 -~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~~~~~~~vl~~ 128 (227)
T PRK08903 75 -YLDAASPLLA------------FD--FDPEAELYAVDDVERLDD-----------AQQIALFNLFNRVRAHGQGALLVA 128 (227)
T ss_pred -EEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4444443211 11 122356999999997732 1233455555544444454 4444
Q ss_pred cCCchh--hhhhhhcCCCCc--cccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 003859 526 ATNRVD--AIDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 526 ttn~~~--~Ld~aL~r~gRf--~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~ 601 (791)
++..+. .+.+.|.+ || ...|.+++|+..++..+|..++...++.++.+.++.|+....| +.+++..+++....
T Consensus 129 ~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 129 GPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred CCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 443332 24566766 76 4689999999999999999988888888999999999996554 78888888887555
Q ss_pred HHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 602 RAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 602 ~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
.+..... .||...+.+++.
T Consensus 206 ~~~~~~~-----------------~i~~~~~~~~l~ 224 (227)
T PRK08903 206 YSLEQKR-----------------PVTLPLLREMLA 224 (227)
T ss_pred HHHHhCC-----------------CCCHHHHHHHHh
Confidence 5544332 377777777664
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.58 E-value=7.3e-14 Score=144.13 Aligned_cols=206 Identities=18% Similarity=0.226 Sum_probs=136.3
Q ss_pred CCCCCCCcc-CC--cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 373 DESVSFDDI-GG--LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 373 ~~~~~~~~l-~G--~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
.+..+|+++ +| ...+...+..+...+ + ...+.++||||+|+|||+|++++++++........++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 367899996 45 344455555544332 1 123469999999999999999999998765556677778
Q ss_pred echhhhhhhHhHHHHH-HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 450 KGADVLSKWVGEAERQ-LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 450 ~~~~~~~~~~g~~~~~-l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
++..+...+....... +..+.... ....+|+||+++.+.. .......|+.+++.+...++.+||++..
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC---------chHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 8888776654433321 22222222 2456999999998863 2344566667776666667777777766
Q ss_pred chhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 529 ~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|.. +.+.|.+ ||. .++.+..|+.+.|..||+..+...+..++.++++.|+....+ +.+.|..++......+
T Consensus 140 ~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 140 PPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp -TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred CCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 6654 5677877 874 478899999999999999999999999999999999988765 6778888777655443
No 105
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.9e-15 Score=150.09 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=99.7
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH---
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF--- 726 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~--- 726 (791)
+.|.+++.++||.+++++.+.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|++.+..
T Consensus 170 ekpdvty~dvggckeqieklrevve~---pll~perfv~lgid---------ppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVEL---PLLHPERFVNLGID---------PPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhc---cccCHHHHhhcCCC---------CCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 34889999999999999999988887 99999999999987 2449999999999999666666543
Q ss_pred -HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccccc-cccccccccc
Q 003859 727 -YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHS-SIFGGRTHMN 785 (791)
Q Consensus 727 -~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~-~~~~~~~~~~ 785 (791)
|.-+.+..|...++ ++++++|.-|+...-|||||||||.+..++-..+. +--++.|.|.
T Consensus 238 cfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtml 302 (435)
T KOG0729|consen 238 CFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTML 302 (435)
T ss_pred eEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHH
Confidence 45567777877765 78888999999999999999999999887765532 2333444443
No 106
>PRK04195 replication factor C large subunit; Provisional
Probab=99.58 E-value=3.9e-14 Score=163.18 Aligned_cols=192 Identities=22% Similarity=0.256 Sum_probs=136.3
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
....+.+|++|+|++.+++.|..++.... .| .++.++|||||||||||++|++||++++ ..++.++
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~-----~~~ieln 71 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYG-----WEVIELN 71 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEc
Confidence 34467889999999999999999886521 11 3467899999999999999999999984 5566666
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHh------cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEe
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQR------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLI 524 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~------~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivI 524 (791)
+++.... ..+..+...+.. ..+.||||||+|.|.... ....+..|+..++. ....||
T Consensus 72 asd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iI 134 (482)
T PRK04195 72 ASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPII 134 (482)
T ss_pred ccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEE
Confidence 6553321 112222222211 246799999999986421 11234556666662 234455
Q ss_pred ccCCchhhhhh-hhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 525 GATNRVDAIDG-ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 525 attn~~~~Ld~-aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
+++|.+..+.. .|++ ++ ..|.|+.|+..++..+|+.++...++.++...+..|+..+.| ||+.++....
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 67787777776 6665 55 579999999999999999999988888899999999998876 5555555443
No 107
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.6e-14 Score=160.53 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=139.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++... ..+..+|||||||||||++|+++|+.+...+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 5678999999999999999987651 3445579999999999999999999986421
Q ss_pred ------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHH
Q 003859 442 ------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (791)
Q Consensus 442 ------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~ 511 (791)
.+..++.+++.... ....++.+...+.. ..+.||||||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~~~------~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNN------SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 12234444443111 12233444333322 345699999998763 3456778888
Q ss_pred HhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHH
Q 003859 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (791)
Q Consensus 512 l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~d 591 (791)
|+. ....+++|.+|+.+..+.+.+.+ |+. .+.|..|+.++...+|+..+...+..++.+.+..|+..+.| ..+.
T Consensus 140 LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 34567777778888899999988 875 79999999999999999999988888888888888888876 4555
Q ss_pred HHHHHHHH
Q 003859 592 LKALCTEA 599 (791)
Q Consensus 592 i~~l~~~A 599 (791)
+.+++..+
T Consensus 214 aln~Lekl 221 (504)
T PRK14963 214 AESLLERL 221 (504)
T ss_pred HHHHHHHH
Confidence 55555554
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1e-13 Score=159.17 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=140.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|..++..- ..+..+||+||+|||||++|+.||+.+....
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4678999999999999999887651 3445689999999999999999999885311
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++.... ....++.++..+. .....||||||+|.|. ...++.|+.
T Consensus 79 C~~i~~~~~~dlieidaas~~------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRT------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeeccccc------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHH
Confidence 11233333332111 1122333433332 2335699999999873 456778899
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..+.+.|++ |+ ..+.|..++.++...+|...+...+...+...+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 34567777777778888888888 88 579999999999999999999888888888888888887754 667
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..++.
T Consensus 216 ~alnlLek~i~ 226 (546)
T PRK14957 216 DALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.57 E-value=9.8e-14 Score=153.92 Aligned_cols=193 Identities=22% Similarity=0.250 Sum_probs=141.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|...+... ..+..+|||||||+|||++|+++|+.+....
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 5678999999999999999887541 3456799999999999999999999985321
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
.+..++.+++... .....++.++..+... ...||+|||+|.+. ...++.|+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHH
Confidence 1223444443211 1122345555554432 24599999999773 335667788
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.++. ....+++|++|+.+..+.+.+.+ |+. .+.|++|+..+...++..++...+..++...+..|+..+.| +++
T Consensus 140 ~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 8874 34567777778888888899988 884 78999999999999999999888888888888888888766 566
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
.+.+.+..+..
T Consensus 214 ~a~~~lekl~~ 224 (355)
T TIGR02397 214 DALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHh
Confidence 66666665543
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.1e-14 Score=162.13 Aligned_cols=193 Identities=21% Similarity=0.205 Sum_probs=142.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+.+|+.+....
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4578999999999999999887651 3445689999999999999999999985321
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++..- .....++.++..+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~~~~~d~~ei~~~~~------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK 141 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASN------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLK 141 (527)
T ss_pred HHHHhcCCCCceeEeecccc------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHH
Confidence 1112333332210 122345556555532 224599999999883 345678888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..+.+.+++ || ..+.|..++.++....|...+...+...+...+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8885 44567777778888888888888 88 579999999999999999988877777888887888877765 677
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..|..
T Consensus 216 ~al~lldqai~ 226 (527)
T PRK14969 216 DALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 111
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=7.7e-14 Score=155.27 Aligned_cols=189 Identities=22% Similarity=0.274 Sum_probs=130.5
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC---------------
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--------------- 441 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--------------- 441 (791)
.|++|+|++.+++.|+.++.....+ +...+...+.++||+||+|+|||++|+++|+.+....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4889999999999999999875432 2223334577899999999999999999999874321
Q ss_pred -----CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 442 -----QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 442 -----~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
..+.++...+. . -....++.++..+.. ....|+||||+|.|. ....+.|+..|
T Consensus 80 ~~~~hpD~~~i~~~~~---~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~L 141 (394)
T PRK07940 80 LAGTHPDVRVVAPEGL---S----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAV 141 (394)
T ss_pred hcCCCCCEEEeccccc---c----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHh
Confidence 11112211111 0 112346666666543 234699999999884 33457788888
Q ss_pred hccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH
Q 003859 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (791)
Q Consensus 513 ~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di 592 (791)
+. ...++++|.+|+.++.|.+.+++ || ..|.|++|+.++..++|.... + .+...+..++..+.|..+..+
T Consensus 142 Ee--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 142 EE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred hc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHHHHHHHHHHcCCCHHHHH
Confidence 84 34445555566668999999998 98 489999999999888776322 2 345556678888888877666
Q ss_pred HHHH
Q 003859 593 KALC 596 (791)
Q Consensus 593 ~~l~ 596 (791)
..+.
T Consensus 212 ~l~~ 215 (394)
T PRK07940 212 RLAT 215 (394)
T ss_pred HHhc
Confidence 5543
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-13 Score=161.77 Aligned_cols=193 Identities=20% Similarity=0.192 Sum_probs=144.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|..++.. | ..+..+|||||+|+|||++|+++|+.+....
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 467899999999999999998765 1 3456789999999999999999999985321
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++... .....++.+...+... ...|+||||+|.|. ....+.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHH
Confidence 1223444443321 1123345555544322 23599999999883 445678899
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.++.|.+.|++ |+. .|.|..++..+....|...+...+..++.+.+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 45678888888889999999998 884 79999999999999999999888888899988888888887 556
Q ss_pred HHHHHHHHHHH
Q 003859 591 DLKALCTEAAI 601 (791)
Q Consensus 591 di~~l~~~A~~ 601 (791)
++.+++..+..
T Consensus 216 ~al~~Ldqlia 226 (576)
T PRK14965 216 DSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.4e-13 Score=161.05 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=141.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|++|+|++.+++.|+..+..- ..+..+|||||+|+|||++|+++|+.+.....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 5678999999999999999988651 34567899999999999999999998854211
Q ss_pred -----ceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHh
Q 003859 443 -----KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (791)
Q Consensus 443 -----~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~ 513 (791)
+..++.+++.. ......++.+...+.. ....|+||||+|.|. ...++.|+..|+
T Consensus 81 ~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLE 143 (725)
T PRK07133 81 ENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLE 143 (725)
T ss_pred HhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhh
Confidence 11112222210 0113345666655543 235699999999884 346778888888
Q ss_pred ccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHH
Q 003859 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLK 593 (791)
Q Consensus 514 ~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~ 593 (791)
. ....+++|++|+.++.|.+.|++ ||. .+.|.+|+.++...+|...+...++..+...+..||..+.| +.+++.
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 45677888888888999999998 885 79999999999999999998888888888877788877775 556666
Q ss_pred HHHHHHH
Q 003859 594 ALCTEAA 600 (791)
Q Consensus 594 ~l~~~A~ 600 (791)
.++..+.
T Consensus 218 slLekl~ 224 (725)
T PRK07133 218 SIAEQVS 224 (725)
T ss_pred HHHHHHH
Confidence 6666543
No 114
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5e-14 Score=160.01 Aligned_cols=208 Identities=21% Similarity=0.295 Sum_probs=143.5
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec-hhhh---
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-ADVL--- 455 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~-~~~~--- 455 (791)
+--|++++|+++.+++.--... +-....-+||+||||+|||+|++.||..+++.+.++.+--+.. +++-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4579999999999988652111 1122356899999999999999999999976543333211111 1221
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-------------CCCcEE
Q 003859 456 SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------------SRGQVV 522 (791)
Q Consensus 456 ~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------------~~~~vi 522 (791)
..|+|.....+-+-+..|....| |++|||||.+...-. ..-.+.||..|+.-+ .-+.|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-------GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-------GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-------CChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 35888888888888899988888 999999999974321 122345666665311 124799
Q ss_pred EeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc-----C-----CCCCCHHHHHHHHHHc---cCC--
Q 003859 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----W-----KQPPSRELKSELAASC---VGY-- 587 (791)
Q Consensus 523 vIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~-----~-----~~~~~~~~~~~LA~~t---~G~-- 587 (791)
+|+|+|..+.||.+|+. |+ .+|.+.-++.++..+|.+.|+-. . .+.++++.+..|.... +|.
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 99 48999999999999999977621 1 2344555555555432 221
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 003859 588 CGADLKALCTEAAIRAFR 605 (791)
Q Consensus 588 s~~di~~l~~~A~~~a~~ 605 (791)
--+.|..+|+.++..-+.
T Consensus 546 LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 546 LEREIAKICRKAAKKILL 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 125566677766655544
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.6e-13 Score=159.19 Aligned_cols=192 Identities=22% Similarity=0.269 Sum_probs=142.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|+..+..- ..+..+|||||+|+|||++|++||+.+....
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 4678999999999999999988651 3456799999999999999999999985421
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.+++..- .....++.+...+. .....|+||||+|.|. ...++.|+.
T Consensus 79 C~~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK 141 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLK 141 (563)
T ss_pred HHHHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHH
Confidence 1123333333210 11223444443332 2345699999999883 446778888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..|.++|++ |+. .+.|..++.++...+|+..+...+...+.+.+..||..+.| +.+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 45677887888888899999998 885 68999999999999999999888888889988888888776 677
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
++.+++..++
T Consensus 216 ~alslLdkli 225 (563)
T PRK06647 216 DAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.54 E-value=3e-13 Score=138.25 Aligned_cols=202 Identities=21% Similarity=0.286 Sum_probs=145.3
Q ss_pred CCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEE
Q 003859 367 IQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (791)
Q Consensus 367 ~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (791)
+.|+.....+.+++|+|.+.+++.|.+....++. | .+.+++||||++|||||++++++..++...+ +.+
T Consensus 15 l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRl 83 (249)
T PF05673_consen 15 LEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQG--LRL 83 (249)
T ss_pred EEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceE
Confidence 5567777899999999999999999887655322 2 5778999999999999999999999998776 666
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHH-hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--CCCcEEE
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--SRGQVVL 523 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~~~~viv 523 (791)
+.+....+.. +-.++...+ ...+.|||+|++- +. ....-...|..+|++-- ...+|+|
T Consensus 84 Iev~k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe--------~~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 84 IEVSKEDLGD---------LPELLDLLRDRPYKFILFCDDLS--FE--------EGDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred EEECHHHhcc---------HHHHHHHHhcCCCCEEEEecCCC--CC--------CCcHHHHHHHHHhcCccccCCCcEEE
Confidence 7766655432 334444444 3346799999973 21 12233456777777642 3568999
Q ss_pred eccCCchhhhhhh---------------------hcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH--
Q 003859 524 IGATNRVDAIDGA---------------------LRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSEL-- 580 (791)
Q Consensus 524 Iattn~~~~Ld~a---------------------L~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~L-- 580 (791)
.+|+|+-..++.. +.-..||..+|.|.+|+.++-.+|++.++..+++..+.+.+..-
T Consensus 145 yATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 145 YATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEAL 224 (249)
T ss_pred EEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999985443221 11123999999999999999999999999998888875443322
Q ss_pred --HHHccCCCHHHHHHHHHH
Q 003859 581 --AASCVGYCGADLKALCTE 598 (791)
Q Consensus 581 --A~~t~G~s~~di~~l~~~ 598 (791)
|..-.|.||+-..+.+..
T Consensus 225 ~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 225 QWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 334466788877776653
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.3e-13 Score=155.64 Aligned_cols=195 Identities=21% Similarity=0.174 Sum_probs=145.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.+++.|...+.. | ..+..+|||||+|+|||++|+++|+.+...
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 467899999999999999998755 1 345667999999999999999999998422
Q ss_pred ------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 441 ------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
+.+..++.+++..-. ....++.+...+.. ....|+||||+|.|. ...++.|+.
T Consensus 77 C~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK 139 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLK 139 (535)
T ss_pred HHHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 122344444433210 12334444444322 123599999999883 456778899
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+.. ...+++|.+|+.+..|.++|++ |+ ..+.|.+++.++....+...+...+...+.+.+..|+..+.| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 99854 4456667777778899999998 87 479999999999999999999888888888888888887776 778
Q ss_pred HHHHHHHHHHHHH
Q 003859 591 DLKALCTEAAIRA 603 (791)
Q Consensus 591 di~~l~~~A~~~a 603 (791)
++.+++..|+..+
T Consensus 214 ~alnlLdqai~~~ 226 (535)
T PRK08451 214 DTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHhc
Confidence 8888887766543
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.2e-13 Score=156.51 Aligned_cols=191 Identities=20% Similarity=0.205 Sum_probs=140.3
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|++|+|++.+++.|..++.. -..+.++||+||+|+|||++|+++|+.+....+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 567899999999999999888754 134567999999999999999999999853221
Q ss_pred --------ceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 443 --------~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
+..++.+++... .....++.++..+.. ....|++|||+|.|. ....+.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 123333333211 112234445444332 224599999999873 234577888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|++|+.+..|.+.+++ ||. .+.|..|+..+...+|...+...+...+.+.+..|+..+.| +.+
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8884 44567888888888999999998 885 79999999999999999999888877888888888888776 566
Q ss_pred HHHHHHHHH
Q 003859 591 DLKALCTEA 599 (791)
Q Consensus 591 di~~l~~~A 599 (791)
++.+++..+
T Consensus 216 ~AlnlLekL 224 (605)
T PRK05896 216 DGLSILDQL 224 (605)
T ss_pred HHHHHHHHH
Confidence 666666653
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.7e-13 Score=158.20 Aligned_cols=193 Identities=20% Similarity=0.197 Sum_probs=137.5
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.+++.|..++..- +.+..+||+||+|||||++|+.||+.+...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 5678999999999999999987551 335689999999999999999999998542
Q ss_pred ------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHH-HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHh
Q 003859 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (791)
Q Consensus 441 ------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a-~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~ 513 (791)
+.+..++.+++..- ..+.... .+...+... ......||||||+|.|. ...++.|+..|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~--~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~LE 144 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN--RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKTLE 144 (624)
T ss_pred HHHHhcCCCCceEEEecccc--cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHHhh
Confidence 11223444443211 1111111 122222221 12335699999999883 445678888888
Q ss_pred ccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHH
Q 003859 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLK 593 (791)
Q Consensus 514 ~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~ 593 (791)
. ....+++|++|+.+..+.+.|++ |+. .|.|+.++.++...+|+..+......++.+.+..|+..+.| +.+++.
T Consensus 145 E--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al 218 (624)
T PRK14959 145 E--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSM 218 (624)
T ss_pred c--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 34568888888888888888888 885 68999999999999999988888887888888888887776 344444
Q ss_pred HHHHH
Q 003859 594 ALCTE 598 (791)
Q Consensus 594 ~l~~~ 598 (791)
+++..
T Consensus 219 ~lLeq 223 (624)
T PRK14959 219 SLLGQ 223 (624)
T ss_pred HHHHH
Confidence 44443
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.2e-13 Score=155.69 Aligned_cols=192 Identities=22% Similarity=0.234 Sum_probs=138.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|+..+..- ..+..+|||||+|+|||++|+.+|..+....
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 4678999999999999999988551 3445688999999999999999999985311
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
....++.++++.- .....++.+...+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 c~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk 141 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLK 141 (486)
T ss_pred HHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHH
Confidence 0112223322110 112234444444432 235699999999873 334567888
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.|+. ....+++|.+|+.++.+.+++.+ |+. .|.|.+|+.++...+|..++...+...+.+.+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8874 34456666667778888889888 885 69999999999999999999988888888888888887775 566
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
++.+++..+.
T Consensus 216 ~al~~Ldkl~ 225 (486)
T PRK14953 216 DAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 121
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.54 E-value=2.5e-13 Score=148.26 Aligned_cols=216 Identities=23% Similarity=0.182 Sum_probs=145.2
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
...+.+|++++|.+.+++.|..++.. ....++||+||||||||++++++++.+....+...++.+++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 34568999999999999999988754 12236899999999999999999999865555556666654
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHh--cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~--~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
...... ......+..+...... ..+.||||||+|.+. ......|+..++.... .+.+|.++|.
T Consensus 77 ~~~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~~~--~~~lIl~~~~ 141 (319)
T PRK00440 77 SDERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMYSQ--NTRFILSCNY 141 (319)
T ss_pred ccccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcCCC--CCeEEEEeCC
Confidence 432211 0111111111111101 234599999999884 2234567777775433 3455556676
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
+..+.+.+.+ |+. .+.|++++.++...+++.++...+..++.+.+..|+..+.| ..+.+.+++..++.. .
T Consensus 142 ~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~----~-- 211 (319)
T PRK00440 142 SSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT----G-- 211 (319)
T ss_pred ccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc----C--
Confidence 6777777877 775 58999999999999999999988888899999999988776 344444444433321 0
Q ss_pred CccCCCccccccccccceeHHHHHHHhcccc
Q 003859 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 610 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
..||.+++..++....
T Consensus 212 ---------------~~it~~~v~~~~~~~~ 227 (319)
T PRK00440 212 ---------------KEVTEEAVYKITGTAR 227 (319)
T ss_pred ---------------CCCCHHHHHHHhCCCC
Confidence 1378888877765443
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=1.2e-12 Score=136.50 Aligned_cols=204 Identities=15% Similarity=0.166 Sum_probs=134.1
Q ss_pred CcccCCCCCCCccC-CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 369 PLQVDESVSFDDIG-GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 369 ~~~~~~~~~~~~l~-G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
++...+..+|++++ |.. ..+..++..+.. ..+--....++||||+|||||+|++++|+++...+..+.|
T Consensus 9 ~~~~~~~~tfdnF~~~~~---~~a~~~~~~~~~------~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y- 78 (234)
T PRK05642 9 GVRLRDDATFANYYPGAN---AAALGYVERLCE------ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVY- 78 (234)
T ss_pred CCCCCCcccccccCcCCh---HHHHHHHHHHhh------ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-
Confidence 45556788999965 432 223333322110 0011123679999999999999999999988665555544
Q ss_pred EEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 448 ~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++...+.... ..++..... ..+|+|||++.+.+. ......|+.+++.+...+..+||+++
T Consensus 79 -~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 79 -LPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK---------ADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred -eeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC---------hHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4455554321 122222222 249999999977532 12234566666665566677888877
Q ss_pred Cchhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 528 n~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|.. +.+.|.+ ||. .++.+..|+.+++..|++..+...++.++.+.++.|+....+ +.+.+..++......
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQA 215 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66654 3688888 883 567789999999999999777777788899999999998876 667777777655544
Q ss_pred HHH
Q 003859 603 AFR 605 (791)
Q Consensus 603 a~~ 605 (791)
++.
T Consensus 216 ~l~ 218 (234)
T PRK05642 216 SLQ 218 (234)
T ss_pred HHH
Confidence 444
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=4.9e-13 Score=151.42 Aligned_cols=207 Identities=16% Similarity=0.182 Sum_probs=133.8
Q ss_pred cCCCCCCCccC-CcHHHH--HHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 372 VDESVSFDDIG-GLSEYI--DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 372 ~~~~~~~~~l~-G~e~~k--~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
..+..+|++++ |-.+.. ..+..+...+ ...+-...++++||||+|+|||+|++++++.+...+..+ ++
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~-------~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v--~y 174 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVS-------EQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKI--LY 174 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhcc-------ccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 45788999954 654443 3444433221 000001235799999999999999999999987655444 45
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
++...+...+.......-...|.... ....||+|||++.+.+.. .....|+..++.+...+..+||+++.
T Consensus 175 i~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 175 VRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred eeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 55555554433322211112233322 345699999999886421 12334444444333344556666666
Q ss_pred chhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 529 ~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
.|.. +++.|.+ ||. ..+.+.+|+.+++..||+..+...+..++.+.++.||....+ ..+.|..++...+
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 5654 6788888 884 788999999999999999999998888999999999998775 4455555555543
No 124
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.53 E-value=3.5e-13 Score=160.07 Aligned_cols=184 Identities=23% Similarity=0.311 Sum_probs=128.1
Q ss_pred CCCCCCccCCcHHHHH---HHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 374 ESVSFDDIGGLSEYID---ALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~---~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+.+|++++|++.++. .|..++.. ....++|||||||||||++|++||+.+. ..|+.++
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~ln 84 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLN 84 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeeh
Confidence 4678999999999885 45555433 2335799999999999999999999874 4555555
Q ss_pred chhhhhhhHhHHHHHHHHHHHHH-----HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec
Q 003859 451 GADVLSKWVGEAERQLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a-----~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa 525 (791)
+.... + ..++.++..+ ......||||||+|.|. ...+..|+..++ .+.+++|+
T Consensus 85 a~~~~---i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE----~g~IiLI~ 142 (725)
T PRK13341 85 AVLAG---V----KDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVE----NGTITLIG 142 (725)
T ss_pred hhhhh---h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhc----CceEEEEE
Confidence 43211 1 1122222222 12345699999999874 233455666665 35677776
Q ss_pred cCC--chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHccCCCHHHHHHHH
Q 003859 526 ATN--RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-------KWKQPPSRELKSELAASCVGYCGADLKALC 596 (791)
Q Consensus 526 ttn--~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~-------~~~~~~~~~~~~~LA~~t~G~s~~di~~l~ 596 (791)
+|+ ....++++|++ |+ ..+.|++++.+++..||+..+. .....++.+.+..|+..+.| ..+.+.+++
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 653 33568899998 76 4689999999999999999887 34567788888999988855 566677777
Q ss_pred HHHHH
Q 003859 597 TEAAI 601 (791)
Q Consensus 597 ~~A~~ 601 (791)
+.|+.
T Consensus 219 e~a~~ 223 (725)
T PRK13341 219 ELAVE 223 (725)
T ss_pred HHHHH
Confidence 76553
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.6e-13 Score=158.08 Aligned_cols=193 Identities=21% Similarity=0.222 Sum_probs=143.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|++|+|++.++..|..++.. -+.+..+||+||+|+|||++|++||+.+.....
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 467899999999999999998765 145678999999999999999999999854321
Q ss_pred -------------ceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHH
Q 003859 443 -------------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (791)
Q Consensus 443 -------------~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~ 505 (791)
+..++.++.... .....++.++..+... ...||||||+|.|. ....
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~------~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~ 149 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASH------TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAF 149 (598)
T ss_pred cccHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHH
Confidence 111222222110 1123456666555432 25699999999883 3457
Q ss_pred HHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcc
Q 003859 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (791)
Q Consensus 506 ~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~ 585 (791)
+.|+..|+. ....+++|++|+.+..+.+.|++ ||. .|.|..|+.++...+|...+...+..++.+.+..|+..+.
T Consensus 150 naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888884 34567777777777888888988 884 7999999999999999999998888889888888888777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003859 586 GYCGADLKALCTEAAI 601 (791)
Q Consensus 586 G~s~~di~~l~~~A~~ 601 (791)
| +.+++.+++..++.
T Consensus 225 G-dlr~al~~Ldkli~ 239 (598)
T PRK09111 225 G-SVRDGLSLLDQAIA 239 (598)
T ss_pred C-CHHHHHHHHHHHHh
Confidence 6 67777777766543
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=9.3e-13 Score=149.65 Aligned_cols=207 Identities=12% Similarity=0.155 Sum_probs=139.2
Q ss_pred CCCCCcc-CCcHH--HHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 375 SVSFDDI-GGLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 375 ~~~~~~l-~G~e~--~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+|+++ +|-.+ +...+..+...| | ...+.++|||++|+|||+|++++++.+........++++++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~----------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP----------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc----------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4789984 45544 233333332211 1 12356999999999999999999998865444456667788
Q ss_pred hhhhhhhHhHHHH---HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAER---QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~---~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...+...... .+..+... .....||+|||++.+.+. ......|+.+++.+...+..+||++..
T Consensus 180 ~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~~k---------~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 180 DEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLSYK---------EKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 8877765544332 12222111 234569999999988532 233445555555544455555665555
Q ss_pred chhh---hhhhhcCCCCc--cccccCCCCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 003859 529 RVDA---IDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQ--PPSRELKSELAASCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 529 ~~~~---Ld~aL~r~gRf--~~~I~~~~Pd~eer~~IL~~~l~~~~~--~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~ 601 (791)
.|.. +++.|.+ || ..++.+.+|+.+++.+||+..+...+. .++.+.+..||..+.| .++.|..+|.++..
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 5554 4678888 88 467789999999999999999887553 6888999999998887 78888888888876
Q ss_pred HHHHh
Q 003859 602 RAFRE 606 (791)
Q Consensus 602 ~a~~~ 606 (791)
.+...
T Consensus 326 ~a~~~ 330 (450)
T PRK14087 326 WSQQN 330 (450)
T ss_pred HHhcc
Confidence 55543
No 127
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-14 Score=158.33 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=81.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----H
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----Y 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~ 727 (791)
.++.|.++-|.++..+++.+.+.. ++.|..|.++|- ++|.|+||+||||||||+||+++|.. |
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef----LkdP~kftrLGG---------KLPKGVLLvGPPGTGKTlLARAvAGEA~VPF 365 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF----LKDPTKFTRLGG---------KLPKGVLLVGPPGTGKTLLARAVAGEAGVPF 365 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH----hcCcHHhhhccC---------cCCCceEEeCCCCCchhHHHHHhhcccCCCe
Confidence 578999999997666666555544 567888999865 35779999999999999766666653 3
Q ss_pred cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 728 MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 728 ~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
|...++.|--.++ +.++.+|..|++++||||||||||++...|--
T Consensus 366 F~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~ 414 (752)
T KOG0734|consen 366 FYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP 414 (752)
T ss_pred EeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc
Confidence 4444555544443 77888889999999999999999998765543
No 128
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=156.20 Aligned_cols=211 Identities=21% Similarity=0.312 Sum_probs=144.9
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE-echhhh--
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR-KGADVL-- 455 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i-~~~~~~-- 455 (791)
+|--|++++|+.|.++|.-... .|-....-++|+||||+|||++++.||..|++.+.++.+--+ +.+++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 3568999999999998865211 123445679999999999999999999999765433322111 112222
Q ss_pred -hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-------------CCCcE
Q 003859 456 -SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------------SRGQV 521 (791)
Q Consensus 456 -~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------------~~~~v 521 (791)
..|+|.....+-+.+..+....| +++|||+|.|... ..+ .-...||.+|+.-+ .-++|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-~qG------DPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-HQG------DPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-CCC------ChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 25788888888889999988888 9999999999721 111 12334566655311 12479
Q ss_pred EEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc-----C-----CCCCCHHHHHHHHHH-c--cC--
Q 003859 522 VLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----W-----KQPPSRELKSELAAS-C--VG-- 586 (791)
Q Consensus 522 ivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~-----~-----~~~~~~~~~~~LA~~-t--~G-- 586 (791)
++|+|+|..+.|+++|+. |+ .+|.++-+..++...|.+.|+-. . .+.++.+.+..|... | .|
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVR 632 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVR 632 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999 99 47999999999999999877732 1 223344444444332 1 11
Q ss_pred CCHHHHHHHHHHHHHHHHHhh
Q 003859 587 YCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 587 ~s~~di~~l~~~A~~~a~~~~ 607 (791)
---..|..+|+.++.......
T Consensus 633 nLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 633 NLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 123567777877776666544
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.2e-13 Score=149.63 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=138.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------CceEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------QKVSF 446 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------~~~~~ 446 (791)
.+.+|++|+|++.+++.|...+... ..+.++|||||||+|||++|+++|+.+...+ ....+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 5678999999999999999887651 4457899999999999999999999986422 12333
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEE
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV 522 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vi 522 (791)
+.++.... .....++.++..+.. ..+.||||||+|.+. ...++.|+..++. ....++
T Consensus 80 ~~l~~~~~------~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~--~~~~~~ 140 (367)
T PRK14970 80 FELDAASN------NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE--PPAHAI 140 (367)
T ss_pred EEeccccC------CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC--CCCceE
Confidence 33332211 112345555554432 235699999999774 2345677777764 334456
Q ss_pred EeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 523 vIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
+|++|+....+.+++.+ |+. .+.|+.|+.++...++...+...+..++.+.++.|+..+.| +.+.+.+.+....
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66667777888888887 774 68999999999999999999888888888888889987765 5666666665444
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=6.1e-13 Score=151.21 Aligned_cols=191 Identities=22% Similarity=0.284 Sum_probs=138.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.++..|...+..- ..+..+|||||+|+|||++|+++|+.+...
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 4578999999999999999887651 345679999999999999999999988532
Q ss_pred -------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHH----HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHH
Q 003859 441 -------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (791)
Q Consensus 441 -------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a----~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll 509 (791)
+.+..++.+++....+ ...++.+...+ ......||||||+|.|. ....+.|+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~g------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LL 142 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRG------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLL 142 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCC------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHH
Confidence 1122344444322110 11222222222 22346799999999874 33567888
Q ss_pred HHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 003859 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (791)
Q Consensus 510 ~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~ 589 (791)
..|+. ....+++|++|+.+..|.+.|++ |+. .|.|..++.++...+|...+...+...+.+.+..|+..+.| +.
T Consensus 143 k~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dl 216 (451)
T PRK06305 143 KTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SL 216 (451)
T ss_pred HHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88885 34567777777888889999988 885 69999999999999999998888888888888888888865 55
Q ss_pred HHHHHHHHHH
Q 003859 590 ADLKALCTEA 599 (791)
Q Consensus 590 ~di~~l~~~A 599 (791)
+.+.+++..+
T Consensus 217 r~a~~~Lekl 226 (451)
T PRK06305 217 RDAESLYDYV 226 (451)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.50 E-value=5e-13 Score=145.96 Aligned_cols=181 Identities=20% Similarity=0.233 Sum_probs=123.2
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
....+.+|++++|++.+++.|..++.. | ..+..+||+||||+|||++|+++|+.++ ..++.++
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~ 75 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVN 75 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEec
Confidence 344678999999999999999988753 1 3455677799999999999999999874 3455555
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHH-hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
+.. .. .......+..+..... ...+.||||||+|.+.. ......|...++.. ...+.+|++||.
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~ 140 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANN 140 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCC
Confidence 554 11 2222222222222211 13467999999998731 12234455556643 345677888899
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHccC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-------KWKQPPSRELKSELAASCVG 586 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~-------~~~~~~~~~~~~~LA~~t~G 586 (791)
+..+.++|++ ||. .+.|+.|+.+++..|+..++. ..+...+.+.+..++....|
T Consensus 141 ~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 141 KNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred hhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 8999999998 995 789999999999888765433 23555666677777776554
No 132
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=3.6e-13 Score=147.64 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=87.9
Q ss_pred CCeEEEEeCCCccCCCCCCchhh-hhHHHHHHHHHHHhccC--------CCCcEEEeccCC----chhhhhhhhcCCCCc
Q 003859 477 QPSIIFFDEIDGLAPVRSSKQEQ-IHNSIVSTLLALMDGLD--------SRGQVVLIGATN----RVDAIDGALRRPGRF 543 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~~~~~~~~~-~~~~v~~~Ll~~l~~~~--------~~~~vivIattn----~~~~Ld~aL~r~gRf 543 (791)
+..||||||||.|+......... ...-++..||.+|++-. .+.++++|++.. .|..|-|.|.. ||
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RF 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--cc
Confidence 34599999999999765322222 23458889999998732 246788887753 46667788876 99
Q ss_pred cccccCCCCCHHHHHHHHH----HHHhc---------CCCCCCHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHH
Q 003859 544 DREFNFPLPGCEARAEILD----IHTRK---------WKQPPSRELKSELAASC-------VGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 544 ~~~I~~~~Pd~eer~~IL~----~~l~~---------~~~~~~~~~~~~LA~~t-------~G~s~~di~~l~~~A~~~a 603 (791)
...+.+..++.++...||. .++++ ..+..+.+.+..||..+ .+.-.+-|..++......+
T Consensus 325 Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~ 404 (441)
T TIGR00390 325 PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDI 404 (441)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999983 22222 23445677777777654 3555666777777666555
Q ss_pred HHh
Q 003859 604 FRE 606 (791)
Q Consensus 604 ~~~ 606 (791)
...
T Consensus 405 ~fe 407 (441)
T TIGR00390 405 SFE 407 (441)
T ss_pred Hhc
Confidence 443
No 133
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.4e-14 Score=162.96 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=86.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----H
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----Y 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~ 727 (791)
..+.|.|++|+.+..+++.+.+.- +++|+.|.++|.. .|.|+||+||||||||+||+++|.. |
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f----LKNP~~Y~~lGAK---------iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF----LKNPEQYQELGAK---------IPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 372 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH----hcCHHHHHHcCCc---------CcCceEEECCCCCcHHHHHHHHhcccCCce
Confidence 458999999998888888887666 7889999999775 3559999999999999766666654 4
Q ss_pred cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 728 MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 728 ~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+.+.+..|.-.+. ..++.+|..|+..+|||||+||||..+.+++
T Consensus 373 ~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~ 420 (774)
T KOG0731|consen 373 FSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG 420 (774)
T ss_pred eeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccccccc
Confidence 4555566654443 5677889999999999999999999999997
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=4.2e-13 Score=147.24 Aligned_cols=219 Identities=21% Similarity=0.244 Sum_probs=145.6
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh-hh
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-KW 458 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~-~~ 458 (791)
|+|++.++..|..++........+...+. -..+.+|||+||||||||++|++||..++ ++|+.+++..++. .|
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~-----~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGY 91 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC-----ChheeecchhhccCCc
Confidence 99999999999888754211111111110 01358999999999999999999999984 6777777766654 45
Q ss_pred Hh-HHHHHHHHHHHHH----------------------------------------------------------------
Q 003859 459 VG-EAERQLKLLFEEA---------------------------------------------------------------- 473 (791)
Q Consensus 459 ~g-~~~~~l~~lf~~a---------------------------------------------------------------- 473 (791)
+| ..+..++.+|..|
T Consensus 92 vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 171 (443)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDK 171 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCc
Confidence 55 3334444444333
Q ss_pred ------------------------------------------------------------------------H--hcCCe
Q 003859 474 ------------------------------------------------------------------------Q--RNQPS 479 (791)
Q Consensus 474 ------------------------------------------------------------------------~--~~~p~ 479 (791)
. ..+..
T Consensus 172 ~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G 251 (443)
T PRK05201 172 EIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG 251 (443)
T ss_pred EEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Confidence 0 11345
Q ss_pred EEEEeCCCccCCCCCCchhh-hhHHHHHHHHHHHhcc--------CCCCcEEEeccC----CchhhhhhhhcCCCCcccc
Q 003859 480 IIFFDEIDGLAPVRSSKQEQ-IHNSIVSTLLALMDGL--------DSRGQVVLIGAT----NRVDAIDGALRRPGRFDRE 546 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~-~~~~v~~~Ll~~l~~~--------~~~~~vivIatt----n~~~~Ld~aL~r~gRf~~~ 546 (791)
||||||||.|+...+..... ...-++..||.+|++- -.+.+|++|++. ..|..|-|.|.. ||..+
T Consensus 252 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 329 (443)
T PRK05201 252 IVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIR 329 (443)
T ss_pred EEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 99999999999764322222 2345888999999873 124678888775 345667788876 99999
Q ss_pred ccCCCCCHHHHHHHHH----HHHhc---------CCCCCCHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHh
Q 003859 547 FNFPLPGCEARAEILD----IHTRK---------WKQPPSRELKSELAASC-------VGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 547 I~~~~Pd~eer~~IL~----~~l~~---------~~~~~~~~~~~~LA~~t-------~G~s~~di~~l~~~A~~~a~~~ 606 (791)
+.+..++.++...||. .++++ ..+..+.+.+..||..+ .+.-.+-|..++......+...
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhcc
Confidence 9999999999999983 23322 34455677777777654 3455566777776666555443
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=147.40 Aligned_cols=193 Identities=17% Similarity=0.207 Sum_probs=137.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.+++.|+.++.. | ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 467899999999999999888764 1 4456799999999999999999999985421
Q ss_pred ---------------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhH
Q 003859 442 ---------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (791)
Q Consensus 442 ---------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~ 502 (791)
.+.+++.+++... .....++.+...+.. ....||||||+|.+. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~ 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------I 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------H
Confidence 0112223322111 012334444444421 224599999999884 2
Q ss_pred HHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003859 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (791)
Q Consensus 503 ~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~ 582 (791)
..++.|+..++. ....+++|.+|+.+..+.+.|.+ |+. .+.|..++.++...++...+...+..++.+.+..|+.
T Consensus 142 ~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345667888773 34456666666777888888887 775 7999999999999999999988888888888888888
Q ss_pred HccCCCHHHHHHHHHHHHH
Q 003859 583 SCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 583 ~t~G~s~~di~~l~~~A~~ 601 (791)
.+.| +.+.+.+++..+..
T Consensus 217 ~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 8876 55666666665443
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.47 E-value=3.3e-13 Score=152.47 Aligned_cols=201 Identities=21% Similarity=0.217 Sum_probs=155.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC--ceEEEEEe-
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRK- 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~- 450 (791)
.+.+|++|+|++.+...|...+..- +...+.||+||.|||||++||.+|+.+..... .-+|-.+.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 4678999999999999999998661 44567999999999999999999999865421 01111110
Q ss_pred chhhhhh-h---------HhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC
Q 003859 451 GADVLSK-W---------VGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (791)
Q Consensus 451 ~~~~~~~-~---------~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~ 516 (791)
|..+... + ....-..++.+.+.+.. ...-|++|||+|.| +....+.||..++ .
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--E 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--c
Confidence 0000000 0 01133456777766653 33569999999988 5677888999888 5
Q ss_pred CCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHH
Q 003859 517 SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALC 596 (791)
Q Consensus 517 ~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~ 596 (791)
+..+|++|.+|..+..+++.+++ ||. .+.|...+.++....|..++....+..+.+.+..+|....| +.+|...|+
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 67789999999999999999999 995 68999999999999999999999999999999989988887 678888888
Q ss_pred HHHHHHH
Q 003859 597 TEAAIRA 603 (791)
Q Consensus 597 ~~A~~~a 603 (791)
..|....
T Consensus 222 Dq~i~~~ 228 (515)
T COG2812 222 DQAIAFG 228 (515)
T ss_pred HHHHHcc
Confidence 8776543
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3e-12 Score=141.25 Aligned_cols=214 Identities=20% Similarity=0.249 Sum_probs=148.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+....+.+.+.++++++|..++...+. -..|.+++|||+||||||++++.++.++........++++||..
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE 82 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee
Confidence 344445599999999999998755332 24566799999999999999999999997765555577778744
Q ss_pred hhhhh------H---------hH-HHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC
Q 003859 454 VLSKW------V---------GE-AERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (791)
Q Consensus 454 ~~~~~------~---------g~-~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~ 516 (791)
..+.+ . |. ....+..+++.... ....||+|||+|.|+...+ .++..|+.+....
T Consensus 83 ~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~- 153 (366)
T COG1474 83 LRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN- 153 (366)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc-
Confidence 33221 1 11 22233334444333 3467999999999985421 6777787777654
Q ss_pred CCCcEEEeccCCchh---hhhhhhcCCCCc-cccccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHH---ccCC
Q 003859 517 SRGQVVLIGATNRVD---AIDGALRRPGRF-DREFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAAS---CVGY 587 (791)
Q Consensus 517 ~~~~vivIattn~~~---~Ld~aL~r~gRf-~~~I~~~~Pd~eer~~IL~~~l~~--~~~~~~~~~~~~LA~~---t~G~ 587 (791)
..+|.||+.+|..+ .+++.+.+ +| ...|.|++++.+|...||...... .....+.+.+..+|.. ..|
T Consensus 154 -~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G- 229 (366)
T COG1474 154 -KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG- 229 (366)
T ss_pred -ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-
Confidence 56789999999864 57888877 55 345899999999999999987764 2334455555444433 333
Q ss_pred CHHHHHHHHHHHHHHHHHhhCC
Q 003859 588 CGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 588 s~~di~~l~~~A~~~a~~~~~~ 609 (791)
..+-...+|+.|+..|.++...
T Consensus 230 DAR~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCC
Confidence 4455566789999999887654
No 138
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.8e-12 Score=152.32 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=136.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|++|+|++.+++.|+.++... ..+..+|||||+|+|||++|+++|+.+.....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 5678999999999999998887641 33456899999999999999999999853211
Q ss_pred ---------ceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHH
Q 003859 443 ---------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (791)
Q Consensus 443 ---------~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll 509 (791)
+..++.++..... ....++.+...+.. ....||||||+|.|. ...++.|+
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~------~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLL 141 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHT------SVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALL 141 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccC------CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHH
Confidence 1223333322110 11223444433322 224599999999873 34567788
Q ss_pred HHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 003859 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (791)
Q Consensus 510 ~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~ 589 (791)
..|+.. ...++||++++..+.+.+.|.+ |+. .+.|..++..+...++...+...+..++.+.+..|+..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888853 3456677677777888888887 775 68899999999999999999888888888888888888876 67
Q ss_pred HHHHHHHHHH
Q 003859 590 ADLKALCTEA 599 (791)
Q Consensus 590 ~di~~l~~~A 599 (791)
+.+.+++...
T Consensus 216 r~al~~LekL 225 (585)
T PRK14950 216 RDAENLLQQL 225 (585)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 139
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.46 E-value=6.9e-13 Score=159.40 Aligned_cols=226 Identities=16% Similarity=0.195 Sum_probs=149.0
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV----- 454 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~----- 454 (791)
+..|++.+|+.|.+++..... .+......++|+||||||||++++.+|..++. .|+.++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-----~~~~i~~~~~~d~~~ 390 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGR-----KYVRMALGGVRDEAE 390 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEcCCCCCHHH
Confidence 489999999999988764211 11123456999999999999999999999863 3433332221
Q ss_pred -h---hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-------------CC
Q 003859 455 -L---SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-------------DS 517 (791)
Q Consensus 455 -~---~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-------------~~ 517 (791)
. ..|.|.....+...+..+....| ||||||+|.+..... ......|+..|+.- ..
T Consensus 391 i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-------g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 391 IRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-------GDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred hccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-------CCHHHHHHHHhccccEEEEeccccccccc
Confidence 1 12444444455555555444445 899999999864321 12345677776631 12
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----------CCCCCCHHHHHHHHHH-ccC
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----------WKQPPSRELKSELAAS-CVG 586 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~----------~~~~~~~~~~~~LA~~-t~G 586 (791)
-++|++|+|+|.. .|+++|+. ||. +|.|..++.++..+|++.++.. ..+..+...+..|+.. +..
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e 538 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcc
Confidence 3689999999987 59999999 995 7999999999999999887731 2345677777777753 234
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcc
Q 003859 587 YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (791)
Q Consensus 587 ~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~ 638 (791)
+-.+.|..++...+..++.+.... .....+.|+.+++...+..
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~---------~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLD---------KSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhc---------CCCceeeecHHHHHHHhCC
Confidence 445666666666555544432110 0113467888888888764
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.46 E-value=4.6e-12 Score=139.45 Aligned_cols=212 Identities=18% Similarity=0.211 Sum_probs=158.2
Q ss_pred ccCCCCCCCc-cCCcHHH--HHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 371 QVDESVSFDD-IGGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 371 ~~~~~~~~~~-l~G~e~~--k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
...+..+|++ |+|-.+. ......+-..| | ..-+.++||||.|+|||+|++|+++.+...+.+..++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~ 147 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVV 147 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEE
Confidence 4568899999 4555432 23333322221 1 2345699999999999999999999999888888999
Q ss_pred EEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 448 ~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++....+...++......-..-|..-. +-.+|+||+++.+.++ ......|+..++.+...++-+|+.+-
T Consensus 148 y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk---------~~~qeefFh~FN~l~~~~kqIvltsd 216 (408)
T COG0593 148 YLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK---------ERTQEEFFHTFNALLENGKQIVLTSD 216 (408)
T ss_pred eccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC---------hhHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 999998888777665554445555555 4469999999988753 23355667777766667777777777
Q ss_pred Cchhhh---hhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 528 NRVDAI---DGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 528 n~~~~L---d~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|..+ .+.|.+ ||. .++.+.+|+.+.|..||+..+...++.++.+++..||..... +.++|..++......
