Query 003859
Match_columns 791
No_of_seqs 694 out of 3930
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:22:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 7.9E-61 2.7E-65 569.1 19.2 394 373-784 198-600 (806)
2 4b4t_J 26S protease regulatory 100.0 2.2E-44 7.5E-49 396.1 25.2 250 371-642 140-392 (405)
3 4b4t_I 26S protease regulatory 100.0 1.7E-43 5.9E-48 389.6 23.6 252 370-643 173-427 (437)
4 4b4t_M 26S protease regulatory 100.0 5.6E-43 1.9E-47 390.6 24.3 254 372-647 174-430 (434)
5 4b4t_L 26S protease subunit RP 100.0 8.1E-43 2.8E-47 389.6 24.3 250 372-643 174-426 (437)
6 4b4t_H 26S protease regulatory 100.0 1.2E-42 4.1E-47 386.5 25.2 249 371-641 201-452 (467)
7 4b4t_K 26S protease regulatory 100.0 1.2E-41 4E-46 379.8 23.8 247 371-639 164-414 (428)
8 1ypw_A Transitional endoplasmi 100.0 2.6E-42 8.8E-47 417.2 13.3 382 374-773 199-589 (806)
9 3cf2_A TER ATPase, transitiona 100.0 1.5E-39 5.1E-44 386.7 11.9 266 373-644 471-748 (806)
10 3hu3_A Transitional endoplasmi 100.0 2.5E-35 8.6E-40 336.6 21.6 284 374-663 199-483 (489)
11 2x8a_A Nuclear valosin-contain 100.0 3.9E-34 1.3E-38 304.0 21.5 261 374-645 5-270 (274)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.1E-33 3.7E-38 307.7 23.5 229 373-608 6-235 (322)
13 3eie_A Vacuolar protein sortin 100.0 2.2E-33 7.4E-38 305.4 22.6 265 371-643 10-302 (322)
14 3cf0_A Transitional endoplasmi 100.0 4.5E-33 1.5E-37 300.1 20.8 265 372-642 8-284 (301)
15 2qp9_X Vacuolar protein sortin 100.0 1.3E-32 4.5E-37 303.2 24.4 263 373-643 45-335 (355)
16 2zan_A Vacuolar protein sortin 100.0 8.1E-32 2.8E-36 305.4 21.3 228 373-607 128-356 (444)
17 3h4m_A Proteasome-activating n 100.0 6.6E-31 2.3E-35 280.1 23.1 264 372-657 10-276 (285)
18 2ce7_A Cell division protein F 100.0 9.2E-31 3.2E-35 296.6 24.4 246 374-642 11-259 (476)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.4E-30 8.1E-35 271.9 19.9 248 374-643 1-253 (262)
20 3d8b_A Fidgetin-like protein 1 100.0 1.3E-29 4.5E-34 279.5 22.9 258 374-643 79-338 (357)
21 3b9p_A CG5977-PA, isoform A; A 100.0 1.2E-29 4.1E-34 272.2 21.5 259 373-643 15-276 (297)
22 1lv7_A FTSH; alpha/beta domain 100.0 1.2E-29 3.9E-34 266.8 20.4 245 373-640 6-253 (257)
23 3vfd_A Spastin; ATPase, microt 100.0 5E-29 1.7E-33 278.1 22.5 259 372-642 108-368 (389)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 2.9E-29 9.8E-34 286.0 20.4 248 374-644 26-276 (499)
25 1ixz_A ATP-dependent metallopr 100.0 5.6E-28 1.9E-32 253.4 23.1 242 372-636 9-253 (254)
26 1ypw_A Transitional endoplasmi 99.9 2.5E-30 8.5E-35 312.6 -3.5 264 372-641 470-745 (806)
27 1iy2_A ATP-dependent metallopr 99.9 8.7E-27 3E-31 247.9 24.1 243 371-636 32-277 (278)
28 1r6b_X CLPA protein; AAA+, N-t 99.9 5.9E-27 2E-31 283.1 22.6 306 375-727 182-512 (758)