T Consensus 217 r~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 217 RPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 777664 488888 884 567889999999999999999999999999999999988764 567777777777666
Q ss_pred HHHhh
Q 003859 603 AFREK 607 (791)
Q Consensus 603 a~~~~ 607 (791)
+....
T Consensus 294 a~~~~ 298 (408)
T COG0593 294 ALFTK 298 (408)
T ss_pred HHhcC
Confidence 65543
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.46 E-value=1.6e-13 Score=153.12 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=86.5
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH--
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY-- 727 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~-- 727 (791)
..|.++|.+|+|++.+.+++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|++++...
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~---pl~~~~~~~~~Gl~---------~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVEL---PLTCPELYEQIGID---------PPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHH---HhcCHHHHHhcCCC---------CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45889999999999999888888777 78899999998764 35599999999999998887777643
Q ss_pred --cCchhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 728 --MNWRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 728 --~~~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+.+....+...+ ...++.+|..|...+||||||||||.++..+..
T Consensus 206 ~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~ 256 (398)
T PTZ00454 206 TFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD 256 (398)
T ss_pred CEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccc
Confidence 222333333222 256777888898899999999999999876643
No 142
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.7e-14 Score=150.44 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=89.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----H
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF----Y 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~----~ 727 (791)
-.|+|.+||||+...+.+.+.+-. |+.+++.|.+.++. +++.|||||||||||||.+|++++.. |
T Consensus 87 I~v~f~DIggLe~v~~~L~e~Vil---Plr~pelF~~g~Ll--------~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f 155 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVIL---PLRRPELFAKGKLL--------RPPKGILLYGPPGTGKTMLAKAIAKEAGANF 155 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhh---cccchhhhcccccc--------cCCccceecCCCCchHHHHHHHHHHHcCCCc
Confidence 568999999998777777666555 89999999865443 34449999999999999777666654 3
Q ss_pred cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccccccccccccccc
Q 003859 728 MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFGGRTHMN 785 (791)
Q Consensus 728 ~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~~~~~~~ 785 (791)
.++....+..... .++..+|.-|.+-+||||||||+|+.-.+| ++.-|+..+.|.
T Consensus 156 Inv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK 214 (386)
T KOG0737|consen 156 INVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMK 214 (386)
T ss_pred ceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHH
Confidence 3344333332222 667778999999999999999999999988 466777766553
No 143
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.45 E-value=1.7e-12 Score=145.28 Aligned_cols=222 Identities=21% Similarity=0.265 Sum_probs=147.2
Q ss_pred CCCc-cCCcHHHHHHHHHHHHcccCChhHhhhc----CC-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASY----HI-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 377 ~~~~-l~G~e~~k~~L~~~v~~pl~~~~~~~~~----g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.++. |+|++.+++.|..++..+.+. +.... .. .+..+|||+||||||||++|++||..+. ++|+.++
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r--~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id 140 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKR--LRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIAD 140 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHh--hhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecc
Confidence 4554 899999999997776442111 11100 01 2346899999999999999999999884 6777777
Q ss_pred chhhhh-hhHhHH-HHHHHHHHHH----HHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccC-----
Q 003859 451 GADVLS-KWVGEA-ERQLKLLFEE----AQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLD----- 516 (791)
Q Consensus 451 ~~~~~~-~~~g~~-~~~l~~lf~~----a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~----- 516 (791)
+..+.. .|+|.. ...+..++.. .....++||||||||.+....... .......+++.||.+|++..
T Consensus 141 ~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 141 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 766542 466653 3334444432 223457899999999998653211 11112358888999997521
Q ss_pred ------CCCcEEEeccCCchh----------------------------------------------------hhhhhhc
Q 003859 517 ------SRGQVVLIGATNRVD----------------------------------------------------AIDGALR 538 (791)
Q Consensus 517 ------~~~~vivIattn~~~----------------------------------------------------~Ld~aL~ 538 (791)
....+++|.|+|... .+.|+|+
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 112345555554400 0345666
Q ss_pred CCCCccccccCCCCCHHHHHHHHHH----HHh---------cCCCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHH
Q 003859 539 RPGRFDREFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 539 r~gRf~~~I~~~~Pd~eer~~IL~~----~l~---------~~~~~~~~~~~~~LA~~--t~G~s~~di~~l~~~A~~~a 603 (791)
. |++.++.|.+.+.+++..|+.. +++ +..+..+..++..||.. ..++-.+.|+.+++....-.
T Consensus 301 g--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 301 G--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred C--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 5 9999999999999999999972 332 23456788888899986 45677888999988887777
Q ss_pred HHhh
Q 003859 604 FREK 607 (791)
Q Consensus 604 ~~~~ 607 (791)
+.+.
T Consensus 379 ~~~~ 382 (412)
T PRK05342 379 MFEL 382 (412)
T ss_pred HHhc
Confidence 6654
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.3e-12 Score=149.17 Aligned_cols=192 Identities=17% Similarity=0.229 Sum_probs=137.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (791)
.+.+|++|+|++.++..|+.++.. -..+.++||+||+|||||++|+.+|+.+....
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 467899999999999999987754 14456799999999999999999999985421
Q ss_pred ---------------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhH
Q 003859 442 ---------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (791)
Q Consensus 442 ---------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~ 502 (791)
.+.+|+.+++... .....++.+.+.+. .....||||||+|.|. .
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~ 141 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------T 141 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------H
Confidence 1112222222111 01234444444442 1234599999999884 3
Q ss_pred HHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003859 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (791)
Q Consensus 503 ~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~ 582 (791)
...+.|+..|+. ....+++|.+|+.+..|.+.|.+ |+ ..|.|..++.++....|...+...+..++.+.+..|+.
T Consensus 142 ~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346778888884 33456666666777888888888 77 47999999999999999998888888888888888888
Q ss_pred HccCCCHHHHHHHHHHHH
Q 003859 583 SCVGYCGADLKALCTEAA 600 (791)
Q Consensus 583 ~t~G~s~~di~~l~~~A~ 600 (791)
.+.| +.+.+.+++....
T Consensus 217 ~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HhCC-CHHHHHHHHHHHH
Confidence 8876 4555555555443
No 145
>PRK06620 hypothetical protein; Validated
Probab=99.44 E-value=3.6e-12 Score=131.02 Aligned_cols=181 Identities=12% Similarity=0.176 Sum_probs=120.5
Q ss_pred CcccCCCCCCCc-cCCc--HHHHHHHHHHHHcccCChhHhhhcCCCC-CceEEEEcCCCChHHHHHHHHHHHHhhcCCce
Q 003859 369 PLQVDESVSFDD-IGGL--SEYIDALKEMVFFPLLYPDFFASYHITP-PRGVLLCGPPGTGKTLIARALACAASKAGQKV 444 (791)
Q Consensus 369 ~~~~~~~~~~~~-l~G~--e~~k~~L~~~v~~pl~~~~~~~~~g~~~-~~~vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (791)
++...+..+|++ |+|- ..+...++.+... ++..+ ...++||||||||||+|++++++..+ .
T Consensus 6 ~~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~ 70 (214)
T PRK06620 6 RFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----A 70 (214)
T ss_pred CCCCCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccC-----C
Confidence 344557889999 4554 3345555544321 12222 26799999999999999999988753 2
Q ss_pred EEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEe
Q 003859 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLI 524 (791)
Q Consensus 445 ~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivI 524 (791)
.++. .... . ...+ ....+|+|||||.+- . ..|+.+++.+...+..+||
T Consensus 71 ~~~~--~~~~-~----------~~~~-----~~~d~lliDdi~~~~-----------~---~~lf~l~N~~~e~g~~ili 118 (214)
T PRK06620 71 YIIK--DIFF-N----------EEIL-----EKYNAFIIEDIENWQ-----------E---PALLHIFNIINEKQKYLLL 118 (214)
T ss_pred EEcc--hhhh-c----------hhHH-----hcCCEEEEeccccch-----------H---HHHHHHHHHHHhcCCEEEE
Confidence 2211 1100 0 0111 123699999998441 1 1344444444456677888
Q ss_pred ccCCchhh--hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 525 GATNRVDA--IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 525 attn~~~~--Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
+++..|.. + +.|++ |+. .++.+..|+.+.+..+++..+...++.++.++++.|+..+.+ +.+.+.+++....
T Consensus 119 ts~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 194 (214)
T PRK06620 119 TSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENIN 194 (214)
T ss_pred EcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 87766554 6 78888 884 368999999999999999999888888999999999998876 5666666666543
No 146
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3e-12 Score=150.30 Aligned_cols=190 Identities=23% Similarity=0.223 Sum_probs=139.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|++|+|++.++..|..++..- ....++||+||+|+|||++|+++|+.+.....
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 5678999999999999999987651 23457999999999999999999999864211
Q ss_pred ----------ceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHH
Q 003859 443 ----------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (791)
Q Consensus 443 ----------~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~L 508 (791)
+..++.++.. .......++.++..+.. ....||||||+|.|- ....+.|
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naL 141 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNAL 141 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHH
Confidence 1122222221 11223456666665543 234599999999883 4566788
Q ss_pred HHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 003859 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (791)
Q Consensus 509 l~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s 588 (791)
+..|+. ....+++|++|+.+..|.+.|++ |+. .+.|..++.++....|...+...+..++...+..|+..+.|-
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~- 215 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG- 215 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-
Confidence 998884 45567788888888888899988 884 689999999999999998888877778888888888888774
Q ss_pred HHHHHHHHHH
Q 003859 589 GADLKALCTE 598 (791)
Q Consensus 589 ~~di~~l~~~ 598 (791)
.+++.+++..
T Consensus 216 lr~A~~lLek 225 (620)
T PRK14948 216 LRDAESLLDQ 225 (620)
T ss_pred HHHHHHHHHH
Confidence 3555555543
No 147
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=137.30 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=75.4
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF---- 726 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~---- 726 (791)
.+.+.++++.|-+...+........ +..|+.|..+. |..+|||||||||||++|++++..
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y----LenPe~Fg~WA------------PknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY----LENPERFGDWA------------PKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH----hhChHHhcccC------------cceeEEECCCCccHHHHHHHHhcccCCc
Confidence 3678899998887555544333222 56677777761 448999999999999777776653
Q ss_pred HcCchhHHHHHH----HHHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 727 YMNWRNFLFILL----VFQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 727 ~~~~~~~~l~~d----~~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
++.++...|+-. -.+.+.+++.+|+..+||||||||+|.+|-.
T Consensus 179 ~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLd 225 (368)
T COG1223 179 LLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALD 225 (368)
T ss_pred eEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhh
Confidence 344555555543 3477889999999999999999999998853
No 148
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-13 Score=164.12 Aligned_cols=116 Identities=9% Similarity=0.027 Sum_probs=94.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC--
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN-- 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~-- 729 (791)
..+.|++||||..+++++++.+-. |+.|++.|.++++. ++.|+|||||||||||++|+++++.+..
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~---PLlyPE~f~~~~it---------pPrgvL~~GppGTGkTl~araLa~~~s~~~ 327 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLL---PLLYPEFFDNFNIT---------PPRGVLFHGPPGTGKTLMARALAAACSRGN 327 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHh---HhhhhhHhhhcccC---------CCcceeecCCCCCchhHHHHhhhhhhcccc
Confidence 578999999999999999888766 99999999999887 2349999999999999999888886533
Q ss_pred -------chhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccccccccc
Q 003859 730 -------WRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFG 779 (791)
Q Consensus 730 -------~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~ 779 (791)
.++.......+ +..+-+|..|+++.|+||||||||-||+-++--+-+||.
T Consensus 328 ~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~ 388 (1080)
T KOG0732|consen 328 RKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHA 388 (1080)
T ss_pred cccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhh
Confidence 23333333222 556678889999999999999999999998777766664
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=1.5e-12 Score=155.41 Aligned_cols=201 Identities=20% Similarity=0.273 Sum_probs=140.8
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
.|+|++++++.|...+.... .|+ .|..++||+||||||||++|++||..++ ..|+.++++.+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~ 525 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYM 525 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhc
Confidence 48999999999999886521 122 2334799999999999999999999984 566666766543
Q ss_pred h-----hhHhHHH-----HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---------
Q 003859 456 S-----KWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------- 516 (791)
Q Consensus 456 ~-----~~~g~~~-----~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--------- 516 (791)
. .++|... .....+...+.....+||||||||.+ +..+++.|+.+|+...
T Consensus 526 ~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 526 ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred ccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCcee
Confidence 2 2222110 01112333344556689999999977 4668888999887421
Q ss_pred CCCcEEEeccCCch-------------------------hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh-----
Q 003859 517 SRGQVVLIGATNRV-------------------------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR----- 566 (791)
Q Consensus 517 ~~~~vivIattn~~-------------------------~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~----- 566 (791)
...+++||+|||.- ..+.|.|+. |++.+|.|++.+.++..+|+..++.
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~ 672 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQ 672 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 12467899999832 124577777 9999999999999999999987664
Q ss_pred ----cCCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHh
Q 003859 567 ----KWKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 567 ----~~~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~~~ 606 (791)
+..+..+..+++.|+... ..|-.+.|+.++..-....+..
T Consensus 673 l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 673 LDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 345667788888888654 3455677887777666655543
No 150
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.42 E-value=3.9e-12 Score=141.61 Aligned_cols=224 Identities=21% Similarity=0.290 Sum_probs=147.4
Q ss_pred CCCc-cCCcHHHHHHHHHHHHcccCChhHhhhcC----C-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASYH----I-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 377 ~~~~-l~G~e~~k~~L~~~v~~pl~~~~~~~~~g----~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.|+. |+|++.++..|..++....+......... + ....+|||+||||||||++|++||..++ ++|..++
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~~d 148 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAIAD 148 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEEec
Confidence 3454 79999999999887743211110000000 0 1246899999999999999999998874 5666666
Q ss_pred chhhh-hhhHhHH-HHHHHHHHHHH----HhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCC----
Q 003859 451 GADVL-SKWVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDS---- 517 (791)
Q Consensus 451 ~~~~~-~~~~g~~-~~~l~~lf~~a----~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~---- 517 (791)
+..+. ..|+|.. ...+..++..+ ....++||||||+|.+.+...... ......+++.||.+|++...
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~ 228 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPP 228 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceeccc
Confidence 66543 2355653 33444444322 234577999999999986432111 11123578888998875321
Q ss_pred -------CCcEEEeccCCch-------------------------------------h-------------hhhhhhcCC
Q 003859 518 -------RGQVVLIGATNRV-------------------------------------D-------------AIDGALRRP 540 (791)
Q Consensus 518 -------~~~vivIattn~~-------------------------------------~-------------~Ld~aL~r~ 540 (791)
..++++|.|+|-. . .+.|+|+.
T Consensus 229 ~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg- 307 (413)
T TIGR00382 229 QGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG- 307 (413)
T ss_pred CCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC-
Confidence 2346777776650 0 03466666
Q ss_pred CCccccccCCCCCHHHHHHHHHHH----Hh---------cCCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHH
Q 003859 541 GRFDREFNFPLPGCEARAEILDIH----TR---------KWKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFR 605 (791)
Q Consensus 541 gRf~~~I~~~~Pd~eer~~IL~~~----l~---------~~~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~~ 605 (791)
|++.++.|.+.+.+++..|+... ++ +..+..+..+++.||..+ ..+-.+.|+.+++....-++.
T Consensus 308 -Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 308 -RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred -CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 99999999999999999998752 22 334556788888999863 567788999999888877766
Q ss_pred hh
Q 003859 606 EK 607 (791)
Q Consensus 606 ~~ 607 (791)
+.
T Consensus 387 e~ 388 (413)
T TIGR00382 387 DL 388 (413)
T ss_pred hC
Confidence 54
No 151
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.40 E-value=2.7e-13 Score=154.29 Aligned_cols=111 Identities=9% Similarity=0.017 Sum_probs=82.2
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc-
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM- 728 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~- 728 (791)
..|.++|.+|+||...++++...+.. |+.+++.|.++|+. ++.|+|||||||||||+++++++..+.
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~l---p~~~~~l~~~~gl~---------~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVEL---PFLHPELYREYDLK---------PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHH---HhhCHHHHHhccCC---------CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34889999999999999999998887 78899999998764 355999999999999988888777542
Q ss_pred -------------CchhHHHHHHH----HHHHHHHhhhhhc----CCceEEEEeCchhhcccccc
Q 003859 729 -------------NWRNFLFILLV----FQLFFQILVPRHQ----RRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 729 -------------~~~~~~l~~d~----~e~~~~~~~~a~~----~~P~ivfldeid~~a~~~~~ 772 (791)
......+...+ ...++.+|..+.. ..||||||||+|.++..+..
T Consensus 243 ~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~ 307 (512)
T TIGR03689 243 RIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGS 307 (512)
T ss_pred ccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCC
Confidence 12222222211 1334445555443 37999999999999987754
No 152
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.40 E-value=1.3e-11 Score=145.47 Aligned_cols=229 Identities=24% Similarity=0.278 Sum_probs=144.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYM 448 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~ 448 (791)
.+.+|++|+|++..+..+...+.. ..+.++||+||||||||++|+++++...... ....|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 357889999999999888766533 2345799999999999999999988764221 1356777
Q ss_pred Eechhhh-------hhhHhHHHH----HHHHHHHH----------HHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHH
Q 003859 449 RKGADVL-------SKWVGEAER----QLKLLFEE----------AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVST 507 (791)
Q Consensus 449 i~~~~~~-------~~~~g~~~~----~l~~lf~~----------a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~ 507 (791)
+++..+. ..+++.... .....+.. .......||||||++.|- ...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 7775431 111111000 00111110 011124599999998873 344555
Q ss_pred HHHHHhccC--------------------------CCCcEEEec-cCCchhhhhhhhcCCCCccccccCCCCCHHHHHHH
Q 003859 508 LLALMDGLD--------------------------SRGQVVLIG-ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEI 560 (791)
Q Consensus 508 Ll~~l~~~~--------------------------~~~~vivIa-ttn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~I 560 (791)
|+..|+.-. ....+++|+ ||+.+..++++|++ ||. .+.|++++.++...|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 666664311 112355555 45667889999988 986 578999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 561 LDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 561 L~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
++.++......++.+.+..|+..+. .++...+++..+...+..+.... . .......|+.+|+..++..-
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~--~------~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA--G------KENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh--c------cCCCCeeECHHHHHHHhCCC
Confidence 9999988776677887777776653 34454455555554443332100 0 01123568999999998754
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1e-11 Score=145.73 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=140.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (791)
.+.+|++|+|++.+++.|...+.. | ..+..+|||||+|+|||++|+++|+.+...
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 457899999999999999998764 1 345679999999999999999999988521
Q ss_pred -------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHH
Q 003859 441 -------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (791)
Q Consensus 441 -------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll 509 (791)
+.+..++.+++.... ....++.++..+... ..-|+||||+|.|. ...++.|+
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLL 142 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNN------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFL 142 (614)
T ss_pred HHHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHH
Confidence 112334444433111 123455555544322 23599999999883 34577888
Q ss_pred HHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCH
Q 003859 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (791)
Q Consensus 510 ~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~ 589 (791)
..|+. ....+++|++|+....|-+.|++ |+. ++.|..++.++...+|...+...++..+.+.+..|+..+.| +.
T Consensus 143 K~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 98885 34456677777777889899988 884 69999999999999999999888888888888888888765 56
Q ss_pred HHHHHHHHHHH
Q 003859 590 ADLKALCTEAA 600 (791)
Q Consensus 590 ~di~~l~~~A~ 600 (791)
+++.+++....
T Consensus 217 r~al~~Lekl~ 227 (614)
T PRK14971 217 RDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 154
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.39 E-value=5.2e-13 Score=149.50 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=87.2
Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 648 ~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
....+.+.|.+|+|++.+++++.+.+.. |+.++..|..+|+. ++.|+|||||||||||++|++++...
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~---pl~~~~~~~~~g~~---------~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVEL---PLKKPELFEEVGIE---------PPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHH---HhhCHHHHHhcCCC---------CCCceEEECCCCCChHHHHHHHHHHh
Confidence 3445889999999999999999888777 78889999888664 35599999999999998887777643
Q ss_pred c----CchhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 728 M----NWRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 728 ~----~~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
- .+....+...+ ...++.+|..|...+||||||||||.++..++..
T Consensus 190 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~ 243 (389)
T PRK03992 190 NATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDS 243 (389)
T ss_pred CCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccC
Confidence 2 12222222211 2556678888888899999999999999776543
No 155
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3e-12 Score=149.79 Aligned_cols=236 Identities=22% Similarity=0.232 Sum_probs=163.0
Q ss_pred chHHHHhhccccCCCCCCCCCCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCC----CCceEEEEc
Q 003859 345 DTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT----PPRGVLLCG 420 (791)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~----~~~~vLL~G 420 (791)
+.++...+.+...+.......+...+...+..--..|+|+++++..|...|.. .+.|+. |..++||.|
T Consensus 457 ~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~G 528 (786)
T COG0542 457 DDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLG 528 (786)
T ss_pred HHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeC
Confidence 44666666666554443322222222111222234699999999999999866 334443 334788999
Q ss_pred CCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh------------hHhHHHHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 421 PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 421 ppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~------------~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
|+|+|||.||++||..+.. ....++.++.++++.+ |+|.-+ -..+.+.++..+.|||+||||+.
T Consensus 529 PTGVGKTELAkaLA~~Lfg--~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 529 PTGVGKTELAKALAEALFG--DEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred CCcccHHHHHHHHHHHhcC--CCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh
Confidence 9999999999999999962 3467788888888754 222222 23455566677789999999974
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHhccCC---------CCcEEEeccCCchh----------------------------
Q 003859 489 LAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQVVLIGATNRVD---------------------------- 531 (791)
Q Consensus 489 L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------~~~vivIattn~~~---------------------------- 531 (791)
.++.+++.||+.|+.-.- ..+.+||+|+|--.
T Consensus 605 -----------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 673 (786)
T COG0542 605 -----------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKK 673 (786)
T ss_pred -----------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHh
Confidence 488999999999985321 23679999998521
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHH
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAA 600 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~---------~~~~~~~~~~~~LA~~t~--G~s~~di~~l~~~A~ 600 (791)
...|+|+. |++.+|.|.+.+.+...+|+..++.. +.+.++..+.+.|+..+. .|-++-|..+++.-.
T Consensus 674 ~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 674 HFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred hCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 02467777 99999999999999999999877654 345567788888888764 466677777776655
Q ss_pred HHHHH
Q 003859 601 IRAFR 605 (791)
Q Consensus 601 ~~a~~ 605 (791)
...+.
T Consensus 752 ~~~La 756 (786)
T COG0542 752 EDPLA 756 (786)
T ss_pred HHHHH
Confidence 54444
No 156
>PRK09087 hypothetical protein; Validated
Probab=99.37 E-value=1.2e-11 Score=128.32 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=131.3
Q ss_pred CcccCCCCCCCccCC-c--HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceE
Q 003859 369 PLQVDESVSFDDIGG-L--SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (791)
Q Consensus 369 ~~~~~~~~~~~~l~G-~--e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (791)
++...+..+|++++. - ..+...+... + + .....++||||+|||||+|++++|...+ +.
T Consensus 11 ~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~---~----------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~ 71 (226)
T PRK09087 11 NFSHDPAYGRDDLLVTESNRAAVSLVDHW---P----------N-WPSPVVVLAGPVGSGKTHLASIWREKSD-----AL 71 (226)
T ss_pred CCCCCCCCChhceeecCchHHHHHHHHhc---c----------c-CCCCeEEEECCCCCCHHHHHHHHHHhcC-----CE
Confidence 455667889999653 3 3333332221 1 1 1223499999999999999999997652 33
Q ss_pred EEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec
Q 003859 446 FYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (791)
Q Consensus 446 ~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa 525 (791)
|+ +...+...+ +..... .+|+|||++.+.. . ...|+.+++.+...+..+||+
T Consensus 72 ~i--~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 72 LI--HPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred Ee--cHHHcchHH-----------HHhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHHHHhCCCeEEEE
Confidence 33 222222211 111111 3899999997631 1 123555555555566677777
Q ss_pred cCCchhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 526 ATNRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 526 ttn~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
++..|.. ..+.|++ ||. .++.+..|+.+.+..||+.++...+..+++++++.|+.++.+ +.+.+..++....
T Consensus 124 s~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~ 200 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLD 200 (226)
T ss_pred CCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 7766553 3577888 874 678999999999999999999998899999999999998885 4444554455544
Q ss_pred HHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 601 IRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 601 ~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..+..... .||..-+.+++..+
T Consensus 201 ~~~~~~~~-----------------~it~~~~~~~l~~~ 222 (226)
T PRK09087 201 RLALERKS-----------------RITRALAAEVLNEM 222 (226)
T ss_pred HHHHHhCC-----------------CCCHHHHHHHHHhh
Confidence 44444322 26777777777554
No 157
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=5.3e-12 Score=152.33 Aligned_cols=201 Identities=24% Similarity=0.297 Sum_probs=141.6
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCC----CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHIT----PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
.|+|++.+++.|...+... +.|+. +..++||+||+|||||+||++||..++ ..++.++++.+.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~ 521 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYM 521 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhh
Confidence 5899999999998887642 22332 223589999999999999999999984 456666665543
Q ss_pred h-----hhHhHH-----HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---------
Q 003859 456 S-----KWVGEA-----ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------- 516 (791)
Q Consensus 456 ~-----~~~g~~-----~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--------- 516 (791)
. ..+|.. ......+...++....+||||||+|.+ +..+.+.|+.+|+...
T Consensus 522 ~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 522 EKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred hcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCccc
Confidence 2 122211 011123344455566789999999977 4668888999887531
Q ss_pred CCCcEEEeccCCchh-------------------------hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----
Q 003859 517 SRGQVVLIGATNRVD-------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK---- 567 (791)
Q Consensus 517 ~~~~vivIattn~~~-------------------------~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~---- 567 (791)
...+++||+|||... .+.|.|+. ||+.+|.|.+.+.++...|++..+..
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 123678888887631 14567777 99999999999999999999987753
Q ss_pred -----CCCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHh
Q 003859 568 -----WKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 568 -----~~~~~~~~~~~~LA~~--t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
..+..+..+++.|+.. ...+-.+.|+.++.......+..
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 2356678888888875 34567788888887776666554
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.36 E-value=7.5e-13 Score=148.71 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=85.5
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC-
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN- 729 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~- 729 (791)
.|.++|.+|+||+.+++++.+++.. |+.++..|..+|+. ++.|+|||||||||||++|++++.....
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~l---pl~~p~~~~~~gi~---------~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVEL---PLTHPELYDDIGIK---------PPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHh---hhhCHHHHHhcCCC---------CCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 4779999999999999999998877 78889899998764 3459999999999999888888775322
Q ss_pred ---chhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 730 ---WRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 730 ---~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+....+...+ ...++.+|..|...+||||||||||.++..+..
T Consensus 245 fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~ 294 (438)
T PTZ00361 245 FLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYD 294 (438)
T ss_pred EEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCC
Confidence 2222232222 245677788888889999999999999986643
No 159
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.34 E-value=3.7e-11 Score=136.42 Aligned_cols=237 Identities=17% Similarity=0.198 Sum_probs=161.8
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEEEechh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMRKGAD 453 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i~~~~ 453 (791)
..|.+.+.....|..++...+.. + .....+++.|-||||||.+++.+...|... ...+.|+.+++..
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~----~----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD----Q----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC----C----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 45889999999998888664322 0 123479999999999999999999987532 4678888888854
Q ss_pred hhh----------hhHhH------HHHHHHHHHHHH-HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC
Q 003859 454 VLS----------KWVGE------AERQLKLLFEEA-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (791)
Q Consensus 454 ~~~----------~~~g~------~~~~l~~lf~~a-~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~ 516 (791)
+.+ .+.|+ ....+..-|... ....++||+|||+|.|+.. .+.+++.|+.|.. .
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt--~ 537 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPT--L 537 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCc--C
Confidence 432 11111 222334444321 1234789999999999853 5678888888876 4
Q ss_pred CCCcEEEeccCCchhhhhhhhcC--CCCcc-ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH-
Q 003859 517 SRGQVVLIGATNRVDAIDGALRR--PGRFD-REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL- 592 (791)
Q Consensus 517 ~~~~vivIattn~~~~Ld~aL~r--~gRf~-~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di- 592 (791)
.+.+++||+.+|..+....-|.. ..|++ ..|.|.+++..|..+|+...+.+. ..+..+.++-+|...+..||..-
T Consensus 538 ~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHH
Confidence 57789999999887654333321 11442 358899999999999999999887 34455666666666666665443
Q ss_pred -HHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 593 -KALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 593 -~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
..+|++|...|-.+.... .......|++.|+.+|+..+..+.
T Consensus 617 aldic~RA~Eia~~~~~~~---------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 617 ALDICRRAAEIAEERNVKG---------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHhhhhcccc---------cccccceeehHHHHHHHHHHhhhh
Confidence 345888888887665411 112345699999999999886544
No 160
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=1e-10 Score=117.54 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=143.4
Q ss_pred CCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCce
Q 003859 365 ADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444 (791)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (791)
....|+...+.+.+.+|+|.+.+++.|.+.-.. |.. | .+.++|||||..|||||+|++|+..++...+ .
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g--l 114 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEG--L 114 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcC--C
Confidence 345567777889999999999999999775443 332 2 5678999999999999999999999998776 4
Q ss_pred EEEEEechhhhhhhHhHHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--CCCcE
Q 003859 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--SRGQV 521 (791)
Q Consensus 445 ~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~~~~v 521 (791)
.+++++..++.. +-.++...+. ....|||+|++- + .........|...|++-- ...+|
T Consensus 115 rLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F---------e~gd~~yK~LKs~LeG~ve~rP~NV 175 (287)
T COG2607 115 RLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS-F---------EEGDDAYKALKSALEGGVEGRPANV 175 (287)
T ss_pred eEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC-C---------CCCchHHHHHHHHhcCCcccCCCeE
Confidence 477887776643 2334444443 336799999982 2 112334455666777632 24689
Q ss_pred EEeccCCchhhhhh--------------------hhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 003859 522 VLIGATNRVDAIDG--------------------ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELA 581 (791)
Q Consensus 522 ivIattn~~~~Ld~--------------------aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA 581 (791)
+|.+|+|+-..|+. .+.-+.||...+.|.+++.++...|+.++++.+++..+.+.++.-|
T Consensus 176 l~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eA 255 (287)
T COG2607 176 LFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEA 255 (287)
T ss_pred EEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999998654431 1222349999999999999999999999999999988765544333
Q ss_pred ----HHccCCCHHHHHHHHHH
Q 003859 582 ----ASCVGYCGADLKALCTE 598 (791)
Q Consensus 582 ----~~t~G~s~~di~~l~~~ 598 (791)
..-.|-||+-..+.++.
T Consensus 256 l~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 256 LQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHhcCCCccHhHHHHHHH
Confidence 22345566665555543
No 161
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-12 Score=135.14 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=84.5
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH----
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY---- 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~---- 727 (791)
.+++|+.++||..+..++.+.|.. |+..+..|.++|+. +|.|+|||||||||||+++.++++..
T Consensus 127 ~~~s~~~~ggl~~qirelre~iel---pl~np~lf~rvgIk---------~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIEL---PLTNPELFLRVGIK---------PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEe---eccCchhccccCCC---------CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 357899999998888888877655 89999999999875 24499999999999997766666542
Q ss_pred cCchhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcccc
Q 003859 728 MNWRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 728 ~~~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
..+....+..++ .+++++.|..|+...|||||+||||+.+..+
T Consensus 195 l~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr 241 (388)
T KOG0651|consen 195 LKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR 241 (388)
T ss_pred EEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE
Confidence 223333343344 2888899999999999999999999998877
No 162
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=1.5e-11 Score=133.96 Aligned_cols=166 Identities=27% Similarity=0.379 Sum_probs=104.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCceEEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMR 449 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i 449 (791)
.+..|.+|+|++.++..|.-.+.. ....++||+|+||||||++|++||..+... +..+.+..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 457799999999999988654322 112579999999999999999999988321 111111110
Q ss_pred ech---------hhhh---------------hhHhH--HHHHH---HHHHHHH--HhcCCeEEEEeCCCccCCCCCCchh
Q 003859 450 KGA---------DVLS---------------KWVGE--AERQL---KLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQE 498 (791)
Q Consensus 450 ~~~---------~~~~---------------~~~g~--~~~~l---~~lf~~a--~~~~p~VL~IDEiD~L~~~~~~~~~ 498 (791)
.+. .+.. ..+|. ....+ ...|..- ......+|||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 000 0000 01110 00000 0001100 0011249999999877
Q ss_pred hhhHHHHHHHHHHHhccC-----------CCCcEEEeccCCchh-hhhhhhcCCCCccccccCCCCCH-HHHHHHHHHHH
Q 003859 499 QIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPGC-EARAEILDIHT 565 (791)
Q Consensus 499 ~~~~~v~~~Ll~~l~~~~-----------~~~~vivIattn~~~-~Ld~aL~r~gRf~~~I~~~~Pd~-eer~~IL~~~l 565 (791)
...++..|+..|+.-. ....+++|+++|..+ .++++|.. ||...|.+++|.. +++.+|+....
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 4567788888886422 235689999998755 58899998 9999999998877 88999998743
No 163
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.32 E-value=5e-11 Score=125.68 Aligned_cols=129 Identities=23% Similarity=0.137 Sum_probs=97.8
Q ss_pred CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc------------hhhhhhhhcCCCCccc
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~------------~~~Ld~aL~r~gRf~~ 545 (791)
|.||||||+|.|- -..+..|-..|+. .-.+ +||++||+ |.-+|..|+. |. .
T Consensus 292 pGVLFIDEvHmLD-----------IE~FsFlnrAlEs--e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHMLD-----------IECFSFLNRALES--ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhhh-----------HHHHHHHHHHhhc--ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 7899999998772 2334444455552 2233 55556664 4567888887 76 4
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCcccccccccc
Q 003859 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSV 625 (791)
Q Consensus 546 ~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 625 (791)
+|...+++.++.++||+..+....+.++.+.++.|+.....-|.+...+|+.-|...|.++...
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~---------------- 418 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK---------------- 418 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC----------------
Confidence 7888899999999999999999999999999999999888888899999999998888887532
Q ss_pred ceeHHHHHHHhccc
Q 003859 626 TVEKYHFIEAMSTI 639 (791)
Q Consensus 626 ~lt~~df~~Al~~~ 639 (791)
.|..+|+..|-.-|
T Consensus 419 ~V~~~dVe~a~~lF 432 (450)
T COG1224 419 RVEVEDVERAKELF 432 (450)
T ss_pred eeehhHHHHHHHHH
Confidence 47778888775444
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=1.6e-11 Score=149.25 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=141.6
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCC---CCCc-eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI---TPPR-GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~---~~~~-~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..|+|++.++..|...+.... .|+ ..|. .+||+||+|||||.+|++||..+... ...++.++++.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~ 635 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEF 635 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHh
Confidence 358999999999999886531 122 2344 48999999999999999999998532 235667776655
Q ss_pred hhh------------hHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC------
Q 003859 455 LSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------ 516 (791)
Q Consensus 455 ~~~------------~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~------ 516 (791)
... |+|.... ..+...++..+.+||+||||+.+ +..+.+.|+..|+...
T Consensus 636 ~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~G 702 (852)
T TIGR03345 636 QEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred hhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCC
Confidence 432 2222111 12334455677899999999865 5677888888887532
Q ss_pred ---CCCcEEEeccCCchh-----------------------------hhhhhhcCCCCccccccCCCCCHHHHHHHHHHH
Q 003859 517 ---SRGQVVLIGATNRVD-----------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (791)
Q Consensus 517 ---~~~~vivIattn~~~-----------------------------~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~ 564 (791)
...+.+||+|||... .+.|+|++ |++ +|.|.+.+.++..+|+...
T Consensus 703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHH
Confidence 124678889988521 14567777 896 8899999999999999876
Q ss_pred Hhc----------CCCCCCHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHh
Q 003859 565 TRK----------WKQPPSRELKSELAASCVG--YCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 565 l~~----------~~~~~~~~~~~~LA~~t~G--~s~~di~~l~~~A~~~a~~~ 606 (791)
+.. ..+.++..+++.|+..+.+ |-.+.|..+++.-...++..
T Consensus 780 L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 780 LDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 643 2345678888889988754 66788888887766555543
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.30 E-value=3.3e-11 Score=147.05 Aligned_cols=239 Identities=20% Similarity=0.219 Sum_probs=150.2
Q ss_pred chHHHHhhccccCCCCCCCCCCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCC---CC-ceEEEEc
Q 003859 345 DTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT---PP-RGVLLCG 420 (791)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~---~~-~~vLL~G 420 (791)
+.++.+.+...+.+.......+...+..-...-...|+|++.++..|...|... ..|+. .| ..+||+|
T Consensus 534 ~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~G 605 (857)
T PRK10865 534 AEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLG 605 (857)
T ss_pred HHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEC
Confidence 445555555555443322222211111112334557999999999999988652 11222 22 4689999
Q ss_pred CCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh-----HhHHH-----HHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 421 PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-----VGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 421 ppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~-----~g~~~-----~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
|+|||||++|++||..+.... ..++.++++.+.... +|... .....+....+....+||||||++.+
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~--~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka- 682 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSD--DAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA- 682 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-
Confidence 999999999999999885332 346677776654321 11000 00111222333444589999999866
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhccC---------CCCcEEEeccCCchh-------------------------hhhhh
Q 003859 491 PVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD-------------------------AIDGA 536 (791)
Q Consensus 491 ~~~~~~~~~~~~~v~~~Ll~~l~~~~---------~~~~vivIattn~~~-------------------------~Ld~a 536 (791)
+..+++.|+.+|+... ...+.+||+|||... .+.|+
T Consensus 683 ----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 752 (857)
T PRK10865 683 ----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPE 752 (857)
T ss_pred ----------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHH
Confidence 4567888888886421 123467888988621 13467
Q ss_pred hcCCCCccccccCCCCCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHH
Q 003859 537 LRRPGRFDREFNFPLPGCEARAEILDIHTRK---------WKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFR 605 (791)
Q Consensus 537 L~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~---------~~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~~ 605 (791)
|+. |++.++.|.+++.+....|++.++.. ..+.++..+++.|+... ..|-.+.|..+++.-+...+.
T Consensus 753 Lln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 753 FIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred HHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHH
Confidence 777 99999999999999999998876644 23456788888888653 234467888887776665554
Q ss_pred h
Q 003859 606 E 606 (791)
Q Consensus 606 ~ 606 (791)
.
T Consensus 831 ~ 831 (857)
T PRK10865 831 Q 831 (857)
T ss_pred H
Confidence 3
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=6.5e-11 Score=130.22 Aligned_cols=193 Identities=13% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC---Cc-e----E
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG---QK-V----S 445 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~---~~-~----~ 445 (791)
.+..++.|+|++.++..|..++..- ..+..+||+||+|+|||++|+.+|+.+.... .. . .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 5678899999999999999987651 4556799999999999999999999985421 00 0 0
Q ss_pred -----------------EEEEech-hhhh-hh-HhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhh
Q 003859 446 -----------------FYMRKGA-DVLS-KW-VGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIH 501 (791)
Q Consensus 446 -----------------~~~i~~~-~~~~-~~-~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~ 501 (791)
++.+... .... +. ..-....++.+..... .....||||||+|.| .
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 0111000 0000 00 0000122333333222 234569999999988 3
Q ss_pred HHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 003859 502 NSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELA 581 (791)
Q Consensus 502 ~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA 581 (791)
....+.|+..|+. ...++++|..|+.+..+.+.+++ || ..+.|++|+.++...+|........ .+...+..++
T Consensus 155 ~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~ 227 (351)
T PRK09112 155 RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALL 227 (351)
T ss_pred HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHH
Confidence 4556778888885 33455666667778888899988 98 5899999999999999998543222 4466666777
Q ss_pred HHccCCCHHHHHHHHH
Q 003859 582 ASCVGYCGADLKALCT 597 (791)
Q Consensus 582 ~~t~G~s~~di~~l~~ 597 (791)
..+.|- +....+++.
T Consensus 228 ~~s~G~-pr~Al~ll~ 242 (351)
T PRK09112 228 QRSKGS-VRKALLLLN 242 (351)
T ss_pred HHcCCC-HHHHHHHHh
Confidence 767664 444444443
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=3.5e-11 Score=147.28 Aligned_cols=205 Identities=22% Similarity=0.261 Sum_probs=143.8
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..|+|++.+++.|...+... ..|+ .+...+||+||+|||||++|++||..+.... ..++.++++.+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhh
Confidence 46999999999999988652 1122 2335699999999999999999999885433 35566666554
Q ss_pred hhh-----hHhHHHH-----HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--------
Q 003859 455 LSK-----WVGEAER-----QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (791)
Q Consensus 455 ~~~-----~~g~~~~-----~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------- 516 (791)
... .+|.... ....+...+.....+|||||||+.+ +..+++.|+..|+.-.
T Consensus 635 ~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~ 703 (852)
T TIGR03346 635 MEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRT 703 (852)
T ss_pred cccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeE
Confidence 321 1111000 0122334444555679999999876 5678888888886421
Q ss_pred -CCCcEEEeccCCchhh-------------------------hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc---
Q 003859 517 -SRGQVVLIGATNRVDA-------------------------IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--- 567 (791)
Q Consensus 517 -~~~~vivIattn~~~~-------------------------Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~--- 567 (791)
...+++||+|||.... +.|.|.. ||+.++.|.+++.+....|+...+..
T Consensus 704 vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~ 781 (852)
T TIGR03346 704 VDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRK 781 (852)
T ss_pred EecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence 1245788999987211 2356666 99999999999999999999876642
Q ss_pred ------CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh
Q 003859 568 ------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 568 ------~~~~~~~~~~~~LA~~t~--G~s~~di~~l~~~A~~~a~~~ 606 (791)
..+.++.+.++.|+.... .+..+.|.+++.......+..
T Consensus 782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 235678888888988743 678899999999888776664
No 168
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.29 E-value=7.5e-11 Score=125.25 Aligned_cols=133 Identities=23% Similarity=0.298 Sum_probs=88.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec------hhhhhhhHhHHHHH-HH------------------
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG------ADVLSKWVGEAERQ-LK------------------ 467 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~------~~~~~~~~g~~~~~-l~------------------ 467 (791)
..+|||+||||||||++|++||..++ ..++.+++ .++++.+.+..... +.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 46799999999999999999999774 33443433 23333332211110 00
Q ss_pred -HHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--------------CCCcEEEeccCCchh-
Q 003859 468 -LLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------------SRGQVVLIGATNRVD- 531 (791)
Q Consensus 468 -~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--------------~~~~vivIattn~~~- 531 (791)
..+..|.. ...+|||||++.+ ...+++.|+.+|+.-. ....+.||+|+|...
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~ 163 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY 163 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc
Confidence 01112222 2459999999876 3456777777776421 113567999999752
Q ss_pred ----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHH
Q 003859 532 ----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHT 565 (791)
Q Consensus 532 ----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l 565 (791)
.++++|.+ || ..+.++.|+.++-.+|+..++
T Consensus 164 ~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 164 AGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 98 578999999999999999876
No 169
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.28 E-value=7.8e-12 Score=139.25 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=84.2
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
..+.+.|.+++||+.+++++.+++.. |+.++..|..+|+. ++.|+|||||||||||++|++++..+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~---~~~~~~~~~~~g~~---------~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVEL---PLKHPELFEEVGIE---------PPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHH---HhcCHHHHHhcCCC---------CCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45889999999999999999998776 77888888887654 3559999999999999888887764321
Q ss_pred ----chhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 730 ----WRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 730 ----~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+....+...+ ...+..+|..+....||||||||+|.++..+..
T Consensus 183 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~ 233 (364)
T TIGR01242 183 TFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTD 233 (364)
T ss_pred CEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccccc
Confidence 2222222211 245667777888889999999999999876543
No 170
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.1e-10 Score=128.96 Aligned_cols=190 Identities=13% Similarity=0.109 Sum_probs=125.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.++++|+|++.+++.|..++..- ..+..+||+||+|+||+++|.++|+.+-....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 5678999999999999999987651 45667999999999999999999999843210
Q ss_pred ------------------ceEEEEEec--hhhhhhhHh-HHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCch
Q 003859 443 ------------------KVSFYMRKG--ADVLSKWVG-EAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQ 497 (791)
Q Consensus 443 ------------------~~~~~~i~~--~~~~~~~~g-~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~ 497 (791)
+-.++.+.. .+-...... -....++.+...+. ...+.||+|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 001111110 000000000 01223444443332 345779999999977
Q ss_pred hhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 003859 498 EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELK 577 (791)
Q Consensus 498 ~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~ 577 (791)
.....+.|+..++. ....+++|.+|+.++.+.+.+++ |+. .|.|++|+.++..++|...... .....+
T Consensus 154 ---~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~----~~~~~~ 221 (365)
T PRK07471 154 ---NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD----LPDDPR 221 (365)
T ss_pred ---CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc----CCHHHH
Confidence 45677788888884 44566777788888889999988 884 7999999999999998875422 222333
Q ss_pred HHHHHHccCCCHHHHHHHH
Q 003859 578 SELAASCVGYCGADLKALC 596 (791)
Q Consensus 578 ~~LA~~t~G~s~~di~~l~ 596 (791)
..++..+.| ++.....++
T Consensus 222 ~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 222 AALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHcCC-CHHHHHHHh
Confidence 456666655 444444443
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.27 E-value=2.7e-11 Score=147.82 Aligned_cols=204 Identities=20% Similarity=0.237 Sum_probs=140.1
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..|+|++.++..|...+... +.|+ .|...+||+||+|||||+||++||+.+... ...++.++.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~ 578 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEY 578 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhc
Confidence 45999999999999988642 1222 222458999999999999999999988532 245666666554
Q ss_pred hh-----hhHhHHH-----HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--------
Q 003859 455 LS-----KWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (791)
Q Consensus 455 ~~-----~~~g~~~-----~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------- 516 (791)
.. .++|... .....+...++..+.+||||||+|.+ +..+++.|+..|+...
T Consensus 579 ~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 579 MEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred cccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcE
Confidence 32 1111110 01123445555566689999999976 5678888999888532
Q ss_pred -CCCcEEEeccCCchhh-------------------------------------hhhhhcCCCCccccccCCCCCHHHHH
Q 003859 517 -SRGQVVLIGATNRVDA-------------------------------------IDGALRRPGRFDREFNFPLPGCEARA 558 (791)
Q Consensus 517 -~~~~vivIattn~~~~-------------------------------------Ld~aL~r~gRf~~~I~~~~Pd~eer~ 558 (791)
...+++||+|||.... +.|.|+. |++.+|.|.+.+.++..
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~ 725 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVW 725 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHH
Confidence 1346889999885311 2256677 99999999999999999
Q ss_pred HHHHHHHhcC---------CCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHH
Q 003859 559 EILDIHTRKW---------KQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFR 605 (791)
Q Consensus 559 ~IL~~~l~~~---------~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~~ 605 (791)
+|+...+..+ .+..+.++.+.|+... ..|-.+.|..++..-....+.
T Consensus 726 ~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 726 EIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 9998776542 3566778888888863 345577777777766555544
No 172
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=5.2e-11 Score=129.89 Aligned_cols=223 Identities=21% Similarity=0.217 Sum_probs=136.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--CceEEEEEe-
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRK- 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~i~- 450 (791)
+...|.+|+|+++.|..|...+..| ...+|||+|++|||||++|++++..+.... ...+|....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4678999999999999998776553 235899999999999999999998885321 011111000
Q ss_pred chhhh-----hh---------------h----HhHHHHH------HHHHHHHHH---------hcCCeEEEEeCCCccCC
Q 003859 451 GADVL-----SK---------------W----VGEAERQ------LKLLFEEAQ---------RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 451 ~~~~~-----~~---------------~----~g~~~~~------l~~lf~~a~---------~~~p~VL~IDEiD~L~~ 491 (791)
...++ .. + .+..+.. +...|.... .....||||||++.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 00000 00 0 0001111 111111110 111359999999887
Q ss_pred CCCCchhhhhHHHHHHHHHHHhcc-----------CCCCcEEEeccCCchh-hhhhhhcCCCCccccccCCCCC-HHHHH
Q 003859 492 VRSSKQEQIHNSIVSTLLALMDGL-----------DSRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPG-CEARA 558 (791)
Q Consensus 492 ~~~~~~~~~~~~v~~~Ll~~l~~~-----------~~~~~vivIattn~~~-~Ld~aL~r~gRf~~~I~~~~Pd-~eer~ 558 (791)
...++..|+..|+.- ....++++|+|.|..+ .++++|.. ||...|.+..|+ .+.+.