29 2r62_A Cell division protease 99.9 2.5E-29 8.6E-34 265.6 -0.5 250 373-645 5-259 (268)
30 3pxi_A Negative regulator of g 99.9 5.9E-27 2E-31 282.9 13.2 343 374-770 175-595 (758)
31 1qvr_A CLPB protein; coiled co 99.9 2.8E-26 9.6E-31 280.1 17.5 208 375-605 166-394 (854)
32 3t15_A Ribulose bisphosphate c 99.9 3.2E-23 1.1E-27 222.2 9.4 175 408-594 31-222 (293)
33 3syl_A Protein CBBX; photosynt 99.8 9.2E-21 3.1E-25 203.9 17.3 218 380-607 32-266 (309)
34 2c9o_A RUVB-like 1; hexameric 99.8 7.6E-20 2.6E-24 208.0 16.2 168 374-553 32-225 (456)
35 3uk6_A RUVB-like 2; hexameric 99.8 6.1E-19 2.1E-23 194.4 21.5 224 373-639 38-330 (368)
36 1ofh_A ATP-dependent HSL prote 99.8 3.8E-18 1.3E-22 182.9 14.6 244 380-640 16-300 (310)
37 3pfi_A Holliday junction ATP-d 99.8 2.8E-17 9.7E-22 179.1 21.6 215 374-639 24-254 (338)
38 2chg_A Replication factor C sm 99.8 4.1E-17 1.4E-21 165.0 21.0 211 374-637 12-224 (226)
39 2z4s_A Chromosomal replication 99.8 3.1E-17 1.1E-21 185.4 22.2 228 372-640 98-333 (440)
40 4b4t_J 26S protease regulatory 99.7 2.4E-19 8.2E-24 197.2 3.0 127 639-777 130-264 (405)
41 1l8q_A Chromosomal replication 99.7 1.8E-16 6.1E-21 171.9 22.2 225 373-640 5-241 (324)
42 3m6a_A ATP-dependent protease 99.7 5.7E-18 1.9E-22 196.3 10.5 231 376-639 78-341 (543)
43 1d2n_A N-ethylmaleimide-sensit 99.7 6E-17 2E-21 171.2 16.7 207 378-600 32-246 (272)
44 3bos_A Putative DNA replicatio 99.7 1.4E-16 4.8E-21 163.8 17.9 211 373-637 22-241 (242)
45 1hqc_A RUVB; extended AAA-ATPa 99.7 1E-16 3.5E-21 173.3 17.2 216 374-639 7-238 (324)
46 1njg_A DNA polymerase III subu 99.7 1.7E-16 6E-21 162.3 17.2 209 374-637 18-249 (250)
47 2v1u_A Cell division control p 99.7 5.6E-16 1.9E-20 171.0 22.4 232 374-639 14-276 (387)
48 3te6_A Regulatory protein SIR3 99.7 6.9E-17 2.4E-21 173.6 13.9 203 381-607 22-290 (318)
49 3hws_A ATP-dependent CLP prote 99.7 3.6E-17 1.2E-21 180.4 11.7 240 381-636 17-346 (363)
50 4b4t_I 26S protease regulatory 99.7 2.8E-18 9.7E-23 189.2 2.8 118 647-776 172-297 (437)
51 4b4t_L 26S protease subunit RP 99.7 3.1E-18 1.1E-22 191.3 2.9 125 641-777 165-297 (437)
52 3pvs_A Replication-associated 99.7 3.2E-16 1.1E-20 177.0 18.5 210 374-641 21-246 (447)
53 4b4t_H 26S protease regulatory 99.7 5.1E-18 1.7E-22 188.9 2.8 119 650-780 202-328 (467)
54 3pxg_A Negative regulator of g 99.7 9.3E-17 3.2E-21 183.0 12.9 195 374-606 175-388 (468)
55 4b4t_M 26S protease regulatory 99.7 4.6E-18 1.6E-22 189.8 1.7 124 641-776 165-296 (434)
56 1g41_A Heat shock protein HSLU 99.7 4.9E-16 1.7E-20 173.7 17.5 242 380-638 16-432 (444)
57 1jbk_A CLPB protein; beta barr 99.7 3.5E-16 1.2E-20 154.3 13.5 164 375-561 18-194 (195)
58 4b4t_K 26S protease regulatory 99.7 1.6E-17 5.5E-22 185.3 2.7 120 648-779 163-290 (428)
59 4fcw_A Chaperone protein CLPB; 99.6 1.2E-15 4.2E-20 163.8 15.6 209 379-606 17-281 (311)