T Consensus 157 ---------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 157 ---------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 356677788877531 1234688888888755 58999999 999999999997 58999
Q ss_pred HHHHHHHhcC-----------------------------CCCCCHHHHHHH---HHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 559 EILDIHTRKW-----------------------------KQPPSRELKSEL---AASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 559 ~IL~~~l~~~-----------------------------~~~~~~~~~~~L---A~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
+|++...... .+..++.++..+ +..+.--+++.-..+++.|...|...
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 226 KIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred HHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 9998753210 112233333333 23333335566666666666666665
Q ss_pred hCCCccCCCccccccccccceeHHHHHHHhcc
Q 003859 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (791)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~ 638 (791)
... .|+.+|+..+..-
T Consensus 306 GR~----------------~V~pdDv~~~a~~ 321 (350)
T CHL00081 306 GRT----------------EVTPKDIFKVITL 321 (350)
T ss_pred CCC----------------CCCHHHHHHHHHH
Confidence 432 4788888877643
No 173
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.27 E-value=7e-11 Score=112.15 Aligned_cols=140 Identities=40% Similarity=0.647 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH
Q 003859 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA 462 (791)
Q Consensus 383 G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~ 462 (791)
|.+.++..+...+.. ....+++|+||||||||++++.++..+.... ..++.+++...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 66 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAE 66 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHH
Confidence 556666677665533 2456899999999999999999999985333 4455555554443322221
Q ss_pred HHH---HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC----CCcEEEeccCCchh--hh
Q 003859 463 ERQ---LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----RGQVVLIGATNRVD--AI 533 (791)
Q Consensus 463 ~~~---l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~----~~~vivIattn~~~--~L 533 (791)
... ....+.......+.+|+|||++.+. ......++..+..+.. ...+.+|+++|... .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~ 135 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhh-----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCc
Confidence 111 1222233444567899999998762 2233445555554432 35788888888766 67
Q ss_pred hhhhcCCCCccccccCC
Q 003859 534 DGALRRPGRFDREFNFP 550 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~ 550 (791)
++.+.. ||...|.++
T Consensus 136 ~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 136 DRALYD--RLDIRIVIP 150 (151)
T ss_pred ChhHHh--hhccEeecC
Confidence 777877 887777665
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.27 E-value=5e-11 Score=118.85 Aligned_cols=194 Identities=17% Similarity=0.174 Sum_probs=130.7
Q ss_pred cccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 370 ~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
+....+..+.+|+|.++.++.|.-+... ..-.+++|.|||||||||.+.+||+++-...+.-.++.+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 3445677899999999999999776544 233479999999999999999999998543344445566
Q ss_pred echhhhhhhHhHHHHHHHHHHHHHH-h---cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec
Q 003859 450 KGADVLSKWVGEAERQLKLLFEEAQ-R---NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (791)
Q Consensus 450 ~~~~~~~~~~g~~~~~l~~lf~~a~-~---~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa 525 (791)
++++--+- ......+ ..|..-+ . +...||+|||+|.+. .-.+..|-..|+-+.. ..-++.
T Consensus 85 NASdeRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~--ttRFal 148 (333)
T KOG0991|consen 85 NASDERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSN--TTRFAL 148 (333)
T ss_pred cCcccccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcc--cchhhh
Confidence 65543221 1111222 2333322 1 223599999999884 2334455556664433 345566
Q ss_pred cCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHH
Q 003859 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKAL 595 (791)
Q Consensus 526 ttn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l 595 (791)
++|..+.+-..+.+ ||. .+.|...+..+...-|....+...+..+.+-++.+.-.+.|-....|.+|
T Consensus 149 aCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred hhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 78888888888888 884 68888888888887777777777777777777777777777444444443
No 175
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.1e-10 Score=127.48 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=120.9
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC---CceEEEEEechh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG---QKVSFYMRKGAD 453 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~---~~~~~~~i~~~~ 453 (791)
+|++|+|++.+++.|...+.. -..+..+||+||+|+|||++|+++|+.+.... .+..++.+....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999988754 14556789999999999999999999874321 122232332210
Q ss_pred hhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 454 VLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
+.. -....++.+...+. ....-|++||++|.+ .....+.|+..|+. +...+++|.+|+.
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe--pp~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE--PPKGVFIILLCEN 132 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC--CCCCeEEEEEeCC
Confidence 010 01123444444332 233569999999877 34567789999984 4556666666778
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s 588 (791)
++.+.+.+++ |+. .+.|+.|+.++...+|...+. ..+...+..++..+.|-.
T Consensus 133 ~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 133 LEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIP 184 (313)
T ss_pred hHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCH
Confidence 8999999998 885 799999999998888876554 234455566776666643
No 176
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-11 Score=141.48 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=82.4
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH----
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF---- 726 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~---- 726 (791)
...+.|.|+.|.++..+++.+.++- ++.+..|.++|.. .|.|+||+||||||||+||++.+..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf----Lk~p~ky~~lGak---------iPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF----LKNPKKYQALGAK---------IPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH----HhCchhhHhcccc---------cccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3568999999987555555555444 6778888888653 3559999999999999666665543
Q ss_pred HcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 727 YMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 727 ~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
||...++.|.-.++ ..++.+|.+|.+.+||||||||||..-.++...
T Consensus 211 Ff~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g 261 (596)
T COG0465 211 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 261 (596)
T ss_pred ceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC
Confidence 45555566655554 667778888999999999999999999988543
No 177
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.22 E-value=1.8e-10 Score=125.74 Aligned_cols=216 Identities=23% Similarity=0.182 Sum_probs=132.1
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-------CC---ceEE
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-------GQ---KVSF 446 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------~~---~~~~ 446 (791)
.|..|+|++.+|..|.-.+..| ...++||.|++|+|||+|+++|+..+... .. .-++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4788999999999886655432 23579999999999999999999887310 00 0000
Q ss_pred -EEEechh-------------------hh-----hhhHhHH--HHHH--------HHHHHHHHhcCCeEEEEeCCCccCC
Q 003859 447 -YMRKGAD-------------------VL-----SKWVGEA--ERQL--------KLLFEEAQRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 447 -~~i~~~~-------------------~~-----~~~~g~~--~~~l--------~~lf~~a~~~~p~VL~IDEiD~L~~ 491 (791)
+..+|.. +- ...+|.. ...+ ..++..+ ...+|||||++.|
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC--
Confidence 0000000 00 0111111 0000 0111112 2359999999987
Q ss_pred CCCCchhhhhHHHHHHHHHHHhccC-----------CCCcEEEeccCCchh-hhhhhhcCCCCccccccCCCCCH-HHHH
Q 003859 492 VRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPGC-EARA 558 (791)
Q Consensus 492 ~~~~~~~~~~~~v~~~Ll~~l~~~~-----------~~~~vivIattn~~~-~Ld~aL~r~gRf~~~I~~~~Pd~-eer~ 558 (791)
...++..|+..|+.-. ...++++|++.|..+ .++++|.. ||...+.++.|.. +++.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 3567777888775321 124688888888655 58999999 9999999999976 8888
Q ss_pred HHHHHHHhc-----------------------------CCCCCCHHHHHHH---HHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 559 EILDIHTRK-----------------------------WKQPPSRELKSEL---AASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 559 ~IL~~~l~~-----------------------------~~~~~~~~~~~~L---A~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
+|++..... .....++.++..+ +..+..-+++.-..+++.|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 998874321 0112333333333 33344335566666777777777765
Q ss_pred hCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
... .|+.+|+..++.
T Consensus 293 GR~----------------~V~~dDv~~~a~ 307 (337)
T TIGR02030 293 GRT----------------EVTVDDIRRVAV 307 (337)
T ss_pred CCC----------------CCCHHHHHHHHH
Confidence 443 488888887654
No 178
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=9.4e-10 Score=117.17 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=119.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE-Ee----chhhhhhh---HhH------HH---HHHHHHH-HHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM-RK----GADVLSKW---VGE------AE---RQLKLLF-EEAQR 475 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~-i~----~~~~~~~~---~g~------~~---~~l~~lf-~~a~~ 475 (791)
..++|+||+|+|||++++.++..+.... +.+.. ++ ...++... .|. .. ..+...+ .....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3588999999999999999998875321 21111 11 11221111 110 01 1222222 22335
Q ss_pred cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-CCCcEEEeccCCc--hhhhh----hhhcCCCCcccccc
Q 003859 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNR--VDAID----GALRRPGRFDREFN 548 (791)
Q Consensus 476 ~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-~~~~vivIattn~--~~~Ld----~aL~r~gRf~~~I~ 548 (791)
..+.||+|||++.+.. ..+..|..+.+... ....+.||++... ...+. ..+.+ |+...+.
T Consensus 122 ~~~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP-----------ELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CCCeEEEEECcccCCH-----------HHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 5678999999998741 12223322222111 1222333333322 21221 23445 7777889
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccc
Q 003859 549 FPLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDS 624 (791)
Q Consensus 549 ~~~Pd~eer~~IL~~~l~~~~----~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~ 624 (791)
+++.+.++...++...+...+ ...+.+.+..|+..+.|.. ..|..+|..|...|.....
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~---------------- 251 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK---------------- 251 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC----------------
Confidence 999999999999998887543 3467788899999999985 5599999999998887543
Q ss_pred cceeHHHHHHHhcccc
Q 003859 625 VTVEKYHFIEAMSTIT 640 (791)
Q Consensus 625 ~~lt~~df~~Al~~~~ 640 (791)
..|+.+++..++..+.
T Consensus 252 ~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 REIGGEEVREVIAEID 267 (269)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 2488899998887653
No 179
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.22 E-value=2.1e-10 Score=115.74 Aligned_cols=148 Identities=22% Similarity=0.249 Sum_probs=101.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc---------------------CCceEEEEEechhhhhhhHhHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA---------------------GQKVSFYMRKGADVLSKWVGEAERQLKLL 469 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~---------------------~~~~~~~~i~~~~~~~~~~g~~~~~l~~l 469 (791)
..+..+|||||+|+|||++|++++..+... ...+.++......+ ....++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~-------~~~~i~~i 84 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI-------KVDQVREL 84 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC-------CHHHHHHH
Confidence 345679999999999999999999998532 11122222221111 12344444
Q ss_pred HHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccc
Q 003859 470 FEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDR 545 (791)
Q Consensus 470 f~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~ 545 (791)
+..+.. ....||||||+|.|. ...++.|+..|+.. ....++|++|+.+..+.+++.+ |+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-
Confidence 444433 335699999999884 34566788888853 3455666667777899999998 884
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC
Q 003859 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (791)
Q Consensus 546 ~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~ 587 (791)
.+.|++|+.++...+|... + .+.+.+..|+..+.|-
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 7999999999999998876 2 4556667777777663
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.21 E-value=3.3e-11 Score=139.45 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=78.0
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH---
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY--- 727 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~--- 727 (791)
.+.++|.+++|++...+++.+++.. +.++..|.++|. ..+.|+|||||||||||++|++++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~----l~~~~~~~~~g~---------~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF----LKNPSKFTKLGA---------KIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH----HHCHHHHHhcCC---------CCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999998777777665543 345566666543 335599999999999998888777643
Q ss_pred -cCchhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 728 -MNWRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 728 -~~~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+......+.... ...++.+|..|...+||||||||||.++..++.
T Consensus 116 ~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~ 165 (495)
T TIGR01241 116 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 165 (495)
T ss_pred eeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhcccc
Confidence 112222222211 145677888898899999999999999987764
No 181
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=9.5e-10 Score=120.10 Aligned_cols=247 Identities=19% Similarity=0.152 Sum_probs=163.0
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh--
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-- 455 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~-- 455 (791)
-..++|.+.....+++++..++. ...+.++++.|-||||||.+..-+-..+...+..+..++++|..+-
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 45689999999999999877532 3567789999999999999999888887777666666777776422
Q ss_pred ----hhhHhH---------HHHHHHHHHHHHH-hc-CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc
Q 003859 456 ----SKWVGE---------AERQLKLLFEEAQ-RN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (791)
Q Consensus 456 ----~~~~g~---------~~~~l~~lf~~a~-~~-~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~ 520 (791)
.+..+. ........|..-. .. .+-||++||+|.|+.. .+.++..|+.|-. ..+.+
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr--------~~~vLy~lFewp~--lp~sr 289 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR--------SQTVLYTLFEWPK--LPNSR 289 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc--------ccceeeeehhccc--CCcce
Confidence 111111 1122233343322 22 2679999999999843 4556667776655 35678
Q ss_pred EEEeccCCchhhhhhhhcC----CCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHccCCCHHHH--H
Q 003859 521 VVLIGATNRVDAIDGALRR----PGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSR-ELKSELAASCVGYCGADL--K 593 (791)
Q Consensus 521 vivIattn~~~~Ld~aL~r----~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~-~~~~~LA~~t~G~s~~di--~ 593 (791)
+++|+.+|..+.-|..|-+ .+.-...+.|++++.++..+||...+......... ..+..+|....|.||.-- -
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 9999999998765544421 23345678999999999999999999886554333 255677888888776332 2
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
.+|+.|...+-.............-....+...|...++..++..+..+.
T Consensus 370 dv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 34777777776654432111111111112234577888888887766544
No 182
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=7.1e-11 Score=126.90 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh--hHhHHH----------HHHHHHHHHHHhcCCe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--WVGEAE----------RQLKLLFEEAQRNQPS 479 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~--~~g~~~----------~~l~~lf~~a~~~~p~ 479 (791)
...+|||.||||||||++|+.||..++. +++.+++...+.. ++|... ......+..|.. .++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~ 136 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNV 136 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCe
Confidence 3467999999999999999999999963 4444444322221 222211 011122333332 467
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc------------cCCCCcEEEeccCCchh------------hhhh
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG------------LDSRGQVVLIGATNRVD------------AIDG 535 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~------------~~~~~~vivIattn~~~------------~Ld~ 535 (791)
+||||||+..- ..++..|..+|+. +.....+.||||+|... .++.
T Consensus 137 illlDEin~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 137 ALCFDEYDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EEEechhhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 89999999763 3455555555552 11234688999999854 3689
Q ss_pred hhcCCCCccccccCCCCCHHHHHHHHHHHHhc
Q 003859 536 ALRRPGRFDREFNFPLPGCEARAEILDIHTRK 567 (791)
Q Consensus 536 aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~ 567 (791)
+++. ||..++.+..|+.++-.+||......
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 9999 99878899999999999999876544
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.18 E-value=4.9e-10 Score=120.39 Aligned_cols=105 Identities=24% Similarity=0.171 Sum_probs=68.7
Q ss_pred CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc------------hhhhhhhhcCCCCccc
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~------------~~~Ld~aL~r~gRf~~ 545 (791)
|.||||||+|.| .-...+.|-.+|+. ...+ +||.+||+ |.-+|..|+. |+ .
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs--~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES--ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD--RL-L 341 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS--TT---EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-E
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC--CCCc-EEEEecCceeeeccCccCcCCCCCCcchHh--hc-E
Confidence 789999999987 33445556666662 2334 55556663 4568888888 88 4
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 003859 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (791)
Q Consensus 546 ~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A 599 (791)
+|...+++.++..+||+..+....+.++.+.++.|+......+-+...+|+.-|
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 788999999999999999999999999999988888777767766666666544
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=99.13 E-value=9.7e-10 Score=131.58 Aligned_cols=161 Identities=20% Similarity=0.130 Sum_probs=122.8
Q ss_pred eEEEEc--CCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhc------CCeEEEEeCC
Q 003859 415 GVLLCG--PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN------QPSIIFFDEI 486 (791)
Q Consensus 415 ~vLL~G--ppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~------~p~VL~IDEi 486 (791)
+-+..| |++.||||+|++||+++....+...++.+++++..+. ..++.++..+... ...||||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 345668 9999999999999999855555678999999874321 2344444433222 2359999999
Q ss_pred CccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh
Q 003859 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (791)
Q Consensus 487 D~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~ 566 (791)
|.|. ...++.|+..|+. ....+.+|++||.+..+.++|++ || ..+.|++|+.++...+|+..+.
T Consensus 640 D~Lt-----------~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 640 DALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ccCC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 9883 4567789999984 35678889999999999999998 98 4799999999999999999988
Q ss_pred cCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 003859 567 KWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (791)
Q Consensus 567 ~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~ 598 (791)
..++..+.+.+..|+..+.|-....| ++++.
T Consensus 704 ~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~ 734 (846)
T PRK04132 704 NEGLELTEEGLQAILYIAEGDMRRAI-NILQA 734 (846)
T ss_pred hcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHH
Confidence 77777788888999998888443333 44443
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=6.8e-10 Score=120.57 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=123.4
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------Cc
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------------QK 443 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------~~ 443 (791)
.|++|+|++.+++.|...+..- ..+..+||+||+|+||+++|.++|+.+.... .+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999988651 4567899999999999999999999974321 11
Q ss_pred eEEEEEechhhh-h-----h---hHh-------H-HHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhH
Q 003859 444 VSFYMRKGADVL-S-----K---WVG-------E-AERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (791)
Q Consensus 444 ~~~~~i~~~~~~-~-----~---~~g-------~-~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~ 502 (791)
-.++.+...... + . ..| . ....++.+...+.. ....|++||++|.| ..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 111222111000 0 0 000 0 01234555444432 33569999999987 35
Q ss_pred HHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003859 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (791)
Q Consensus 503 ~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~ 582 (791)
...+.||..|+... +.++|.+|+.++.|.+.+++ |+. .|.|++|+.++..++|......... +. ....++.
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~-~~~~l~~ 209 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NI-NFPELLA 209 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hh-HHHHHHH
Confidence 56778999998643 34666677788999999998 884 7999999999999999876432111 11 1346666
Q ss_pred HccCCCHHHHHHHHH
Q 003859 583 SCVGYCGADLKALCT 597 (791)
Q Consensus 583 ~t~G~s~~di~~l~~ 597 (791)
.+.|- ++.+.+++.
T Consensus 210 ~a~Gs-~~~al~~l~ 223 (314)
T PRK07399 210 LAQGS-PGAAIANIE 223 (314)
T ss_pred HcCCC-HHHHHHHHH
Confidence 66664 444444443
No 186
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=1.7e-09 Score=123.29 Aligned_cols=211 Identities=20% Similarity=0.221 Sum_probs=142.7
Q ss_pred cccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhh----h-------------------cCCCCCceEEEEcCCCChH
Q 003859 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFA----S-------------------YHITPPRGVLLCGPPGTGK 426 (791)
Q Consensus 370 ~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~----~-------------------~g~~~~~~vLL~GppGtGK 426 (791)
+....+..|.+|.|-+.+=..+..++.+- .+.+|. + .+-++.+-+|||||||.||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 34445778999999999888887777431 333333 1 1112335689999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhH
Q 003859 427 TLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (791)
Q Consensus 427 T~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~ 502 (791)
||||+.||+++| ..++.+++++--+. ......+..+...-. ...|.+|+|||||.- ..
T Consensus 340 TTLAHViAkqaG-----YsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~ 401 (877)
T KOG1969|consen 340 TTLAHVIAKQAG-----YSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PR 401 (877)
T ss_pred hHHHHHHHHhcC-----ceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cH
Confidence 999999999996 67788888764332 222233333322211 246899999999833 23
Q ss_pred HHHHHHHHHHhcc------CCC-------------CcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHH
Q 003859 503 SIVSTLLALMDGL------DSR-------------GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI 563 (791)
Q Consensus 503 ~v~~~Ll~~l~~~------~~~-------------~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~ 563 (791)
..+..++.++..- ... -.-.||+.+|. .--|+|+----|..+|.|.+|...-..+-|+.
T Consensus 402 ~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 402 AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNE 479 (877)
T ss_pred HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHH
Confidence 4555566555421 000 01256677776 34456643225888999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 564 HTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 564 ~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
++.......+...+..|+..|.+ ||++.++.....+...
T Consensus 480 IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 480 ICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred HHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 99988888888888888888775 8888888777776654
No 187
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.11 E-value=4.9e-10 Score=133.01 Aligned_cols=159 Identities=30% Similarity=0.339 Sum_probs=102.2
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----------------
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA---------------- 440 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---------------- 440 (791)
.|..|+|++.++..|.-++..+ ...+|||+|++|||||++|++|+..+...
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999998886655432 12479999999999999999999887210
Q ss_pred --------------CCceEEEEEechhhhhhhHhHH--HHHH--------HHHHHHHHhcCCeEEEEeCCCccCCCCCCc
Q 003859 441 --------------GQKVSFYMRKGADVLSKWVGEA--ERQL--------KLLFEEAQRNQPSIIFFDEIDGLAPVRSSK 496 (791)
Q Consensus 441 --------------~~~~~~~~i~~~~~~~~~~g~~--~~~l--------~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~ 496 (791)
....+|+.+.+.......+|.. ...+ ..++..| ...|||||||+.|
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-------
Confidence 0023444443332222222211 1111 0111111 2349999999987
Q ss_pred hhhhhHHHHHHHHHHHhccC-----------CCCcEEEeccCCchh-hhhhhhcCCCCccccccCCCCC-HHHHHHHHHH
Q 003859 497 QEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPG-CEARAEILDI 563 (791)
Q Consensus 497 ~~~~~~~v~~~Ll~~l~~~~-----------~~~~vivIattn~~~-~Ld~aL~r~gRf~~~I~~~~Pd-~eer~~IL~~ 563 (791)
...++..|+..|+.-. ....++||+|+|..+ .+.++|.. ||...|.++.|. .+++.+|++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 4567788888886321 124589999988643 58889998 999888888774 5777777765
Q ss_pred H
Q 003859 564 H 564 (791)
Q Consensus 564 ~ 564 (791)
.
T Consensus 213 ~ 213 (633)
T TIGR02442 213 R 213 (633)
T ss_pred H
Confidence 3
No 188
>CHL00176 ftsH cell division protein; Validated
Probab=99.10 E-value=1.8e-10 Score=135.40 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=75.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH----
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY---- 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~---- 727 (791)
..++|.+++|+....+++.+.+.. +..+..|..+|.. .+.|+||+||||||||++|++++...
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~----lk~~~~~~~~g~~---------~p~gVLL~GPpGTGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF----LKKPERFTAVGAK---------IPKGVLLVGPPGTGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH----HhCHHHHhhccCC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 468999999997777666655443 4556666666543 35599999999999998888776643
Q ss_pred cCchhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 728 MNWRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 728 ~~~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+......+.... ...++.+|..|...+||||||||||.+++.+.
T Consensus 245 i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 292 (638)
T CHL00176 245 FSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRG 292 (638)
T ss_pred eeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhccc
Confidence 111222221111 24566788889999999999999999998764
No 189
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.10 E-value=5.3e-11 Score=128.04 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCCCCCcEEEecCCCCChhHHHHHHHHHH----cCchhHHHHHHHH----HHHHHHhhhhhc-----CCceEEEEeCchh
Q 003859 699 PLVYRPRLLLCGSEGTGVFNRIILGLQFY----MNWRNFLFILLVF----QLFFQILVPRHQ-----RRHWCIYLVKLEE 765 (791)
Q Consensus 699 ~l~~~~g~Ll~GPPGtGKT~la~~~~~~~----~~~~~~~l~~d~~----e~~~~~~~~a~~-----~~P~ivfldeid~ 765 (791)
+++.+.++|||||||||||+++++++..+ +.+..+.|...+. ++++++|..|.. .+||||||||||+
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 44555599999999999996666665542 2233333333222 677778877764 4799999999999
Q ss_pred hccccc
Q 003859 766 QRHQYS 771 (791)
Q Consensus 766 ~a~~~~ 771 (791)
++..+.
T Consensus 224 ~~g~r~ 229 (413)
T PLN00020 224 GAGRFG 229 (413)
T ss_pred cCCCCC
Confidence 999885
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=1.7e-09 Score=118.58 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=108.0
Q ss_pred CCCccCC-cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--------------
Q 003859 377 SFDDIGG-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------------- 441 (791)
Q Consensus 377 ~~~~l~G-~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------- 441 (791)
.|+.|+| ++.+++.|...+.. -..+..+||+||+|+|||++|+++|+.+....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3677877 88899999888754 14566789999999999999999999974321
Q ss_pred -------CceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 442 -------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
..+.++..++.. -....++.+...+. ....-|+|||++|.+ .....+.|+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~-------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQS-------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEecccccc-------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHH
Confidence 122222221111 01234444444433 123459999999877 4556788999
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI 563 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~ 563 (791)
.|+. +...+++|.+|+.+..|.+.+++ |+. .|.|++|+.++...+|+.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 9994 45677777788888899999998 884 799999999998777764
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=7.6e-10 Score=123.20 Aligned_cols=146 Identities=24% Similarity=0.389 Sum_probs=92.5
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc--CCceEEEEEech---
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKGA--- 452 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~i~~~--- 452 (791)
++++.+.+..++.+...+. ...+++|+||||||||++|+.||..+... ...+.++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5677777877777766543 34689999999999999999999988532 123334443322
Q ss_pred -hhhhhhHhH------HHHHHHHHHHHHHhc--CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc---------
Q 003859 453 -DVLSKWVGE------AERQLKLLFEEAQRN--QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--------- 514 (791)
Q Consensus 453 -~~~~~~~g~------~~~~l~~lf~~a~~~--~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~--------- 514 (791)
+++..+... ....+..++..|... .|+|||||||+..- ...+...++.+|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhccccccccccce
Confidence 222111000 011233444555543 47999999998653 23344444444441
Q ss_pred -----------cCCCCcEEEeccCCchh----hhhhhhcCCCCccccccCCC
Q 003859 515 -----------LDSRGQVVLIGATNRVD----AIDGALRRPGRFDREFNFPL 551 (791)
Q Consensus 515 -----------~~~~~~vivIattn~~~----~Ld~aL~r~gRf~~~I~~~~ 551 (791)
+....++.||||+|..+ .+|.||+| ||. .|.+.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 23346799999999987 79999999 995 455554
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.08 E-value=1.3e-09 Score=122.25 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=92.0
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~ 459 (791)
.|+|.+++++.+..++. ...+|||+||||||||++|++|+..+.... .+.++.+... .....+
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft-tp~DLf 83 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS-TPEEVF 83 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec-CcHHhc
Confidence 47899998888876653 346899999999999999999999875432 1122222110 011222
Q ss_pred hHH-HHHH--HHHHHHHHhc---CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--C------CCcEEEec
Q 003859 460 GEA-ERQL--KLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S------RGQVVLIG 525 (791)
Q Consensus 460 g~~-~~~l--~~lf~~a~~~---~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~------~~~vivIa 525 (791)
|.. -... ...|.....+ ...|||+|||..+ ...+++.|+..|+.-. . -...++++
T Consensus 84 G~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 84 GPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred CcHHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 211 0000 1122211111 2349999999755 5678888999985321 0 11124444
Q ss_pred cCCchh---hhhhhhcCCCCccccccCCCCC-HHHHHHHHHHH
Q 003859 526 ATNRVD---AIDGALRRPGRFDREFNFPLPG-CEARAEILDIH 564 (791)
Q Consensus 526 ttn~~~---~Ld~aL~r~gRf~~~I~~~~Pd-~eer~~IL~~~ 564 (791)
|||... ...+++.. ||...|.+|+|+ .++..+||...
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 446321 12247887 998889999997 45667787653
No 193
>PHA02244 ATPase-like protein
Probab=99.07 E-value=2.5e-09 Score=116.19 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=78.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHh---HHHHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVG---EAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g---~~~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
...+|||+||||||||+||++||..++ .+|+.++...-.....| ........-|-.+. ....+|||||++.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg-----~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~ 191 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALD-----LDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDA 191 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCc
Confidence 345799999999999999999999985 45555553211001111 00000111122222 2356999999987
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHhc---------cCCCCcEEEeccCCch-----------hhhhhhhcCCCCcccccc
Q 003859 489 LAPVRSSKQEQIHNSIVSTLLALMDG---------LDSRGQVVLIGATNRV-----------DAIDGALRRPGRFDREFN 548 (791)
Q Consensus 489 L~~~~~~~~~~~~~~v~~~Ll~~l~~---------~~~~~~vivIattn~~-----------~~Ld~aL~r~gRf~~~I~ 548 (791)
+. ..++..|..+++. +.....+.||+|+|.+ ..|+++++. ||. .|+
T Consensus 192 a~-----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~ 257 (383)
T PHA02244 192 SI-----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIE 257 (383)
T ss_pred CC-----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-Eee
Confidence 73 3445555555542 1223578999999973 457999999 995 699
Q ss_pred CCCCCHHH
Q 003859 549 FPLPGCEA 556 (791)
Q Consensus 549 ~~~Pd~ee 556 (791)
|..|+..+
T Consensus 258 ~dyp~~~E 265 (383)
T PHA02244 258 FDYDEKIE 265 (383)
T ss_pred CCCCcHHH
Confidence 99998433
No 194
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-10 Score=127.09 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=83.8
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCC-cEEEecCCCCChhHHHHHHHH---
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRP-RLLLCGSEGTGVFNRIILGLQ--- 725 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~-g~Ll~GPPGtGKT~la~~~~~--- 725 (791)
....|.|.+++||+...+-+.+.+.. |+.++..|..+ +.++ |+||.||||||||.|++++|.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~---p~lr~d~F~gl-----------r~p~rglLLfGPpgtGKtmL~~aiAsE~~ 211 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVIL---PLLRPDLFLGL-----------REPVRGLLLFGPPGTGKTMLAKAIATESG 211 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhh---cccchHhhhcc-----------ccccchhheecCCCCchHHHHHHHHhhhc
Confidence 34679999999985444444443322 77777766654 2233 999999999999966665554
Q ss_pred -HHcCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccccccccccccccc
Q 003859 726 -FYMNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFGGRTHM 784 (791)
Q Consensus 726 -~~~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~~~~~~ 784 (791)
.||+.....|...+. .+++.+|.-|+..+|+||||||||++.-.+ ....|...||+
T Consensus 212 atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R---s~~e~e~srr~ 272 (428)
T KOG0740|consen 212 ATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR---SDNEHESSRRL 272 (428)
T ss_pred ceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc---CCcccccchhh
Confidence 355556555554442 667788889999999999999999999988 44556665554
No 195
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.6e-09 Score=118.44 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=105.3
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------------
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------------ 441 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------------ 441 (791)
+++|.+.+...+...+... + ..+..+||+||||+|||++|.++|+.+....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5677777777777766531 1 2333599999999999999999999996432
Q ss_pred -CceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC
Q 003859 442 -QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (791)
Q Consensus 442 -~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~ 516 (791)
.+-.++.++.++....- .....++.+...... ...-||+|||+|.| .....+.|+..++ .
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lE--e 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLE--E 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhc--c
Confidence 23456666665443321 123334444333322 23569999999988 4567788888888 4
Q ss_pred CCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHH
Q 003859 517 SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILD 562 (791)
Q Consensus 517 ~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~ 562 (791)
.....++|.+||.+..+-+.+++ |+. .|.|++|+.......++
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 56677888889999999999998 885 68888766655554444
No 196
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.02 E-value=5.2e-10 Score=122.92 Aligned_cols=152 Identities=26% Similarity=0.287 Sum_probs=97.8
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh-----
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL----- 455 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~----- 455 (791)
++|.++++..+...+.. ..++||.||||||||+||+++|..++ ..|+.+.+...+
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~-----~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALG-----LPFVRIQCTPDLLPSDL 85 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhC-----CCeEEEecCCCCCHHHh
Confidence 67777777766555432 46799999999999999999999996 455555554332
Q ss_pred -hhhHhHHHHHHHHHHHHHHh--cCC--eEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc----------cCCCCc
Q 003859 456 -SKWVGEAERQLKLLFEEAQR--NQP--SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG----------LDSRGQ 520 (791)
Q Consensus 456 -~~~~g~~~~~l~~lf~~a~~--~~p--~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~----------~~~~~~ 520 (791)
+.+.-.....-...|..... ... +|||+|||+.. ...+++.|+..|+. +.-...
T Consensus 86 ~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~ 154 (329)
T COG0714 86 LGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPP 154 (329)
T ss_pred cCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence 22211111000000000000 001 39999999865 45678888888876 233467
Q ss_pred EEEeccCCc-----hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHH
Q 003859 521 VVLIGATNR-----VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHT 565 (791)
Q Consensus 521 vivIattn~-----~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l 565 (791)
++||+|+|. ...|+.++++ ||...++++.|+.++-..++....
T Consensus 155 f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 155 FIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred CEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 899999993 4468999999 998889999995544444444333
No 197
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=4.5e-09 Score=114.81 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=104.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------------CceEEEEEechhhhhhhHhHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-------------------QKVSFYMRKGADVLSKWVGEAERQLKLLFE 471 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~ 471 (791)
..+..+||+||+|+|||++|+++|+.+.... .+-.++.+..... +. .-....++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 4566899999999999999999999985321 1112222221100 00 011234455544
Q ss_pred HHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccc
Q 003859 472 EAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (791)
Q Consensus 472 ~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I 547 (791)
.+.. ...-|++||++|.| .....+.|+..|+. +..++++|.+|+.++.|.+.+++ |+. .|
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-QQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-ee
Confidence 4432 33569999999988 45678889999994 45678888999999999999999 996 59
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 003859 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (791)
Q Consensus 548 ~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s 588 (791)
.|++|+.++....|...... ........++..+.|-.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~----~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE----SDERERIELLTLAGGSP 197 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc----CChHHHHHHHHHcCCCH
Confidence 99999999988888765421 23333345566666643
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=1.9e-09 Score=101.11 Aligned_cols=131 Identities=33% Similarity=0.459 Sum_probs=77.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh--------------hHhHHHHHHHHHHHHHHhcCC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--------------WVGEAERQLKLLFEEAQRNQP 478 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~--------------~~g~~~~~l~~lf~~a~~~~p 478 (791)
+.+++|+||||||||++++.+|..+..... .++.+++...... ........+..++..+....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCC--CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 357999999999999999999999865432 2344444322211 112344456677888887778
Q ss_pred eEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc-hhhhhhhhcCCCCccccccCCCC
Q 003859 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDAIDGALRRPGRFDREFNFPLP 552 (791)
Q Consensus 479 ~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~-~~~Ld~aL~r~gRf~~~I~~~~P 552 (791)
.||||||++.+....... ...................+.+|+++|. ....+..+.. |++..+.+..+
T Consensus 80 ~viiiDei~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 80 DVLILDEITSLLDAEQEA-----LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred CEEEEECCcccCCHHHHH-----HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 899999999886421100 0000000001111123456777788875 3344555555 77766766544
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=5.2e-09 Score=122.43 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=118.3
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc-eEEE---
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK-VSFY--- 447 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~-~~~~--- 447 (791)
...+.++++|+|.+..+..|..++.... ++..+...++|+||||||||++++.||..++..... .+.+
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 3467889999999999999998875421 122334569999999999999999999988643211 1100
Q ss_pred EEe-c----hhh---hhhhHhHHHHHHHHHHHHHH----------hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHH
Q 003859 448 MRK-G----ADV---LSKWVGEAERQLKLLFEEAQ----------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (791)
Q Consensus 448 ~i~-~----~~~---~~~~~g~~~~~l~~lf~~a~----------~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll 509 (791)
... . ..+ +..+ ......+..++..+. .....|||||||+.++.. ....+..++
T Consensus 149 ~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lL 219 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEIL 219 (637)
T ss_pred ccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHH
Confidence 000 0 000 0001 112233344444443 124569999999987632 112333444
Q ss_pred HHHhccCCCCcEEEeccCC-chh--------------hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCC----
Q 003859 510 ALMDGLDSRGQVVLIGATN-RVD--------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ---- 570 (791)
Q Consensus 510 ~~l~~~~~~~~vivIattn-~~~--------------~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~---- 570 (791)
.++- ...+.+.||++++ .+. .|.++|+...|+ .+|.|.+.+.......|..++.....
T Consensus 220 r~~~--~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 220 RWKY--VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHh--hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 4111 1133333333332 111 134677643344 36899999999988888877765321
Q ss_pred ---CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 571 ---PPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 571 ---~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
..+.+.+..|+..+.| ||+.++...-..+
T Consensus 297 ~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~ 328 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSG----DIRSAINSLQFSS 328 (637)
T ss_pred ccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHH
Confidence 1234566778776655 7766665444433
No 200
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.98 E-value=3.6e-09 Score=115.93 Aligned_cols=194 Identities=20% Similarity=0.159 Sum_probs=117.3
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh--
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-- 458 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~-- 458 (791)
|+|.......+.+.+... ......|||+|++||||+++|++|....... ..+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~~~~~l~ 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAALSENLLD 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCCChHHHH
Confidence 456666666666665442 1345679999999999999999998765432 4688888887543221
Q ss_pred ---HhHHHH-------HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---------CCC
Q 003859 459 ---VGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRG 519 (791)
Q Consensus 459 ---~g~~~~-------~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---------~~~ 519 (791)
+|.... ....+|..+. ..+||||||+.| ...++..|+..|+.-. ...
T Consensus 68 ~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 68 SELFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HHHhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceecc
Confidence 111100 0111233332 459999999988 3566777777776421 023
Q ss_pred cEEEeccCCchh-------hhhhhhcCCCCcc-ccccCCCCC--HHHHHHHHHHHHhc----C--C--CCCCHHHHHHHH
Q 003859 520 QVVLIGATNRVD-------AIDGALRRPGRFD-REFNFPLPG--CEARAEILDIHTRK----W--K--QPPSRELKSELA 581 (791)
Q Consensus 520 ~vivIattn~~~-------~Ld~aL~r~gRf~-~~I~~~~Pd--~eer~~IL~~~l~~----~--~--~~~~~~~~~~LA 581 (791)
.+.||++|+..- .+.+.|.. ||. ..|.+|+.. .++...|+++++.. + . ..++.+.+..|.
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLL 211 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 567888886531 23344544 553 345555543 24455555554432 1 2 346777777777
Q ss_pred HHccCCCHHHHHHHHHHHHHHH
Q 003859 582 ASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 582 ~~t~G~s~~di~~l~~~A~~~a 603 (791)
...=--+.++|.+++.+|+..+
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHhC
Confidence 6654456788888888777644
No 201
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.96 E-value=2.5e-08 Score=117.44 Aligned_cols=52 Identities=31% Similarity=0.471 Sum_probs=44.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (791)
|..-|++++|+++++..|..++.. ..+++|+||||||||++|+++|..+...
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 567889999999999998887654 2489999999999999999999998654
No 202
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.96 E-value=2.7e-08 Score=102.51 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=80.4
Q ss_pred CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc-------------hhhhhhhhcCCCCcc
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-------------VDAIDGALRRPGRFD 544 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~-------------~~~Ld~aL~r~gRf~ 544 (791)
|.||||||+|.|- -..+..|...++. +-.+ +||.++|+ |.-+++.|+. |+
T Consensus 297 PGVLFIDEVhMLD-----------iEcFTyL~kalES--~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl- 359 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-----------IECFTYLHKALES--PIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL- 359 (456)
T ss_pred CcceEeeehhhhh-----------hHHHHHHHHHhcC--CCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-
Confidence 8899999998772 3344455555552 2233 44445553 4457788887 76
Q ss_pred ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 545 REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 545 ~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
.+|..-+++.++.++|++...+-..+..+.+.+..|+.....-|.+...+|+.-|...|-..
T Consensus 360 ~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~ 421 (456)
T KOG1942|consen 360 LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN 421 (456)
T ss_pred eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc
Confidence 36777788999999999999998889999998888888777667777777777666655543
No 203
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.93 E-value=4.2e-09 Score=123.29 Aligned_cols=200 Identities=24% Similarity=0.221 Sum_probs=124.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
...+|+.|+|.......+.+.+... ......|||+|++|||||++|++|....... ..+|+.++|..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~ 257 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAA 257 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCC
Confidence 4568899999999999988877652 1345679999999999999999999876432 45788888876
Q ss_pred hhhhhH-----hHHHHH-------HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--C--
Q 003859 454 VLSKWV-----GEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S-- 517 (791)
Q Consensus 454 ~~~~~~-----g~~~~~-------l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~-- 517 (791)
+..... |..... ...+|..+ ...+||||||+.|- ..++..|+..++.-. .
T Consensus 258 ~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 258 LSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred CCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECC
Confidence 533211 100000 00112222 24599999999883 456677777776421 0
Q ss_pred -----CCcEEEeccCCch-h-hh-----hhhhcCCCCc-cccccCCCCC--HHHHHHHHHHHHhcC------CCCCCHHH
Q 003859 518 -----RGQVVLIGATNRV-D-AI-----DGALRRPGRF-DREFNFPLPG--CEARAEILDIHTRKW------KQPPSREL 576 (791)
Q Consensus 518 -----~~~vivIattn~~-~-~L-----d~aL~r~gRf-~~~I~~~~Pd--~eer~~IL~~~l~~~------~~~~~~~~ 576 (791)
...+.||++|+.. . .+ .+.|.. |+ ...|.+|+.. .++...|+.+++..+ ...++.+.
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1146777777652 1 11 122222 33 2245555543 345556666665432 24567777
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 577 KSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 577 ~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
+..|....=.-+.++|.+++.+|+..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 77777665445778899999887754
No 204
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.93 E-value=8e-08 Score=101.76 Aligned_cols=186 Identities=20% Similarity=0.237 Sum_probs=110.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc----CCceEEEEEech------hhhhhhH----------hHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRKGA------DVLSKWV----------GEAERQLKLLFE 471 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i~~~------~~~~~~~----------g~~~~~l~~lf~ 471 (791)
...++||+|++|.|||++++.++...... ...++++.+... .|..... .........+..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 34579999999999999999998765322 123445544431 1111110 012222333445
Q ss_pred HHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcE--EEeccCCchhh--hhhhhcCCCCccccc
Q 003859 472 EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV--VLIGATNRVDA--IDGALRRPGRFDREF 547 (791)
Q Consensus 472 ~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~v--ivIattn~~~~--Ld~aL~r~gRf~~~I 547 (791)
..+...+-+|+|||||.++.. ...-+..+++.|..+...-.+ +.++|..-... -|+.|.+ ||. .+
T Consensus 140 llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~ 208 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE-PF 208 (302)
T ss_pred HHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-Cc
Confidence 556667779999999997632 122244455555554444444 44443322222 3677777 996 46
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 548 NFPLPGC-EARAEILDIHTRKWKQP-----PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 548 ~~~~Pd~-eer~~IL~~~l~~~~~~-----~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
.+|.... ++...+|..+-..+++. .+..+...|-..+.|.+ ++|..|+..|+..|++...+
T Consensus 209 ~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 209 ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCc
Confidence 6665432 34556776666554332 23455567777788754 68999999999999986543
No 205
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=3.2e-09 Score=105.28 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=76.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHH----HHhcCCeEEEEeCCC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEE----AQRNQPSIIFFDEID 487 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~----a~~~~p~VL~IDEiD 487 (791)
|..++||+||+|||||.+|++||..+.. +...+++.++++.+... ......+..++.. .......||||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 3457999999999999999999999952 12348888888777651 0111111111111 011111299999999
Q ss_pred ccCCCCCCchhhhhHHHHHHHHHHHhccC---------CCCcEEEeccCCchhh
Q 003859 488 GLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVDA 532 (791)
Q Consensus 488 ~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---------~~~~vivIattn~~~~ 532 (791)
.+.+..+.........+++.||.+|++-. ...+++||+|+|.-..
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99875333334445688999999997521 1357899999987543
No 206
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=7e-09 Score=120.30 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=99.0
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE---echhhhh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR---KGADVLS 456 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i---~~~~~~~ 456 (791)
.|.|++.+|..|.-.+..-. .+..-....+....+|||+|+||||||++|+++++.+.. ..|+.. ++..+..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r----~~~~~~~~~~~~~l~~ 278 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR----AVYTTGKGSSAVGLTA 278 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc----ceEcCCCCCCcCCccc
Confidence 57888888777755543310 011111112233458999999999999999999987642 223321 1111111
Q ss_pred hhHhH---HHHHH-HHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----------CCCcE
Q 003859 457 KWVGE---AERQL-KLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQV 521 (791)
Q Consensus 457 ~~~g~---~~~~l-~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----------~~~~v 521 (791)
..... ....+ ...+..| ...+|+|||++.+- ...+..|+..|+.-. -...+
T Consensus 279 ~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 279 AVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred cceEccCcceEEecCccEEec---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 00000 00000 0011111 23499999999873 456667777775421 12467
Q ss_pred EEeccCCchh-------------hhhhhhcCCCCccccc-cCCCCCHHHHHHHHHHHH
Q 003859 522 VLIGATNRVD-------------AIDGALRRPGRFDREF-NFPLPGCEARAEILDIHT 565 (791)
Q Consensus 522 ivIattn~~~-------------~Ld~aL~r~gRf~~~I-~~~~Pd~eer~~IL~~~l 565 (791)
.||||+|... .|++++++ ||+..+ .+..|+.+....|+++.+
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 8999999753 58999999 998754 457899999989888754
No 207
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.92 E-value=6.5e-09 Score=113.92 Aligned_cols=197 Identities=20% Similarity=0.160 Sum_probs=119.8
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~ 457 (791)
+++|+|.......+.+.+... ......|||+|++||||+++|++|...... ...+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALNEN 71 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCCHH
Confidence 567899999888888877652 134567999999999999999999865432 2467888888765321
Q ss_pred -----hHhHHHH-------HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--C------
Q 003859 458 -----WVGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S------ 517 (791)
Q Consensus 458 -----~~g~~~~-------~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~------ 517 (791)
++|.... .....|..+ ...+|||||++.|. ..++..|+..++.-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 1121100 001223333 23589999999883 456677777776421 1
Q ss_pred -CCcEEEeccCCch-h------hhhhhhcCCCCcc-ccccCCCCCH--HHHHHHHHHHHhc----CC----CCCCHHHHH
Q 003859 518 -RGQVVLIGATNRV-D------AIDGALRRPGRFD-REFNFPLPGC--EARAEILDIHTRK----WK----QPPSRELKS 578 (791)
Q Consensus 518 -~~~vivIattn~~-~------~Ld~aL~r~gRf~-~~I~~~~Pd~--eer~~IL~~~l~~----~~----~~~~~~~~~ 578 (791)
...+.||++|+.. . .+.+.|.. ||. ..|.+|+... ++...|+.+++.. +. ..++.+.+.
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 1246777777652 1 23345554 562 3444544422 3444555555432 22 245677766
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 579 ELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 579 ~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|....=--+.++|++++.+|+..+
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 6666554456788889888876543
No 208
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=5.9e-09 Score=107.75 Aligned_cols=188 Identities=23% Similarity=0.290 Sum_probs=102.3
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE-ech--hhhhh
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR-KGA--DVLSK 457 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i-~~~--~~~~~ 457 (791)
++|++..++.|.+++.. .+...++|+||.|+|||+|++.+...+......+.|+.. ... .....
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 36888888888886644 345689999999999999999999987432221211111 000 00000
Q ss_pred h-------------H-----------------hHHHHHHHHHHHHHHhcC-CeEEEEeCCCccC-CCCCCchhhhhHHHH
Q 003859 458 W-------------V-----------------GEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLA-PVRSSKQEQIHNSIV 505 (791)
Q Consensus 458 ~-------------~-----------------g~~~~~l~~lf~~a~~~~-p~VL~IDEiD~L~-~~~~~~~~~~~~~v~ 505 (791)
. . ......+..++..+.... ..||+|||++.+. ... ....++
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHH
Confidence 0 0 112334555555555433 4899999999987 211 134566
Q ss_pred HHHHHHHhccCCCCcEEEeccCCchhhhh------hhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCC--CHHHH
Q 003859 506 STLLALMDGLDSRGQVVLIGATNRVDAID------GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPP--SRELK 577 (791)
Q Consensus 506 ~~Ll~~l~~~~~~~~vivIattn~~~~Ld------~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~--~~~~~ 577 (791)
..|...++......++.+|.++....... ..+.. |+.. +.+++.+.++..+++...+... ... +...+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~ 217 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHH
Confidence 66777776544455554444443322221 22333 7766 9999999999999999988776 433 77777
Q ss_pred HHHHHHccCCCHHHH
Q 003859 578 SELAASCVGYCGADL 592 (791)
Q Consensus 578 ~~LA~~t~G~s~~di 592 (791)
+.+...+.|. |..|
T Consensus 218 ~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 218 EEIYSLTGGN-PRYL 231 (234)
T ss_dssp HHHHHHHTT--HHHH
T ss_pred HHHHHHhCCC-HHHH
Confidence 8888888775 4443
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.1e-08 Score=107.59 Aligned_cols=135 Identities=15% Similarity=0.199 Sum_probs=96.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC-------------------CceEEEEEechhhhhhhHhHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-------------------QKVSFYMRKGADVLSKWVGEAERQLKLLFE 471 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~ 471 (791)
..+..+||+||+|+||+++|+++|+.+-... .+-.++.+.... ++. -....++.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 4466899999999999999999999884321 111122222110 000 12234454444
Q ss_pred HHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccc
Q 003859 472 EAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (791)
Q Consensus 472 ~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I 547 (791)
.+. ....-|++||++|.| .....+.||+.|+ .+...+++|.+|+.++.|.+.+++ |+. .+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~-~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ-TW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce-EE
Confidence 433 233469999999988 4567888999999 467788899999999999999999 985 68
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 003859 548 NFPLPGCEARAEILDIHT 565 (791)
Q Consensus 548 ~~~~Pd~eer~~IL~~~l 565 (791)
.|++|+.++..+.|....
T Consensus 162 ~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999888887653
No 210
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.6e-08 Score=109.25 Aligned_cols=186 Identities=24% Similarity=0.328 Sum_probs=122.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh-hhHhH-HHHHHHHHHHHHH----hcCCeEEEEeCCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-KWVGE-AERQLKLLFEEAQ----RNQPSIIFFDEID 487 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~-~~~g~-~~~~l~~lf~~a~----~~~p~VL~IDEiD 487 (791)
.+|||.||+|+|||+||+.||+.+ +|+|..++|..+-. .|+|+ .+..|..++..|. ..+..||||||+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvD 301 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVD 301 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhh
Confidence 579999999999999999999998 69999999887653 57775 4455666666543 3345699999999
Q ss_pred ccCCCC-CCch--hhhhHHHHHHHHHHHhccC-----------CC--------CcEEEeccCCch--h------------
Q 003859 488 GLAPVR-SSKQ--EQIHNSIVSTLLALMDGLD-----------SR--------GQVVLIGATNRV--D------------ 531 (791)
Q Consensus 488 ~L~~~~-~~~~--~~~~~~v~~~Ll~~l~~~~-----------~~--------~~vivIattn~~--~------------ 531 (791)
.|.... +-.. .-...-++..||.++++.. .+ .+|++|+..-.. +
T Consensus 302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~sl 381 (564)
T KOG0745|consen 302 KITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSL 381 (564)
T ss_pred hhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhc
Confidence 998432 1111 1123467888999988621 11 234444432100 0
Q ss_pred -----------------------------h-------------hhhhhcCCCCccccccCCCCCHHHHHHHHHH------
Q 003859 532 -----------------------------A-------------IDGALRRPGRFDREFNFPLPGCEARAEILDI------ 563 (791)
Q Consensus 532 -----------------------------~-------------Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~------ 563 (791)
. |-|.|.. ||..++.|...+..+...||..
T Consensus 382 GFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVG--RfPVlVplh~L~~~~Lv~VLtEPknaL~ 459 (564)
T KOG0745|consen 382 GFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVG--RFPVLVPLHSLDEDQLVRVLTEPKNALG 459 (564)
T ss_pred ccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhc--ccceEeeccccCHHHHHHHHhcchhhHH
Confidence 0 1244444 9998899999999998888751
Q ss_pred -----HHh--cCCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHh
Q 003859 564 -----HTR--KWKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 564 -----~l~--~~~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~~~ 606 (791)
++. +..+..+...+..+|+.+ .+--.+-|+.++..+.+.+...
T Consensus 460 ~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 460 KQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 221 124456777777777653 3334567888888777766553
No 211
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.91 E-value=3.1e-08 Score=101.67 Aligned_cols=185 Identities=22% Similarity=0.220 Sum_probs=132.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (791)
.+.+|+.+.+.++....|+..... ..-.++|+|||+|+||-|.+-+|.+++...+.
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 456778899999988888776532 12247999999999999999999999864321
Q ss_pred -----ceEE--------EEEechhhhhhhHhHH-HHHHHHHHHHHHhcC---------CeEEEEeCCCccCCCCCCchhh
Q 003859 443 -----KVSF--------YMRKGADVLSKWVGEA-ERQLKLLFEEAQRNQ---------PSIIFFDEIDGLAPVRSSKQEQ 499 (791)
Q Consensus 443 -----~~~~--------~~i~~~~~~~~~~g~~-~~~l~~lf~~a~~~~---------p~VL~IDEiD~L~~~~~~~~~~ 499 (791)
++.+ ++++.++. |.. .-.++.++......+ -.||+|-|+|.|
T Consensus 75 tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L---------- 139 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---------- 139 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----------
Confidence 1111 11222221 111 123344444443322 248999999988
Q ss_pred hhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003859 500 IHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSE 579 (791)
Q Consensus 500 ~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~ 579 (791)
....+..|-..|+.+.. .+-+|.++|....+-+++++ |+ ..|.+|.|+.++...+|...+.+.++.+..+++..
T Consensus 140 -T~dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~r 213 (351)
T KOG2035|consen 140 -TRDAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKR 213 (351)
T ss_pred -hHHHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 46677788888886644 56677778888889999998 87 46899999999999999999999999999999999
Q ss_pred HHHHccCCCHHHH
Q 003859 580 LAASCVGYCGADL 592 (791)
Q Consensus 580 LA~~t~G~s~~di 592 (791)
+|..+.|-....|
T Consensus 214 Ia~kS~~nLRrAl 226 (351)
T KOG2035|consen 214 IAEKSNRNLRRAL 226 (351)
T ss_pred HHHHhcccHHHHH
Confidence 9999887544433
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.8e-08 Score=108.90 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc-------------------CCceEEEEEechhh-hhhhHhHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-------------------GQKVSFYMRKGADV-LSKWVGEAERQLKLLF 470 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-------------------~~~~~~~~i~~~~~-~~~~~g~~~~~l~~lf 470 (791)
+.+..+||+||+|+||+++|.++|+.+-.. +.+-.++.+....- ..-.+.+.......+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 456789999999999999999999998432 11111222211100 0011222222222222
Q ss_pred HHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCC
Q 003859 471 EEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (791)
Q Consensus 471 ~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~ 550 (791)
........-|+|||++|.| .....+.||+.|+ .+..++++|.+|+.++.|.+.+++ |+. .+.|+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~ 165 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHYLA 165 (334)
T ss_pred hccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cccCC
Confidence 2333344569999999988 4667888999999 467788999999999999999999 997 68999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHH
Q 003859 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (791)
Q Consensus 551 ~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~d 591 (791)
+|+.++..+.|.... + .+......++..+.|-.+..
T Consensus 166 ~~~~~~~~~~L~~~~---~--~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 166 PPPEQYALTWLSREV---T--MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCHHHHHHHHHHcc---C--CCHHHHHHHHHHcCCCHHHH
Confidence 999988887775431 2 33343445566666644333
No 213
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=2.7e-09 Score=101.92 Aligned_cols=110 Identities=28% Similarity=0.396 Sum_probs=67.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh--hhhHhHHHHH------HHHHHHHHHhcCCeEEEEeCC
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL--SKWVGEAERQ------LKLLFEEAQRNQPSIIFFDEI 486 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~--~~~~g~~~~~------l~~lf~~a~~~~p~VL~IDEi 486 (791)
+|||+||||||||+||+.+|+.++ ..++.+.+.... ..+.|...-. ....+..+. ..++|||||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCc
Confidence 589999999999999999999993 344444443221 1111110000 000000000 14679999999
Q ss_pred CccCCCCCCchhhhhHHHHHHHHHHHhccC-----------CCC------cEEEeccCCchh----hhhhhhcCCCCc
Q 003859 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRG------QVVLIGATNRVD----AIDGALRRPGRF 543 (791)
Q Consensus 487 D~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----------~~~------~vivIattn~~~----~Ld~aL~r~gRf 543 (791)
+.. ...++..|+.+++.-. ... .+.||+|+|... .++++|++ ||
T Consensus 75 n~a-----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRA-----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG-------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccC-----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 755 4667777888776421 111 389999999988 79999998 87
No 214
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.5e-08 Score=104.15 Aligned_cols=220 Identities=20% Similarity=0.286 Sum_probs=133.0
Q ss_pred CCCc-cCCcHHHHHHHHHHHHcccCChhHhhhcC---C-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASYH---I-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 377 ~~~~-l~G~e~~k~~L~~~v~~pl~~~~~~~~~g---~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
-+++ |+|++..|..|.=++... |..+..... + -...+|||.||+|||||+||+.||+.+ +++|...++
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiADA 130 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIADA 130 (408)
T ss_pred HhhhheecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-----CCCeeeccc
Confidence 3555 899999998875544331 222211100 0 124689999999999999999999999 589888887
Q ss_pred hhhhh-hhHhHHHH-HHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCC-----
Q 003859 452 ADVLS-KWVGEAER-QLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDS----- 517 (791)
Q Consensus 452 ~~~~~-~~~g~~~~-~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~----- 517 (791)
..+-. .|+|+-.. .+..++..|. .....||+|||||.++.+..+.+ .-...-++..||.++++...
T Consensus 131 TtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPq 210 (408)
T COG1219 131 TTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210 (408)
T ss_pred cchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCC
Confidence 76653 57776443 4455555432 23355999999999986543211 12335688899999987321
Q ss_pred --------------CCcEEEeccCC----------------------c-----------------hhh-----hhhhhcC
Q 003859 518 --------------RGQVVLIGATN----------------------R-----------------VDA-----IDGALRR 539 (791)
Q Consensus 518 --------------~~~vivIattn----------------------~-----------------~~~-----Ld~aL~r 539 (791)
+.++++|+..- . |+. |-|.|..
T Consensus 211 GGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIG 290 (408)
T COG1219 211 GGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIG 290 (408)
T ss_pred CCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhc
Confidence 12334333210 0 000 1244443
Q ss_pred CCCccccccCCCCCHHHHHHHHHH----HHh---------cCCCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHH
Q 003859 540 PGRFDREFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAF 604 (791)
Q Consensus 540 ~gRf~~~I~~~~Pd~eer~~IL~~----~l~---------~~~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~ 604 (791)
|+..+..+...+.++...||.. +.+ +..+....+.+..+|..+ .+--.+-|+.++...+.-.+
T Consensus 291 --RlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~M 368 (408)
T COG1219 291 --RLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVM 368 (408)
T ss_pred --ccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 8887888888899988888751 111 223445666677777543 23334566666666555444
Q ss_pred H
Q 003859 605 R 605 (791)
Q Consensus 605 ~ 605 (791)
.
T Consensus 369 f 369 (408)
T COG1219 369 F 369 (408)
T ss_pred h
Confidence 4
No 215
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.89 E-value=1.5e-09 Score=135.02 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=51.4
Q ss_pred CCCCCCcEEEecCCCCChhHHHHHHHHHH----cCchhHHHHH-------------------------------------
Q 003859 699 PLVYRPRLLLCGSEGTGVFNRIILGLQFY----MNWRNFLFIL------------------------------------- 737 (791)
Q Consensus 699 ~l~~~~g~Ll~GPPGtGKT~la~~~~~~~----~~~~~~~l~~------------------------------------- 737 (791)
+++++.|+||+||||||||.||+++|+.. +.+.+..+..
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 45666699999999999998888888742 2222222210
Q ss_pred -----HHH---H--HHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 738 -----LVF---Q--LFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 738 -----d~~---e--~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
+|. . .++.+|..|++.+||||||||||+++..
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ 1747 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN 1747 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC
Confidence 011 1 2566899999999999999999999975
No 216
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=1.5e-08 Score=111.59 Aligned_cols=205 Identities=25% Similarity=0.221 Sum_probs=128.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
....+++|+|.....+.+.+.+... .+...+|||+|++||||+++|++|.....+. ...+|+.+||+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~-~~~PFI~~NCa~ 140 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARR-AEAPFIAFNCAA 140 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc-cCCCEEEEEHHH
Confidence 4567889999999888888877551 1345679999999999999999999555443 578999999987
Q ss_pred hhhhh-----HhHH-------HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-----C
Q 003859 454 VLSKW-----VGEA-------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----D 516 (791)
Q Consensus 454 ~~~~~-----~g~~-------~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-----~ 516 (791)
+.... +|.. ...-..+|+.|..+ +||||||+.|- ...+..|+..|+.. .
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP-----------~~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLP-----------PEGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred hCcCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCC-----------HhHHHHHHHHHHcCceEecC
Confidence 65432 2211 11223455555444 99999999884 44566788888752 1
Q ss_pred ----CCCcEEEeccCCc--hhhhhh--hhcCCCCccccccCCCCCH--HHHHHHHHHHHhc----CCCCC---CHHHHHH
Q 003859 517 ----SRGQVVLIGATNR--VDAIDG--ALRRPGRFDREFNFPLPGC--EARAEILDIHTRK----WKQPP---SRELKSE 579 (791)
Q Consensus 517 ----~~~~vivIattn~--~~~Ld~--aL~r~gRf~~~I~~~~Pd~--eer~~IL~~~l~~----~~~~~---~~~~~~~ 579 (791)
....|.+|+||+. .+.+-. .|.+. ++...|.+|+.-. .++..++++++.. .+... ....+..
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 1235777777764 233333 33320 4444555554432 3444555555543 33322 2234444
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHHHH
Q 003859 580 LAASCVGYCGADLKALCTEAAIRAFR 605 (791)
Q Consensus 580 LA~~t~G~s~~di~~l~~~A~~~a~~ 605 (791)
|....---+-++|++++..++..+..
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 44443334679999999999887754
No 217
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.88 E-value=8.1e-09 Score=108.14 Aligned_cols=190 Identities=18% Similarity=0.154 Sum_probs=126.7
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEe
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRK 450 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~ 450 (791)
...+..+++|++.+++...+.++... ..-.++|+|||||||||+...+.|..+... ....-+..++
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 44567888999999999999887433 222389999999999999999999998642 1110011111
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHh-------cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEE
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQR-------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVL 523 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~-------~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~viv 523 (791)
.++-.+. ...+.--..|..++. ..+.+++|||+|++ ....+++|-..+..+..+ +.+
T Consensus 101 aSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~n--~rF 164 (360)
T KOG0990|consen 101 ASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTAN--TRF 164 (360)
T ss_pred ccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhccc--eEE
Confidence 1111100 011122233444432 24669999999987 455666677777765444 444
Q ss_pred eccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 524 Iattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
+..+|.+..+.+++++ ||. .+.|.+.+..+....+.+++..-....+.+....++....| |+..+++
T Consensus 165 ~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n 231 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALN 231 (360)
T ss_pred EEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHH
Confidence 4668999999999998 996 58888899999999999999887777777766555554444 4444444
No 218
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.88 E-value=6.8e-09 Score=102.12 Aligned_cols=139 Identities=24% Similarity=0.306 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------------Cce
Q 003859 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------------QKV 444 (791)
Q Consensus 383 G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------------~~~ 444 (791)
|++.+++.|...+.. -..+..+||+||+|+||+++|.++|+.+-... .+.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788889999888765 15567799999999999999999999884322 122
Q ss_pred EEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc
Q 003859 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (791)
Q Consensus 445 ~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~ 520 (791)
.++.+........ -....++.+...+. ....-|++||++|.| .....+.||..|+ .....
T Consensus 69 d~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE--epp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKKS---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE--EPPEN 132 (162)
T ss_dssp TEEEEETTTSSSS---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH--STTTT
T ss_pred ceEEEecccccch---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc--CCCCC
Confidence 2333332211000 01233444444432 233569999999988 5678889999999 45678
Q ss_pred EEEeccCCchhhhhhhhcCCCCccccccCCCC
Q 003859 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (791)
Q Consensus 521 vivIattn~~~~Ld~aL~r~gRf~~~I~~~~P 552 (791)
+++|.+|+.+..|.+.+++ |+. .|.|++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred EEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 8999999999999999999 884 5666543
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=4.6e-08 Score=106.11 Aligned_cols=174 Identities=18% Similarity=0.204 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC----------------CceEEEE
Q 003859 385 SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG----------------QKVSFYM 448 (791)
Q Consensus 385 e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~----------------~~~~~~~ 448 (791)
..+.+.|...+.. -..+..+||+||+|+||+++|.++|+.+-... .+-.++.
T Consensus 10 ~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 4556666665543 14566799999999999999999998874321 0111222
Q ss_pred E--echhhhhh-hHhHHHHHHHHHHHHHHhc----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcE
Q 003859 449 R--KGADVLSK-WVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV 521 (791)
Q Consensus 449 i--~~~~~~~~-~~g~~~~~l~~lf~~a~~~----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~v 521 (791)
+ ....-..+ ...-....++.+...+... ..-|+|||++|.| .....+.||+.|+. +..++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~~ 144 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE--PSPGR 144 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC--CCCCC
Confidence 2 11000000 0001233455555544332 2359999999988 45677889999994 55677
Q ss_pred EEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH
Q 003859 522 VLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (791)
Q Consensus 522 ivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di 592 (791)
++|.+|+.++.|.+.|++ |+. .|.|+.|+.++..+.|... . .+......++..+.|-.+..+
T Consensus 145 ~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 145 YLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLAA 206 (319)
T ss_pred eEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHHH
Confidence 888888999999999999 995 6889999998888777642 1 233333455666666444333
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-08 Score=108.92 Aligned_cols=145 Identities=26% Similarity=0.423 Sum_probs=105.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
.+-.++||+||||+|||+||-.+|... .++|+-+-.. +..+......-..+..+|+.|++..-+||++|+|+.|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh
Confidence 445689999999999999999999876 4777765444 3433333345568899999999998899999999998
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhccCCCC-cEEEeccCCchhhhh-hhhcCCCCccccccCCCCCH-HHHHHHHHH
Q 003859 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRG-QVVLIGATNRVDAID-GALRRPGRFDREFNFPLPGC-EARAEILDI 563 (791)
Q Consensus 490 ~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~-~vivIattn~~~~Ld-~aL~r~gRf~~~I~~~~Pd~-eer~~IL~~ 563 (791)
+.-- .-+..+++.++..|+-++....+.+ +++|++||...+.|. -.+.. .|+..|++|..+. ++..++|+.
T Consensus 611 iD~v-pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 611 LDYV-PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred hccc-ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 7421 2234567888889998888766654 566677776655443 23444 8888999988765 666666654
No 221
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.8e-08 Score=105.88 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=63.6
Q ss_pred eEEEEeCCCccCCCCCCchhh-hhHHHHHHHHHHHhccC--------CCCcEEEeccC----CchhhhhhhhcCCCCccc
Q 003859 479 SIIFFDEIDGLAPVRSSKQEQ-IHNSIVSTLLALMDGLD--------SRGQVVLIGAT----NRVDAIDGALRRPGRFDR 545 (791)
Q Consensus 479 ~VL~IDEiD~L~~~~~~~~~~-~~~~v~~~Ll~~l~~~~--------~~~~vivIatt----n~~~~Ld~aL~r~gRf~~ 545 (791)
.||||||||.++.....+... ...-++..||-++++.. .++++++||+. ..|..|-|.|.. ||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 499999999999776533323 33457778888887632 34678999886 457888888876 9999
Q ss_pred cccCCCCCHHHHHHHHH
Q 003859 546 EFNFPLPGCEARAEILD 562 (791)
Q Consensus 546 ~I~~~~Pd~eer~~IL~ 562 (791)
.|++...+.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999998875
No 222
>PRK08116 hypothetical protein; Validated
Probab=98.85 E-value=4.2e-08 Score=104.45 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=73.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH----HHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA----ERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~----~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
+.++||+|++|||||+||.+||+.+...+. .++.++...++..+.... ......++.... ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~--~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGV--PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 457999999999999999999999976654 445556666655432221 111222333322 345999999964
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc-hhhh----hhhhcCCCCc---cccccCCCCCH
Q 003859 489 LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDAI----DGALRRPGRF---DREFNFPLPGC 554 (791)
Q Consensus 489 L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~-~~~L----d~aL~r~gRf---~~~I~~~~Pd~ 554 (791)
... ....+..|+.+++.....+. .+|.|||. +..| +..+.+ |+ ...|.|.-++.
T Consensus 190 e~~---------t~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 190 ERD---------TEWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred CCC---------CHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 321 23344556666665433333 34555555 4443 455555 53 33455655554
No 223
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.83 E-value=4.5e-08 Score=115.15 Aligned_cols=189 Identities=20% Similarity=0.214 Sum_probs=114.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHH--HHHH--------HHHHHHHhcCCeEEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE--RQLK--------LLFEEAQRNQPSIIFF 483 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~--~~l~--------~lf~~a~~~~p~VL~I 483 (791)
.+|||.|+||||||++|++|+..+... .+|+.+.........+|... ..+. .++.. ....||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~l 90 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYV 90 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEec
Confidence 479999999999999999999977432 24554443222222222210 0000 01111 12249999
Q ss_pred eCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----------CCCcEEEeccCCchh---hhhhhhcCCCCccccccC
Q 003859 484 DEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD---AIDGALRRPGRFDREFNF 549 (791)
Q Consensus 484 DEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----------~~~~vivIattn~~~---~Ld~aL~r~gRf~~~I~~ 549 (791)
|||+.+ ...++..|+..|+.-. ....+.||+|+|..+ .|+++|.. ||...|.+
T Consensus 91 DEi~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 91 DMANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred cchhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 999887 4567888888886421 124688999888765 68899998 99887766
Q ss_pred C-CCCHHHHHHHHHHHHhcC-----------------------CCCCCHHHHHHHHHHc--cCCC-HHHHHHHHHHHHHH
Q 003859 550 P-LPGCEARAEILDIHTRKW-----------------------KQPPSRELKSELAASC--VGYC-GADLKALCTEAAIR 602 (791)
Q Consensus 550 ~-~Pd~eer~~IL~~~l~~~-----------------------~~~~~~~~~~~LA~~t--~G~s-~~di~~l~~~A~~~ 602 (791)
. .|...+|.+|++.++..+ .+.++..++..|+..+ .|.+ .+....+++-|...
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 5 457778899888765221 1233444444444433 2222 34444555555555
Q ss_pred HHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 603 AFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 603 a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
|..+... .|+.+|+..|+.
T Consensus 238 Aal~gr~----------------~V~~~Dv~~a~~ 256 (589)
T TIGR02031 238 AALHGRT----------------EVTEEDLKLAVE 256 (589)
T ss_pred HHHhCCC----------------CCCHHHHHHHHH
Confidence 5554432 478888877754
No 224
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.83 E-value=1.7e-09 Score=108.81 Aligned_cols=47 Identities=43% Similarity=0.557 Sum_probs=36.7
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|.+|+|++.+|..|.-+..- ..++||+||||||||++|+.+...|.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999766533 35899999999999999999997763
No 225
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.82 E-value=2.7e-08 Score=114.22 Aligned_cols=214 Identities=21% Similarity=0.261 Sum_probs=124.5
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec----
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG---- 451 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~---- 451 (791)
..|.+|.|+..++..|.-.+ ....+++|+||||||||++++.++..+....... ++....
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~-~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE-AIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE-EEeccccccc
Confidence 47899999999877665432 3346899999999999999999997653221111 111100
Q ss_pred --------------------hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHH
Q 003859 452 --------------------ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (791)
Q Consensus 452 --------------------~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~ 511 (791)
.......+|......-..+..| ...||||||++.+ ...++..|+..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----------~~~~~~~L~~~ 318 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----------KRSVLDALREP 318 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----------CHHHHHHHHHH
Confidence 0000000111000001122333 2359999999876 45677778777
Q ss_pred HhccC-----------CCCcEEEeccCCch------h-----------------hhhhhhcCCCCccccccCCCCCHHHH
Q 003859 512 MDGLD-----------SRGQVVLIGATNRV------D-----------------AIDGALRRPGRFDREFNFPLPGCEAR 557 (791)
Q Consensus 512 l~~~~-----------~~~~vivIattn~~------~-----------------~Ld~aL~r~gRf~~~I~~~~Pd~eer 557 (791)
|+.-. ....+.+|+++|.. . .|...|+. ||+..+.++.++..+.
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 76421 12468899999863 1 37788888 9999999987754432
Q ss_pred -------------HHHHHH------HHhcC-----CC-----------CCCHHHHHHH--HHHccCCCHHHHHHHHHHHH
Q 003859 558 -------------AEILDI------HTRKW-----KQ-----------PPSRELKSEL--AASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 558 -------------~~IL~~------~l~~~-----~~-----------~~~~~~~~~L--A~~t~G~s~~di~~l~~~A~ 600 (791)
..+.+. .+.+. .. .++......| +....++|.+.+..+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 222221 11111 11 1122221111 11234578888888888888
Q ss_pred HHHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 601 IRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 601 ~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
..|-.... ..|+.+|+.+|+.
T Consensus 477 TiAdL~g~----------------~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKEE----------------KNISREHLAEAIE 497 (499)
T ss_pred HHHhhcCC----------------CCCCHHHHHHHHh
Confidence 87765543 2488889998874
No 226
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.81 E-value=6.7e-09 Score=97.61 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=50.2
Q ss_pred EEEecCCCCChhHHHHHHHHHHc----CchhHHHH----HHHHHHHHHHhhhhhcCC-ceEEEEeCchhhcccc
Q 003859 706 LLLCGSEGTGVFNRIILGLQFYM----NWRNFLFI----LLVFQLFFQILVPRHQRR-HWCIYLVKLEEQRHQY 770 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~~----~~~~~~l~----~d~~e~~~~~~~~a~~~~-P~ivfldeid~~a~~~ 770 (791)
+||+||||||||++++.++..+- ......+. .+..+.+..+|..+...+ ||||||||+|.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999988888887642 23333333 344577777888887777 9999999999999977
No 227
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.80 E-value=2.7e-08 Score=115.01 Aligned_cols=200 Identities=21% Similarity=0.246 Sum_probs=119.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
....|++|+|.......+.+.+... .....+|||+|++||||+++|++|.+.... ...+|+.++|..
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~ 273 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGA 273 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEecccc
Confidence 3467899999999999888877542 134567999999999999999999876532 346888999876
Q ss_pred hhhhh-----HhHHHH--------HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC----
Q 003859 454 VLSKW-----VGEAER--------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---- 516 (791)
Q Consensus 454 ~~~~~-----~g~~~~--------~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---- 516 (791)
+.... +|.... ....+|+.+. ...||||||+.| ...++..|+..|+.-.
T Consensus 274 l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 274 IAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRV 339 (526)
T ss_pred CChhHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEec
Confidence 53321 111000 1122344443 348999999987 4566777888776421
Q ss_pred -C----CCcEEEeccCCchh--hhh-----hhhcCCCCccccccCCCCCHH----HHHHHHHHHHhcC----CCCCCHHH
Q 003859 517 -S----RGQVVLIGATNRVD--AID-----GALRRPGRFDREFNFPLPGCE----ARAEILDIHTRKW----KQPPSREL 576 (791)
Q Consensus 517 -~----~~~vivIattn~~~--~Ld-----~aL~r~gRf~~~I~~~~Pd~e----er~~IL~~~l~~~----~~~~~~~~ 576 (791)
. ...+-||++|+..- .+. ..|.. |+. .+.+..|... +...++.+++..+ ...++.+.
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 416 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA 416 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1 11346777776531 122 22222 332 2334444443 4445555555442 33455555
Q ss_pred HHH-------HHHHccCCCHHHHHHHHHHHHHHH
Q 003859 577 KSE-------LAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 577 ~~~-------LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
+.. |....=--+-++|++++.+++..+
T Consensus 417 ~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 444 333332346788888888877643
No 228
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=3.9e-08 Score=107.54 Aligned_cols=138 Identities=19% Similarity=0.248 Sum_probs=96.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC--------------------ceEEEEEechhh----------------
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ--------------------KVSFYMRKGADV---------------- 454 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~--------------------~~~~~~i~~~~~---------------- 454 (791)
+.+.++||+||+|+||+++|+++|+.+..... +-.++.+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 56678999999999999999999998854321 111222211100
Q ss_pred --hhh----h-HhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEE
Q 003859 455 --LSK----W-VGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVL 523 (791)
Q Consensus 455 --~~~----~-~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~viv 523 (791)
.+. . ..-....++.+...+.. ...-|+|||++|.| .....+.||+.|+ .+..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 000 0 00112345555544332 23459999999988 4567788999999 56778899
Q ss_pred eccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHH
Q 003859 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (791)
Q Consensus 524 Iattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~ 564 (791)
|.+|+.++.|.+.+++ |+. .|.|++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHHc
Confidence 9999999999999999 994 7999999999998888764
No 229
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.79 E-value=4.4e-08 Score=117.23 Aligned_cols=198 Identities=21% Similarity=0.257 Sum_probs=119.5
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..+|++|+|.......+.+.+... ......|||+|++||||+++|++|.+..... ..+|+.++|..+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~ 387 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLY 387 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCC
Confidence 456889999998888887766542 1334569999999999999999998875432 367888888765
Q ss_pred hh-----hhHhHH----HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC---C----
Q 003859 455 LS-----KWVGEA----ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---R---- 518 (791)
Q Consensus 455 ~~-----~~~g~~----~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---~---- 518 (791)
.. .++|.. .......|+.| ...+||||||+.|- ..++..|+..|+.-.- .
T Consensus 388 ~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 388 PDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred ChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 32 122211 00000122222 24599999999883 5566777777763210 0
Q ss_pred --CcEEEeccCCchhhhhhhhcCCCCccc-------cccCCCCCHHHH----HHHHHHHHhcC------CCCCCHHHHHH
Q 003859 519 --GQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEAR----AEILDIHTRKW------KQPPSRELKSE 579 (791)
Q Consensus 519 --~~vivIattn~~~~Ld~aL~r~gRf~~-------~I~~~~Pd~eer----~~IL~~~l~~~------~~~~~~~~~~~ 579 (791)
-.+.||+||+..- .. +...+.|.. .+.+..|...+| ..++..++..+ ...++.+.+..
T Consensus 454 ~~~~~riI~~t~~~l--~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTADL--AM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCCH--HH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1467888887631 11 111223311 234445544444 44555554432 23467777777
Q ss_pred HHHHccCCCHHHHHHHHHHHHHH
Q 003859 580 LAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 580 LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
|....=.-+.++|.+++..|+..
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHh
Confidence 77665445678899988877653
No 230
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.79 E-value=3e-08 Score=115.34 Aligned_cols=199 Identities=21% Similarity=0.222 Sum_probs=117.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
...+|++++|.......+.+.+... . .....|||+|++||||+++|+++...... ...+|+.++|..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~ 265 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCAS 265 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEecccc
Confidence 5678999999999888777766431 1 23456999999999999999998765432 246788888876
Q ss_pred hhhhh-----HhHHH-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--C--
Q 003859 454 VLSKW-----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S-- 517 (791)
Q Consensus 454 ~~~~~-----~g~~~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~-- 517 (791)
+.... +|... .....+|+.+. ..+||||||+.|. ..++..|+..++.-. .
T Consensus 266 ~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 266 IPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred CCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCC
Confidence 54321 11110 00112344433 3489999999883 456667777776421 1
Q ss_pred -----CCcEEEeccCCch-hh------hhhhhcCCCCccccccCCCCCHHH----HHHHHHHHHh----cCC---CCCCH
Q 003859 518 -----RGQVVLIGATNRV-DA------IDGALRRPGRFDREFNFPLPGCEA----RAEILDIHTR----KWK---QPPSR 574 (791)
Q Consensus 518 -----~~~vivIattn~~-~~------Ld~aL~r~gRf~~~I~~~~Pd~ee----r~~IL~~~l~----~~~---~~~~~ 574 (791)
...+.||++|+.. .. +.+.|.. |+. .+.+..|...+ ...++.+++. ..+ ..++.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1246677777653 22 2233433 442 23444444433 3344444443 222 24566
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 575 ELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 575 ~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
+.+..|....=.-+.++|++++.+|+..
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 7666666553334678888888877654
No 231
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.78 E-value=3.9e-08 Score=114.30 Aligned_cols=198 Identities=24% Similarity=0.248 Sum_probs=123.2
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
.+.+|+|....+..+.+.+... ...+..|||+|++||||+++|++|....... ..+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~ 251 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE 251 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh
Confidence 5778999999999988877652 2345689999999999999999999876433 45788888876532
Q ss_pred hh-----HhHHHH-------HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--------
Q 003859 457 KW-----VGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (791)
Q Consensus 457 ~~-----~g~~~~-------~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------- 516 (791)
.. +|.... .....|..+. ..+||||||+.|. ..++..|+..++.-.
T Consensus 252 ~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 252 SLAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 21 111100 0011233332 3589999999884 556677777776321
Q ss_pred -CCCcEEEeccCCchh--h-----hhhhhcCCCCccccccCCCCCHHHH----HHHHHHHHhc----C---CCCCCHHHH
Q 003859 517 -SRGQVVLIGATNRVD--A-----IDGALRRPGRFDREFNFPLPGCEAR----AEILDIHTRK----W---KQPPSRELK 577 (791)
Q Consensus 517 -~~~~vivIattn~~~--~-----Ld~aL~r~gRf~~~I~~~~Pd~eer----~~IL~~~l~~----~---~~~~~~~~~ 577 (791)
....+-||++|+..- . +...|.. |+. .+.|..|...+| ..++++++.. + ...++.+.+
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 012567888887631 1 2222222 332 233445544443 3444444432 1 245677777
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHH
Q 003859 578 SELAASCVGYCGADLKALCTEAAIRAF 604 (791)
Q Consensus 578 ~~LA~~t~G~s~~di~~l~~~A~~~a~ 604 (791)
..|....=--+.++|++++.+|+..+.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 777766555578999999998887654
No 232
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.76 E-value=9.7e-09 Score=95.18 Aligned_cols=113 Identities=30% Similarity=0.312 Sum_probs=58.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE-EEechhhhhhhHhHHHHHHHHHHHHHH-hcCCeEEEEeCCCccCCC
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY-MRKGADVLSKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~-~i~~~~~~~~~~g~~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~ 492 (791)
+|||+|+||+|||++|+++|+.++....++.|. .+..+++.+..+-.... ..|.... .--..||++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999986443333331 01112222110000000 0000000 000249999999655
Q ss_pred CCCchhhhhHHHHHHHHHHHhcc---------CCCCcEEEeccCCchh-----hhhhhhcCCCCc
Q 003859 493 RSSKQEQIHNSIVSTLLALMDGL---------DSRGQVVLIGATNRVD-----AIDGALRRPGRF 543 (791)
Q Consensus 493 ~~~~~~~~~~~v~~~Ll~~l~~~---------~~~~~vivIattn~~~-----~Ld~aL~r~gRf 543 (791)
..++++.|+..|... .-...++||||.|..+ .|+.+++. ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 567888999988752 2235689999999866 58888888 87
No 233
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.76 E-value=6.8e-08 Score=116.43 Aligned_cols=198 Identities=25% Similarity=0.266 Sum_probs=120.7
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
..|++++|.......+.+.+... .....+|||+|++|||||++|++|....... ..+|+.++|..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~ 439 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP 439 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC
Confidence 57889999999999888777652 1344579999999999999999998876433 3567777776542
Q ss_pred h-----hhHhHHH-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-------
Q 003859 456 S-----KWVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (791)
Q Consensus 456 ~-----~~~g~~~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~------- 516 (791)
. ..+|... ......|..+ ...+||||||+.| ...++..|+..|+...
T Consensus 440 ~~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 440 AGLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCC
Confidence 2 1222110 0111233333 2459999999987 3556677777775421
Q ss_pred --CCCcEEEeccCCch--hhhhh-----hhcCCCCccccccCCCCCHHHHH----HHHHHHHhcC----C--C-CCCHHH
Q 003859 517 --SRGQVVLIGATNRV--DAIDG-----ALRRPGRFDREFNFPLPGCEARA----EILDIHTRKW----K--Q-PPSREL 576 (791)
Q Consensus 517 --~~~~vivIattn~~--~~Ld~-----aL~r~gRf~~~I~~~~Pd~eer~----~IL~~~l~~~----~--~-~~~~~~ 576 (791)
....+-||++|+.. ..+.. .|.. |+. .+.+..|...+|. .++++++..+ + . .++.+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 01356788887663 12221 1221 221 2344555554443 3455544332 2 1 356777
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 577 KSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 577 ~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
+..|....=--+.++|++++.+|+..+
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 777766554457889999999887643
No 234
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=2.7e-08 Score=111.38 Aligned_cols=198 Identities=23% Similarity=0.259 Sum_probs=128.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
...+|++|+|.......+.+.+... .....+|||+|.+||||..+|++|.+...+. +-+|+.+||+.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~--~~PFIaiNCaA 306 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRA--NGPFIAINCAA 306 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCccc--CCCeEEEeccc
Confidence 5789999999999988888876542 3566789999999999999999999877554 57899999976
Q ss_pred hhhh-----hHhHHHH----H----HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC----
Q 003859 454 VLSK-----WVGEAER----Q----LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---- 516 (791)
Q Consensus 454 ~~~~-----~~g~~~~----~----l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---- 516 (791)
+-.. .+|.... . -..+|+.|..+ .||||||-.| .-.++..||..|+.-.
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEec
Confidence 5433 2222111 1 22355555444 8999999766 4567778888886421
Q ss_pred -C----CCcEEEeccCCchhhhhhhhcCCCCccc-------cccCCCCCHHH----HHHHHHHHHhc----CC---CCCC
Q 003859 517 -S----RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEA----RAEILDIHTRK----WK---QPPS 573 (791)
Q Consensus 517 -~----~~~vivIattn~~~~Ld~aL~r~gRf~~-------~I~~~~Pd~ee----r~~IL~~~l~~----~~---~~~~ 573 (791)
+ .-.|-||+|||. .|-.++. .|+|.. ++.+..|..-+ ...+..+++.+ ++ ..++
T Consensus 373 G~t~~~~vDVRIIAATN~--nL~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNR--NLEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCc--CHHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1 225789999997 2333332 244432 33444554433 33444444443 22 2356
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 003859 574 RELKSELAASCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 574 ~~~~~~LA~~t~G~s~~di~~l~~~A~~ 601 (791)
.+.+..|...-=--+-++|.+++.+|..
T Consensus 450 ~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 450 PDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 6666666554433467899999998875
No 235
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.75 E-value=4.3e-08 Score=113.29 Aligned_cols=200 Identities=21% Similarity=0.249 Sum_probs=118.8
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh------hcCCceEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS------KAGQKVSFYM 448 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~------~~~~~~~~~~ 448 (791)
...|++|+|.......+.+.+... ......|||+|++||||+++|++|...+. ......+|+.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 357899999999999988877542 13456799999999999999999988721 1223568999
Q ss_pred Eechhhhhhh-----HhHHHH--------HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc
Q 003859 449 RKGADVLSKW-----VGEAER--------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL 515 (791)
Q Consensus 449 i~~~~~~~~~-----~g~~~~--------~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~ 515 (791)
++|..+.... +|.... .-..+|+.|. ...||||||+.| ...++..|+..|+.-
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~ 349 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEK 349 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcC
Confidence 9987654321 121110 0112444443 348999999987 356677788877642
Q ss_pred C-----C----CCcEEEeccCCch-h-hhh-----hhhcCCCCccccccCCCCCHHH----HHHHHHHHHhc----CCCC
Q 003859 516 D-----S----RGQVVLIGATNRV-D-AID-----GALRRPGRFDREFNFPLPGCEA----RAEILDIHTRK----WKQP 571 (791)
Q Consensus 516 ~-----~----~~~vivIattn~~-~-~Ld-----~aL~r~gRf~~~I~~~~Pd~ee----r~~IL~~~l~~----~~~~ 571 (791)
. . .-.+-||++||.. . .+. ..|.- |+. .+.+..|...+ ...|+.+++.. ....
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~ 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAP 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC
Confidence 1 1 1235678777653 1 111 11211 221 34455555444 44555566554 3444
Q ss_pred CCHHHHH-------HHHHHccCCCHHHHHHHHHHHHHH
Q 003859 572 PSRELKS-------ELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 572 ~~~~~~~-------~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
++...+. .|....=--+.++|++++.+++..
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 5554432 222222223678899999888763
No 236
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.3e-07 Score=102.54 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------------------CceEE
Q 003859 385 SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------------QKVSF 446 (791)
Q Consensus 385 e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------------~~~~~ 446 (791)
....+.|...+.. -+.+..+||+||.|+||+++|+++|+.+-... .+-.|
T Consensus 9 ~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 9 VPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4556666665543 14567899999999999999999999874321 11223
Q ss_pred EEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEE
Q 003859 447 YMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV 522 (791)
Q Consensus 447 ~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vi 522 (791)
+.+....- ++.+ ....++.+...+. ....-|++|+++|.| .....+.||+.|+ .+..+++
T Consensus 77 ~~i~p~~~-~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~ 140 (319)
T PRK06090 77 HVIKPEKE-GKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE--EPAPNCL 140 (319)
T ss_pred EEEecCcC-CCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc--CCCCCeE
Confidence 33322100 0000 1223444433332 233469999999988 4567788999999 4667789
Q ss_pred EeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHH
Q 003859 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI 563 (791)
Q Consensus 523 vIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~ 563 (791)
+|.+|+.++.|.|.+++ |+. .+.|++|+.++..+.|..
T Consensus 141 fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 141 FLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 99999999999999999 995 789999999988887764
No 237
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.71 E-value=6.5e-08 Score=106.96 Aligned_cols=202 Identities=24% Similarity=0.248 Sum_probs=128.0
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
...+..|||......++.+.|... .....+|||+|.+||||..+|++|.+...+. .-+|+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~--~kPfV~~NCAAl 285 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRR--DKPFVKLNCAAL 285 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCccc--CCCceeeecccc
Confidence 567889999999999998888663 2455789999999999999999998877554 467888888765
Q ss_pred hhhhHh-HHHHHHHHHHHHHHhcC--------CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-----CCC--
Q 003859 455 LSKWVG-EAERQLKLLFEEAQRNQ--------PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----DSR-- 518 (791)
Q Consensus 455 ~~~~~g-~~~~~l~~lf~~a~~~~--------p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-----~~~-- 518 (791)
...... +.-...+..|.-|.... ...||||||-.| .-.++..||..|+.- -..
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 543211 11112223333332211 248999999766 345666677776632 111
Q ss_pred --CcEEEeccCCchhhhhhhhcCCCCccc-------cccCCCCCHHHH----HHHHHHHHhc----C---CCCCCHHHHH
Q 003859 519 --GQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEAR----AEILDIHTRK----W---KQPPSRELKS 578 (791)
Q Consensus 519 --~~vivIattn~~~~Ld~aL~r~gRf~~-------~I~~~~Pd~eer----~~IL~~~l~~----~---~~~~~~~~~~ 578 (791)
-.|-||++||+ .|..+++ .|+|.. ++.+..|..-+| --+..+++.+ + ...++.+.++
T Consensus 355 ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 14789999998 3444443 244432 222333433332 2222333322 2 3456777777
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 579 ELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 579 ~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|....---+.++|++++.+|+..|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 7776655557899999999999988
No 238
>PRK12377 putative replication protein; Provisional
Probab=98.71 E-value=1.7e-07 Score=98.23 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=75.0
Q ss_pred CCCCCCccC----CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 374 ESVSFDDIG----GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 374 ~~~~~~~l~----G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
...+|+++. |...++..+..++.. |. ....+++|+||||||||+||.+||+.+...+..+.|+
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~----~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-- 135 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADE-------LM----TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-- 135 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHH-------HH----hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE--
Confidence 345677753 333345555544433 21 1236899999999999999999999998777666554
Q ss_pred echhhhhhhHhHHH--HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 450 KGADVLSKWVGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 450 ~~~~~~~~~~g~~~--~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
...+++........ .....++... ....||+||||..... .......|+.+++.-.. ....+|.||
T Consensus 136 ~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~---------s~~~~~~l~~ii~~R~~-~~~ptiitS 203 (248)
T PRK12377 136 TVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE---------TKNEQVVLNQIIDRRTA-SMRSVGMLT 203 (248)
T ss_pred EHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC---------CHHHHHHHHHHHHHHHh-cCCCEEEEc
Confidence 44555554322111 0112233332 3456999999975532 12234455666664322 233445577
Q ss_pred Cc
Q 003859 528 NR 529 (791)
Q Consensus 528 n~ 529 (791)
|.
T Consensus 204 Nl 205 (248)
T PRK12377 204 NL 205 (248)
T ss_pred CC
Confidence 76
No 239
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.71 E-value=1.9e-08 Score=119.75 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=71.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc---
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM--- 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~--- 728 (791)
....|.++.|+...+.++.+.+.. +..+..+..++. ..++|+||+||||||||+++++++..+-
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~----~~~~~~~~~~~~---------~~~~gill~G~~G~GKt~~~~~~a~~~~~~f 213 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY----LREPSRFQKLGG---------KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 213 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH----hhCHHHHHhcCC---------CCCCcEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 346788999987666665554433 223344444322 3356999999999999987777766431
Q ss_pred -CchhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 729 -NWRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 729 -~~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
......+...+ ...++.+|..+...+||||||||||.++.+++..
T Consensus 214 ~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~ 263 (644)
T PRK10733 214 FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263 (644)
T ss_pred EEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC
Confidence 11222222111 2456677888888899999999999999887653
No 240
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.70 E-value=1.9e-08 Score=99.39 Aligned_cols=122 Identities=27% Similarity=0.377 Sum_probs=78.1
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh---
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--- 457 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~--- 457 (791)
|+|.......+.+.+... ...+..|||+|++||||+++|++|.....+ ...+|+.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~~~~~~e 67 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAALPEELLE 67 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS-HHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhhhcchhh
Confidence 467777777777766542 234578999999999999999999885432 3578999999766433
Q ss_pred --hHhHHH-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----C----CC
Q 003859 458 --WVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S----RG 519 (791)
Q Consensus 458 --~~g~~~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----~----~~ 519 (791)
.+|... .....+|..|... +||||||+.| ...++..|+..|+.-. . .-
T Consensus 68 ~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 68 SELFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhhhccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccc
Confidence 222110 0112456666554 9999999988 4567788888887421 1 12
Q ss_pred cEEEeccCCc
Q 003859 520 QVVLIGATNR 529 (791)
Q Consensus 520 ~vivIattn~ 529 (791)
.+.||++|+.
T Consensus 134 ~~RiI~st~~ 143 (168)
T PF00158_consen 134 DVRIIASTSK 143 (168)
T ss_dssp -EEEEEEESS
T ss_pred cceEEeecCc
Confidence 6788888875
No 241
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.70 E-value=3.3e-07 Score=105.60 Aligned_cols=207 Identities=14% Similarity=0.208 Sum_probs=122.2
Q ss_pred cccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 370 ~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
+....+.++++|+-...-+++|+.++...+ .+.....-+||+||+|||||++++.||++++. .+.++
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~-----~v~Ew 76 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF-----EVQEW 76 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----eeEEe
Confidence 344567888999999999999999886521 12233456889999999999999999999963 33333
Q ss_pred echhhh-------hh----------hHhHHHHHHHHH-HHHHHh-----------cCCeEEEEeCCCccCCCCCCchhhh
Q 003859 450 KGADVL-------SK----------WVGEAERQLKLL-FEEAQR-----------NQPSIIFFDEIDGLAPVRSSKQEQI 500 (791)
Q Consensus 450 ~~~~~~-------~~----------~~g~~~~~l~~l-f~~a~~-----------~~p~VL~IDEiD~L~~~~~~~~~~~ 500 (791)
.....+ .. +..... .+..+ +..++. ..+.||+|+|+-.++...
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~-~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------- 148 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSD-KFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------- 148 (519)
T ss_pred cCCCCccccccccccccccccccccccchhh-hhccccccccccccccccCCCcCCCceEEEeeccccccchh-------
Confidence 211110 00 111111 11111 111111 236799999997665321
Q ss_pred hHHHHHHHHHHHhccCCCC-cEEEecc-C------Cch--------hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHH
Q 003859 501 HNSIVSTLLALMDGLDSRG-QVVLIGA-T------NRV--------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (791)
Q Consensus 501 ~~~v~~~Ll~~l~~~~~~~-~vivIat-t------n~~--------~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~ 564 (791)
...+...|..++.. ... ++|||.+ + |.. ..+++.++...++ ..|.|.+-...-....|..+
T Consensus 149 ~~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 149 TSRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHH
Confidence 13444455555552 233 7777776 1 111 1355666553344 46889888887777767666
Q ss_pred HhcC--------CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 003859 565 TRKW--------KQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (791)
Q Consensus 565 l~~~--------~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~ 604 (791)
+... .......+++.|+..+.| ||+.++....+.+.
T Consensus 226 ~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 226 LKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 5543 112223456788877655 88888877776666
No 242
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.67 E-value=1.9e-07 Score=106.87 Aligned_cols=215 Identities=20% Similarity=0.242 Sum_probs=124.2
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEE-----EEEe
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF-----YMRK 450 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~-----~~i~ 450 (791)
..|.++.|...++..+.-. .....+++|+||||+|||+|++.|+..+........+ +.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 3677888888766654221 2345689999999999999999998765322111110 0000
Q ss_pred ch-----h-----hh--------hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 451 GA-----D-----VL--------SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 451 ~~-----~-----~~--------~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
+. . |. ...+|.....--..+..|.. .||||||++.+ ...++..|+..|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHH
Confidence 00 0 00 00111111111123444444 39999999765 456777888877
Q ss_pred hccC-----------CCCcEEEeccCCchh---------------------hhhhhhcCCCCccccccCCCCCHHH----
Q 003859 513 DGLD-----------SRGQVVLIGATNRVD---------------------AIDGALRRPGRFDREFNFPLPGCEA---- 556 (791)
Q Consensus 513 ~~~~-----------~~~~vivIattn~~~---------------------~Ld~aL~r~gRf~~~I~~~~Pd~ee---- 556 (791)
+.-. ...++.+|+|+|... .|+.+++. ||+..|.++.|+.++
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 5321 134689999998742 36678888 999999999885331
Q ss_pred ------HHHHHHHHH-------h---cCCC-----------CCCHHHHHHH--HHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 557 ------RAEILDIHT-------R---KWKQ-----------PPSRELKSEL--AASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 557 ------r~~IL~~~l-------~---~~~~-----------~~~~~~~~~L--A~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
...|.+... . .... .++......+ +....|+|.+....+++-|...|....
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 111221100 0 0011 1112111111 123457888888888888888887654
Q ss_pred CCCccCCCccccccccccceeHHHHHHHhc
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
.. .|+.+|+..|+.
T Consensus 477 ~~----------------~V~~~hv~eAl~ 490 (506)
T PRK09862 477 SD----------------IITRQHLQEAVS 490 (506)
T ss_pred CC----------------CCCHHHHHHHHH
Confidence 32 488999999874
No 243
>CHL00181 cbbX CbbX; Provisional
Probab=98.67 E-value=4.6e-08 Score=105.09 Aligned_cols=100 Identities=8% Similarity=-0.075 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCc------
Q 003859 657 VVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNW------ 730 (791)
Q Consensus 657 ~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~------ 730 (791)
.+++||....+++.+++..+ .....+.+.|+. +......+||+||||||||++|++++..+...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~----~~~~~~~~~g~~------~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~ 92 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALL----LIDRLRKNLGLT------SSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKG 92 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHH----HHHHHHHHcCCC------CCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 35677765555555443321 112333444432 11112259999999999999998888765321
Q ss_pred -----hhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 731 -----RNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 731 -----~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
....+...+. .....+|.+|. +.||||||++.+++.
T Consensus 93 ~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 93 HLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKP 137 (287)
T ss_pred ceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccC
Confidence 1111211121 22334555554 789999999998654
No 244
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.65 E-value=4.2e-07 Score=109.95 Aligned_cols=141 Identities=25% Similarity=0.308 Sum_probs=89.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE-echhhhhhhH-hH--HH-HHHHHHHHHHHhcCCeEEEEeCC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR-KGADVLSKWV-GE--AE-RQLKLLFEEAQRNQPSIIFFDEI 486 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i-~~~~~~~~~~-g~--~~-~~l~~lf~~a~~~~p~VL~IDEi 486 (791)
..+++||-|.||+|||.|+.+||+..+....++++..- +..++++.+. ++ .+ .....-|-.|.+.. .-|+|||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 34679999999999999999999999754333333211 1122222211 11 00 01112233333332 38899999
Q ss_pred CccCCCCCCchhhhhHHHHHHHHHHHhcc------------CCCCcEEEeccCCchh------hhhhhhcCCCCcccccc
Q 003859 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGL------------DSRGQVVLIGATNRVD------AIDGALRRPGRFDREFN 548 (791)
Q Consensus 487 D~L~~~~~~~~~~~~~~v~~~Ll~~l~~~------------~~~~~vivIattn~~~------~Ld~aL~r~gRf~~~I~ 548 (791)
. |+ ++.++..|-.+++.- ....++.|+||-|..+ .||..+.. ||. +|.
T Consensus 1621 N-La----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1621 N-LA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred h-hh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 4 33 567777777777642 1234677888877654 48999998 996 688
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 003859 549 FPLPGCEARAEILDIHTRK 567 (791)
Q Consensus 549 ~~~Pd~eer~~IL~~~l~~ 567 (791)
+...+..+...|...+...
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ecccccchHHHHHHhhCCc
Confidence 8888888888887766653
No 245
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.64 E-value=9.3e-08 Score=107.22 Aligned_cols=198 Identities=24% Similarity=0.296 Sum_probs=124.9
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
.....|+|.....++|.+.+... ......|||+|++||||.++|++|.....+. .-+|+.+||..+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~--~~PFVavNcaAip 204 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRA--KGPFIAVNCAAIP 204 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCccc--CCCceeeecccCC
Confidence 45678999999999999988652 2455689999999999999999998876544 4688999987654
Q ss_pred hh-----hHhHHH-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-----CC-
Q 003859 456 SK-----WVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----DS- 517 (791)
Q Consensus 456 ~~-----~~g~~~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-----~~- 517 (791)
.. .+|... ..-...|+.|..+ .||||||..| .-.++..||..|+.- ..
T Consensus 205 ~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 205 ENLLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCC
Confidence 33 233111 1112345555444 9999999876 356777788877642 11
Q ss_pred ---CCcEEEeccCCchhhhhhhhcCCCCcc-------ccccCCCCCHHHHH----HHHHHHHhc----C---CCCCCHHH
Q 003859 518 ---RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARA----EILDIHTRK----W---KQPPSREL 576 (791)
Q Consensus 518 ---~~~vivIattn~~~~Ld~aL~r~gRf~-------~~I~~~~Pd~eer~----~IL~~~l~~----~---~~~~~~~~ 576 (791)
.-.|-||++||.. |...+. .|+|. .++.+..|..-+|. -++++++.. + ...++...
T Consensus 271 ~~i~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 1257899999872 332222 13332 24556666554444 344444433 2 23445555
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 577 KSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 577 ~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
+..|....=--+.++|.|+|.+++..+
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 555544332235688888888877554
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.62 E-value=5e-07 Score=98.49 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCC-ccCCcHHHHHHHHHHHHcccCChhHhhhcCC-CCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 377 SFD-DIGGLSEYIDALKEMVFFPLLYPDFFASYHI-TPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 377 ~~~-~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~-~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
-|+ ++.|+++++.+|.+++.... .|. .....++|+||||||||+||++||+.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356 79999999999988875532 122 23467899999999999999999999965
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.62 E-value=5.2e-07 Score=94.38 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=49.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH---HHHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA---ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~---~~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
.+++|+|+||||||+|+.+||..+...+..+. .++..+++....... ......++.... ...||+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~--~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVL--IITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE--EEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 48999999999999999999999987665554 445566665433221 112223444332 46799999998653
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.62 E-value=3.3e-07 Score=100.22 Aligned_cols=166 Identities=27% Similarity=0.320 Sum_probs=106.0
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC--CceEE--EEE-
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSF--YMR- 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~--~~i- 449 (791)
.+.|.-++|++..+..|.-.... +.-.++||.|+.|+||||++|+||..|...- ..+.| --.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 46677899999999887543222 2335899999999999999999998874221 00100 000
Q ss_pred ---echhhhhh-------------------hHhHHHHHH------HHHHH----------HHHhcCCeEEEEeCCCccCC
Q 003859 450 ---KGADVLSK-------------------WVGEAERQL------KLLFE----------EAQRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 450 ---~~~~~~~~-------------------~~g~~~~~l------~~lf~----------~a~~~~p~VL~IDEiD~L~~ 491 (791)
.|..+..+ -.+.++..+ ..+.. .++.+ ..||+|||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--
Confidence 00000111 011122211 11111 11111 249999999766
Q ss_pred CCCCchhhhhHHHHHHHHHHHhcc-----------CCCCcEEEeccCCchh-hhhhhhcCCCCccccccCCCC-CHHHHH
Q 003859 492 VRSSKQEQIHNSIVSTLLALMDGL-----------DSRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLP-GCEARA 558 (791)
Q Consensus 492 ~~~~~~~~~~~~v~~~Ll~~l~~~-----------~~~~~vivIattn~~~-~Ld~aL~r~gRf~~~I~~~~P-d~eer~ 558 (791)
...++..||+.+..- ....++++|+|+|.-+ .|-+.|+. ||...|.+..| +.++|.
T Consensus 157 ---------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 157 ---------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ---------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 567888888887641 2345789999999854 58888888 99999988766 678899
Q ss_pred HHHHHHHhc
Q 003859 559 EILDIHTRK 567 (791)
Q Consensus 559 ~IL~~~l~~ 567 (791)
+|++..+.-
T Consensus 226 ~Ii~r~~~f 234 (423)
T COG1239 226 EIIRRRLAF 234 (423)
T ss_pred HHHHHHHHh
Confidence 999877764
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.3e-07 Score=101.33 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=92.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC--------------------CceEEEEEechhh---hhhh-HhHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG--------------------QKVSFYMRKGADV---LSKW-VGEAERQL 466 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~--------------------~~~~~~~i~~~~~---~~~~-~g~~~~~l 466 (791)
+.+..+||+||+|+|||++|+.+|+.+.... .+-.|+.+....- .++. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 5567899999999999999999999974311 1123333332110 0000 00123445
Q ss_pred HHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCC
Q 003859 467 KLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGR 542 (791)
Q Consensus 467 ~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gR 542 (791)
+.+...+.. ...-|++||+++.| .....+.|+..|+... ..+++|.+|+.+..+.+.+.+ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 666555543 23459999999988 3556777888888653 346677788888999999988 8
Q ss_pred ccccccCCCCCHHHHHHHHHH
Q 003859 543 FDREFNFPLPGCEARAEILDI 563 (791)
Q Consensus 543 f~~~I~~~~Pd~eer~~IL~~ 563 (791)
+. .+.|++|+.++..+.|..
T Consensus 164 c~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 CR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hh-hhcCCCCCHHHHHHHHHh
Confidence 84 789999999988877754
No 250
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.61 E-value=6.3e-08 Score=102.93 Aligned_cols=61 Identities=8% Similarity=0.033 Sum_probs=41.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCch-----------hHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWR-----------NFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~-----------~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
++||+||||||||++|+.++..+.... ...+...+ .....++|.+|. ++||||||++.++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR 119 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc
Confidence 699999999999999888887653211 11111111 133455666664 78999999999873
No 251
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9.8e-07 Score=105.47 Aligned_cols=130 Identities=26% Similarity=0.348 Sum_probs=96.1
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh---
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS--- 456 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~--- 456 (791)
.|+|+++++..|-++|...-. .+... .+...+||.||.|+|||-||++||..+. +..-.|+.++.+.+..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~--gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA--GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc--ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhhhhh
Confidence 589999999999999977421 11110 2566899999999999999999999985 3456778888776433
Q ss_pred ------hhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC---------CCcE
Q 003859 457 ------KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQV 521 (791)
Q Consensus 457 ------~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------~~~v 521 (791)
.|+|..+ ...+.+.++..+.+||+|||||.- +..+++.|+.+|+...- ..++
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 1333332 346677777788899999999744 67889999999986432 2468
Q ss_pred EEeccCCc
Q 003859 522 VLIGATNR 529 (791)
Q Consensus 522 ivIattn~ 529 (791)
|||+|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 99999876
No 252
>PRK08181 transposase; Validated
Probab=98.61 E-value=3.1e-07 Score=97.41 Aligned_cols=104 Identities=24% Similarity=0.362 Sum_probs=63.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhH-HHHHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~-~~~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
...+++|+||||||||+||.+||+++...++.+.|+ +..+++..+... ....+..++... ..+.+|+|||++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~--~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT--RTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee--eHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 446899999999999999999999998777666554 445555543221 111222333332 245699999998764
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 491 ~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
.. ......|+.+++...... .+|.|||.+
T Consensus 181 ~~---------~~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 181 KD---------QAETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred CC---------HHHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 31 223345555555433332 355566653
No 253
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.60 E-value=1.9e-06 Score=89.50 Aligned_cols=129 Identities=20% Similarity=0.132 Sum_probs=91.1
Q ss_pred CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc------------hhhhhhhhcCCCCccc
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~------------~~~Ld~aL~r~gRf~~ 545 (791)
|.||||||+|.|- -.-++.|-..++. .-.+ ++|.+||+ |.-+|-.|+. |. .
T Consensus 289 pGVLFIDEvHMLD-----------IEcFsFlNrAlE~--d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD-----------IECFSFLNRALEN--DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-L 351 (454)
T ss_pred cceEEEeeehhhh-----------hHHHHHHHHHhhh--ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-h
Confidence 7788888888762 1222223333331 2223 44444543 4557777776 66 4
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCcccccccccc
Q 003859 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSV 625 (791)
Q Consensus 546 ~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 625 (791)
+|...+++.++..+||+..+.......+++.++.|......-+.+...+|+..|...|.++...
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~---------------- 415 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK---------------- 415 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc----------------
Confidence 6788889999999999999999888888888888887777777888889999999999888643
Q ss_pred ceeHHHHHHHhccc
Q 003859 626 TVEKYHFIEAMSTI 639 (791)
Q Consensus 626 ~lt~~df~~Al~~~ 639 (791)
.+..+|+..+..-|
T Consensus 416 ~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 416 VVEVDDIERVYRLF 429 (454)
T ss_pred eeehhHHHHHHHHH
Confidence 46667777765433
No 254
>PRK06526 transposase; Provisional
Probab=98.60 E-value=2e-07 Score=98.29 Aligned_cols=75 Identities=27% Similarity=0.442 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhH-HHHHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~-~~~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
.+.+++|+||||||||+||.+|+.++...++.+.|+ ....++...... ....+...+... ..+.||+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~--t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA--TAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh--hHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 456899999999999999999999998777666553 334444332211 111122222222 345799999998764
No 255
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.59 E-value=3.9e-07 Score=109.02 Aligned_cols=170 Identities=17% Similarity=0.142 Sum_probs=95.0
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhH--------hhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC--ceEEEE
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDF--------FASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYM 448 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~--------~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~ 448 (791)
..|.|.+.+|..|.-.+......... +....++...+|||+|+||||||.+|+++++...+..+ ...+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 35788888888875554332110000 00022344568999999999999999999986532210 012222
Q ss_pred EechhhhhhhHhH-HHHH-H-HHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---------
Q 003859 449 RKGADVLSKWVGE-AERQ-L-KLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------- 516 (791)
Q Consensus 449 i~~~~~~~~~~g~-~~~~-l-~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--------- 516 (791)
+.+..... +... .... + ...+..| ...++|||||+.+ ....+..|+..|+.-.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcc
Confidence 22221111 0000 0000 0 0011111 1349999999987 3456667777776421
Q ss_pred --CCCcEEEeccCCchh-------------hhhhhhcCCCCccccc-cCCCCCHHHHHHHHHHHH
Q 003859 517 --SRGQVVLIGATNRVD-------------AIDGALRRPGRFDREF-NFPLPGCEARAEILDIHT 565 (791)
Q Consensus 517 --~~~~vivIattn~~~-------------~Ld~aL~r~gRf~~~I-~~~~Pd~eer~~IL~~~l 565 (791)
-...+.||||+|... .|+++|++ ||+.++ .++.|+.+.=..|..+++
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 124689999999752 37899999 998664 457777665455544433
No 256
>PRK06921 hypothetical protein; Provisional
Probab=98.58 E-value=3e-07 Score=97.79 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
...+++|+||+|+|||+|+.+||+++... +..+.|+ ....++....... ..+...+... ....||+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~--~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF--PFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE--EHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999998765 5555444 3444443321111 1112222222 3456999999953
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.58 E-value=4.5e-07 Score=95.73 Aligned_cols=105 Identities=25% Similarity=0.303 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHH-HHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAER-QLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~-~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
...+++|+||||||||+||-|||+++...+..+.| +...+++......... ....-+... -....|||||||-..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f--~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF--ITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--EEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc
Confidence 56799999999999999999999999866655555 4556666554332221 111111111 1223599999996543
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 491 ~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
. .......|+.++......... |.|+|.+
T Consensus 181 ~---------~~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 181 F---------SQEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred C---------CHHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 1 122223334444433333333 7777764
No 258
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.57 E-value=3.7e-07 Score=99.62 Aligned_cols=106 Identities=19% Similarity=0.314 Sum_probs=62.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH---HHHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA---ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~---~~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
.+++|+||+|||||+||.+||+++...+..|.| ++...++....... .......+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y--~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY--RTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE--EEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC
Confidence 789999999999999999999999877765554 44555554432210 01111112222 234699999997653
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc-hhhh
Q 003859 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDAI 533 (791)
Q Consensus 491 ~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~-~~~L 533 (791)
. .......|+.+++.....+.-+ |.|||. +..+
T Consensus 260 ~---------t~~~~~~Lf~iin~R~~~~k~t-IiTSNl~~~el 293 (329)
T PRK06835 260 I---------TEFSKSELFNLINKRLLRQKKM-IISTNLSLEEL 293 (329)
T ss_pred C---------CHHHHHHHHHHHHHHHHCCCCE-EEECCCCHHHH
Confidence 2 2233455666666543333334 445554 4443
No 259
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.53 E-value=2.8e-07 Score=105.58 Aligned_cols=196 Identities=20% Similarity=0.199 Sum_probs=115.5
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
.+..++|.......+...+... .....+++|+|++||||+++|+++....... ..+|+.++|..+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~v~v~c~~~~~ 203 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRK--DKRFVAINCAAIPE 203 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcC--CCCeEEEECCCCCh
Confidence 4556788877777776655431 1334579999999999999999998765432 35688888876533
Q ss_pred hhHhHH-----H-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--C-----
Q 003859 457 KWVGEA-----E-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S----- 517 (791)
Q Consensus 457 ~~~g~~-----~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--~----- 517 (791)
..+... . .....+|.. ....+|||||++.|. ..++..|+.+++.-. .
T Consensus 204 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 204 NLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred HHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCc
Confidence 221110 0 000011212 224599999999883 556777777776321 0
Q ss_pred --CCcEEEeccCCch-hh------hhhhhcCCCCccccccCCCCCHHHHH----HHHHHHHhc----CC---CCCCHHHH
Q 003859 518 --RGQVVLIGATNRV-DA------IDGALRRPGRFDREFNFPLPGCEARA----EILDIHTRK----WK---QPPSRELK 577 (791)
Q Consensus 518 --~~~vivIattn~~-~~------Ld~aL~r~gRf~~~I~~~~Pd~eer~----~IL~~~l~~----~~---~~~~~~~~ 577 (791)
...+.||++|+.. .. +.+.|.. |+. .+.+..|...+|. .|+.+++.. +. ..++.+.+
T Consensus 270 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 346 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDAL 346 (445)
T ss_pred eeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 1246777777653 11 2222322 332 2445555555444 344444433 22 34677777
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 578 SELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 578 ~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|....=--+.++|++++.+|+..
T Consensus 347 ~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 347 RALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHh
Confidence 7777665455778999999887753
No 260
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.53 E-value=2.1e-07 Score=100.05 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCc--------
Q 003859 659 APCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNW-------- 730 (791)
Q Consensus 659 IggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~-------- 730 (791)
++||....+++.+++..+ .....+.+.|+.. ..+..++||+||||||||++|++++..+...
T Consensus 24 l~Gl~~vk~~i~e~~~~~----~~~~~r~~~g~~~------~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~ 93 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALL----LVERLRQRLGLAS------AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHL 93 (284)
T ss_pred ccCHHHHHHHHHHHHHHH----HHHHHHHHhCCCc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceE
Confidence 456654444444433321 1234455555431 1122379999999999998887777665321
Q ss_pred ---hhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 731 ---RNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 731 ---~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
....+...+. ..+..+|..+. ++||||||++.++.
T Consensus 94 v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 94 VSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYR 135 (284)
T ss_pred EEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhcc
Confidence 1111211111 23344555553 79999999998854
No 261
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=4.9e-07 Score=95.83 Aligned_cols=105 Identities=27% Similarity=0.384 Sum_probs=63.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhH-HHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~-~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
....+++|+||||||||+||.+|+..+...++.+.|+ +...+...+... ....+..++... ...+.+|+|||++.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~--~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT--TAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--eHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3456899999999999999999999877667666554 444554332211 111233444433 235679999999765
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 490 ~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
... ......|+.+++....... +|.|||.
T Consensus 177 ~~~---------~~~~~~lf~li~~r~~~~s--~iiTsn~ 205 (259)
T PRK09183 177 PFS---------QEEANLFFQVIAKRYEKGS--MILTSNL 205 (259)
T ss_pred CCC---------hHHHHHHHHHHHHHHhcCc--EEEecCC
Confidence 321 1223345555554333333 4556766
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.49 E-value=5.4e-07 Score=97.63 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHH-HHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~-~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
...|++|+||+|||||+||.+||+++...++.+.|+.+ ..++........ ..+...+... ....||+||||...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~--~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF--PEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH--HHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999999877777766554 455443322111 1223333332 23469999999644
No 263
>PF05729 NACHT: NACHT domain
Probab=98.46 E-value=3.5e-06 Score=82.14 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=80.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCc----eEEEEEechhhhhh--------h----HhHHHHHHHH-HHHHHHhcC
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQK----VSFYMRKGADVLSK--------W----VGEAERQLKL-LFEEAQRNQ 477 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~----~~~~~i~~~~~~~~--------~----~g~~~~~l~~-lf~~a~~~~ 477 (791)
-++|+|+||+|||++++.++..+...... ..++.+........ . .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999999998665421 11222222221110 0 1111111111 122233455
Q ss_pred CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc-cCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHH
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG-LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~-~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~ee 556 (791)
..+|+||.+|.+...... .........|..++.. +....+++|.+.+.....+...+.. . ..+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHHH
Confidence 789999999998753221 1122333334444443 2223334443333333334444433 1 468889999999
Q ss_pred HHHHHHHHHhc
Q 003859 557 RAEILDIHTRK 567 (791)
Q Consensus 557 r~~IL~~~l~~ 567 (791)
..++++.++..
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 264
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2.7e-06 Score=90.70 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc-----------CCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-----------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR---- 475 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-----------~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~---- 475 (791)
..+..+||+||.|+||+++|.++|+.+-.. +.+-.++.+.... .+..+ ....++.+...+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 456789999999999999999999988532 1122222221110 00000 12234444444332
Q ss_pred cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCC
Q 003859 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (791)
Q Consensus 476 ~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~P 552 (791)
...-|++|+++|.| .....+.||..|+. +..++++|..|+.++.|.+.+++ |+. .+.|+++
T Consensus 94 ~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRM-----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CCceEEEEechhhc-----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 23459999999988 45677889999994 66788888889999999999998 885 5677765
No 265
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.40 E-value=3.5e-06 Score=99.26 Aligned_cols=51 Identities=29% Similarity=0.475 Sum_probs=43.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
++..|++|+|+++++..|..++.. ..++||+||||||||++|+++++.+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 567899999999999998876643 237999999999999999999988753
No 266
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.40 E-value=1.6e-06 Score=100.11 Aligned_cols=198 Identities=20% Similarity=0.209 Sum_probs=118.3
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
.+.+++|.......+...+... ......|||+|++|||||++|++|...... ...+|+.++|..+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~i~i~c~~~~~ 202 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPR--AKAPFIALNMAAIPK 202 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCC--CCCCeEeeeCCCCCH
Confidence 4567888887777776665431 134457999999999999999999886542 246788888876533
Q ss_pred hhH-----hHHHH-------HHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----C--
Q 003859 457 KWV-----GEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (791)
Q Consensus 457 ~~~-----g~~~~-------~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----~-- 517 (791)
... |.... .....|..+ ....|||||++.|. ..++..|+..++... .
T Consensus 203 ~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 203 DLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred HHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCC
Confidence 211 10000 000112222 23489999999884 456667777776421 0
Q ss_pred --CCcEEEeccCCchh-------hhhhhhcCCCCc-cccccCCCCCH--HHHHHHHHHHHhc----CC---CCCCHHHHH
Q 003859 518 --RGQVVLIGATNRVD-------AIDGALRRPGRF-DREFNFPLPGC--EARAEILDIHTRK----WK---QPPSRELKS 578 (791)
Q Consensus 518 --~~~vivIattn~~~-------~Ld~aL~r~gRf-~~~I~~~~Pd~--eer~~IL~~~l~~----~~---~~~~~~~~~ 578 (791)
...+.||+||+..- .+.+.|.. || ...|.+|+... ++...|+.+++.. +. ..++.+.+.
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 346 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12456777776521 23344444 55 33444554322 4445566655543 21 235677777
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 579 ELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 579 ~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|....=--+.++|++++++|+..+
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 7776665567899999998877543
No 267
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=7.4e-06 Score=104.48 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=113.3
Q ss_pred CCCCcchHHHHhhccccCCCCCCCCCCCCCcccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEE
Q 003859 340 WGHQGDTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLC 419 (791)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~ 419 (791)
|......+..+...+..... ..+...+++++|++..++.|...+.. .......|-|+
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~------------~~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~ 213 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLN------------LTPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIW 213 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhc------------cccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEE
Confidence 33344456666555544321 12445678899999999999887643 12345678899
Q ss_pred cCCCChHHHHHHHHHHHHhhcCCceEEEEE---ec-hhhhh-----h---hHhHHHHHHH-------------HHHHHHH
Q 003859 420 GPPGTGKTLIARALACAASKAGQKVSFYMR---KG-ADVLS-----K---WVGEAERQLK-------------LLFEEAQ 474 (791)
Q Consensus 420 GppGtGKT~laralA~~l~~~~~~~~~~~i---~~-~~~~~-----~---~~g~~~~~l~-------------~lf~~a~ 474 (791)
|++|+||||||+++++.+........|+.. .. ..... . ........+. ..+....
T Consensus 214 G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L 293 (1153)
T PLN03210 214 GSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERL 293 (1153)
T ss_pred cCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHH
Confidence 999999999999999888654322222210 00 00000 0 0000000011 1122223
Q ss_pred hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCH
Q 003859 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGC 554 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~ 554 (791)
...+.+|+||+++.. .++..|......+ ..+. .||.||.....+.. ..++.++.++.|+.
T Consensus 294 ~~krvLLVLDdv~~~-------------~~l~~L~~~~~~~-~~Gs-rIIiTTrd~~vl~~-----~~~~~~~~v~~l~~ 353 (1153)
T PLN03210 294 KHRKVLIFIDDLDDQ-------------DVLDALAGQTQWF-GSGS-RIIVITKDKHFLRA-----HGIDHIYEVCLPSN 353 (1153)
T ss_pred hCCeEEEEEeCCCCH-------------HHHHHHHhhCccC-CCCc-EEEEEeCcHHHHHh-----cCCCeEEEecCCCH
Confidence 455789999998632 2333343322221 2233 34445655433321 23456788999999
Q ss_pred HHHHHHHHHHHhcCCCCCC--HHHHHHHHHHccCCC
Q 003859 555 EARAEILDIHTRKWKQPPS--RELKSELAASCVGYC 588 (791)
Q Consensus 555 eer~~IL~~~l~~~~~~~~--~~~~~~LA~~t~G~s 588 (791)
++..+++..++-+...... ..+...++..+.|+.
T Consensus 354 ~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 354 ELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 9999999887654332221 133455677777765
No 268
>PRK06851 hypothetical protein; Provisional
Probab=98.38 E-value=6.1e-06 Score=90.85 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
+-++|.|+||||||+|++.|+..+...++.+.++.+
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~ 66 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHC 66 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 458999999999999999999999877777776543
No 269
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.37 E-value=2.6e-06 Score=90.08 Aligned_cols=166 Identities=19% Similarity=0.333 Sum_probs=106.1
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh--
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK-- 457 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~-- 457 (791)
.+.|..+..+.|.+++.....+ ...+.|++.||.|+|||+++...-......+-++-.+.+++.-...+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4678888888888877653211 34578999999999999987766555444455555556665332211
Q ss_pred -----------------hHhHHHHHHHHHHHHHHhc-----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc
Q 003859 458 -----------------WVGEAERQLKLLFEEAQRN-----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL 515 (791)
Q Consensus 458 -----------------~~g~~~~~l~~lf~~a~~~-----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~ 515 (791)
.+|.....+..++...... .+.|+++||||.+++- ..+..++.|+...+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-------~rQtllYnlfDisq-- 166 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-------SRQTLLYNLFDISQ-- 166 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-------hhhHHHHHHHHHHh--
Confidence 1233344445555444432 2567778899988753 13345555555544
Q ss_pred CCCCcEEEeccCCch---hhhhhhhcCCCCcccc-ccCCC-CCHHHHHHHHHHHH
Q 003859 516 DSRGQVVLIGATNRV---DAIDGALRRPGRFDRE-FNFPL-PGCEARAEILDIHT 565 (791)
Q Consensus 516 ~~~~~vivIattn~~---~~Ld~aL~r~gRf~~~-I~~~~-Pd~eer~~IL~~~l 565 (791)
..+.+|.||+.|.+. +.|...+.+ ||.+. |++++ ....+...|++..+
T Consensus 167 s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 346789999988775 457788888 99765 55544 46788888888777
No 270
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.37 E-value=2.9e-07 Score=87.98 Aligned_cols=106 Identities=30% Similarity=0.428 Sum_probs=65.0
Q ss_pred CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH
Q 003859 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA 462 (791)
Q Consensus 383 G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~ 462 (791)
|.....+.|++.+... . .....|||+|++||||+++|++|...... ....|+.+++....
T Consensus 2 G~S~~~~~l~~~l~~~-------a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-------A----KSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH-------H----CSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-------
T ss_pred CCCHHHHHHHHHHHHH-------h----CCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-------
Confidence 4455556666555441 1 34467999999999999999999986543 23445555555432
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 463 ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 463 ~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
..+++.+ ...+|||+++|.| ....+..|+.++.... ..++-+|+++
T Consensus 62 ----~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~RlI~ss 107 (138)
T PF14532_consen 62 ----AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE-RSNVRLIASS 107 (138)
T ss_dssp ----HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT-TTTSEEEEEE
T ss_pred ----HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC-CCCeEEEEEe
Confidence 2344444 4569999999988 4556677777777543 3334444444
No 271
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.36 E-value=4.8e-07 Score=90.43 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=59.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH-HHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~-~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
....+++|+||+|||||+||.++++++...++.+.|+ +..+++....... ......++.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~--~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI--TASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe--ecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 4467899999999999999999999998877666554 4555655432111 111223333333 3459999999533
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 490 ~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
. ........|+.+++.-.... .+|.|||.
T Consensus 121 ~---------~~~~~~~~l~~ii~~R~~~~--~tIiTSN~ 149 (178)
T PF01695_consen 121 P---------LSEWEAELLFEIIDERYERK--PTIITSNL 149 (178)
T ss_dssp ------------HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred e---------ecccccccchhhhhHhhccc--CeEeeCCC
Confidence 2 12233445555665443332 34457776
No 272
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.6e-07 Score=101.26 Aligned_cols=48 Identities=35% Similarity=0.530 Sum_probs=40.0
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
...|.||+|++..|..|.-... ...|+||+||||||||+||+.+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4579999999999999966542 34689999999999999999886554
No 273
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.32 E-value=1.7e-06 Score=99.41 Aligned_cols=196 Identities=22% Similarity=0.234 Sum_probs=111.6
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
.+..++|.......+.+.+... ......+||+|++||||+++|+++....... ..+|+.++|..+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~~~i~c~~~~~ 207 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRA--KGPFIKVNCAALPE 207 (457)
T ss_pred cccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCC--CCCeEEEECCCCCH
Confidence 3456777766666665544331 1334679999999999999999998765432 35778888876532
Q ss_pred hhH-----hHHHHH-------HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----C--
Q 003859 457 KWV-----GEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (791)
Q Consensus 457 ~~~-----g~~~~~-------l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----~-- 517 (791)
... |..... ...+|..+ ...+|||||++.|. ..++..|+..++.-. .
T Consensus 208 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 208 SLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCc
Confidence 211 100000 00112222 23599999999884 456677777776421 0
Q ss_pred --CCcEEEeccCCchhh-------hhhhhcCCCCccccccCCCCCHHHHH----HHHHHHHhcC----C---CCCCHHHH
Q 003859 518 --RGQVVLIGATNRVDA-------IDGALRRPGRFDREFNFPLPGCEARA----EILDIHTRKW----K---QPPSRELK 577 (791)
Q Consensus 518 --~~~vivIattn~~~~-------Ld~aL~r~gRf~~~I~~~~Pd~eer~----~IL~~~l~~~----~---~~~~~~~~ 577 (791)
...+.||++|+..-. +.+.|.. |+. .+.+..|...+|. .|+..++..+ . ..++.+.+
T Consensus 274 ~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 350 (457)
T PRK11361 274 TIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350 (457)
T ss_pred eeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 124678888875311 2222222 221 3445555555443 3444444332 1 34567776
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 578 SELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 578 ~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|....=--+.++|.+++.+|+..
T Consensus 351 ~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 351 SLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 6666655445678888888887643
No 274
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=4.2e-06 Score=78.95 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=42.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
..++|+||.|||||++++.+++.+. .. -.++.++..+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~--~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PP--ENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-cc--ccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998874 11 23344444333221111111 222222222225679999999866
No 275
>PRK15115 response regulator GlrR; Provisional
Probab=98.31 E-value=1.8e-06 Score=98.86 Aligned_cols=171 Identities=22% Similarity=0.301 Sum_probs=101.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHH-----HH-------HHHHHHHHHHhcCCeE
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-----ER-------QLKLLFEEAQRNQPSI 480 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~-----~~-------~l~~lf~~a~~~~p~V 480 (791)
...|+|+|++|||||++|+++....... ..+|+.++|..+........ .. ....+|..+ ...+
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~--~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gt 231 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRA--SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGT 231 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCC--CCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCE
Confidence 4569999999999999999998876433 46788888876533221110 00 000012222 2358
Q ss_pred EEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC---------CCcEEEeccCCchhhhhhhhcCCCCcc-------
Q 003859 481 IFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQVVLIGATNRVDAIDGALRRPGRFD------- 544 (791)
Q Consensus 481 L~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------~~~vivIattn~~~~Ld~aL~r~gRf~------- 544 (791)
|||||++.|. ..++..|+..|+.-.. ...+.+|++|+.. +...+.. |+|.
T Consensus 232 l~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 232 LFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhh
Confidence 9999999884 4566677777753210 1256788887752 3333322 3441
Q ss_pred ccccCCCCCHHHHH----HHHHHHHhc----CC---CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 545 REFNFPLPGCEARA----EILDIHTRK----WK---QPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 545 ~~I~~~~Pd~eer~----~IL~~~l~~----~~---~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..+.+..|...+|. .|+++++.. .. ..++.+.+..|....=.-+.++|.+++..|+..
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 12345555555543 344444433 21 236778877777766455778888988887653
No 276
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.30 E-value=1e-05 Score=86.81 Aligned_cols=179 Identities=18% Similarity=0.253 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH--hhcCCceEEEEEech----hhhhhh
Q 003859 385 SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA--SKAGQKVSFYMRKGA----DVLSKW 458 (791)
Q Consensus 385 e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l--~~~~~~~~~~~i~~~----~~~~~~ 458 (791)
+..+++|.+.+... ......|.|+|++|+|||+||..+++.. ...+..+.++.+... .+....
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45666676665441 1345679999999999999999999884 333323333443321 111111
Q ss_pred H---h----------HHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec
Q 003859 459 V---G----------EAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (791)
Q Consensus 459 ~---g----------~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa 525 (791)
. + .... +...+.......+++|+||+++... .+..+...+... ..+..||.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~~~kilv 134 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEE-LQDQLRELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSF--SSGSKILV 134 (287)
T ss_dssp HHHHTCC-STSSCCSSHHH-HHHHHHHHHCCTSEEEEEEEE-SHH-------------HH-------HCH--HSS-EEEE
T ss_pred ccccccccccccccccccc-ccccchhhhccccceeeeeeecccc-------------cccccccccccc--cccccccc
Confidence 1 0 1122 3333334444558999999986331 222233322211 12344555
Q ss_pred cCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHccCCCHHHHHHH
Q 003859 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK---QPPSRELKSELAASCVGYCGADLKAL 595 (791)
Q Consensus 526 ttn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~---~~~~~~~~~~LA~~t~G~s~~di~~l 595 (791)
||.... +...+.. . ...+.++..+.++..++|........ ..........|+..+.|+ |-.|..+
T Consensus 135 TTR~~~-v~~~~~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 135 TTRDRS-VAGSLGG--T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp EESCGG-GGTTHHS--C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccccccc--c-ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 665432 2222221 1 35788999999999999998876533 122244557889988774 4555444
No 277
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=3.1e-06 Score=79.56 Aligned_cols=103 Identities=23% Similarity=0.400 Sum_probs=57.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhc---CCceEEEEEechhhh--hhhHh--------------HHHHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKA---GQKVSFYMRKGADVL--SKWVG--------------EAERQLKLLFEEA 473 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~---~~~~~~~~i~~~~~~--~~~~g--------------~~~~~l~~lf~~a 473 (791)
...++|+||+|+|||++++.++..+... .....++.+++.... ..+.. ........+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999988532 013455555543322 11110 1223333444444
Q ss_pred HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 474 QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
......+|+|||+|.|. ...+++.|..+++ ...-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444599999999863 1455556655555 222234444444
No 278
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.28 E-value=5.2e-06 Score=97.10 Aligned_cols=189 Identities=16% Similarity=0.114 Sum_probs=118.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhH--HHHHH--------HHHHHHHHhcCCeEEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE--AERQL--------KLLFEEAQRNQPSIIFF 483 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~--~~~~l--------~~lf~~a~~~~p~VL~I 483 (791)
.||||.|++|+||++++++|+..+.. ..+|..+....-....+|. .+..+ -.++..|. ..||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~l 99 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVL 99 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEe
Confidence 58999999999999999999998753 1333332222111222222 11111 11222222 249999
Q ss_pred eCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-----------CCCCcEEEeccCCch---hhhhhhhcCCCCccccccC
Q 003859 484 DEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----------DSRGQVVLIGATNRV---DAIDGALRRPGRFDREFNF 549 (791)
Q Consensus 484 DEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-----------~~~~~vivIattn~~---~~Ld~aL~r~gRf~~~I~~ 549 (791)
||+..+ ...++..|+..|+.- ....+++||++-|.. ..|+++|+. ||...|.+
T Consensus 100 De~n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 100 AMAERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCcccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 999766 577899999998742 113468888874432 348899999 99999999
Q ss_pred CCCCHHHHH-------HHHHHHHhcCCCCCCHHHHHHHHHHc--cCC-CHHHHHHHHHHHHHHHHHhhCCCccCCCcccc
Q 003859 550 PLPGCEARA-------EILDIHTRKWKQPPSRELKSELAASC--VGY-CGADLKALCTEAAIRAFREKYPQVYTSDDKFL 619 (791)
Q Consensus 550 ~~Pd~eer~-------~IL~~~l~~~~~~~~~~~~~~LA~~t--~G~-s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~ 619 (791)
..|+..+.. .|+...-.--...++..++..++..+ .|. +.+....+++-|...|......
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~---------- 236 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRT---------- 236 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCC----------
Confidence 988765432 23322211123455666666665543 354 6677778888888888766543
Q ss_pred ccccccceeHHHHHHHhc
Q 003859 620 IDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 620 ~~~~~~~lt~~df~~Al~ 637 (791)
.|+.+|+..|+.
T Consensus 237 ------~V~~~dv~~Aa~ 248 (584)
T PRK13406 237 ------AVEEEDLALAAR 248 (584)
T ss_pred ------CCCHHHHHHHHH
Confidence 477788877754
No 279
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.28 E-value=3.9e-06 Score=96.66 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=116.1
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~ 458 (791)
..++|.......+...+... ......++|.|.+||||+++|+++...... ...+|+.++|..+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~~~~~ 200 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAIPKDL 200 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHH
Confidence 45788877777766655431 133457999999999999999999876543 24678888887653322
Q ss_pred H-----hHHHHH-------HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----C----
Q 003859 459 V-----GEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S---- 517 (791)
Q Consensus 459 ~-----g~~~~~-------l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----~---- 517 (791)
. |..... ....|. .....+|||||++.|. ..++..|+..++... .
T Consensus 201 ~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 201 IESELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred HHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCcee
Confidence 1 100000 000111 1224689999999884 445667777776321 0
Q ss_pred CCcEEEeccCCch-h------hhhhhhcCCCCcc-ccccCCCCC--HHHHHHHHHHHHhcC----C---CCCCHHHHHHH
Q 003859 518 RGQVVLIGATNRV-D------AIDGALRRPGRFD-REFNFPLPG--CEARAEILDIHTRKW----K---QPPSRELKSEL 580 (791)
Q Consensus 518 ~~~vivIattn~~-~------~Ld~aL~r~gRf~-~~I~~~~Pd--~eer~~IL~~~l~~~----~---~~~~~~~~~~L 580 (791)
...+.||++|+.. . .+.+.|.. |+. ..|.+|+.. .++...++.+++... . ..++.+.+..|
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 267 KVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 1245677777653 1 12233333 332 356666655 456666666655432 2 34567777767
Q ss_pred HHHccCCCHHHHHHHHHHHHHHH
Q 003859 581 AASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 581 A~~t~G~s~~di~~l~~~A~~~a 603 (791)
....=--+.++|.+++.+|+..+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 66543345688999998887644
No 280
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.26 E-value=3.5e-06 Score=86.33 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=55.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec--hhhhhhhH-------------------hHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG--ADVLSKWV-------------------GEAERQLK 467 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~--~~~~~~~~-------------------g~~~~~l~ 467 (791)
|+....-++|+||||||||+++..++......+..+.|+.... ...+.... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 6677788999999999999999999988766666676666543 11111100 01112244
Q ss_pred HHHHHHHhcCCeEEEEeCCCccCC
Q 003859 468 LLFEEAQRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 468 ~lf~~a~~~~p~VL~IDEiD~L~~ 491 (791)
.+...+....+.+|+||-|..++.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 444445556788999999998864
No 281
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.25 E-value=1.8e-05 Score=82.84 Aligned_cols=189 Identities=18% Similarity=0.174 Sum_probs=109.9
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE--echhhh-h
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR--KGADVL-S 456 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i--~~~~~~-~ 456 (791)
.|.|+.-+++.|...|...+..+. .+.|-.+=|+|++||||.++++.||+.+...|.+.+|+.. ....+- .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 378998888888887766443322 2455667799999999999999999999877655554311 001111 1
Q ss_pred hhHhHHH-HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-----CCcEEEeccCCch
Q 003859 457 KWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-----RGQVVLIGATNRV 530 (791)
Q Consensus 457 ~~~g~~~-~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~-----~~~vivIattn~~ 530 (791)
+++..-. +....+...+..++.+|+++||+|.|- ..++..|--.++.+.. ..+.|+|.-+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp-----------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP-----------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC-----------HhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 1122222 222344455667778899999999883 4455555555553221 1233444444332
Q ss_pred h-hh----------------------hhhh-----------------cCCCCccccccCCCCCHHHHHHHHHHHHhcCCC
Q 003859 531 D-AI----------------------DGAL-----------------RRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ 570 (791)
Q Consensus 531 ~-~L----------------------d~aL-----------------~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~ 570 (791)
. .| .++| ....+++..|.|.+.+...-..-++..+.+.+.
T Consensus 226 g~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~ 305 (344)
T KOG2170|consen 226 GSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGL 305 (344)
T ss_pred chHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhccc
Confidence 1 11 1111 111234555666666666666666777766666
Q ss_pred CCCHHHHHHHHHHcc
Q 003859 571 PPSRELKSELAASCV 585 (791)
Q Consensus 571 ~~~~~~~~~LA~~t~ 585 (791)
..+.++++.+|....
T Consensus 306 ~~d~~~~erva~~l~ 320 (344)
T KOG2170|consen 306 APDQDFVERVANSLS 320 (344)
T ss_pred ccchHHHHHHHHhhc
Confidence 667666666665543
No 282
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.5e-05 Score=84.18 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=88.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc--------CCceEEEEEe--chhhhhhhHhHHHHHHHHHHHHHHh-----c
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKA--------GQKVSFYMRK--GADVLSKWVGEAERQLKLLFEEAQR-----N 476 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~--------~~~~~~~~i~--~~~~~~~~~g~~~~~l~~lf~~a~~-----~ 476 (791)
.+...||+|+.|+||+++|+.+++.+-.. .....+..++ +..+ ....++.+...+.. +
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-------~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-------SKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-------CHHHHHHHHHHhccCCcccC
Confidence 44568899999999999999999998221 1111233333 2111 11234444444321 2
Q ss_pred CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHH
Q 003859 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~ee 556 (791)
..-|++||++|.+ .....+.|+..|+. +...+++|.+|+.+..|-+.+++ |+. ++.|.+|+.++
T Consensus 90 ~~KvvII~~~e~m-----------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~~ 153 (299)
T PRK07132 90 QKKILIIKNIEKT-----------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQK 153 (299)
T ss_pred CceEEEEeccccc-----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHHH
Confidence 4569999999877 34567789999995 45567777777788889899988 885 69999999998
Q ss_pred HHHHHHH
Q 003859 557 RAEILDI 563 (791)
Q Consensus 557 r~~IL~~ 563 (791)
....|..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 8877664
No 283
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.7e-05 Score=83.40 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=104.3
Q ss_pred cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-------------------ce
Q 003859 384 LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------KV 444 (791)
Q Consensus 384 ~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~~ 444 (791)
+..+++.|..++.. -+.+..+||+|| +||+++|+++|..+-.... +-
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 34556666666544 145678999996 6899999999988743211 11
Q ss_pred EEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCc
Q 003859 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (791)
Q Consensus 445 ~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~ 520 (791)
.++.+... +.. -....++.+...+.. ....|++||++|.| .....+.||+.|+. +..+
T Consensus 73 D~~~i~p~---~~~--I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE--Pp~~ 134 (290)
T PRK07276 73 DVTVIEPQ---GQV--IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE--PQSE 134 (290)
T ss_pred CeeeecCC---CCc--CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC--CCCC
Confidence 11111110 000 012344554444332 23469999999988 45677889999994 5667
Q ss_pred EEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 521 vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
+++|.+|+.++.|.|.+++ |+. .|.|+. +.+...++|.. .+. +... ..++....| +++....++.
T Consensus 135 t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~~----~g~--~~~~-a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 135 IYIFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLEQ----KGL--LKTQ-AELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred eEEEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHHH----cCC--ChHH-HHHHHHHCC-CHHHHHHHhC
Confidence 8888889889999999999 995 678865 55555555542 222 2222 233444445 5666666653
No 284
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.24 E-value=1.3e-06 Score=93.08 Aligned_cols=140 Identities=22% Similarity=0.329 Sum_probs=77.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHH----H-------hcCCeE
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----Q-------RNQPSI 480 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a----~-------~~~p~V 480 (791)
...++||+||+|||||++++.+-..+.... .....++.+.. .....++.+++.. . .+..+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~--~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv 103 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDK--YLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLV 103 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCC--EEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccc--cceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEE
Confidence 456899999999999999998776553322 12222332221 1122233322211 1 123469
Q ss_pred EEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc--cCCC--------CcEEEeccCCchh---hhhhhhcCCCCccccc
Q 003859 481 IFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--LDSR--------GQVVLIGATNRVD---AIDGALRRPGRFDREF 547 (791)
Q Consensus 481 L~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~--~~~~--------~~vivIattn~~~---~Ld~aL~r~gRf~~~I 547 (791)
+||||+..-.+.. -+ ....+.-|..+|+. +... ..+.+|+|++... .|++.|.| .| .++
T Consensus 104 ~fiDDlN~p~~d~--yg---tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~ 175 (272)
T PF12775_consen 104 LFIDDLNMPQPDK--YG---TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NIL 175 (272)
T ss_dssp EEEETTT-S---T--TS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEE
T ss_pred EEecccCCCCCCC--CC---CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEE
Confidence 9999997543221 11 22233333344432 1111 2577888877532 48888987 67 479
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 003859 548 NFPLPGCEARAEILDIHTRK 567 (791)
Q Consensus 548 ~~~~Pd~eer~~IL~~~l~~ 567 (791)
.++.|+.+....|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999999887765
No 285
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=3.7e-05 Score=86.23 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=108.3
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
...+.++++|.=...-+.+|++++... .....+ -..+-+||+||+||||||+++.||.+++ +.+..+..
T Consensus 75 Ky~P~t~eeLAVHkkKI~eVk~WL~~~---~~~~~~---l~~~iLLltGPsGcGKSTtvkvLskelg-----~~~~Ew~N 143 (634)
T KOG1970|consen 75 KYKPRTLEELAVHKKKISEVKQWLKQV---AEFTPK---LGSRILLLTGPSGCGKSTTVKVLSKELG-----YQLIEWSN 143 (634)
T ss_pred hcCcccHHHHhhhHHhHHHHHHHHHHH---HHhccC---CCceEEEEeCCCCCCchhHHHHHHHhhC-----ceeeeecC
Confidence 335667778877777777887777521 011111 1234689999999999999999999996 44444331
Q ss_pred -------------hhhhhhhHhHHHHHHHHHHHHHH------------hcCCeEEEEeCCCccCCCCCCchhhhhHHHHH
Q 003859 452 -------------ADVLSKWVGEAERQLKLLFEEAQ------------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (791)
Q Consensus 452 -------------~~~~~~~~g~~~~~l~~lf~~a~------------~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~ 506 (791)
..+....+...-.........+. ...+.+|||||+-.++... ....+.
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~~~~f~ 216 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------DSETFR 216 (634)
T ss_pred CccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------hHHHHH
Confidence 11111111111112122222221 1236699999996655321 112222
Q ss_pred HHHHHHhccCCCCcEEEecc-CCchhhhhh------hhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCC------
Q 003859 507 TLLALMDGLDSRGQVVLIGA-TNRVDAIDG------ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS------ 573 (791)
Q Consensus 507 ~Ll~~l~~~~~~~~vivIat-tn~~~~Ld~------aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~------ 573 (791)
.+|.++-.. ..-++|+|.| ++.++..++ .+.-..|+. .|.|.+-...-....|..++........
T Consensus 217 evL~~y~s~-g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 217 EVLRLYVSI-GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHhc-CCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 222222221 1223444333 333332222 111122443 5778877777777777777655433332
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 574 RELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 574 ~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
...++.++..+. +||+.++....+-+
T Consensus 295 ~~~v~~i~~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHHhcC----ccHHHHHhHhhhhc
Confidence 334455666555 48888777665554
No 286
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.21 E-value=9.2e-07 Score=89.92 Aligned_cols=63 Identities=6% Similarity=0.005 Sum_probs=36.1
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCc-----hhHHH--HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNW-----RNFLF--ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~-----~~~~l--~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
+.+|||||||||||+||..++.. ++. .++.+ ..|+...+ +... ...|||||||-.+-...++.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e-~~~~~~~~sg~~i~k~~dl~~il----~~l~--~~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE-LGVNFKITSGPAIEKAGDLAAIL----TNLK--EGDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH-CT--EEEEECCC--SCHHHHHHH----HT----TT-EEEECTCCC--HHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc-cCCCeEeccchhhhhHHHHHHHH----HhcC--CCcEEEEechhhccHHHHHH
Confidence 47999999999999766655554 332 22222 13333333 3222 37799999998877766654
No 287
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.19 E-value=4.5e-06 Score=96.54 Aligned_cols=232 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEec------------hhhhhhhH----------------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKG------------ADVLSKWV---------------- 459 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~------------~~~~~~~~---------------- 459 (791)
|+.+...+||+||||||||+||..++..-... +..+.|+...- .-.+..+.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Q ss_pred ------hHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 460 ------GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 460 ------g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
-.....+..+........+..|+||-+..|....... ......+..|+..+. ...+.+|.++......
T Consensus 97 ~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~--~~~r~~l~~Li~~L~----~~g~TvLLtsh~~~~~ 170 (484)
T TIGR02655 97 QDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV--SVVRREIFRLVARLK----QIGVTTVMTTERIEEY 170 (484)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch--HHHHHHHHHHHHHHH----HCCCEEEEEecCcccc
Q ss_pred hhhh-----cCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 534 DGAL-----RRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 534 d~aL-----~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
...- .. -++.+|.+...-...+..-.-...+.....+....
T Consensus 171 ~~~~~~~~~e~--laDgVI~L~~~~~~~~~~R~l~I~K~Rgs~~~~~~-------------------------------- 216 (484)
T TIGR02655 171 GPIARYGVEEF--VSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGE-------------------------------- 216 (484)
T ss_pred cccccCCceeE--eeeeEEEEEEEecCCEEEEEEEEEECCCCCcCCce--------------------------------
Q ss_pred CCccCCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHH
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTK 688 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~ 688 (791)
-...|+.. -+.-+...............--..+.+|+ +++..
T Consensus 217 --------------~~~~It~~----Gi~v~p~~~~~~~~~~~~~~~~tGi~~lD----~~lgG---------------- 258 (484)
T TIGR02655 217 --------------YPFTITDH----GINIFPLGAMRLTQRSSNVRVSSGVVRLD----EMCGG---------------- 258 (484)
T ss_pred --------------EEEEEcCC----cEEEEecccccccccccccccCCChHhHH----HHhcC----------------
Q ss_pred hhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 689 LCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 689 ~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
++....-+|+.||||||||+++.+.+...+
T Consensus 259 ----------G~~~gs~~li~G~~G~GKt~l~~~f~~~~~ 288 (484)
T TIGR02655 259 ----------GFFKDSIILATGATGTGKTLLVSKFLENAC 288 (484)
T ss_pred ----------CccCCcEEEEECCCCCCHHHHHHHHHHHHH
No 288
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.15 E-value=2.2e-05 Score=95.85 Aligned_cols=133 Identities=25% Similarity=0.311 Sum_probs=87.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh--hhhhhHhH----HH---HHHHHHHHHHHhcCCeEEEEe
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWVGE----AE---RQLKLLFEEAQRNQPSIIFFD 484 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--~~~~~~g~----~~---~~l~~lf~~a~~~~p~VL~ID 484 (791)
..+||.||+.+|||.++..||...+ ..|+.++..+ -+..|+|. .. ..-..++-.|.+.. --|+||
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tg-----hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLD 962 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETG-----HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLD 962 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhC-----ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEee
Confidence 4599999999999999999999986 4566665432 12233332 11 11123333444333 378999
Q ss_pred CCCccCCCCCCchhhhhHHHHHHHHHHHhcc------------CCCCcEEEeccCCchh------hhhhhhcCCCCcccc
Q 003859 485 EIDGLAPVRSSKQEQIHNSIVSTLLALMDGL------------DSRGQVVLIGATNRVD------AIDGALRRPGRFDRE 546 (791)
Q Consensus 485 EiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~------------~~~~~vivIattn~~~------~Ld~aL~r~gRf~~~ 546 (791)
|+. |+ ...++..|-.+++.- .+...+.++||-|.|- -|..|++. ||- .
T Consensus 963 ELN-LA----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E 1028 (4600)
T COG5271 963 ELN-LA----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-E 1028 (4600)
T ss_pred ccc-cC----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-h
Confidence 995 43 345666666666642 1234577888888764 48889988 994 6
Q ss_pred ccCCCCCHHHHHHHHHHHHh
Q 003859 547 FNFPLPGCEARAEILDIHTR 566 (791)
Q Consensus 547 I~~~~Pd~eer~~IL~~~l~ 566 (791)
++|..-..++...||...++
T Consensus 1029 ~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1029 MHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred hhcccCcHHHHHHHHhccCc
Confidence 88888888888888876543
No 289
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.14 E-value=3.6e-07 Score=90.65 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc-CchhHHHHHHHHHH-------------HHHH--hhhhhcCCceEEEEeCchhhc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM-NWRNFLFILLVFQL-------------FFQI--LVPRHQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~-~~~~~~l~~d~~e~-------------~~~~--~~~a~~~~P~ivfldeid~~a 767 (791)
..|||+||+|||||++|++++..++ +...++++.||.++ +... ...+. ..-||||||||...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~--~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAE--EGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHH--HHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeecc--chhhhhhHHHhhcc
Confidence 3699999999999999999999998 55545544444321 1110 01111 13499999999766
Q ss_pred c
Q 003859 768 H 768 (791)
Q Consensus 768 ~ 768 (791)
.
T Consensus 82 ~ 82 (171)
T PF07724_consen 82 P 82 (171)
T ss_dssp H
T ss_pred c
Confidence 6
No 290
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00014 Score=75.05 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=111.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-----hhhhhhHhH------------HHHHHHHHHHHHHhc-
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-----DVLSKWVGE------------AERQLKLLFEEAQRN- 476 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-----~~~~~~~g~------------~~~~l~~lf~~a~~~- 476 (791)
-+.++|+-|+|||+++|++...+... .+..++++.. .+...++.+ .+..-+.+.......
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 47799999999999999777666432 3333444432 222222221 222333444444444
Q ss_pred CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh-hh---hhhhcCCCCccccccCCCC
Q 003859 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD-AI---DGALRRPGRFDREFNFPLP 552 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~-~L---d~aL~r~gRf~~~I~~~~P 552 (791)
.|.++++||++.|... .-..+..|.+.-......-.|++|+=...-. .- -..+.. ||...|++++.
T Consensus 131 r~v~l~vdEah~L~~~--------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P~ 200 (269)
T COG3267 131 RPVVLMVDEAHDLNDS--------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPPL 200 (269)
T ss_pred CCeEEeehhHhhhChh--------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCCc
Confidence 4689999999988531 2223333333333222222355555432211 11 122333 78766899999
Q ss_pred CHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 553 GCEARAEILDIHTRKWKQ---PPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 553 d~eer~~IL~~~l~~~~~---~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
+.++....|++.+++-.. -++.+.+..+..++.| .|.-|.++|..|...|.....
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~ 258 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGE 258 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCC
Confidence 999999999999887432 3456677788888888 689999999999988877554
No 291
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.12 E-value=4.6e-06 Score=92.27 Aligned_cols=103 Identities=23% Similarity=0.401 Sum_probs=61.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCceEEEEEechhhhhhhHhHH------HHHHHHHHHHHHhcCCeEEE
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKGADVLSKWVGEA------ERQLKLLFEEAQRNQPSIIF 482 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~~~~~~~~~~g~~------~~~l~~lf~~a~~~~p~VL~ 482 (791)
..+++|++||||+|+|||+|.-.+...+.. ...+++|. .++....... ..-+..+....... ..||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh-----~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLc 132 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH-----EFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLC 132 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc-----HHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEE
Confidence 357899999999999999999999888754 22344442 2222111111 11122222222222 34999
Q ss_pred EeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 483 FDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 483 IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
|||++.-- -...-++..|+..+- ..++++|+|+|.+
T Consensus 133 fDEF~V~D--------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 133 FDEFQVTD--------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred Eeeeeccc--------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 99997431 113455666666554 4578999999983
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.09 E-value=6.3e-06 Score=79.89 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=48.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh--hhh------------------h--HhHHHHHHHHHHHHH
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV--LSK------------------W--VGEAERQLKLLFEEA 473 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~--~~~------------------~--~g~~~~~l~~lf~~a 473 (791)
++|+||||+|||+++..++..+...+..+.|+....... ... . ..........++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 789999999999999999999876655566554433211 000 0 000111122334455
Q ss_pred HhcCCeEEEEeCCCccCC
Q 003859 474 QRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L~~ 491 (791)
....+.+|+|||+..++.
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 566788999999998764
No 293
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.3e-06 Score=87.93 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=44.1
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcC-------------chhHHHH-----------HHHHHHHHHHhhhhhcCCceEEEE
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMN-------------WRNFLFI-----------LLVFQLFFQILVPRHQRRHWCIYL 760 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~-------------~~~~~l~-----------~d~~e~~~~~~~~a~~~~P~ivfl 760 (791)
=+||+||||||||.|-+++++.+.- .....+- ..|++.+.+++.. +..--+|.|
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d--~~~lVfvLI 256 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED--RGNLVFVLI 256 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 3999999999999999999886421 1111111 1222222222222 335667889
Q ss_pred eCchhhccccccccccc
Q 003859 761 VKLEEQRHQYSIYHSSI 777 (791)
Q Consensus 761 deid~~a~~~~~~~~~~ 777 (791)
||++++|-.|.-.-+..
T Consensus 257 DEVESLa~aR~s~~S~~ 273 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRN 273 (423)
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 99999999885444433
No 294
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.4e-06 Score=92.95 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchhHHH-HHHH---HHH
Q 003859 667 QKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF-ILLV---FQL 742 (791)
Q Consensus 667 ~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l-~~d~---~e~ 742 (791)
+++++-+... ++...-|.++|.. .+.|-|||||||||||++++|+|..+ +..-.+| +..+ .+
T Consensus 211 ~~I~~Dl~~F---~k~k~~YkrvGka---------wKRGYLLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v~~n~d- 276 (457)
T KOG0743|consen 211 ERIIDDLDDF---IKGKDFYKRVGKA---------WKRGYLLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEVKLDSD- 276 (457)
T ss_pred HHHHHHHHHH---HhcchHHHhcCcc---------hhccceeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccccCcHH-
Confidence 4444444442 3445667777653 46799999999999998887777654 2211111 1111 23
Q ss_pred HHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 743 FFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 743 ~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
++.+|..... -+||+|-+||.-+.
T Consensus 277 Lr~LL~~t~~--kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 277 LRHLLLATPN--KSILLIEDIDCSFD 300 (457)
T ss_pred HHHHHHhCCC--CcEEEEeecccccc
Confidence 5555555553 79999999998655
No 295
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=1.7e-06 Score=80.95 Aligned_cols=69 Identities=9% Similarity=-0.136 Sum_probs=48.7
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCch--hHHHH---------H--------------HHHHHHHHHhhhhhcCCceEE
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWR--NFLFI---------L--------------LVFQLFFQILVPRHQRRHWCI 758 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~--~~~l~---------~--------------d~~e~~~~~~~~a~~~~P~iv 758 (791)
..++|+||||||||+++..++..+.... ...+. . .-...+...+..+....|.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3699999999999998888887665532 00000 0 112455567777887778999
Q ss_pred EEeCchhhcccccc
Q 003859 759 YLVKLEEQRHQYSI 772 (791)
Q Consensus 759 fldeid~~a~~~~~ 772 (791)
||||+..+......
T Consensus 83 iiDei~~~~~~~~~ 96 (148)
T smart00382 83 ILDEITSLLDAEQE 96 (148)
T ss_pred EEECCcccCCHHHH
Confidence 99999998876554
No 296
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.06 E-value=7.4e-06 Score=99.97 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=43.6
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC------chhHHHHHHH-----------HHHHHHHhhhhhcCCceEEEEeCchh
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN------WRNFLFILLV-----------FQLFFQILVPRHQRRHWCIYLVKLEE 765 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~------~~~~~l~~d~-----------~e~~~~~~~~a~~~~P~ivfldeid~ 765 (791)
.+.+||+||||||||++|++++..+-. ..+..-..++ ...+.+.|..+....| ||||||||.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk 425 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDK 425 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhh
Confidence 347999999999999888888776411 1100000111 1234456666766566 789999999
Q ss_pred hccccc
Q 003859 766 QRHQYS 771 (791)
Q Consensus 766 ~a~~~~ 771 (791)
+....+
T Consensus 426 ~~~~~~ 431 (775)
T TIGR00763 426 IGSSFR 431 (775)
T ss_pred cCCccC
Confidence 986443
No 297
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=1.7e-05 Score=82.84 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=81.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----------------CceEEEEEechhhhhhhHhHHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-----------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEA 473 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-----------------~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a 473 (791)
.++..+||+||.|+||..+|.++|+.+-... .+-.++.+.... ..- ....++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I----~id~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPI----KKEDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccC----CHHHHHHHHHHH
Confidence 4567899999999999999999998874321 111111111100 000 122233333322
Q ss_pred H----h-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCcccccc
Q 003859 474 Q----R-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548 (791)
Q Consensus 474 ~----~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~ 548 (791)
. . ...-|++|+++|.+ .....+.||..++ .+..++++|.+|+.++.+.+.+++ |+. .+.
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~ 143 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKL-----------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYV 143 (261)
T ss_pred ccCchhcCCCEEEEeccHhhh-----------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eee
Confidence 1 1 23469999999987 4667888999999 467788999999999999999999 985 466
Q ss_pred CCCC
Q 003859 549 FPLP 552 (791)
Q Consensus 549 ~~~P 552 (791)
|+.+
T Consensus 144 ~~~~ 147 (261)
T PRK05818 144 VLSK 147 (261)
T ss_pred cCCh
Confidence 7666
No 298
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.02 E-value=4.8e-06 Score=90.52 Aligned_cols=95 Identities=12% Similarity=-0.056 Sum_probs=55.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchhHH
Q 003859 655 SLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRNFL 734 (791)
Q Consensus 655 ~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~ 734 (791)
+|.++.|.+..+..+..++.... . .....+.+||+||||||||++|.+++..+.......
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~-----------~---------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~ 61 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-----------M---------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKIT 61 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH-----------h---------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 57778888877777777654310 0 001133799999999999988888776542210000
Q ss_pred HH--HHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 735 FI--LLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 735 l~--~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.. ......+...+... ..+.+|||||++.+.....
T Consensus 62 ~~~~~~~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~ 98 (305)
T TIGR00635 62 SGPALEKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVE 98 (305)
T ss_pred ccchhcCchhHHHHHHhc--ccCCEEEEehHhhhCHHHH
Confidence 00 00011122222222 2588999999998776543
No 299
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.01 E-value=3.2e-05 Score=88.54 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=84.8
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh-
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK- 457 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~- 457 (791)
.|-|++++|.-|.-.+.- ....-+...| .+.-.+|||+|.||||||.|.+.+++.+.+. .|..-.++...+.
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yTSGkGsSavGLT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYTSGKGSSAVGLT 503 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eeecCCccchhcce
Confidence 355666666655433321 1111122222 2334689999999999999999999887432 2222222221110
Q ss_pred -hHhHHHHHHHHHHHHHH---hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc---------c--CCCCcEE
Q 003859 458 -WVGEAERQLKLLFEEAQ---RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG---------L--DSRGQVV 522 (791)
Q Consensus 458 -~~g~~~~~l~~lf~~a~---~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~---------~--~~~~~vi 522 (791)
|+..-. ..+++..+.. .....|-+|||||.|- ....+.|+..|+. + .-+.+.-
T Consensus 504 ayVtrd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~-----------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 504 AYVTKDP-DTRQLVLESGALVLSDNGICCIDEFDKMS-----------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred eeEEecC-ccceeeeecCcEEEcCCceEEchhhhhhh-----------HHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 100000 0011111000 0113488999999883 2222334444432 1 1134667
Q ss_pred EeccCCchh-------------hhhhhhcCCCCccccc-cCCCCCHHHHHHHHHH
Q 003859 523 LIGATNRVD-------------AIDGALRRPGRFDREF-NFPLPGCEARAEILDI 563 (791)
Q Consensus 523 vIattn~~~-------------~Ld~aL~r~gRf~~~I-~~~~Pd~eer~~IL~~ 563 (791)
|||++|... .|++.|++ ||+.++ -+..||...=+.|..+
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 899998532 37899999 998764 4577776633334433
No 300
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.01 E-value=3.3e-05 Score=88.43 Aligned_cols=190 Identities=19% Similarity=0.220 Sum_probs=106.3
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~ 459 (791)
.++|.......+...+... ......++|+|.+||||+++|+++...... ...+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~--~~~~~i~~~c~~~~~~~~ 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSAR--SEKPLVTLNCAALNESLL 206 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCC--CCCCeeeeeCCCCCHHHH
Confidence 3566666555555444331 133467999999999999999999876542 246788888876543221
Q ss_pred hHHHHHHHHHHHH---------------HHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-------
Q 003859 460 GEAERQLKLLFEE---------------AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS------- 517 (791)
Q Consensus 460 g~~~~~l~~lf~~---------------a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~------- 517 (791)
.. .+|.. .......+||||||+.|. ..++..|+..++.-.-
T Consensus 207 ~~------~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~ 269 (441)
T PRK10365 207 ES------ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQ 269 (441)
T ss_pred HH------HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCc
Confidence 11 11110 011235689999999884 3455667777663210
Q ss_pred --CCcEEEeccCCchhhhhhhhcCCCCccc-------cccCCCCCHHH----HHHHHHHHHhcC----C---CCCCHHHH
Q 003859 518 --RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEA----RAEILDIHTRKW----K---QPPSRELK 577 (791)
Q Consensus 518 --~~~vivIattn~~~~Ld~aL~r~gRf~~-------~I~~~~Pd~ee----r~~IL~~~l~~~----~---~~~~~~~~ 577 (791)
...+.+|++|+..- . .+...++|.. .+.+..|...+ ...++..++..+ . ..++.+.+
T Consensus 270 ~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 346 (441)
T PRK10365 270 TISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAM 346 (441)
T ss_pred eeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 11355776665521 1 1112233421 34445555443 344555554432 1 23566666
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Q 003859 578 SELAASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 578 ~~LA~~t~G~s~~di~~l~~~A~~~ 602 (791)
..|....=.-+.++|.++++.|+..
T Consensus 347 ~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 347 DLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 6666554334667888888876643
No 301
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.00 E-value=7.5e-06 Score=88.89 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=40.7
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHH------HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF------ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l------~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
-++++|+||||||||++|..++.. ++..+..+ ..++.+.+.+.-......+-.|||||||-.+=..-|
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~-~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ 121 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGT-TNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ 121 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHh-hCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh
Confidence 347999999999999877766663 33221111 123444444422222233479999999976544333
No 302
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=6.8e-06 Score=86.18 Aligned_cols=96 Identities=16% Similarity=0.036 Sum_probs=57.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchh
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRN 732 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~ 732 (791)
+-+++++.|-+..++-++..+.. +--|.+|||||||||||..|.++++.+++-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-------------------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~ 86 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-------------------------RILPHYLFYGPPGTGKTSTALAFARALNCEQL 86 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-------------------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccc
Confidence 34566666666666555555322 12458999999999999888888877776211
Q ss_pred HHHH-H-----HH---------HHHHHHHhhhh-----hcCCc-eEEEEeCchhhccccccc
Q 003859 733 FLFI-L-----LV---------FQLFFQILVPR-----HQRRH-WCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 733 ~~l~-~-----d~---------~e~~~~~~~~a-----~~~~P-~ivfldeid~~a~~~~~~ 773 (791)
+..+ . |. +..|++....- +...| -||+|||.|++-+.-+.+
T Consensus 87 ~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~a 148 (346)
T KOG0989|consen 87 FPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAA 148 (346)
T ss_pred cccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHH
Confidence 1111 1 11 13455422222 12223 699999999987754443
No 303
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.95 E-value=9.5e-06 Score=89.24 Aligned_cols=95 Identities=13% Similarity=-0.050 Sum_probs=55.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC---
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN--- 729 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~--- 729 (791)
+..|.++.|-...++.+..++.... . .-...+.+|||||||||||++|.+++..+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~----------~----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK----------K----------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH----------h----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3467777777766666665543310 0 0011347999999999999888877766422
Q ss_pred -chhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 730 -WRNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 730 -~~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
...+.+. ....+..++... ..++|||||||+.+.....
T Consensus 81 ~~~~~~~~--~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~ 119 (328)
T PRK00080 81 ITSGPALE--KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE 119 (328)
T ss_pred EEeccccc--ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH
Confidence 1111111 011222323322 2589999999999876543
No 304
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.95 E-value=1.5e-05 Score=93.55 Aligned_cols=155 Identities=20% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhh-cCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFAS-YHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~-~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
...|-|.+.+|+.|.-.+... ....... ..++.-.+|||.|.||||||.|.+.+++.+.+ ..|.+..++...+
T Consensus 285 aPsIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr----~vytsgkgss~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR----GVYTSGKGSSAAG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc----eEEEccccccccC
Confidence 345788888888875544221 1111110 01233368999999999999999999988742 3333333322211
Q ss_pred hhHhHHHHHHHH-----HHHHHH---hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-----------CC
Q 003859 457 KWVGEAERQLKL-----LFEEAQ---RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----------DS 517 (791)
Q Consensus 457 ~~~g~~~~~l~~-----lf~~a~---~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-----------~~ 517 (791)
- +...++. +.-.+- ...+.|++|||||.+- ......|...|+.- .-
T Consensus 359 L----TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~-----------~~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 359 L----TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN-----------EEDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred c----eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC-----------hHHHHHHHHHHHhcEeeecccceeeec
Confidence 0 0000000 000100 1124599999999873 33344555666531 11
Q ss_pred CCcEEEeccCCchh-------------hhhhhhcCCCCccccccC-CCCCHH
Q 003859 518 RGQVVLIGATNRVD-------------AIDGALRRPGRFDREFNF-PLPGCE 555 (791)
Q Consensus 518 ~~~vivIattn~~~-------------~Ld~aL~r~gRf~~~I~~-~~Pd~e 555 (791)
+.++-|+||+|... .|++.|++ ||+.++.+ ..|+.+
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~ 473 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEE 473 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCcc
Confidence 23567888988764 37888999 99976644 456554
No 305
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.94 E-value=2.5e-05 Score=78.75 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=47.2
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc--hhHHHHH--------HHH----HHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW--RNFLFIL--------LVF----QLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~--~~~~l~~--------d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
.|.++|.||||||||+-+.++|..++|. +..++-+ |++ ..|++.-..--..+.-||+|||.||...
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh
Confidence 5689999999999999999999999883 4444432 444 4455522222234567999999999755
No 306
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.94 E-value=5.2e-05 Score=78.69 Aligned_cols=42 Identities=36% Similarity=0.496 Sum_probs=35.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|+.....++|+|+||+|||++|..+|..+...+..+.|+...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 566777899999999999999999998887667677776655
No 307
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.94 E-value=2.8e-05 Score=87.54 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=40.0
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCchhHHHH-----------HHHHHHHHHHhhh----hhcCCceEEEEeCchhhcc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI-----------LLVFQLFFQILVP----RHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~-----------~d~~e~~~~~~~~----a~~~~P~ivfldeid~~a~ 768 (791)
.++||+||||||||++|+.++..+ ++.+..+. .++...+..++.. ..+..++||||||||.+..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 479999999999998887777643 32211110 0111122222211 1234689999999999986
Q ss_pred c
Q 003859 769 Q 769 (791)
Q Consensus 769 ~ 769 (791)
.
T Consensus 188 ~ 188 (412)
T PRK05342 188 K 188 (412)
T ss_pred c
Confidence 4
No 308
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.94 E-value=3.6e-05 Score=70.22 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=22.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 416 VLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~ 440 (791)
|+|+||||+|||++|+.||..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999998644
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00018 Score=69.04 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceE
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (791)
....|+++|+||+||||++..||..+...++++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 3456999999999999999999999987754443
No 310
>PLN03025 replication factor C subunit; Provisional
Probab=97.93 E-value=2.7e-05 Score=85.38 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=40.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCchh--HHH--------HHHHHHHHHHHhhhhh----cCCceEEEEeCchhhccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWRN--FLF--------ILLVFQLFFQILVPRH----QRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~~--~~l--------~~d~~e~~~~~~~~a~----~~~P~ivfldeid~~a~~ 769 (791)
|.+||+||||||||++|.+++..+++... ..+ ..++++..-..|.... ...+.||||||+|.+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH
Confidence 47999999999999999888877644210 000 0111111111111111 124789999999998765
Q ss_pred cc
Q 003859 770 YS 771 (791)
Q Consensus 770 ~~ 771 (791)
-+
T Consensus 115 aq 116 (319)
T PLN03025 115 AQ 116 (319)
T ss_pred HH
Confidence 44
No 311
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.91 E-value=3.1e-05 Score=83.96 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=68.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh--hhh------------hHhHHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV--LSK------------WVGEAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~--~~~------------~~g~~~~~l~~lf~~a~ 474 (791)
|++....++|+||||||||+||-.++..+...+..+.|+......- ... .....+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5677788999999999999999998888776665666553322100 000 00112233333333445
Q ss_pred hcCCeEEEEeCCCccCCCCCCc------hhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 475 RNQPSIIFFDEIDGLAPVRSSK------QEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~~~~------~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
...+.+||||-+-+|.+...-. ......+++..++..|..+....++.+|.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678899999999888632100 0112234444555444444345556666553
No 312
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.86 E-value=0.00023 Score=76.96 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=94.6
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh--
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-- 456 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~-- 456 (791)
..+.+.+.++..|...+.. . .-..|..|+|||.+|||||.+++.+-+.+. ...+.+++-++.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~-~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------N-SCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYA 70 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------C-CcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHH
Confidence 4578899999999887633 1 114577889999999999999999998883 4455555433221
Q ss_pred ----hhH---------hHH----HHHH---HHHHHH--HHh--cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 457 ----KWV---------GEA----ERQL---KLLFEE--AQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 457 ----~~~---------g~~----~~~l---~~lf~~--a~~--~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
... |.. ...+ -.+|.. +.. .+..+|+||.+|.|- .....++..|+.+-
T Consensus 71 ~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--------D~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 71 ILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--------DMDAILLQCLFRLY 142 (438)
T ss_pred HHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--------ccchHHHHHHHHHH
Confidence 100 100 0111 122222 111 235688999999885 22445666666554
Q ss_pred hccCCCCcEEEeccCCchh-hhhhhhcCCCC-ccccccCCCCCHHHHHHHHHHHHh
Q 003859 513 DGLDSRGQVVLIGATNRVD-AIDGALRRPGR-FDREFNFPLPGCEARAEILDIHTR 566 (791)
Q Consensus 513 ~~~~~~~~vivIattn~~~-~Ld~aL~r~gR-f~~~I~~~~Pd~eer~~IL~~~l~ 566 (791)
+-+... .+.+|.+...+. .-.. +-|- ...+++||.|+.++...|+..-..
T Consensus 143 el~~~~-~i~iils~~~~e~~y~~---n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 143 ELLNEP-TIVIILSAPSCEKQYLI---NTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred HHhCCC-ceEEEEeccccHHHhhc---ccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 433333 444443333222 1111 1112 235689999999999999876544
No 313
>PHA00729 NTP-binding motif containing protein
Probab=97.86 E-value=0.0001 Score=75.74 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+|+|+|+||||||+||.+||..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 314
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.85 E-value=9.1e-05 Score=73.75 Aligned_cols=50 Identities=32% Similarity=0.461 Sum_probs=34.2
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (791)
++|.+++++.|...+.. . ....+..++|+|++|+|||+|++++...+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A---------QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T---------SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-H---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999887641 1 12456789999999999999999999988766
No 315
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00025 Score=77.25 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
+..-|+||.|.|||||.+.||...-....++.++
T Consensus 291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvL 324 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324 (807)
T ss_pred ceecccCCCCCchHHHHHHHHhhhccCCCCCceE
Confidence 3455889999999999999998875444444444
No 316
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.85 E-value=7.6e-05 Score=77.60 Aligned_cols=126 Identities=21% Similarity=0.281 Sum_probs=68.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~ 492 (791)
..+..++||+|||||.+++.||+.++ ..++.++|...+.- ..+..+|.-+... .+.++|||++.|-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG-----~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALG-----RFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSE- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT-------EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSH-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhC-----CeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhH-
Confidence 45778999999999999999999996 56677777765432 3345555544433 35899999998841
Q ss_pred CCCchhhhhHHH---HHHHHHHHhccC-----------CCCcEEEeccCCch----hhhhhhhcCCCCccccccCCCCCH
Q 003859 493 RSSKQEQIHNSI---VSTLLALMDGLD-----------SRGQVVLIGATNRV----DAIDGALRRPGRFDREFNFPLPGC 554 (791)
Q Consensus 493 ~~~~~~~~~~~v---~~~Ll~~l~~~~-----------~~~~vivIattn~~----~~Ld~aL~r~gRf~~~I~~~~Pd~ 554 (791)
.....+ +..+...+..-. -+..+-++.|.|.. ..||..|+. .| +.|.+-.||.
T Consensus 99 ------~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 99 ------EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDL 169 (231)
T ss_dssp ------HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--H
T ss_pred ------HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCH
Confidence 111222 222222222110 01123344455532 468888876 55 5788888988
Q ss_pred HHHHHH
Q 003859 555 EARAEI 560 (791)
Q Consensus 555 eer~~I 560 (791)
....++
T Consensus 170 ~~I~ei 175 (231)
T PF12774_consen 170 SLIAEI 175 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765444
No 317
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.84 E-value=1.9e-05 Score=88.54 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=38.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHHHH-----------HHHHHHHHHHhhh----hhcCCceEEEEeCchhhccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI-----------LLVFQLFFQILVP----RHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~-----------~d~~e~~~~~~~~----a~~~~P~ivfldeid~~a~~ 769 (791)
.|||+||||||||++|++++..+ ++.+..+. .++...+..++.. ..+..|+||||||||.++..
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l-~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhc-CCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 79999999999998888887654 22111110 0111112221111 12345889999999988873
No 318
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.001 Score=73.33 Aligned_cols=176 Identities=20% Similarity=0.187 Sum_probs=99.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----hhhhHh----H--------------------H
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKWVG----E--------------------A 462 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~-----~~~~~g----~--------------------~ 462 (791)
++..+.|+||..+|||+|...+.+.+...++.+.++.+....- ...+.. . .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 4567999999999999999999999987777777665554210 011000 0 1
Q ss_pred HHHHHHHHHHH---HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC---CCcEEEeccC-Cchhhhhh
Q 003859 463 ERQLKLLFEEA---QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---RGQVVLIGAT-NRVDAIDG 535 (791)
Q Consensus 463 ~~~l~~lf~~a---~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---~~~vivIatt-n~~~~Ld~ 535 (791)
.......|... ....|-||+|||||.++... .....++..|-.+...-.. -.++.+|++. +.......
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 11223334331 12468899999999998421 1223344444444332111 1223333222 22222211
Q ss_pred hhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 536 ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 536 aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
.-.+|-.+...|.++..+.++...+++.+- ...+...++.|-..|.|. |-=+..+|.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~~~~l~~~tgGh-P~Lv~~~~~ 241 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQLEQLMDWTGGH-PYLVQKACY 241 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 123444456678888889999888776653 445555678888888885 344444444
No 319
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.82 E-value=6.5e-05 Score=81.58 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=67.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh---hhh-----------hHhHHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV---LSK-----------WVGEAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~---~~~-----------~~g~~~~~l~~lf~~a~ 474 (791)
|++...-++|+||||||||+||-.++..+...+..+.|+.....-- ... .....+..+..+...+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4677778999999999999999999888776665566554322100 000 00112223333333345
Q ss_pred hcCCeEEEEeCCCccCCCCC-Cch---h--hhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 475 RNQPSIIFFDEIDGLAPVRS-SKQ---E--QIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~~-~~~---~--~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
...+.+|+||-+-+|++... ... . ....+.+..++..|..+....++.+|.+.
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56788999999999886321 110 0 11223344444444443334555665543
No 320
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.81 E-value=0.00057 Score=76.03 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=48.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH-HhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACA-ASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~-l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
....++++.||+|||||+|+.+|+.. +...+ ..++.+.++.. ... ..+.. -....+|+|||+-.+
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-----~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG-----GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-----CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCC
Confidence 45578999999999999999999887 33333 11222333322 111 11111 233569999999875
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHh
Q 003859 490 APVRSSKQEQIHNSIVSTLLALMD 513 (791)
Q Consensus 490 ~~~~~~~~~~~~~~v~~~Ll~~l~ 513 (791)
.-. ....++..|...|+
T Consensus 273 p~~-------~~~~~v~imK~yMe 289 (449)
T TIGR02688 273 KFA-------KPKELIGILKNYME 289 (449)
T ss_pred cCC-------chHHHHHHHHHHHH
Confidence 421 12345555666555
No 321
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.80 E-value=0.00012 Score=76.39 Aligned_cols=42 Identities=31% Similarity=0.469 Sum_probs=34.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|++.+..++|+|+||||||+++.+++......+..+.|+...
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 677888999999999999999999987765566677776654
No 322
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.78 E-value=0.00012 Score=73.15 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=29.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
+||+||||||||+|+..++......+..+.|+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 79999999999999999998877777777777653
No 323
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.75 E-value=0.0001 Score=78.64 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=118.9
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.......|+.|++.....+.+.+.... +. ..-..+||.|.+||||-++|++...... -...+|+.++
T Consensus 196 ~~~~~~~F~~~v~~S~~mk~~v~qA~k-------~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~--R~~~pFlalN 262 (511)
T COG3283 196 AAQDVSGFEQIVAVSPKMKHVVEQAQK-------LA----MLDAPLLITGETGTGKDLLAKACHLASP--RHSKPFLALN 262 (511)
T ss_pred ccccccchHHHhhccHHHHHHHHHHHH-------hh----ccCCCeEEecCCCchHHHHHHHHhhcCc--ccCCCeeEee
Confidence 334566788888887766666543322 11 1123499999999999999998865543 3467899999
Q ss_pred chhhhhh-----hHhHHH--HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC------
Q 003859 451 GADVLSK-----WVGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS------ 517 (791)
Q Consensus 451 ~~~~~~~-----~~g~~~--~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~------ 517 (791)
|+.+-.. .+|... .-...+|+.|..+ .||||||-.+ +..++..|+..+..-.-
T Consensus 263 CA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee 328 (511)
T COG3283 263 CASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGED 328 (511)
T ss_pred cCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCc
Confidence 9766543 222222 2334577777655 8999999655 56788888888764211
Q ss_pred ---CCcEEEeccCCch--hhhhhhhcCCC---CccccccCCCCCHHHH----HHHH----HHHHhcCC---CCCCHHHHH
Q 003859 518 ---RGQVVLIGATNRV--DAIDGALRRPG---RFDREFNFPLPGCEAR----AEIL----DIHTRKWK---QPPSRELKS 578 (791)
Q Consensus 518 ---~~~vivIattn~~--~~Ld~aL~r~g---Rf~~~I~~~~Pd~eer----~~IL----~~~l~~~~---~~~~~~~~~ 578 (791)
.-.|-||+||..+ +.+...-.|.. |+ .++.+..|...+| .-+. ..++...+ ..++.+++.
T Consensus 329 ~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~ 407 (511)
T COG3283 329 HEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT 407 (511)
T ss_pred ceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 1257889988653 22222222111 22 1334444433322 2222 23333332 345666666
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 579 ELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 579 ~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|...-=--+.+++.+++-+|+...
T Consensus 408 ~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 408 VLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHh
Confidence 6655433335678888877776544
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.0006 Score=75.28 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh--hhhhhHh--
Q 003859 385 SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWVG-- 460 (791)
Q Consensus 385 e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--~~~~~~g-- 460 (791)
..++..+.+.+...+..+..+ ...+..|+|+||+|+||||++..||..+...+..+-++..+... .+..+..
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 455555655554433322211 13356899999999999999999999998777777777765432 1111111
Q ss_pred ----------HHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 461 ----------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 461 ----------~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
.....+...+..+.. ....+||||-.-... .....+..|...+........++|+.+|..
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~---------kd~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNY---------RASETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccC---------cCHHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 122334444444443 234689999774332 123345556666654433334455555444
Q ss_pred hhh
Q 003859 530 VDA 532 (791)
Q Consensus 530 ~~~ 532 (791)
...
T Consensus 364 ~~d 366 (436)
T PRK11889 364 SKD 366 (436)
T ss_pred hHH
Confidence 333
No 325
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.72 E-value=0.0019 Score=70.61 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCC---------C------
Q 003859 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRP---------G------ 541 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~---------g------ 541 (791)
.+.||||||+|.+-+ ..+..++..+..+....++++|.+.+.- .|..++... +
T Consensus 172 ~~iViiIDdLDR~~~-----------~~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP-----------EEIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred ceEEEEEcchhcCCc-----------HHHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHHh
Confidence 467999999999853 2233444555554455778888777642 222222110 0
Q ss_pred CccccccCCCCCHHHHHHHHHHHHhc
Q 003859 542 RFDREFNFPLPGCEARAEILDIHTRK 567 (791)
Q Consensus 542 Rf~~~I~~~~Pd~eer~~IL~~~l~~ 567 (791)
.|+..+.+|.|+..+...++...+..
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 46777899999999988888877654
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.72 E-value=0.0002 Score=66.57 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=47.6
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
.|.|+.-+.+.|..+|...+..+ .-..|..+-|+|+||||||++++.||+.+...+....|+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 58999999999988887754332 234456677999999999999999999987776544444
No 327
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=9e-05 Score=83.09 Aligned_cols=59 Identities=7% Similarity=-0.178 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 655 SLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 655 ~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.|.+|.|.+..++.+..++.... .+. .. .+.+.+.++||+||||||||++|..+++.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~---~~~---~~---------~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAAR---ADV---AA---------AGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcc---ccc---cc---------cCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 58888898888888877766521 000 00 1112234799999999999988888877653
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.72 E-value=0.00064 Score=77.11 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=66.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----hhhhH--------h-----HHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKWV--------G-----EAERQLKLLFEE 472 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~-----~~~~~--------g-----~~~~~l~~lf~~ 472 (791)
..|..++|+|++|+||||+|..||..+...++.+.++.+++... +..+. + .....+...+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 35778999999999999999999999988777787777665321 11110 0 111223344444
Q ss_pred HHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhh
Q 003859 473 AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID 534 (791)
Q Consensus 473 a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld 534 (791)
+... .||+||..-.+. ....++..|..+.........++|+-++...+.++
T Consensus 173 ~~~~--DvVIIDTAGr~~---------~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~ 223 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHA---------LEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223 (437)
T ss_pred hhcC--CEEEEECCCccc---------chHHHHHHHHHHHHHhcccceeEEEeccccHHHHH
Confidence 4333 699999985442 12344444444433333444455555554444443
No 329
>PRK06893 DNA replication initiation factor; Validated
Probab=97.71 E-value=3.7e-05 Score=80.11 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=38.3
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc----hhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW----RNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~----~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
.|.++||||||||||+|+.+++..+... .+..+ .........++.... +..+|+||||+.+..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~--~~dlLilDDi~~~~~ 105 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-SKSQYFSPAVLENLE--QQDLVCLDDLQAVIG 105 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-HHhhhhhHHHHhhcc--cCCEEEEeChhhhcC
Confidence 3568999999999999998888765321 11111 111111122222232 468999999998753
No 330
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.71 E-value=6.8e-05 Score=85.13 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=40.3
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcC----chhHHH-HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMN----WRNFLF-ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~----~~~~~l-~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+.+||+||||||||++|..++...-. +..... ..++.+.+..+..........||||||++.+....+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q 109 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQ 109 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHH
Confidence 47999999999999888887764311 000000 112223333322222233689999999998865433
No 331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=8.1e-05 Score=83.59 Aligned_cols=65 Identities=8% Similarity=0.147 Sum_probs=41.3
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHH----------H-HHHHH--------------HHHHHHhhhhhc--CCc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFL----------F-ILLVF--------------QLFFQILVPRHQ--RRH 755 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~----------l-~~d~~--------------e~~~~~~~~a~~--~~P 755 (791)
...++|+||||||||++|++++..+.+...+. . ..+++ -.|.+++.+|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 34799999999999998888877654321100 0 11211 134444455553 358
Q ss_pred eEEEEeCchhhc
Q 003859 756 WCIYLVKLEEQR 767 (791)
Q Consensus 756 ~ivfldeid~~a 767 (791)
|+||||||+.--
T Consensus 274 ~vliIDEINRan 285 (459)
T PRK11331 274 YVFIIDEINRAN 285 (459)
T ss_pred cEEEEehhhccC
Confidence 999999998744
No 332
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.70 E-value=8e-05 Score=75.69 Aligned_cols=104 Identities=26% Similarity=0.381 Sum_probs=56.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh--hhhhHhHHHHHHHHHHHHHH---------hcCCeEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV--LSKWVGEAERQLKLLFEEAQ---------RNQPSIIF 482 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~--~~~~~g~~~~~l~~lf~~a~---------~~~p~VL~ 482 (791)
+.++|.||||||||++++.++..+...+..+.++....... +....+.....+..++.... .....|||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 46888999999999999999998877765555543322111 11111111111222221111 12246999
Q ss_pred EeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 483 FDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 483 IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
|||+-.+ ....+..|+..+.. ...++++++=.+..
T Consensus 99 VDEasmv-----------~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 99 VDEASMV-----------DSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp ESSGGG------------BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred Eeccccc-----------CHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 9999655 34555666665552 34578888877664
No 333
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.70 E-value=0.0003 Score=73.34 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=51.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec--hhhhhhh--H-------------------------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG--ADVLSKW--V------------------------- 459 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~--~~~~~~~--~------------------------- 459 (791)
|++....++|+|+||||||+++..++..+...+..+.|+.... .+++... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 4566778999999999999998776666645565665554321 1111110 0
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 460 g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
......+..++..+....|.+|+||++-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0112344445555555578899999998664
No 334
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.70 E-value=0.00055 Score=69.51 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=66.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh-----hhhH---h----------HHHHHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-----SKWV---G----------EAERQLKLLFEEAQ 474 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~-----~~~~---g----------~~~~~l~~lf~~a~ 474 (791)
|+.++|+||+|+||||++-.||..+...+..+.++..+..... ..|. + .....+...+....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4679999999999999999999999877888888887753221 1111 1 12233444555555
Q ss_pred hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhh
Q 003859 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID 534 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld 534 (791)
...-.+||||=.-... .....+..|..+++.......++|+.++...+.+.
T Consensus 81 ~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 5445699999864321 12333444444444433344456666665555555
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00071 Score=75.59 Aligned_cols=116 Identities=15% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhh----cCCceEEEEEechhhhh-----hhH---------hHHHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASK----AGQKVSFYMRKGADVLS-----KWV---------GEAERQLKLLFEEA 473 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~----~~~~~~~~~i~~~~~~~-----~~~---------g~~~~~l~~lf~~a 473 (791)
.+..++|+||+|+||||++..||..+.. .+..+.++.+++..... .|. ......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4568999999999999999999988753 35678888777632211 110 01112233333332
Q ss_pred HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCC-CcEEEeccCCchhhhhhhhc
Q 003859 474 QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR-GQVVLIGATNRVDAIDGALR 538 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~-~~vivIattn~~~~Ld~aL~ 538 (791)
....+||||.+..+.. ....+..+..+++..... ..++|+.+|.....+...+.
T Consensus 253 --~~~DlVLIDTaGr~~~---------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3457999999976531 111244555555544333 45677777777666665544
No 336
>PRK14974 cell division protein FtsY; Provisional
Probab=97.69 E-value=0.00061 Score=74.69 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.|..++|+||+|+||||++..||..+...+..+.++..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 467899999999999999999999987776666665444
No 337
>PRK08181 transposase; Validated
Probab=97.68 E-value=0.00054 Score=72.93 Aligned_cols=63 Identities=13% Similarity=-0.008 Sum_probs=37.4
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCch-------hHHHHHHHHHH-----HHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWR-------NFLFILLVFQL-----FFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~-------~~~l~~d~~e~-----~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
.+++|+||||||||+|+.+++..+.... ...+...+... +.+.+..-. .+-+|+|||+.....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC
Confidence 3799999999999998888876543221 11222221110 112222222 478999999976543
No 338
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.68 E-value=5.3e-05 Score=91.66 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=119.4
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccC-ChhHhhhcCCCCC-c-eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLL-YPDFFASYHITPP-R-GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~-~~~~~~~~g~~~~-~-~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
+.....+.|.......+...+...-. .+..|...+.... . .+|++||||+|||+.+.++|.+++ ..++..+.
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g-----~~v~E~Na 390 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG-----FKVVEKNA 390 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-----cceeecCc
Confidence 33445566666655566665544211 1112221111111 1 369999999999999999999996 45666665
Q ss_pred hhhhhhh-----HhH--HHHHHHHHH---HHHH--hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCC
Q 003859 452 ADVLSKW-----VGE--AERQLKLLF---EEAQ--RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRG 519 (791)
Q Consensus 452 ~~~~~~~-----~g~--~~~~l~~lf---~~a~--~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~ 519 (791)
...-+.+ ++. ....+...| .... ...-.||++||+|.++. . .+..+..+..++. ..
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~----ks 458 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK----KS 458 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH----hc
Confidence 5433322 222 112222233 0000 11123999999998874 1 2223333333333 23
Q ss_pred cEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 003859 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (791)
Q Consensus 520 ~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A 599 (791)
.+-||+++|........... +.+..|+|+.|+...+..-+..++......++...++.+...+ ++||++++..-
T Consensus 459 ~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~l 532 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQL 532 (871)
T ss_pred cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHH
Confidence 34556666664443332222 4445799999999999999998888888888888888888877 55777776654
Q ss_pred HHH
Q 003859 600 AIR 602 (791)
Q Consensus 600 ~~~ 602 (791)
.+.
T Consensus 533 q~~ 535 (871)
T KOG1968|consen 533 QFW 535 (871)
T ss_pred hhh
Confidence 444
No 339
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00019 Score=71.37 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=44.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh------h----hhhHhHHHHHHHHHHHHHHhcCCeEEEEeC
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV------L----SKWVGEAERQLKLLFEEAQRNQPSIIFFDE 485 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~------~----~~~~g~~~~~l~~lf~~a~~~~p~VL~IDE 485 (791)
|+|+|+||+|||++|+.||+.|....+.+..+.-+.... + ..|.....+....++..|.. .-+|+.|+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk--n~~VIvDd 81 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK--NYLVIVDD 81 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc--ceEEEEec
Confidence 899999999999999999999988776665443321111 1 12222222222234444444 24888898
Q ss_pred CCcc
Q 003859 486 IDGL 489 (791)
Q Consensus 486 iD~L 489 (791)
...+
T Consensus 82 tNYy 85 (261)
T COG4088 82 TNYY 85 (261)
T ss_pred ccHH
Confidence 8644
No 340
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=3.6e-05 Score=72.63 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=39.0
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCchhHHH-------HHHH--H--HH---HHHHhhhhhcCCceEEEEeCchhh
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF-------ILLV--F--QL---FFQILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l-------~~d~--~--e~---~~~~~~~a~~~~P~ivfldeid~~ 766 (791)
..++++||||||||++++.++..+.......+ .... . .. +...+.......+++|+|||++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 37999999999999988888877632111111 1100 0 00 112223444557999999999965
No 341
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.67 E-value=1.3e-05 Score=88.14 Aligned_cols=163 Identities=23% Similarity=0.256 Sum_probs=83.2
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV----- 454 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~----- 454 (791)
.|.|.+.+|..|.-.+........ -.....+...+|||+|.||+|||.|.+.+++... ...++...+...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p----r~v~~~g~~~s~~gLta 99 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP----RSVYTSGKGSSAAGLTA 99 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S----SEEEEECCGSTCCCCCE
T ss_pred cCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCC----ceEEECCCCcccCCccc
Confidence 578888887776332221100000 0000123446899999999999999998876653 222322222110
Q ss_pred -------hhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc----CC------
Q 003859 455 -------LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL----DS------ 517 (791)
Q Consensus 455 -------~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~----~~------ 517 (791)
.+.|.-+. ..+-.| ...|++|||+|.+- ......|+..|+.- ..
T Consensus 100 ~~~~d~~~~~~~lea-----Galvla---d~GiccIDe~dk~~-----------~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 100 SVSRDPVTGEWVLEA-----GALVLA---DGGICCIDEFDKMK-----------EDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp EECCCGGTSSECEEE------HHHHC---TTSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred eeccccccceeEEeC-----Cchhcc---cCceeeeccccccc-----------chHHHHHHHHHHcCeeccchhhhccc
Confidence 11111111 112222 23499999999873 34566788888751 11
Q ss_pred -CCcEEEeccCCchh-------------hhhhhhcCCCCccccccC-CCCCHHHHHHHHHHHHhcC
Q 003859 518 -RGQVVLIGATNRVD-------------AIDGALRRPGRFDREFNF-PLPGCEARAEILDIHTRKW 568 (791)
Q Consensus 518 -~~~vivIattn~~~-------------~Ld~aL~r~gRf~~~I~~-~~Pd~eer~~IL~~~l~~~ 568 (791)
..++.|+|++|... .+++.|++ ||+.++.+ ..|+.+.=..|.++.+...
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 23568889988754 37888998 99987654 6677766666666666553
No 342
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.67 E-value=0.00065 Score=77.57 Aligned_cols=233 Identities=18% Similarity=0.130 Sum_probs=125.7
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~ 457 (791)
|..|-|.+.+|.-|.-.+.--..... -....++.-.+|||+|.||+||+-+.++++..+.+. .|+.-+.+...+-
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a-~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~----vYtsGkaSSaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSA-GEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS----VYTSGKASSAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccC-CCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc----eEecCcccccccc
Confidence 55678888888877554432111100 022334445689999999999999999999877432 2222111111000
Q ss_pred ---hH--hHHHHHHH--HHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----------CCC
Q 003859 458 ---WV--GEAERQLK--LLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRG 519 (791)
Q Consensus 458 ---~~--g~~~~~l~--~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----------~~~ 519 (791)
.+ +++....- ..+-.| ...|-+|||||.+-- .-...++..|+.-. -+.
T Consensus 419 TaaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKMd~-----------~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKMDV-----------KDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEc---cCceEEechhcccCh-----------HhHHHHHHHHHhheehheecceEEeecc
Confidence 00 00000000 000111 124889999998842 12234555665311 123
Q ss_pred cEEEeccCCchh-------------hhhhhhcCCCCccccc-cCCCCCHHHHHHHHHHHHhc------------------
Q 003859 520 QVVLIGATNRVD-------------AIDGALRRPGRFDREF-NFPLPGCEARAEILDIHTRK------------------ 567 (791)
Q Consensus 520 ~vivIattn~~~-------------~Ld~aL~r~gRf~~~I-~~~~Pd~eer~~IL~~~l~~------------------ 567 (791)
+.-||||+|... .+.++|++ ||+..+ -+..|++..=..|-++++..
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~ 562 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQ 562 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHH
Confidence 456788888753 26788888 998653 55777776555554444322
Q ss_pred ----------CCCCCCHHHHHHHHHH---------------ccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccc
Q 003859 568 ----------WKQPPSRELKSELAAS---------------CVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDV 622 (791)
Q Consensus 568 ----------~~~~~~~~~~~~LA~~---------------t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~ 622 (791)
+...++....+.|... +.+.|.++|+.|++-+-.+|-..-
T Consensus 563 vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~--------------- 627 (764)
T KOG0480|consen 563 VRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVEC--------------- 627 (764)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhh---------------
Confidence 1222222222222211 225677888888775554443322
Q ss_pred cccceeHHHHHHHhcccccccccCc
Q 003859 623 DSVTVEKYHFIEAMSTITPAAHRGA 647 (791)
Q Consensus 623 ~~~~lt~~df~~Al~~~~p~~~r~~ 647 (791)
.-.+|.+|...|..-++.+..+-.
T Consensus 628 -~devt~~~v~ea~eLlk~Siv~ve 651 (764)
T KOG0480|consen 628 -RDEVTKEDVEEAVELLKKSIVRVE 651 (764)
T ss_pred -hhhccHHHHHHHHHHHHhhheeec
Confidence 124899999999887776655443
No 343
>PHA02624 large T antigen; Provisional
Probab=97.66 E-value=0.00016 Score=83.23 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=70.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
|++..+.+||+||||||||+++.+|++.++ | ..+.++++.-... |.........+++||++-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~--G---~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~ 489 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCG--G---KSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKG 489 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcC--C---eEEEeeCCcchhH------------HHhhhhhhceEEEeeeccc
Confidence 456667999999999999999999999994 1 2233443321111 1111111224889999853
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHhccC-------CCCcE-----EEeccCCchhhhhhhhcCCCCccccccCCC
Q 003859 489 LAPVRSSKQEQIHNSIVSTLLALMDGLD-------SRGQV-----VLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (791)
Q Consensus 489 L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------~~~~v-----ivIattn~~~~Ld~aL~r~gRf~~~I~~~~ 551 (791)
-+.....-..+..-.-+..|-+.|+|.- ..+++ .+|.|+|. ..||..|.- ||..+|.|..
T Consensus 490 ~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 490 QPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 3321100000011122345667777641 11111 34557775 578888887 9988888864
No 344
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00011 Score=79.42 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=38.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHHHH--------HHHHHHHHHHhhhhh-cCCceEEEEeCchhhcccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI--------LLVFQLFFQILVPRH-QRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~--------~d~~e~~~~~~~~a~-~~~P~ivfldeid~~a~~~ 770 (791)
.||||||||||||+.|+ -++.-.++-+.++. .+-+-.+-++|.=+. .++--+|||||.|...--+
T Consensus 386 NilfyGPPGTGKTm~Ar-elAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFAR-ELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred heeeeCCCCCCchHHHH-HHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 69999999999995444 44444444333332 111222233333332 3358899999999876543
No 345
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.65 E-value=0.00027 Score=72.90 Aligned_cols=41 Identities=37% Similarity=0.514 Sum_probs=33.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
|+.....++|+|+||||||++|..+|..+...+..+.|+..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56777789999999999999999999988766666666644
No 346
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.64 E-value=6.5e-05 Score=80.70 Aligned_cols=100 Identities=23% Similarity=0.398 Sum_probs=57.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcC-CceEEEEEechhhhhh-------hHhHHHHHHHHHHHHHHhcCCeEEE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-QKVSFYMRKGADVLSK-------WVGEAERQLKLLFEEAQRNQPSIIF 482 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-~~~~~~~i~~~~~~~~-------~~g~~~~~l~~lf~~a~~~~p~VL~ 482 (791)
.+++|++|||+-|+|||+|.-.+...+.... ..++|. .++.. ..|+. .-+..+-.... ....||+
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh-----~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLC 135 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFH-----RFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLC 135 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHH-----HHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEE
Confidence 4679999999999999999999988874322 334432 22211 11111 11111111111 2234999
Q ss_pred EeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 483 FDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 483 IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
|||++.= .-...-++..|+..|= ..+|++++|+|.
T Consensus 136 fDEF~Vt--------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 136 FDEFEVT--------DIADAMILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred eeeeeec--------ChHHHHHHHHHHHHHH----HCCcEEEEeCCC
Confidence 9999632 1112345555555444 347899999987
No 347
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00016 Score=82.17 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=36.7
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+-.|.++.|-+..+..+..++... +.+..+||+||||||||++|..++..+.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------------------ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------------------KIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457788888776666666654331 0122589999999999988887777643
No 348
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.62 E-value=6.5e-05 Score=82.65 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.4
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
|.+||+||||||||++|.+++..+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999998888777654
No 349
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.62 E-value=0.00012 Score=81.05 Aligned_cols=210 Identities=19% Similarity=0.212 Sum_probs=112.3
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~ 459 (791)
.|-|.+++|+.|.-++.-... ...-..+.++...+|+|.|.||+.|+.|.+.|.+...+ ..|..-.+++-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd-~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR----gvYTTGrGSSGV---- 413 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVD-KSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR----GVYTTGRGSSGV---- 413 (721)
T ss_pred hhccchHHHHHHHHHhhCCCC-CCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc----cceecCCCCCcc----
Confidence 588999999999776644211 11112222344568999999999999999999877642 233332332221
Q ss_pred hHHHHHHHHH-----------HHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHH-HHHH-hccC--CCCcEEEe
Q 003859 460 GEAERQLKLL-----------FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL-LALM-DGLD--SRGQVVLI 524 (791)
Q Consensus 460 g~~~~~l~~l-----------f~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~L-l~~l-~~~~--~~~~vivI 524 (791)
|-+...++.- +-.|. ..|-+|||||.+....-.. .+ .++.+- +.+- .++. -+.++.|+
T Consensus 414 GLTAAVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~DRtA---IH-EVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 414 GLTAAVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDESDRTA---IH-EVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred ccchhhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhhhhHH---HH-HHHHhhhhhhhhhccccchhhhHHhh
Confidence 2121111110 00111 2388999999986321110 01 111111 1110 1111 13467788
Q ss_pred ccCCchh-------------hhhhhhcCCCCcccccc-CCCCCHHHHHHHHHHHH----hcCCCC-----CCHHHHHH--
Q 003859 525 GATNRVD-------------AIDGALRRPGRFDREFN-FPLPGCEARAEILDIHT----RKWKQP-----PSRELKSE-- 579 (791)
Q Consensus 525 attn~~~-------------~Ld~aL~r~gRf~~~I~-~~~Pd~eer~~IL~~~l----~~~~~~-----~~~~~~~~-- 579 (791)
|++|..+ .||.||++ ||+..+- ...|+.+.=..+.++++ ...... ++...+..
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI 564 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYI 564 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHH
Confidence 8888643 38999999 9986654 36687766555555433 111111 23333322
Q ss_pred -HHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 580 -LAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 580 -LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
+|+...-+.+.++..-+..|.....+..
T Consensus 565 ~~ak~~~P~vp~~l~dyi~~AYv~~Rrea 593 (721)
T KOG0482|consen 565 SLAKRKNPVVPEALADYITGAYVELRREA 593 (721)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344455566677666666665555443
No 350
>PRK04195 replication factor C large subunit; Provisional
Probab=97.61 E-value=7.3e-05 Score=86.58 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=56.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCch
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWR 731 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~ 731 (791)
.+.++.++.|-+..+..+..|+.... . + ...+.+||+||||||||++|.+++..+ ++.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~------------------~--g-~~~~~lLL~GppG~GKTtla~ala~el-~~~ 66 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWL------------------K--G-KPKKALLLYGPPGVGKTSLAHALANDY-GWE 66 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHh------------------c--C-CCCCeEEEECCCCCCHHHHHHHHHHHc-CCC
Confidence 34567788888888888888865521 0 1 114489999999999998777776654 321
Q ss_pred hHHH-----H-HHHH-HHHHHHhhh-hhc-CCceEEEEeCchhhcc
Q 003859 732 NFLF-----I-LLVF-QLFFQILVP-RHQ-RRHWCIYLVKLEEQRH 768 (791)
Q Consensus 732 ~~~l-----~-~d~~-e~~~~~~~~-a~~-~~P~ivfldeid~~a~ 768 (791)
...+ + .+.+ ..+...... ... ..+.||||||+|.+.+
T Consensus 67 ~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 67 VIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred EEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 1111 1 1111 111111100 011 2588999999998865
No 351
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.60 E-value=0.00047 Score=70.26 Aligned_cols=114 Identities=21% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH--hhcCCceE-----------EEEEechhhhhh---hHhHHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA--SKAGQKVS-----------FYMRKGADVLSK---WVGEAERQLKLLFEEA 473 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l--~~~~~~~~-----------~~~i~~~~~~~~---~~g~~~~~l~~lf~~a 473 (791)
+.....++|+||+|+|||||++.|+... ...+..++ |..+...+-+.. ........+..++..+
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 3444678999999999999999998655 22232221 122211111110 1111224566666666
Q ss_pred HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 474 QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
....|.+|+|||.-.-+ +......+...++..+. .. ...+|.+|..++.+
T Consensus 102 ~~~~p~llllDEp~~gl------D~~~~~~l~~~ll~~l~---~~-~~tiiivTH~~~~~ 151 (199)
T cd03283 102 KKGEPVLFLLDEIFKGT------NSRERQAASAAVLKFLK---NK-NTIGIISTHDLELA 151 (199)
T ss_pred cCCCCeEEEEecccCCC------CHHHHHHHHHHHHHHHH---HC-CCEEEEEcCcHHHH
Confidence 54578999999974221 01111223333444443 12 34666677776554
No 352
>PRK06526 transposase; Provisional
Probab=97.59 E-value=9.3e-05 Score=78.20 Aligned_cols=63 Identities=13% Similarity=-0.047 Sum_probs=38.1
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHHH---HHHHHHH---------HHHhhhhhcCCceEEEEeCchhhc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI---LLVFQLF---------FQILVPRHQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~---~d~~e~~---------~~~~~~a~~~~P~ivfldeid~~a 767 (791)
..+++|+||||||||+||.+++..+.......+. .++++.+ ...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4489999999999999988887665432211211 1222111 1222222 247899999998654
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.59 E-value=0.0006 Score=72.41 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=35.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
|+.....+||+||||||||++|..+|......+..+.|+....
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 5677788999999999999999999887666677777777653
No 354
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.59 E-value=0.00075 Score=82.67 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=91.2
Q ss_pred CCCCceEEEEcCCCChHHHH-HHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----------c--
Q 003859 410 ITPPRGVLLCGPPGTGKTLI-ARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----------N-- 476 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~l-aralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----------~-- 476 (791)
+...+++++|||||+|||+| +-+|-.++- ..+.++..+....... +-.+++.-.. .
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~---~ev~~~Nfs~~t~T~s--------~ls~Ler~t~yy~~tg~~~l~PK 1559 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELI---TEVKYFNFSTCTMTPS--------KLSVLERETEYYPNTGVVRLYPK 1559 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhh---eeeeEEeeccccCCHH--------HHHHHHhhceeeccCCeEEEccC
Confidence 46678999999999999995 445554442 2333333322211110 1111111100 0
Q ss_pred ---CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHH------Hh-ccCCCCcEEEeccCCchhhh-----hhhhcCCC
Q 003859 477 ---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL------MD-GLDSRGQVVLIGATNRVDAI-----DGALRRPG 541 (791)
Q Consensus 477 ---~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~------l~-~~~~~~~vivIattn~~~~L-----d~aL~r~g 541 (791)
.--|||.|||. +|....-..+..--.+.+|+.- +. ....-.+++|.+++|.+... +..+.|
T Consensus 1560 ~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1560 PVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred cchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 01389999998 3332211111000111111110 00 01123468999999987653 334443
Q ss_pred CccccccCCCCCHHHHHHHHHHHHhcCCCCC-------------CHHHHHHHHH-------HccCCCHHHHHHHHHHHHH
Q 003859 542 RFDREFNFPLPGCEARAEILDIHTRKWKQPP-------------SRELKSELAA-------SCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 542 Rf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~-------------~~~~~~~LA~-------~t~G~s~~di~~l~~~A~~ 601 (791)
-...|++..|......+|...++.+.-+-. ++.++..+-. .-.||+|++|...+.....
T Consensus 1636 -~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1636 -KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred -CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 234578889999999999987776532111 1122211111 1268999999888764444
Q ss_pred HH
Q 003859 602 RA 603 (791)
Q Consensus 602 ~a 603 (791)
.|
T Consensus 1715 ya 1716 (3164)
T COG5245 1715 YA 1716 (3164)
T ss_pred HH
Confidence 33
No 355
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.58 E-value=0.00035 Score=72.32 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=64.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------CceEEEEEech---hhhhhhH--------------------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAG------QKVSFYMRKGA---DVLSKWV-------------------- 459 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------~~~~~~~i~~~---~~~~~~~-------------------- 459 (791)
|+....-+.|+||||+|||+||..+|......+ ..+.|+..... ..+....
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 567777899999999999999999988764443 34444433321 0111000
Q ss_pred --hHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch--hhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 460 --GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 460 --g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~--~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
.+....+..+........+.+|+||-|-.++....... .......+..++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 01111122222212244678999999988865321111 111223445555555554444556666554
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.57 E-value=0.00016 Score=72.26 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=44.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh--HhHHHHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW--VGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~--~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
.+...+.|.||+|+|||||++.|+..+......+.+-..... +.... .... ..-+-.+..+-...|.|+++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE-EEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCcc
Confidence 556678899999999999999999876322212221100000 00000 1111 2223345555666789999999854
Q ss_pred c
Q 003859 489 L 489 (791)
Q Consensus 489 L 489 (791)
-
T Consensus 101 ~ 101 (177)
T cd03222 101 Y 101 (177)
T ss_pred c
Confidence 3
No 357
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.57 E-value=0.0003 Score=78.32 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=55.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh------HhH--------HHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW------VGE--------AERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~------~g~--------~~~~l~~lf~~a~ 474 (791)
|+.+..-+||+|+||+|||+|+..+|..+...+..+.|+... ...... ++. ....+..++..+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E--Es~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE--ESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC--cCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 567777899999999999999999998887655455554332 111111 010 1123455666666
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...|.+|+||.|..+..
T Consensus 156 ~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 156 ELKPDLVIIDSIQTVYS 172 (372)
T ss_pred hcCCcEEEEcchHHhhc
Confidence 77899999999988864
No 358
>PRK09354 recA recombinase A; Provisional
Probab=97.56 E-value=0.00027 Score=77.47 Aligned_cols=83 Identities=24% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh---h-------hh----HhHHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL---S-------KW----VGEAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~---~-------~~----~g~~~~~l~~lf~~a~ 474 (791)
|++....++|+||+|||||+||-.++......+..+.|+.....--. . .+ ....+..+..+-..+.
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999999998887666655655543321100 0 00 0112222332323345
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...+.+|+||-+-.|.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999998886
No 359
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.55 E-value=9.3e-05 Score=77.09 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=41.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCc-----hhHHH--HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNW-----RNFLF--ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~-----~~~~l--~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
.+|||||||.|||+|| .+.+..+++ .++.+ ..|+..++-. -. .--|+|||||-.+.+.+.+-
T Consensus 54 HvLl~GPPGlGKTTLA-~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~----Le--~~DVLFIDEIHrl~~~vEE~ 122 (332)
T COG2255 54 HVLLFGPPGLGKTTLA-HIIANELGVNLKITSGPALEKPGDLAAILTN----LE--EGDVLFIDEIHRLSPAVEEV 122 (332)
T ss_pred eEEeeCCCCCcHHHHH-HHHHHHhcCCeEecccccccChhhHHHHHhc----CC--cCCeEEEehhhhcChhHHHH
Confidence 7999999999999655 444554443 44444 2344444332 33 26799999999998877653
No 360
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00017 Score=82.71 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.2
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.++||+||||||||++|..++..+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3699999999999988888877654
No 361
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.55 E-value=0.00068 Score=63.06 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~ 440 (791)
+++|+||+|+|||+++-.++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 68999999999999999998887653
No 362
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.54 E-value=0.0024 Score=72.14 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.....+-|+||.|+||||+.++|+...
T Consensus 98 l~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 98 LNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 4566779999999999999999998653
No 363
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00013 Score=77.03 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=36.1
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHHHH-----------HHHHHHHHH-------HhhhhhcCCceEEEEeCchhh
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI-----------LLVFQLFFQ-------ILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~-----------~d~~e~~~~-------~~~~a~~~~P~ivfldeid~~ 766 (791)
.+||.||+|||||+||..+|.. +++.+..-- -|+-..+.+ -..+|. --||||||||.+
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~-LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAe---rGIIyIDEIDKI 174 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKI-LNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAE---RGIIYIDEIDKI 174 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHH-hCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHh---CCeEEEechhhh
Confidence 7999999999999666665554 333221110 011111111 112333 579999999999
Q ss_pred ccc
Q 003859 767 RHQ 769 (791)
Q Consensus 767 a~~ 769 (791)
|..
T Consensus 175 ark 177 (408)
T COG1219 175 ARK 177 (408)
T ss_pred hcc
Confidence 874
No 364
>PRK04296 thymidine kinase; Provisional
Probab=97.53 E-value=0.0002 Score=72.47 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
-+|++||+|+|||+++..++..+...+..+.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 478999999999999999999886666665555
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.52 E-value=0.002 Score=68.85 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+..++|+||+|+||||++..||..+...+..+.++..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 44677889999999999999999999987777787776664
No 366
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.52 E-value=0.00071 Score=71.22 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (791)
.....++|.||+|||||+|++.|++.+...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 445679999999999999999999988654
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.52 E-value=0.00046 Score=78.92 Aligned_cols=82 Identities=26% Similarity=0.432 Sum_probs=55.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH------hH--------HHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV------GE--------AERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~------g~--------~~~~l~~lf~~a~ 474 (791)
|+.+...+||+|+||+|||+|+..+|..+...+.++.|+... +...... +. ....+..++..+.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E--es~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE--ESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc--ccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 567777899999999999999999998886555555555432 2111111 00 1123455666666
Q ss_pred hcCCeEEEEeCCCccCCC
Q 003859 475 RNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~ 492 (791)
...|.+|+||.+..+...
T Consensus 154 ~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred hhCCCEEEEechhhhccc
Confidence 677899999999988643
No 368
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.51 E-value=0.00052 Score=69.86 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=42.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcC-CceEEEEEechhhhh--------h-hHhHHHHHHHHHHHHHHhcCCeEEEEe
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAG-QKVSFYMRKGADVLS--------K-WVGEAERQLKLLFEEAQRNQPSIIFFD 484 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~-~~~~~~~i~~~~~~~--------~-~~g~~~~~l~~lf~~a~~~~p~VL~ID 484 (791)
-++|+||+|+||||++++++..+.... ..+.++.- ..++.. . .++.....+...+..+....|.+|++|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-CccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 489999999999999999998886432 12222211 111110 0 011111234445566666779999999
Q ss_pred CC
Q 003859 485 EI 486 (791)
Q Consensus 485 Ei 486 (791)
|+
T Consensus 82 Ei 83 (198)
T cd01131 82 EM 83 (198)
T ss_pred CC
Confidence 98
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.51 E-value=0.00039 Score=67.17 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+.+.-.++|+||+||||++|.++||....
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 34556799999999999999999997653
No 370
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.50 E-value=0.00032 Score=73.16 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC------CceEEEEEech----hhhhh----------h----------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAG------QKVSFYMRKGA----DVLSK----------W---------- 458 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------~~~~~~~i~~~----~~~~~----------~---------- 458 (791)
|+....-+.|+||||||||+++..+|....... ..+.|+..... .+... .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 567777899999999999999999986543221 33444433221 00000 0
Q ss_pred -HhHHHHHHHHHHHHHHhc-CCeEEEEeCCCccCCCCCCch--hhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 459 -VGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 459 -~g~~~~~l~~lf~~a~~~-~p~VL~IDEiD~L~~~~~~~~--~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+....+..+....... .+.+|+||-+-.++....... .......+..++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 001112222333333444 788999999987753111111 1122344555666665554445566665543
No 371
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0004 Score=76.98 Aligned_cols=116 Identities=23% Similarity=0.352 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc-C-CceEEEEEechh-----hhhh---hHhH------HHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-G-QKVSFYMRKGAD-----VLSK---WVGE------AERQLKLLFEEAQ 474 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-~-~~~~~~~i~~~~-----~~~~---~~g~------~~~~l~~lf~~a~ 474 (791)
.....++|+||+|+||||++..||..+... + ..+.++..+... .+.. +.+. ....+...+. .
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~ 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--E 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--H
Confidence 445689999999999999999999886432 3 356665544421 1111 1110 1111222222 2
Q ss_pred hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-CCCcEEEeccCCchhhhhhhhc
Q 003859 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNRVDAIDGALR 538 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-~~~~vivIattn~~~~Ld~aL~ 538 (791)
.....+||||.+...- ....+...+..+.... ....++||.+|+..+.+...+.
T Consensus 213 l~~~DlVLIDTaG~~~----------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ----------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred hcCCCEEEEcCCCCCc----------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2345799999985331 1122333344443322 2345778888887777765543
No 372
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.50 E-value=0.0014 Score=68.21 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH-----------hHHH-------HHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV-----------GEAE-------RQLKLLFEE 472 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~-----------g~~~-------~~l~~lf~~ 472 (791)
..+-.+++.|++|||||+++..|...+......+.++.-........++ .+.+ ..+..+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 4556799999999999999999988776544333332221111111110 0011 111122221
Q ss_pred HHh---cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccC
Q 003859 473 AQR---NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNF 549 (791)
Q Consensus 473 a~~---~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~ 549 (791)
... ..+++|+||++-.- ......+..++. . ...-++.+|..+...-.||+.++. -.+..+-+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~---------~~k~~~l~~~~~---~-gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~ 155 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK---------KLKSKILRQFFN---N-GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIF 155 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc---------hhhhHHHHHHHh---c-ccccceEEEEEeeecccCCHHHhh--cceEEEEe
Confidence 111 23679999997320 112233344443 1 123357777788888889999876 56666656
Q ss_pred CCCCHHHHHHHHHHH
Q 003859 550 PLPGCEARAEILDIH 564 (791)
Q Consensus 550 ~~Pd~eer~~IL~~~ 564 (791)
. .+..++..|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 5 4566655555544
No 373
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.50 E-value=0.00099 Score=69.81 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=33.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|+.+...+||+||||||||++|..++......+..+.|+...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 678888999999999999999998877654556666666544
No 374
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.00087 Score=70.17 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
.++++||+|||||+||.++|...
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999864
No 375
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00022 Score=79.72 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+.+|.++.|-+..++.+..++... ..++.+|||||||||||++|.+++..+.
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~------------------------~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN------------------------HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467788888887777666665441 1134799999999999998888877654
No 376
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.48 E-value=0.00035 Score=68.80 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-----hhhhhhH-----hHHHHHHHHHHHHHHhcCCe
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-----DVLSKWV-----GEAERQLKLLFEEAQRNQPS 479 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-----~~~~~~~-----g~~~~~l~~lf~~a~~~~p~ 479 (791)
+.+...+.|.||+|+|||||++.|+..+......+.+-..+.. ......+ -......+-.+..+....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 4566789999999999999999999775322212221111100 0011000 01122334456666777899
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhh
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID 534 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld 534 (791)
||++||--.-+ .......+..++..+... ...||.+|+..+.+.
T Consensus 103 illlDEP~~~L----------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 103 LLILDEPTAAL----------TPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred EEEEECCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 99999985333 122233334444333223 345555666655444
No 377
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.47 E-value=0.00078 Score=70.55 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=34.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~ 450 (791)
|+.+..-++|.|+||+|||+++..+|..+... +..+.|+...
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 67777889999999999999999998887666 6677777644
No 378
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00028 Score=78.79 Aligned_cols=52 Identities=17% Similarity=0.008 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
+.+|.++.|-+..++.+..++... +.+..+||+||||||||++|..++..+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~------------------------~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG------------------------RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------------------CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 457778878776666655553320 1122589999999999998888887664
No 379
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.00027 Score=81.83 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=37.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCC-cEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRP-RLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~-g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+..|+++.|-+..+..+..++... ..+ .+|||||||||||++|.+++..+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~-------------------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG-------------------------RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC-------------------------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567888888887766666664431 022 479999999999998888877654
No 380
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.46 E-value=0.00043 Score=76.61 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe-chhhhh---------hhHhHHHHHHHHHHHHHHhcCCeEEE
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK-GADVLS---------KWVGEAERQLKLLFEEAQRNQPSIIF 482 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~-~~~~~~---------~~~g~~~~~l~~lf~~a~~~~p~VL~ 482 (791)
...+||+||+|+||||++++++..+.... ...++.+. ..++.. ..++.....+...+..+....|.+|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~-~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNA-AGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCC-CCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 45689999999999999999998875331 12222221 111110 01121112345556667778899999
Q ss_pred EeCCC
Q 003859 483 FDEID 487 (791)
Q Consensus 483 IDEiD 487 (791)
++|+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99993
No 381
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00028 Score=84.82 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=37.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+.+|.+|.|-+..+..+..++... +.+..+||+||||||||++|+.++..+..
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------------------RLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------------------CCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3457778877776666666554330 11224799999999999888888876543
No 382
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.45 E-value=0.00023 Score=73.22 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~ 435 (791)
+..+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 56799999999999999999973
No 383
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.44 E-value=0.00016 Score=74.72 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=37.5
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHH---HHHHHHHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF---ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l---~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
...+||+||||||||++|.+++..........+ ...+......++.... .+.+|||||++.+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLE--QADLVCLDDVEAIAG 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcc--cCCEEEEeChhhhcC
Confidence 347999999999999988888766532110000 1122211122222122 356999999998764
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=97.43 E-value=0.0022 Score=66.87 Aligned_cols=43 Identities=37% Similarity=0.526 Sum_probs=35.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
|+.+...+||.|+||+|||+++-.+|......+..+.|+....
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 5677788999999999999999999888766677777776654
No 385
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.42 E-value=8.6e-05 Score=79.33 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=38.0
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHH--------HHHHHHHHHHHh-hhhhcCCceEEEEeCchhhcc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF--------ILLVFQLFFQIL-VPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l--------~~d~~e~~~~~~-~~a~~~~P~ivfldeid~~a~ 768 (791)
.|+++|.||||||||+||+.++...-......+ ..|+...|++.= ....-++-.|||||||-..-.
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 468999999999999877777654322110000 134444444300 000112468999999976543
No 386
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0029 Score=65.25 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=99.7
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHHhhc----CCceEEEEEechhh---hhhhHhHHHHHHHHHHHHHH----hcCCeE
Q 003859 413 PRGVLLCGPPG-TGKTLIARALACAASKA----GQKVSFYMRKGADV---LSKWVGEAERQLKLLFEEAQ----RNQPSI 480 (791)
Q Consensus 413 ~~~vLL~GppG-tGKT~laralA~~l~~~----~~~~~~~~i~~~~~---~~~~~g~~~~~l~~lf~~a~----~~~p~V 480 (791)
....||.|..+ +||..++..++..+... +.+-.++.+....- .+.. -....++.+...+. ....-|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEE
Confidence 45799999998 99999999988887432 12223333322110 0010 11233444444332 334569
Q ss_pred EEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHH
Q 003859 481 IFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEI 560 (791)
Q Consensus 481 L~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~I 560 (791)
++|+++|.| .....+.||..|+. +...+++|..|+.+..|.+.+++ ||. .+.|+.|....-.++
T Consensus 93 iII~~ae~m-----------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 93 AIIYSAELM-----------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNEL 156 (263)
T ss_pred EEEechHHh-----------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHHH
Confidence 999999988 45678889999994 66778888888888999999999 985 688999999888887
Q ss_pred HHHHHhcCCCCCCHHHHHHH
Q 003859 561 LDIHTRKWKQPPSRELKSEL 580 (791)
Q Consensus 561 L~~~l~~~~~~~~~~~~~~L 580 (791)
+...+.........+++...
T Consensus 157 ~~~~~~p~~~~~~l~~i~~~ 176 (263)
T PRK06581 157 YSQFIQPIADNKTLDFINRF 176 (263)
T ss_pred HHHhcccccccHHHHHHHHH
Confidence 77777655444443443333
No 387
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=8.8e-05 Score=77.94 Aligned_cols=61 Identities=11% Similarity=-0.009 Sum_probs=37.9
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCc-------hhHHHHHHHHHHH------HHHhhhhhcCCceEEEEeCchhh
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNW-------RNFLFILLVFQLF------FQILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~-------~~~~l~~d~~e~~------~~~~~~a~~~~P~ivfldeid~~ 766 (791)
.+|+|+||||||||+||.+++..+... ..+.+...+...+ ..++... ...-+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 489999999999999998888776432 1122222222111 1222222 35889999999654
No 388
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.41 E-value=0.00015 Score=71.76 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~ 440 (791)
+|+|+|+||+|||||++.++..+...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc
Confidence 58999999999999999999999543
No 389
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.41 E-value=0.00054 Score=77.78 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=36.2
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|-|+..+|..+.-.+..-..... -.+-.++.-.+|||+|.|||||+.+.+.+++...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~-~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~ 507 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNP-GGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP 507 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCC-CCCceeccceeEEEecCCCccHHHHHHHHHhcCc
Confidence 467777777777555432110000 0000122335799999999999999999998764
No 390
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.40 E-value=0.0003 Score=73.76 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=38.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCc-------hhHHHHHHHHHHH-------HHHhhhhhcCCceEEEEeCchhhc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNW-------RNFLFILLVFQLF-------FQILVPRHQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~-------~~~~l~~d~~e~~-------~~~~~~a~~~~P~ivfldeid~~a 767 (791)
+++|+|+||||||+|+++++..+... ....+...+...| ..++.... ...+|+|||+....
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 89999999999999998888776432 1122222221111 12222222 57899999998865
No 391
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.40 E-value=0.00046 Score=71.65 Aligned_cols=102 Identities=22% Similarity=0.378 Sum_probs=62.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEech--hhhhh----------hH----------------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA--DVLSK----------WV---------------- 459 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~--~~~~~----------~~---------------- 459 (791)
|++.+..+||+||||||||+|+..++...... +..+.|+..... .+... +.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 67788899999999999999999988766555 767777765432 11110 00
Q ss_pred ---hHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHh
Q 003859 460 ---GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (791)
Q Consensus 460 ---g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~ 513 (791)
......+..+...+....+.+|+||-+..|.... ........+..|+..+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHH
Confidence 1123334444455556677899999998883211 12223455666666665
No 392
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.40 E-value=0.0012 Score=71.80 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=83.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc--CCceEEEEEechhhhhhhHhHHH-------------------HHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKGADVLSKWVGEAE-------------------RQLKLL 469 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~i~~~~~~~~~~g~~~-------------------~~l~~l 469 (791)
.+|+|++|||.-|||||+|.-.+-..+... -.+++|. .++...-...- .-+.-+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh-----~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~v 186 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFH-----GFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVV 186 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHH-----HHHHHHHHHHHHHHHhccccCccccccccCCccHHH
Confidence 468999999999999999998887554211 0122221 11111000000 000111
Q ss_pred HHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc-hhhhhh-hhcCCCCccccc
Q 003859 470 FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDAIDG-ALRRPGRFDREF 547 (791)
Q Consensus 470 f~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~-~~~Ld~-aL~r~gRf~~~I 547 (791)
-+++ ....+||+||||..- .-...-+++.|+..|= .+.|+++||+|+ |+.|-. .|.| ..
T Consensus 187 A~eI-a~ea~lLCFDEfQVT--------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR------~~ 247 (467)
T KOG2383|consen 187 ADEI-AEEAILLCFDEFQVT--------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQR------EN 247 (467)
T ss_pred HHHH-hhhceeeeechhhhh--------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhh------hh
Confidence 1111 122469999999522 1123344555554443 347899999988 555543 3332 23
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-ccC--CCHH-HHHHHHHHHHH
Q 003859 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAAS-CVG--YCGA-DLKALCTEAAI 601 (791)
Q Consensus 548 ~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~-t~G--~s~~-di~~l~~~A~~ 601 (791)
.+| -..+|+..+.-..+....+.. ..+.. ..+ |.+. ++..++++-..
T Consensus 248 F~P------fI~~L~~rc~vi~ldS~vDYR-~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 248 FIP------FIALLEERCKVIQLDSGVDYR-RKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred hhh------HHHHHHHhheEEecCCccchh-hccCCCCceeEecChhhHHHHHHHHHH
Confidence 233 256778888777666666653 22221 111 2333 77777776554
No 393
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0017 Score=67.23 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
...--|.|.||+|||||||.+.||...
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999765
No 394
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00037 Score=80.89 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=44.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc---------Cchh-HHHH---HHHH----HHHHHHhhhhhcCCceEEEEeCchhh
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM---------NWRN-FLFI---LLVF----QLFFQILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~---------~~~~-~~l~---~d~~----e~~~~~~~~a~~~~P~ivfldeid~~ 766 (791)
|=+||+||||+|||.|++.+|..+- |+.. ..++ .-|+ -.+-+.+.+|...+| ++.|||||-+
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm 429 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKM 429 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhc
Confidence 4599999999999988888776531 1110 1111 0010 123344666777777 5679999999
Q ss_pred cccccccc
Q 003859 767 RHQYSIYH 774 (791)
Q Consensus 767 a~~~~~~~ 774 (791)
...+.+.-
T Consensus 430 ~ss~rGDP 437 (782)
T COG0466 430 GSSFRGDP 437 (782)
T ss_pred cCCCCCCh
Confidence 98877653
No 395
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.38 E-value=0.00081 Score=74.76 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=48.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH--hhcCCceEEEEEechhhhhh--hHhHHH---------HHHHHHHHHHH-----hc
Q 003859 415 GVLLCGPPGTGKTLIARALACAA--SKAGQKVSFYMRKGADVLSK--WVGEAE---------RQLKLLFEEAQ-----RN 476 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l--~~~~~~~~~~~i~~~~~~~~--~~g~~~---------~~l~~lf~~a~-----~~ 476 (791)
.+++.|.||||||.||-.++..+ ...+..+.++..+....... .+.... .....++.... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 58999999999999999999999 55566677776665433211 111110 11111222111 12
Q ss_pred CCeEEEEeCCCccCC
Q 003859 477 QPSIIFFDEIDGLAP 491 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~ 491 (791)
.-.||||||++.|..
T Consensus 83 ~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCEEEEehhHhhhh
Confidence 347999999999975
No 396
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00044 Score=80.25 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=38.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+-+|.++.|-+..++.+..++... +.+..+||+||||||||++|..++..+.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------------------YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------------------CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457888888887777777765441 1122589999999999988877777654
No 397
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.37 E-value=0.0011 Score=70.83 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~ 450 (791)
|+.+...++|.|+||+|||+++..+|..+... +..+.|+.+.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 45677789999999999999999998887555 6677777664
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0049 Score=69.00 Aligned_cols=118 Identities=18% Similarity=0.279 Sum_probs=65.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHH-hhcCCceEEEEEechhhh-----hhhHh------HHHHHHHHHHHHHHhcCCe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAA-SKAGQKVSFYMRKGADVL-----SKWVG------EAERQLKLLFEEAQRNQPS 479 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l-~~~~~~~~~~~i~~~~~~-----~~~~g------~~~~~l~~lf~~a~~~~p~ 479 (791)
.+..++|.||+|+||||++..||..+ ...+..+.++..+..... ..|.. .....+..+...+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568899999999999999999865 344566777666552111 11100 0011123334444444567
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---CCCcEEEeccCCchhhhhhhhc
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---SRGQVVLIGATNRVDAIDGALR 538 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---~~~~vivIattn~~~~Ld~aL~ 538 (791)
+||||=.-... .....+..|..++.... ....++|+.++...+.+...+.
T Consensus 302 ~VLIDTaGr~~---------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 302 LILIDTAGYSH---------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEEeCCCCCc---------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 89999642211 01234444544444321 2345677777776666655543
No 399
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.36 E-value=0.00029 Score=73.72 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.2
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+.++||||||||||+|+.+++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999888777644
No 400
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.35 E-value=0.00033 Score=78.08 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 656 LVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 656 ~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
...+.|-+..++.+..++...+ . + ..++.++++||||||||+++..++..+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~---------~--~----------~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL---------R--G----------SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH---------c--C----------CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456667777777777765421 0 0 113479999999999999888887643
No 401
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.34 E-value=8.3e-05 Score=74.33 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
..+++|+||||||||+||.+++..+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 348999999999999999888865543
No 402
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.34 E-value=0.0003 Score=74.84 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.5
Q ss_pred cEEEecCCCCChhHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
.+||+||||||||++|.+++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999888888764
No 403
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00047 Score=80.48 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+.+|.+|.|-+..++.+..++... +.+-.+||+||+|||||++|..++..+..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------------------RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457888888887777777665441 11225899999999999888888776653
No 404
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0005 Score=80.46 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=37.1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+-.|.++.|-......+..++... +.+..+||+||||||||++|+.+|..+.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~g------------------------rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERG------------------------RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457788888777766666664431 1123689999999999988877776653
No 405
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.34 E-value=0.00047 Score=76.09 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceE
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (791)
..-.||+||||||||+|++.|++.+......+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~ 201 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVH 201 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeE
Confidence 345899999999999999999998876433444
No 406
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.34 E-value=0.00028 Score=84.81 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=38.6
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHH------HHHHHHHHHHHhh-hhhcCCceEEEEeCchhhccccc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF------ILLVFQLFFQILV-PRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l------~~d~~e~~~~~~~-~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.+.+|||||||||||++|..++...- ..+..+ ..++.+.+..+.. ........+||||||+.+....+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~-~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ 126 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTR-AHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ 126 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc-CcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH
Confidence 34799999999999988887776432 111111 0111122222100 01112478999999998765443
No 407
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.34 E-value=0.00037 Score=84.77 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCchh-----
Q 003859 658 VAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWRN----- 732 (791)
Q Consensus 658 dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~----- 732 (791)
+..||.+..+.+++|+.... .. +....+.+||+||||||||++++.++..+ +..+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~----------~~---------~~~~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~ 382 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQS----------RV---------NKIKGPILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMAL 382 (784)
T ss_pred hccCHHHHHHHHHHHHHHHH----------hc---------ccCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 45577777777877755310 00 01123469999999999998888777653 2111
Q ss_pred -----HH-HH---HHH----HHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 733 -----FL-FI---LLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 733 -----~~-l~---~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.. ++ ..+ .-.+.+.+..+....| ||||||||.+...++
T Consensus 383 ~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~ 433 (784)
T PRK10787 383 GGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR 433 (784)
T ss_pred CCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC
Confidence 10 10 001 1122333444444444 799999998877544
No 408
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.00051 Score=80.98 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+.+|.+|.|-+..+..+..++... +.+..+||+||+|||||++|..++..+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------------------rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------------------RLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4567889988887777777765441 1123699999999999988877777543
No 409
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.32 E-value=0.0022 Score=74.55 Aligned_cols=248 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc--------CCceEEEEEechhhh------------------------
Q 003859 408 YHITPPRGVLLCGPPGTGKTLIARALACAASKA--------GQKVSFYMRKGADVL------------------------ 455 (791)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------~~~~~~~~i~~~~~~------------------------ 455 (791)
+.+.+...+-|+|+.|+|||||.+.|+..+... +..+.++.-......
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~ 103 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEE 103 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHH
Q ss_pred --------------------------------------------hhhHhH--HHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 456 --------------------------------------------SKWVGE--AERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 456 --------------------------------------------~~~~g~--~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
...++. .....+-.+..+.-..|.||+|||=-.-
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNH 183 (530)
T COG0488 104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183 (530)
T ss_pred HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec--------cCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHH
Q 003859 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG--------ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (791)
Q Consensus 490 ~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa--------ttn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL 561 (791)
+ .-..+..|-.+|..+.. .++||. .|+....|+..-+. .+.--+..-.=..+++....
T Consensus 184 L----------D~~~i~WLe~~L~~~~g--tviiVSHDR~FLd~V~t~I~~ld~g~l~--~y~Gny~~~~~~r~~~~~~~ 249 (530)
T COG0488 184 L----------DLESIEWLEDYLKRYPG--TVIVVSHDRYFLDNVATHILELDRGKLT--PYKGNYSSYLEQKAERLRQE 249 (530)
T ss_pred c----------CHHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHhhheEEecCCcee--EecCCHHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC---CCccCCCccccc---------cccccceeH
Q 003859 562 DIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY---PQVYTSDDKFLI---------DVDSVTVEK 629 (791)
Q Consensus 562 ~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~---~~~~~~~~~~~~---------~~~~~~lt~ 629 (791)
...... -...+..+......+....-..--..+...++.+.. ............ ......+..
T Consensus 250 ~~~~~~-----~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~ 324 (530)
T COG0488 250 AAAYEK-----QQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEF 324 (530)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEE
Q ss_pred HHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEe
Q 003859 630 YHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLC 709 (791)
Q Consensus 630 ~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~ 709 (791)
+++......- ......+.+.... ...|-|.
T Consensus 325 ~~~~~~y~~~-~~l~~~~s~~i~~-------------------------------------------------g~riaii 354 (530)
T COG0488 325 ENVSKGYDGG-RLLLKDLSFRIDR-------------------------------------------------GDRIAIV 354 (530)
T ss_pred eccccccCCC-ceeecCceEEecC-------------------------------------------------CCEEEEE
Q ss_pred cCCCCChhHHHHHHH
Q 003859 710 GSEGTGVFNRIILGL 724 (791)
Q Consensus 710 GPPGtGKT~la~~~~ 724 (791)
||.|+|||+|++.++
T Consensus 355 G~NG~GKSTLlk~l~ 369 (530)
T COG0488 355 GPNGAGKSTLLKLLA 369 (530)
T ss_pred CCCCCCHHHHHHHHh
No 410
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.00054 Score=81.05 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=37.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+-+|++|.|-+..++.+..++... +....+|||||+|||||+++..++..+.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~g------------------------RL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGG------------------------RLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457888888777777666664431 1122689999999999988877776653
No 411
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.32 E-value=0.00074 Score=71.89 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec-hhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-ADV 454 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~-~~~ 454 (791)
.++++++-.....+.|..++.. ....++|+||+|+||||+++++...+......+ +.+.. .++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~i--itiEdp~E~ 120 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNI--ITVEDPVEY 120 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeE--EEECCCcee
Confidence 3566777667777777666533 234589999999999999999988875433222 22211 111
Q ss_pred hh------hhHhHHHHHHHHHHHHHHhcCCeEEEEeCCC
Q 003859 455 LS------KWVGEAERQLKLLFEEAQRNQPSIIFFDEID 487 (791)
Q Consensus 455 ~~------~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD 487 (791)
.- ............++..+....|.+|+|.|+-
T Consensus 121 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 121 QIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred cCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 0001111234556666777889999999994
No 412
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.32 E-value=0.0065 Score=66.38 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=33.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+..++|+||+|+||||++..||..+...+..+.++..+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 34677899999999999999999999987776777665553
No 413
>PHA02244 ATPase-like protein
Probab=97.32 E-value=0.00096 Score=73.25 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=36.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhH-----HHHHHHH------HHHH-HHhhhhhcCCceEEEEeCchhh
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNF-----LFILLVF------QLFF-QILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~-----~l~~d~~------e~~~-~~~~~a~~~~P~ivfldeid~~ 766 (791)
.+||+||||||||++|.++++.+ ++... .-.+++. ..|. .-|.+|. +...+||||||+.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a 192 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS 192 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC
Confidence 69999999999998888877653 32111 0011111 0111 2344443 36899999999954
No 414
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.31 E-value=0.00076 Score=77.64 Aligned_cols=171 Identities=25% Similarity=0.311 Sum_probs=103.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh-----hHhHHHHHH--------HHHHHHHHhcCCe
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK-----WVGEAERQL--------KLLFEEAQRNQPS 479 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~-----~~g~~~~~l--------~~lf~~a~~~~p~ 479 (791)
...+||+|.+||||-.|+++|..... ..-+|+.++|..+-.. ++|...... +..+..|. ..
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gG 409 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GG 409 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CC
Confidence 34699999999999999999988765 3467888888654433 232222111 12222222 23
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--------CCCcEEEeccCCchhhhhhhhcCCCCccccc----
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------SRGQVVLIGATNRVDAIDGALRRPGRFDREF---- 547 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--------~~~~vivIattn~~~~Ld~aL~r~gRf~~~I---- 547 (791)
.||||||..| .-.++..||..|..-. ..=.|-||+||+.. | ..|.+.|+|..-+
T Consensus 410 tlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l-~~lv~~g~fredLyyrL 475 (606)
T COG3284 410 TLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--L-AQLVEQGRFREDLYYRL 475 (606)
T ss_pred ccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--H-HHHHHcCCchHHHHHHh
Confidence 8999999766 3467778888876421 11146788888773 2 2344456665433
Q ss_pred ---cCCCCCHHH---HHHHHHHHHhc---CCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 548 ---NFPLPGCEA---RAEILDIHTRK---WKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 548 ---~~~~Pd~ee---r~~IL~~~l~~---~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|.+|...+ +..+|..++.. +.+.++.+++..|...-=--+-++|.+++..++..+
T Consensus 476 ~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 476 NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 234454433 34444444433 456778777766655433336788888888776543
No 415
>PTZ00202 tuzin; Provisional
Probab=97.31 E-value=0.0069 Score=67.57 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=97.0
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech---
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--- 452 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--- 452 (791)
....+++|.+.....|..++... ....+.-++|+|++|||||+|++.++..+. ...+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNprg~e 323 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVRGTE 323 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCCCHH
Confidence 34568999999999999887531 233455788999999999999999997774 223333332
Q ss_pred hhhhhh---H--------hHHHHHHHHHHHHHHhc--CCeEEEEe--CCCccCCCCCCchhhhhHHHHHHHHHHHhccCC
Q 003859 453 DVLSKW---V--------GEAERQLKLLFEEAQRN--QPSIIFFD--EIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (791)
Q Consensus 453 ~~~~~~---~--------g~~~~~l~~lf~~a~~~--~p~VL~ID--EiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~ 517 (791)
+++... . +..-..|...+..+... ...||+|. |-+. ..++.+..+.+--. ..
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~------------l~rvyne~v~la~d-rr 390 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSS------------LQRVYNEVVALACD-RR 390 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCc------------HHHHHHHHHHHHcc-ch
Confidence 222111 1 12223333333333322 23344443 3322 23444444433221 11
Q ss_pred CCcEEEeccCCchhhhh--hhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHH
Q 003859 518 RGQVVLIGATNRVDAID--GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKAL 595 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld--~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l 595 (791)
-.++++ -. ..+.|. ...+. |++. ..+|..+.+|..+..++.+....+ ..+. -+.|-+..|+..|
T Consensus 391 ~ch~v~-ev--pleslt~~~~~lp--rldf-~~vp~fsr~qaf~y~~h~~dal~l-------~~fv-e~vgtns~d~del 456 (550)
T PTZ00202 391 LCHVVI-EV--PLESLTIANTLLP--RLDF-YLVPNFSRSQAFAYTQHAIDALSL-------EHFV-DVVGTNSNDLDEL 456 (550)
T ss_pred hheeee-ee--hHhhcchhcccCc--ccee-EecCCCCHHHHHHHHhhccchHHh-------hHHH-HhhcCCcccHHHH
Confidence 112222 11 112222 22233 6763 568889999998888877654322 1122 2456667777777
Q ss_pred HH
Q 003859 596 CT 597 (791)
Q Consensus 596 ~~ 597 (791)
+.
T Consensus 457 ~a 458 (550)
T PTZ00202 457 LA 458 (550)
T ss_pred HH
Confidence 65
No 416
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0019 Score=72.82 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=68.4
Q ss_pred hhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeC
Q 003859 406 ASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDE 485 (791)
Q Consensus 406 ~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDE 485 (791)
..+...++ .++|+||.+|||||+++.+...+... ++.++-.+........ . .....+..+.......|||||
T Consensus 31 ~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~-d~~~~~~~~~~~~~~yifLDE 102 (398)
T COG1373 31 KKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-L-DLLRAYIELKEREKSYIFLDE 102 (398)
T ss_pred hhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-H-HHHHHHHHhhccCCceEEEec
Confidence 33333444 89999999999999998887766322 3333333333221111 1 111222222222456999999
Q ss_pred CCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhh--hhhhhcCCCCccccccCCCCCHHHHHHH
Q 003859 486 IDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA--IDGALRRPGRFDREFNFPLPGCEARAEI 560 (791)
Q Consensus 486 iD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~--Ld~aL~r~gRf~~~I~~~~Pd~eer~~I 560 (791)
++.+-. -...+..| .+.... .|++.+++...-. +...| +||. ..+.+.+.+..+...+
T Consensus 103 Iq~v~~---------W~~~lk~l---~d~~~~--~v~itgsss~ll~~~~~~~L--~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 103 IQNVPD---------WERALKYL---YDRGNL--DVLITGSSSSLLSKEISESL--AGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ccCchh---------HHHHHHHH---Hccccc--eEEEECCchhhhccchhhhc--CCCc-eeEEECCCCHHHHHhh
Confidence 986631 12222222 231111 4555555443322 33333 4585 5677888888887653
No 417
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.30 E-value=0.00036 Score=75.74 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=40.3
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc-------hhHHHHHHHHHHH-----HHHhhhhhcCCceEEEEeCchhh
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW-------RNFLFILLVFQLF-----FQILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~-------~~~~l~~d~~e~~-----~~~~~~a~~~~P~ivfldeid~~ 766 (791)
..|++|+||||||||+|+.+++..+..- ..+.|..++...+ ...+.... ..-+|+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 3489999999999999998888776431 3334444443222 22222222 5789999999653
No 418
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.00061 Score=78.67 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=36.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+-+|.++.|-...+..+...+... +.+..+||+||||||||++|..++..+
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~------------------------ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND------------------------RLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------------------CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567888888776666555443220 113479999999999998888777765
No 419
>PRK08116 hypothetical protein; Validated
Probab=97.30 E-value=0.00014 Score=77.57 Aligned_cols=25 Identities=32% Similarity=0.186 Sum_probs=21.8
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.|++|+|+||||||+||.+++..+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999988887754
No 420
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.30 E-value=0.00061 Score=65.65 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
+.+...+.|.||+|+|||||+++|+..+......+.+-......+...+.+ . ..-+-.+..+....|.||++||-..-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~-G-~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-G-EKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH-H-HHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 456677899999999999999999987632211111100000000000111 1 12233345556667889999998643
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 490 ~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
+ .......+...+..+. ..+|.+|+.++.+
T Consensus 101 L----------D~~~~~~l~~~l~~~~----~til~~th~~~~~ 130 (144)
T cd03221 101 L----------DLESIEALEEALKEYP----GTVILVSHDRYFL 130 (144)
T ss_pred C----------CHHHHHHHHHHHHHcC----CEEEEEECCHHHH
Confidence 3 2222333444444331 2555667665554
No 421
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.30 E-value=0.00033 Score=76.44 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
+.+|.++.|-...+..+..++... ..|.+||+||||||||+++.+++..+.+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------------------NMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356677766666666666654330 1236899999999999988888877543
No 422
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.30 E-value=0.00017 Score=74.88 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=36.1
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
..++|+||||||||++|.+++.............+..+.... + .......+|||||++.+..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~-~--~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA-F--DFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH-H--hhcccCCEEEEeChhhcCc
Confidence 379999999999999888887765322111111111111111 1 1122467899999987643
No 423
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.0008 Score=65.63 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=59.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh----hhhh---h---HhHHHHHHHHHHHHHHhcCCe
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD----VLSK---W---VGEAERQLKLLFEEAQRNQPS 479 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~----~~~~---~---~g~~~~~l~~lf~~a~~~~p~ 479 (791)
+.+...++|.||+|+|||+|+++|+..+......+.+-...... .... + .... ...+-.+..+-...|.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPD 100 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCC
Confidence 35556799999999999999999998764222122211111000 0000 0 1111 2223334555556688
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhh
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDG 535 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~ 535 (791)
++++||...=+ .......+...+..+... ...+|.+|+..+.+..
T Consensus 101 i~ilDEp~~~l----------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~ 145 (157)
T cd00267 101 LLLLDEPTSGL----------DPASRERLLELLRELAEE-GRTVIIVTHDPELAEL 145 (157)
T ss_pred EEEEeCCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 99999986433 112222333333332222 2455666776665554
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.28 E-value=0.0049 Score=69.86 Aligned_cols=79 Identities=27% Similarity=0.294 Sum_probs=52.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEechhh-----hhhhH-------------hHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADV-----LSKWV-------------GEAERQLKLLFE 471 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~~-----~~~~~-------------g~~~~~l~~lf~ 471 (791)
.+|..++|+|++|+||||++..||..+... +..+.++..+.... +..|. ..........+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346789999999999999999999988777 77777776663211 11110 012223334555
Q ss_pred HHHhcCCeEEEEeCCCcc
Q 003859 472 EAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 472 ~a~~~~p~VL~IDEiD~L 489 (791)
.+......+||||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 555556679999977544
No 425
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.27 E-value=0.0029 Score=61.80 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
-|.+|+++|.|||++|-++|-.+...+.++.++..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47789999999999999999998888877777544
No 426
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0011 Score=65.79 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999865
No 427
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.00075 Score=76.24 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=36.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+..|.+|.|-+..+..+..++... +.+..+||+||||||||++|..++..++.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~------------------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG------------------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC------------------------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456777777766655555554330 11236999999999999888877776643
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.25 E-value=0.0029 Score=65.17 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=57.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--HhhcCCce-------EE-----EEEechhhhhhhHhHHHHHHHHHHHH-HHhcCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACA--ASKAGQKV-------SF-----YMRKGADVLSKWVGEAERQLKLLFEE-AQRNQP 478 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~--l~~~~~~~-------~~-----~~i~~~~~~~~~~g~~~~~l~~lf~~-a~~~~p 478 (791)
+.++|+||.|+|||++.+.++.. +...+..+ .+ ..+...+-+..........++.+... +....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 67999999999999999999843 33332211 11 11122211222222333333333222 223568
Q ss_pred eEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhh
Q 003859 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGA 536 (791)
Q Consensus 479 ~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~a 536 (791)
.+|+|||+..-. +......+...++..+.. .......+|.+|...+.+...
T Consensus 110 slvllDE~~~gt------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 110 SLVLIDEFGKGT------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred cEEEeccccCCC------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhh
Confidence 899999985322 001112233333333321 111234677788776655444
No 429
>PF13173 AAA_14: AAA domain
Probab=97.25 E-value=0.00074 Score=63.56 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=39.2
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc--------CchhHHHHHHH-HHHHHHHhhhhhcCCceEEEEeCchhhc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM--------NWRNFLFILLV-FQLFFQILVPRHQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~--------~~~~~~l~~d~-~e~~~~~~~~a~~~~P~ivfldeid~~a 767 (791)
+-++|+||.|||||++++.++..+. .+......... .+ +.+.+.+.....+++|||||+-.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhc
Confidence 3589999999999999999997765 22222221110 11 2222222222268999999997764
No 430
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.24 E-value=0.00069 Score=75.20 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+..|.++.|-...++.+..++... +.+..+|||||||+|||++|..++..+.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~------------------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG------------------------RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888888887777776664330 0123689999999999999988887764
No 431
>PRK04328 hypothetical protein; Provisional
Probab=97.24 E-value=0.0034 Score=66.33 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=32.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
|+++...+||+||||||||+|+..++......+..+.|+..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 56778889999999999999999887765455656666554
No 432
>PRK08727 hypothetical protein; Validated
Probab=97.24 E-value=0.00031 Score=73.38 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=38.3
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhH-HH--HHHHHHHHHHHhhhhhcCCceEEEEeCchhhcc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNF-LF--ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~-~l--~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
.++|+||+|||||+|+.+++......... .+ ..+....+..++.... ..-+|+|||++.++.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~--~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALE--GRSLVALDGLESIAG 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHh--cCCEEEEeCcccccC
Confidence 49999999999999888876654332110 00 1122233333333333 367999999998764
No 433
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.24 E-value=8.1e-05 Score=80.59 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=41.4
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhH-------HHHHHHH--------------HHHHHHhhhhhcCCceEEEEe
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNF-------LFILLVF--------------QLFFQILVPRHQRRHWCIYLV 761 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~-------~l~~d~~--------------e~~~~~~~~a~~~~P~ivfld 761 (791)
...|||.||||||||+++..+++.+- +... +...|+. +.....|..|.+ .+++|+||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~-~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN-WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC-CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 34699999999999988888887642 1110 1111221 111123445543 68999999
Q ss_pred Cchhhccccc
Q 003859 762 KLEEQRHQYS 771 (791)
Q Consensus 762 eid~~a~~~~ 771 (791)
||+..-+.+.
T Consensus 142 Ein~a~p~~~ 151 (327)
T TIGR01650 142 EYDAGRPDVM 151 (327)
T ss_pred hhhccCHHHH
Confidence 9997655443
No 434
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.24 E-value=0.00039 Score=79.81 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=44.4
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
.-|+++.|++++++.|.+++... ...++ .....++|+||||+|||+||+.||..+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~A------a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHA------AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHH------HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 34788999999999999887432 11222 23457899999999999999999998864
No 435
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.23 E-value=0.00031 Score=65.09 Aligned_cols=23 Identities=39% Similarity=0.849 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 003859 416 VLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~ 438 (791)
|+|+|+|||||||+|+.||..++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999984
No 436
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0049 Score=68.05 Aligned_cols=65 Identities=25% Similarity=0.260 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 384 LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 384 ~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.+.+...+.+.+...+..+..+ .+.++..++|+||+|+||||++..||..+...+..+.++..+.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 4566667766665544333322 2345678999999999999999999998877777777776654
No 437
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00043 Score=75.74 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=41.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHHH-H----------HHHHHHHHHHhhhh----hcCCceEEEEeCchhhccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFLF-I----------LLVFQLFFQILVPR----HQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l-~----------~d~~e~~~~~~~~a----~~~~P~ivfldeid~~a~~ 769 (791)
.+||.||+|+|||+||..+|. ++++.+..- + -|+--.+.++|+.| .+++-=||||||+|.++..
T Consensus 228 NvLllGPtGsGKTllaqTLAr-~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLAR-VLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred cEEEECCCCCchhHHHHHHHH-HhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 799999999999966666555 444331111 0 12223333344333 2335689999999999964
Q ss_pred ccccc
Q 003859 770 YSIYH 774 (791)
Q Consensus 770 ~~~~~ 774 (791)
...-|
T Consensus 307 ~~~i~ 311 (564)
T KOG0745|consen 307 AESIH 311 (564)
T ss_pred Ccccc
Confidence 44433
No 438
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.22 E-value=0.00088 Score=71.34 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=55.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceE-----EEEEe-chhhhhhh-------HhH------HHHHHHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVS-----FYMRK-GADVLSKW-------VGE------AERQLKLLFEEAQ 474 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~-----~~~i~-~~~~~~~~-------~g~------~~~~l~~lf~~a~ 474 (791)
.+++|.||+|+|||||+++|+..+......+. +..++ ...+...+ ++. .......++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988753321111 11111 11111110 000 0111334566666
Q ss_pred hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
...|.||++||+- ....+..++..+. ..+.||+++...
T Consensus 192 ~~~P~villDE~~-------------~~e~~~~l~~~~~-----~G~~vI~ttH~~ 229 (270)
T TIGR02858 192 SMSPDVIVVDEIG-------------REEDVEALLEALH-----AGVSIIATAHGR 229 (270)
T ss_pred hCCCCEEEEeCCC-------------cHHHHHHHHHHHh-----CCCEEEEEechh
Confidence 6789999999962 1223334444443 245677777753
No 439
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.22 E-value=0.00054 Score=70.88 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCC-cEEEecCCCCChhHHHHHHHHHHcCc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRP-RLLLCGSEGTGVFNRIILGLQFYMNW 730 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~-g~Ll~GPPGtGKT~la~~~~~~~~~~ 730 (791)
..+.++++.|++.+.+.++.-... |.+ + .+. .+||+|+.|||||.++++++..|...
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~----------Fl~----------G--~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQ----------FLQ----------G--LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH----------HHc----------C--CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 467889999998888777664322 111 1 122 69999999999999999999888765
Q ss_pred hhHHHH------HHHHHHHHHHhhhhhcCCceEEEEeCc
Q 003859 731 RNFLFI------LLVFQLFFQILVPRHQRRHWCIYLVKL 763 (791)
Q Consensus 731 ~~~~l~------~d~~e~~~~~~~~a~~~~P~ivfldei 763 (791)
...++. .++-+++.. +. .+..+.|||+|++
T Consensus 80 GLRlIev~k~~L~~l~~l~~~-l~--~~~~kFIlf~DDL 115 (249)
T PF05673_consen 80 GLRLIEVSKEDLGDLPELLDL-LR--DRPYKFILFCDDL 115 (249)
T ss_pred CceEEEECHHHhccHHHHHHH-Hh--cCCCCEEEEecCC
Confidence 422221 111233322 22 2335899999985
No 440
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.22 E-value=0.001 Score=79.76 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=51.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh---hhh-------h----HhHHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV---LSK-------W----VGEAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~---~~~-------~----~g~~~~~l~~lf~~a~ 474 (791)
|+.....++|+||+|||||+|+..++......+..+.|+.....-- ... + ....+..+..+-..+.
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5677788999999999999999887766655555565554322110 000 0 0012222222223344
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...+.+|+||-+-.|++
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 55788999999999986
No 441
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0021 Score=64.77 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=85.1
Q ss_pred cCChhHhhhcC--CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhh-----------------
Q 003859 399 LLYPDFFASYH--ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSK----------------- 457 (791)
Q Consensus 399 l~~~~~~~~~g--~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~----------------- 457 (791)
..+.++-.++| ++.+.-+||-|+.|||||.|++.++-=+-..++.+.++..... +++.+
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 44556666665 4556668899999999999999999777666767776643321 11110
Q ss_pred ------------hHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEec
Q 003859 458 ------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (791)
Q Consensus 458 ------------~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIa 525 (791)
........+..+.+..+.....||+||-+..++... ....+..|+..+..+...+++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~~~vl~fm~~~r~l~d~gKvIil- 163 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SEDAVLNFMTFLRKLSDLGKVIIL- 163 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cHHHHHHHHHHHHHHHhCCCEEEE-
Confidence 012344556666666666677899999998876421 233455666666767767777765
Q ss_pred cCCchhhhhhhhcC
Q 003859 526 ATNRVDAIDGALRR 539 (791)
Q Consensus 526 ttn~~~~Ld~aL~r 539 (791)
|-+|..++.++..
T Consensus 164 -Tvhp~~l~e~~~~ 176 (235)
T COG2874 164 -TVHPSALDEDVLT 176 (235)
T ss_pred -EeChhhcCHHHHH
Confidence 3345666666544
No 442
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.00075 Score=68.38 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcC---CceEEEEEech-hhhhhh-------Hh------HHHHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAG---QKVSFYMRKGA-DVLSKW-------VG------EAERQLKLLFEEAQ 474 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~---~~~~~~~i~~~-~~~~~~-------~g------~~~~~l~~lf~~a~ 474 (791)
...+.||.|||||||||+.|-||+.+.... ....+..++.. ++..-. .| ...-.-..++...+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 345799999999999999999999886541 12222233322 111110 01 11122344566677
Q ss_pred hcCCeEEEEeCCCc
Q 003859 475 RNQPSIIFFDEIDG 488 (791)
Q Consensus 475 ~~~p~VL~IDEiD~ 488 (791)
.+.|-|+++|||..
T Consensus 216 sm~PEViIvDEIGt 229 (308)
T COG3854 216 SMSPEVIIVDEIGT 229 (308)
T ss_pred hcCCcEEEEecccc
Confidence 88999999999953
No 443
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.21 E-value=0.0078 Score=75.35 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=81.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh-----hhhhhHhHH-----------------------HH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD-----VLSKWVGEA-----------------------ER 464 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~-----~~~~~~g~~-----------------------~~ 464 (791)
.+-++|+||+|.|||+++...+.... .+..+.++..+ |+....... ..
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~----~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN----NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC----CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 34699999999999999999886442 34455554321 211111000 11
Q ss_pred HHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhh-hhhcCCCC
Q 003859 465 QLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID-GALRRPGR 542 (791)
Q Consensus 465 ~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld-~aL~r~gR 542 (791)
.+..++..... ..|.||+||++|.+-. ..+...|..++... ...+.+|.++...-.++ ..+...+.
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~----------~~~~~~l~~l~~~~--~~~~~lv~~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITN----------PEIHEAMRFFLRHQ--PENLTLVVLSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCC----------hHHHHHHHHHHHhC--CCCeEEEEEeCCCCCCchHhHHhcCc
Confidence 22233333332 5689999999997731 12222333333332 23333333443311121 11111112
Q ss_pred ccccccCC--CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCC
Q 003859 543 FDREFNFP--LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (791)
Q Consensus 543 f~~~I~~~--~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s 588 (791)
+ ..|... ..+.++...++...+. ..++...+..|...|.|+.
T Consensus 176 ~-~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 L-LEIGSQQLAFDHQEAQQFFDQRLS---SPIEAAESSRLCDDVEGWA 219 (903)
T ss_pred c-eecCHHhCCCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhCChH
Confidence 1 123333 6688888888776543 3456667778888888864
No 444
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.21 E-value=0.0037 Score=70.53 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=33.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
+|..|+|+|++|+||||++..||..+...+..+.++..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 4677999999999999999999999987777777776554
No 445
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.21 E-value=0.0037 Score=71.02 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh--hcCCceEEEEEechhh-----hhhhHh---------HHHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS--KAGQKVSFYMRKGADV-----LSKWVG---------EAERQLKLLFEEAQR 475 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~--~~~~~~~~~~i~~~~~-----~~~~~g---------~~~~~l~~lf~~a~~ 475 (791)
.+..++|+||+|+||||++..||..+. ..+..+.++..+.... +..|.. .....+...+...
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-- 297 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-- 297 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--
Confidence 346799999999999999999998886 3456788777665221 111100 1112222222222
Q ss_pred cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-CCCCcEEEeccCCchhhhhhhh
Q 003859 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-DSRGQVVLIGATNRVDAIDGAL 537 (791)
Q Consensus 476 ~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-~~~~~vivIattn~~~~Ld~aL 537 (791)
....+||||-.-..- .....+..|..++... .....++|+.++.....+...+
T Consensus 298 ~~~DlVlIDt~G~~~---------~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 298 RDCDVILIDTAGRSQ---------RDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred CCCCEEEEeCCCCCC---------CCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 235799999874321 1223344455555521 2223355666655555665544
No 446
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.0017 Score=64.29 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+.+...+.|.||+|+|||||++.|+..+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45667899999999999999999998763
No 447
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.00084 Score=79.89 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+..|.+|.|-...++.+..++... +.+..+|||||||||||++|+.+|..+..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------------------KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4567888888887777777765441 11236899999999999888888776543
No 448
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.20 E-value=0.0034 Score=65.06 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|+.+...++|+|+||+|||+++..+|......+..+.|+...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 567778899999999999999999987765556666666553
No 449
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.00056 Score=78.17 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=39.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCc---------hhHHHHHHHHHHHH----HHhhhhhcCCceEEEEeCchhhcc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNW---------RNFLFILLVFQLFF----QILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~---------~~~~l~~d~~e~~~----~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
.++||||||||||+|+.+++..+... ....+...+...+. ..|....+..|.+|+|||++.++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC
Confidence 49999999999999998887764321 11122222322211 123333334689999999997753
No 450
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.00019 Score=75.88 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=39.6
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc-------hhHHHHHHHHHHHH-----HHhhhhhcCCceEEEEeCchhh
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW-------RNFLFILLVFQLFF-----QILVPRHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~-------~~~~l~~d~~e~~~-----~~~~~a~~~~P~ivfldeid~~ 766 (791)
+.+++|+||||||||+||++++..+..- ..+.+..++-..+. ..|.+.. ...-+|+||||-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCc
Confidence 3489999999999999998888766531 22333333322222 1222212 25789999999764
No 451
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.19 E-value=0.00018 Score=72.87 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=56.8
Q ss_pred EEEEcCCCChHHHHHHHH-HHHHhhcCCceEEEEEechhh--hhhhHhH-HHHH------------HHHHHHHHHhcCCe
Q 003859 416 VLLCGPPGTGKTLIARAL-ACAASKAGQKVSFYMRKGADV--LSKWVGE-AERQ------------LKLLFEEAQRNQPS 479 (791)
Q Consensus 416 vLL~GppGtGKT~laral-A~~l~~~~~~~~~~~i~~~~~--~~~~~g~-~~~~------------l~~lf~~a~~~~p~ 479 (791)
.|++|.||+|||+.|-.. +...-..+..+ +..+++..+ +....+. .... ...+.........+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V-~tni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPV-YTNIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---E-EE--TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEE-EEccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999987655 54443333222 223332110 0010000 0000 00111111111467
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCC
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~ 550 (791)
||+|||++.+++.+...... . ...+.++..... ..+-||.+|..+..|++.++. .....+.+.
T Consensus 82 liviDEa~~~~~~r~~~~~~-~----~~~~~~l~~hRh-~g~diiliTQ~~~~id~~ir~--lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-V----PEIIEFLAQHRH-YGWDIILITQSPSQIDKFIRD--LVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T---------HHHHGGGGCCC-TT-EEEEEES-GGGB-HHHHC--CEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc-c----hHHHHHHHHhCc-CCcEEEEEeCCHHHHhHHHHH--HHheEEEEE
Confidence 99999999999876542111 1 122344443333 356777888899999999876 666555543
No 452
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.00091 Score=76.62 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=39.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+.+|.+|.|-...+..+..++... +.+..+|||||||||||++|..++..+..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------------------RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3468888888887777666664431 11236999999999999988888877653
No 453
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0011 Score=77.11 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
+..|.++.|-...+..+..++... +.+..+||+||||||||++|..++..+.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------------------KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456778877777776666664430 1122589999999999988888887654
No 454
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.18 E-value=0.0015 Score=72.69 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=46.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-hhh-----------hhhHhHHHHHHHHHHHHHHhcCCeEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-DVL-----------SKWVGEAERQLKLLFEEAQRNQPSII 481 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-~~~-----------~~~~g~~~~~l~~lf~~a~~~~p~VL 481 (791)
..+|++||+|+||||++++++..+........++.+... ++. ...++.....+..++..+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 468999999999999999999988543222233333211 111 00111111234456667777889999
Q ss_pred EEeCCC
Q 003859 482 FFDEID 487 (791)
Q Consensus 482 ~IDEiD 487 (791)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
No 455
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.18 E-value=0.0018 Score=74.21 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=54.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH------hH--------HHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV------GE--------AERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~------g~--------~~~~l~~lf~~a~ 474 (791)
|+.+..-+||+|+||+|||+|+..+|..+...+.++.|+.... ...... +. .+..+..+...+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 5677788999999999999999999988866655555554321 111110 00 0113345555666
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...|.+|+||.|..+..
T Consensus 168 ~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 168 EENPQACVIDSIQTLYS 184 (454)
T ss_pred hcCCcEEEEecchhhcc
Confidence 67899999999988764
No 456
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.00084 Score=78.35 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
+-+|.++.|-+..++.+..++... +.+..+||+||||||||++|..++..+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------------------RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------------------CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457788888777776666664431 0122589999999999988888777664
No 457
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.16 E-value=0.0024 Score=63.67 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+.+...+.|.||+|+|||||++.|+..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45667799999999999999999998753
No 458
>PRK13695 putative NTPase; Provisional
Probab=97.14 E-value=0.0053 Score=60.96 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcC
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAG 441 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~ 441 (791)
.++|+|++|+|||||++.|+..+...+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G 28 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEG 28 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999999998875433
No 459
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.00077 Score=78.18 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=34.9
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCch-----------hHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchh
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWR-----------NFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEE 765 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~-----------~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~ 765 (791)
=+|||||||-|||+||. ++|.-+|.. .+.+...+...+...-+--...+|.||++||||-
T Consensus 328 ilLL~GppGlGKTTLAH-ViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAH-VIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred eEEeecCCCCChhHHHH-HHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 49999999999996554 444444422 2222222222222211121225799999999985
No 460
>PHA02774 E1; Provisional
Probab=97.13 E-value=0.0014 Score=75.57 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
.+..++++||||||||||++|-+|++.+. +..+.|+.
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~--G~vi~fvN 467 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLK--GKVISFVN 467 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEE
Confidence 34457899999999999999999999984 33345443
No 461
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0029 Score=69.41 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=61.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHh--------------HHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVG--------------EAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g--------------~~~~~l~~lf~~a~ 474 (791)
|+-+..-+||-|.||.|||||.-.+|..+...+ .++++++.+-..++.. -.+.++..++..+.
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 346667789999999999999999999887654 5556666544433211 14456778888888
Q ss_pred hcCCeEEEEeCCCccCCCC
Q 003859 475 RNQPSIIFFDEIDGLAPVR 493 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~~ 493 (791)
..+|.+++||-|..+....
T Consensus 166 ~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred hcCCCEEEEeccceeeccc
Confidence 8999999999999887654
No 462
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=0.0004 Score=81.02 Aligned_cols=78 Identities=9% Similarity=-0.018 Sum_probs=45.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcC----c-----hhHHHHHHHHHHHH----HHhhhhhcCCceEEEEeCchhhcccc-
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMN----W-----RNFLFILLVFQLFF----QILVPRHQRRHWCIYLVKLEEQRHQY- 770 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~----~-----~~~~l~~d~~e~~~----~~~~~a~~~~P~ivfldeid~~a~~~- 770 (791)
.|+|||++|||||+|+.+++..+.. . ....|..++...+. ..|.+..+ .+.+|+||||+.++..-
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKES 394 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCHH
Confidence 3999999999999999888876532 1 11222223321111 12333333 57899999999887643
Q ss_pred -ccccccccccccc
Q 003859 771 -SIYHSSIFGGRTH 783 (791)
Q Consensus 771 -~~~~~~~~~~~~~ 783 (791)
+..-+.+|+.+..
T Consensus 395 tqeeLF~l~N~l~e 408 (617)
T PRK14086 395 TQEEFFHTFNTLHN 408 (617)
T ss_pred HHHHHHHHHHHHHh
Confidence 2233345554433
No 463
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.12 E-value=0.011 Score=70.15 Aligned_cols=180 Identities=20% Similarity=0.229 Sum_probs=97.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+++...+.+-....++.|... ...+-+||+-|.|.||||++-.++. ....+..+.-+.++..+
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~----------------~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~d 76 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA----------------NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESD 76 (894)
T ss_pred CCCCcccccccHHHHHHHhcC----------------CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCcc
Confidence 344455556666666555442 2335699999999999999999987 54556667666665432
Q ss_pred -----hhhhhHh----------H-------------HHHHHHHHHHH-HHhcCCeEEEEeCCCccCCCCCCchhhhhHHH
Q 003859 454 -----VLSKWVG----------E-------------AERQLKLLFEE-AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSI 504 (791)
Q Consensus 454 -----~~~~~~g----------~-------------~~~~l~~lf~~-a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v 504 (791)
|++.... . ....+..+|.. +....|++||||+.|.+-. ..+
T Consensus 77 ndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~----------~~l 146 (894)
T COG2909 77 NDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISD----------PAL 146 (894)
T ss_pred CCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCc----------ccH
Confidence 2221111 1 12244555544 4556799999999998741 222
Q ss_pred HHHHHHHHhccCCCCcEEEeccC-CchhhhhhhhcCCCCccccccCCC----CCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003859 505 VSTLLALMDGLDSRGQVVLIGAT-NRVDAIDGALRRPGRFDREFNFPL----PGCEARAEILDIHTRKWKQPPSRELKSE 579 (791)
Q Consensus 505 ~~~Ll~~l~~~~~~~~vivIatt-n~~~~Ld~aL~r~gRf~~~I~~~~----Pd~eer~~IL~~~l~~~~~~~~~~~~~~ 579 (791)
-..+--+++ ....++.+|.+| ++|..--..++ -=+..+++.. .+.++-.++|..... ..++...++.
T Consensus 147 ~~~l~fLl~--~~P~~l~lvv~SR~rP~l~la~lR---lr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld~~~~~~ 218 (894)
T COG2909 147 HEALRFLLK--HAPENLTLVVTSRSRPQLGLARLR---LRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLDAADLKA 218 (894)
T ss_pred HHHHHHHHH--hCCCCeEEEEEeccCCCCccccee---ehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCChHHHHH
Confidence 223333333 234456555555 33432111111 0022333332 456666666665442 3445555566
Q ss_pred HHHHccCCC
Q 003859 580 LAASCVGYC 588 (791)
Q Consensus 580 LA~~t~G~s 588 (791)
|...+.|+.
T Consensus 219 L~~~teGW~ 227 (894)
T COG2909 219 LYDRTEGWA 227 (894)
T ss_pred HHhhcccHH
Confidence 666666653
No 464
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.12 E-value=0.00082 Score=67.65 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
..+||+||||||||+++..++..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36999999999999999888887754
No 465
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.11 E-value=0.0086 Score=59.31 Aligned_cols=36 Identities=39% Similarity=0.440 Sum_probs=30.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.++++|+||+|||+++..+|..+...+..+.++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 478999999999999999999987777667666554
No 466
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.11 E-value=0.028 Score=61.34 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhc---CCeEEEEeCCCccCCCCCCchh---h---hhHHHHHHHHHHHhccCC-CCcEEE--eccCCc---
Q 003859 465 QLKLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQE---Q---IHNSIVSTLLALMDGLDS-RGQVVL--IGATNR--- 529 (791)
Q Consensus 465 ~l~~lf~~a~~~---~p~VL~IDEiD~L~~~~~~~~~---~---~~~~v~~~Ll~~l~~~~~-~~~viv--Iattn~--- 529 (791)
.+..++.+.... .|.+|.||++..|+....-... . ..=.+...|+.++.+-.. .+..+| +++|..
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 344455554432 4778889999999865321111 1 112466666666443222 223333 444432
Q ss_pred hh--hhhhhhcCCCC------cc-------------ccccCCCCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcc
Q 003859 530 VD--AIDGALRRPGR------FD-------------REFNFPLPGCEARAEILDIHTRKWKQP---PSRELKSELAASCV 585 (791)
Q Consensus 530 ~~--~Ld~aL~r~gR------f~-------------~~I~~~~Pd~eer~~IL~~~l~~~~~~---~~~~~~~~LA~~t~ 585 (791)
+. .++.+|....- |. ..|.++..+.+|...+++.+....-+. .+....+.+.-.+
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s- 299 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS- 299 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-
Confidence 22 45555543111 11 257899999999999999888764332 3333434444333
Q ss_pred CCCHHHHH
Q 003859 586 GYCGADLK 593 (791)
Q Consensus 586 G~s~~di~ 593 (791)
|.+++++.
T Consensus 300 ~GNp~el~ 307 (309)
T PF10236_consen 300 NGNPRELE 307 (309)
T ss_pred CCCHHHhc
Confidence 44666654
No 467
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.11 E-value=0.0026 Score=64.75 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARALA 434 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA 434 (791)
+.++|+||.|+|||||.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 468
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.11 E-value=0.0018 Score=64.77 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+.+...+.|.||+|+|||||++.|+..+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666799999999999999999998753
No 469
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.10 E-value=0.0024 Score=76.06 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.2
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHH
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+..+||+||||||||++|+.+....
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3479999999999998888776543
No 470
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.09 E-value=0.0017 Score=76.85 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH----c
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY----M 728 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~----~ 728 (791)
+..+.++.+-+..+.++..|+..+.. +.....-++|+||||||||++++.++..+ .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------------------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------------------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------------------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 44566666667777777777655210 11111249999999999998887777643 2
Q ss_pred CchhHHHHH--------------------HHHHHHHHHhhhhh----------cCCceEEEEeCchhhccc
Q 003859 729 NWRNFLFIL--------------------LVFQLFFQILVPRH----------QRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 729 ~~~~~~l~~--------------------d~~e~~~~~~~~a~----------~~~P~ivfldeid~~a~~ 769 (791)
.|.++.... .-.+.|..++.++. .....||||||++.+.|.
T Consensus 140 Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r 210 (637)
T TIGR00602 140 EWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR 210 (637)
T ss_pred HHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh
Confidence 232222110 01244555555543 235789999999988874
No 471
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0011 Score=80.69 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=36.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+.+|.+|.|-+..+..+..++... +..-.+||+||+|||||++|..++..++
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~------------------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG------------------------RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------------------CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457888877766666666654431 0122589999999999988888877764
No 472
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.09 E-value=0.0039 Score=61.30 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
+..++|+||.|+|||+++++++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999998766643
No 473
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.09 E-value=0.00076 Score=76.56 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 661 CLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 661 gLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+...+..+...+.+.+ +.+.+....+... +-....+||+||||||||++|++++..+
T Consensus 6 ~~~~~i~~l~~~l~~~i--~gre~vI~lll~a-------alag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 6 LLAERISRLSSALEKGL--YERSHAIRLCLLA-------ALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHHHHhhhc--cCcHHHHHHHHHH-------HccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 34556667777777653 4455444444332 1113369999999999998887777654
No 474
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.09 E-value=0.0019 Score=72.83 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+.++++||||||||+++..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999988887654
No 475
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.00086 Score=76.93 Aligned_cols=52 Identities=17% Similarity=0.060 Sum_probs=34.1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+.+|.++.|-+..++.+..++... +.+..+||+||||||||++|..++..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~------------------------ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLN------------------------KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------------------CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 3457778777765555444443220 112379999999999998887776643
No 476
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.00076 Score=77.54 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=39.4
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCc---------hhHHHHHHHHHHHH----HHhhhhhcCCceEEEEeCchhhccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNW---------RNFLFILLVFQLFF----QILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~---------~~~~l~~d~~e~~~----~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
.++||||||||||+|+.+++..+... ....+...+...+. ..|....+ .+.+|+|||++.++..
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 59999999999999888887665321 11122222222111 12222332 5789999999988653
No 477
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.08 E-value=0.0052 Score=64.85 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
|+|+|+||+||||+|+.|+..+...+..+.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 78999999999999999999997655555444
No 478
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.08 E-value=0.0027 Score=77.18 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=58.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhhhHhHHHHHHHHHHHHHH-----hcCCeEEEEeCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVGEAERQLKLLFEEAQ-----RNQPSIIFFDEI 486 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~~~g~~~~~l~~lf~~a~-----~~~p~VL~IDEi 486 (791)
.-++|.|+||||||++++++...+...++.+.++...+. ..+....|.....+..++.... .....||||||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 458899999999999999999888776766665543332 1121111211122222211111 123579999999
Q ss_pred CccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 487 D~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
-.+- ...+..|+.... ....++|+|+=.+
T Consensus 449 sMv~-----------~~~~~~Ll~~~~--~~~~kliLVGD~~ 477 (744)
T TIGR02768 449 GMVG-----------SRQMARVLKEAE--EAGAKVVLVGDPE 477 (744)
T ss_pred ccCC-----------HHHHHHHHHHHH--hcCCEEEEECChH
Confidence 6552 334445555433 2345677777443
No 479
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.0027 Score=62.78 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+.+.--++|+||+|+|||||.+.|..+..
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 34455689999999999999999988763
No 480
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.07 E-value=0.012 Score=66.76 Aligned_cols=78 Identities=26% Similarity=0.279 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh-hcCCceEEEEEechhh-----hhhhHh-------------HHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYMRKGADV-----LSKWVG-------------EAERQLKLLFEE 472 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~i~~~~~-----~~~~~g-------------~~~~~l~~lf~~ 472 (791)
.|..++|+|++|+||||+|..||..+. ..+..+.++.++.... +..+.. .........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999875 4566777776663211 111100 011223445555
Q ss_pred HHhcCCeEEEEeCCCcc
Q 003859 473 AQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 473 a~~~~p~VL~IDEiD~L 489 (791)
+......+||||=.-.+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 55555679999977543
No 481
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0013 Score=77.95 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=39.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+..|.++.|-+..+..+..++... +..+.+||+||||||||++|..++..+..
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------------------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------------------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4467888888877776666664431 12447999999999999888888877653
No 482
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.06 E-value=0.0024 Score=77.29 Aligned_cols=103 Identities=27% Similarity=0.415 Sum_probs=58.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcC--CceEEEEEec--hhhhhhhHhHHHHHHHHHHHHH---------H-hcCCe
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKG--ADVLSKWVGEAERQLKLLFEEA---------Q-RNQPS 479 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~i~~--~~~~~~~~g~~~~~l~~lf~~a---------~-~~~p~ 479 (791)
..++|+|+||||||+++++|...+...+ ..+.+..-.+ +.-+....|.....+..++... . .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 3689999999999999999998887654 3333222221 1111111121122333333210 0 12356
Q ss_pred EEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 480 VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+|+|||+..+ ...++..|+..+ ....++++|+=.+..
T Consensus 419 llIvDEaSMv-----------d~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 419 LLIVDESSMM-----------DTWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEEeccccC-----------CHHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999999766 234455555543 345678888766553
No 483
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.05 E-value=0.0054 Score=74.52 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|.|.|||||||||+|+.||..++
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999985
No 484
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.05 E-value=0.0016 Score=62.12 Aligned_cols=23 Identities=48% Similarity=1.025 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 003859 416 VLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~ 438 (791)
|+|+|||||||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998874
No 485
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0015 Score=76.57 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.7
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+.+||+||||||||++|..++..++
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcc
Confidence 45899999999999988877777664
No 486
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.04 E-value=0.0031 Score=62.61 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+...+.|.||+|+|||||++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4556789999999999999999998753
No 487
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.04 E-value=0.0047 Score=62.96 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
....-++|+||.|+|||++++.|+..
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHH
Confidence 33456999999999999999999943
No 488
>PRK14532 adenylate kinase; Provisional
Probab=97.03 E-value=0.0044 Score=62.30 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~ 457 (791)
+|+|.||||+||||+|+.||+.++ +.+ ++..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-----~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-----MVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----CeE--EeCcHHHHH
Confidence 589999999999999999998874 333 445555544
No 489
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0022 Score=63.99 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+.+...+.|.||+|+|||||+++|+..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34556788999999999999999997653
No 490
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.03 E-value=0.0021 Score=71.32 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA 440 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (791)
.....++|+||+|+|||+|++.|++.+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 445669999999999999999999987654
No 491
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.02 E-value=0.005 Score=61.00 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTL-IARALACAA 437 (791)
Q Consensus 414 ~~vLL~GppGtGKT~-laralA~~l 437 (791)
.+++|.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 444444444
No 492
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.02 E-value=0.026 Score=63.27 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.|-|.+++|..+..++..-- ...+=..+-++.--+|||.|.|||.|+.|.+.+-+..
T Consensus 332 SIfG~~DiKkAiaClLFgGs-rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs 388 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGS-RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS 388 (729)
T ss_pred hhcCchhHHHHHHHHhhcCc-cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence 47889999888866553210 0011111122334589999999999999999886543
No 493
>PRK06921 hypothetical protein; Provisional
Probab=97.02 E-value=0.0013 Score=70.10 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+++|+||||||||+|+.+++..+.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Confidence 4799999999999999988877654
No 494
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.01 E-value=0.0023 Score=69.87 Aligned_cols=62 Identities=11% Similarity=-0.097 Sum_probs=33.7
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcC-c---hhHHHHHHHH-HHHHHHhhh-hhcCCceEEEEeCchhh
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMN-W---RNFLFILLVF-QLFFQILVP-RHQRRHWCIYLVKLEEQ 766 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~-~---~~~~l~~d~~-e~~~~~~~~-a~~~~P~ivfldeid~~ 766 (791)
.+||+||||||||+++.+++..... + .......+.. +.+...... .....+.||||||++.+
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 4666999999999888887765311 1 0000001111 111111111 11235889999999887
No 495
>PRK09183 transposase/IS protein; Provisional
Probab=97.01 E-value=0.00045 Score=73.34 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=37.5
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc--Cc-----hhHHHHHHHHHH-----HHHHhhhhhcCCceEEEEeCchhhc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM--NW-----RNFLFILLVFQL-----FFQILVPRHQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~--~~-----~~~~l~~d~~e~-----~~~~~~~a~~~~P~ivfldeid~~a 767 (791)
..++|+||||||||+|+.+++..+. +. ....+...+... +..+|... ...|.+|+|||+....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3799999999999998888765432 21 112222222111 12233332 2458899999997643
No 496
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0015 Score=77.52 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=37.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+.+|.++.|-+..+..+..++... +....+|||||||||||++|..++..+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------------------RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457888888877777666665431 0122579999999999988888887664
No 497
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.0016 Score=77.08 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=35.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
+-+|.+|.|-+..+..+...+... +.+..+||+||+|||||++|..++..+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------------------RLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 457788877776666555554330 1122579999999999988877776654
No 498
>PRK08118 topology modulation protein; Reviewed
Probab=97.00 E-value=0.00088 Score=66.27 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|+||||+||||||+.|+..++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999985
No 499
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0023 Score=73.91 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=37.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+..|.++.|....+..+..++... +.+..+|||||||||||++|+.++..+.
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~------------------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQ------------------------RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcC------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457788888887777776665441 0122589999999999988887777654
No 500
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0004 Score=76.06 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.4
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+++|+||||||||+|+.+++..+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 48999999999999999888876643
Done!