60 1um8_A ATP-dependent CLP prote 99.6 1.4E-15 4.9E-20 168.4 15.8 241 380-638 22-364 (376)
61 1sxj_D Activator 1 41 kDa subu 99.6 2.4E-15 8.1E-20 164.3 17.0 218 373-637 31-261 (353)
62 1iqp_A RFCS; clamp loader, ext 99.6 4.1E-15 1.4E-19 160.4 18.6 196 373-600 19-216 (327)
63 1sxj_A Activator 1 95 kDa subu 99.6 7.4E-16 2.5E-20 177.8 13.1 196 372-586 32-243 (516)
64 2qby_B CDC6 homolog 3, cell di 99.6 2.9E-15 9.7E-20 165.6 17.1 221 377-640 18-271 (384)
65 3u61_B DNA polymerase accessor 99.6 4.2E-15 1.4E-19 161.0 17.1 187 373-599 20-219 (324)
66 2qby_A CDC6 homolog 1, cell di 99.6 8.4E-15 2.9E-19 161.3 18.7 231 374-640 15-273 (386)
67 2chq_A Replication factor C sm 99.6 2.3E-15 8E-20 161.7 13.6 195 373-599 11-207 (319)
68 1g8p_A Magnesium-chelatase 38 99.6 3.8E-15 1.3E-19 162.5 15.4 223 374-640 19-323 (350)
69 1sxj_B Activator 1 37 kDa subu 99.6 6.7E-15 2.3E-19 158.4 16.8 191 374-600 16-213 (323)
70 1in4_A RUVB, holliday junction 99.6 4.4E-14 1.5E-18 153.9 22.5 214 375-639 21-250 (334)
71 1fnn_A CDC6P, cell division co 99.6 4.3E-14 1.5E-18 156.2 22.3 228 374-640 12-275 (389)
72 2r44_A Uncharacterized protein 99.6 1.5E-14 5.2E-19 157.0 18.1 213 377-640 25-298 (331)
73 1jr3_A DNA polymerase III subu 99.6 1.1E-14 3.8E-19 160.2 16.8 192 374-600 11-225 (373)
74 3pxi_A Negative regulator of g 99.6 5.1E-15 1.7E-19 178.7 14.4 201 379-606 491-727 (758)
75 2p65_A Hypothetical protein PF 99.6 8.1E-15 2.8E-19 144.2 12.9 157 375-553 18-187 (187)
76 1r6b_X CLPA protein; AAA+, N-t 99.6 1.4E-14 4.8E-19 174.9 16.5 200 379-606 458-718 (758)
77 3cmw_A Protein RECA, recombina 99.6 1.1E-14 3.6E-19 184.4 15.4 156 374-530 1015-1218(1706)
78 3cmw_A Protein RECA, recombina 99.5 5.7E-16 2E-20 195.8 -0.5 83 409-491 728-824 (1706)
79 1sxj_E Activator 1 40 kDa subu 99.5 5.4E-14 1.8E-18 153.9 14.9 195 373-601 8-242 (354)
80 1sxj_C Activator 1 40 kDa subu 99.5 1.5E-13 5.2E-18 149.9 15.3 179 373-586 19-203 (340)
81 1qvr_A CLPB protein; coiled co 99.5 8.2E-14 2.8E-18 170.1 14.2 204 378-606 557-822 (854)
82 2bjv_A PSP operon transcriptio 99.5 2.1E-13 7E-18 143.3 13.9 199 376-603 3-240 (265)
83 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 9.1E-14 3.1E-18 158.5 10.2 200 380-611 23-274 (500)
84 4akg_A Glutathione S-transfera 99.4 3.9E-12 1.3E-16 167.7 23.5 139 412-568 1266-1434(2695)
85 1ojl_A Transcriptional regulat 99.4 4.2E-13 1.4E-17 144.2 9.5 195 380-603 3-235 (304)
86 3cf0_A Transitional endoplasmi 99.4 4.2E-13 1.4E-17 144.0 6.9 117 644-772 2-126 (301)
87 1w5s_A Origin recognition comp 99.3 1.9E-11 6.6E-16 136.0 19.0 233 375-639 18-293 (412)
88 1a5t_A Delta prime, HOLB; zinc 99.3 8.9E-12 3.1E-16 135.6 14.6 179 383-598 6-207 (334)
89 3f9v_A Minichromosome maintena 99.3 9.6E-14 3.3E-18 162.3 -3.1 225 379-640 295-588 (595)
90 3k1j_A LON protease, ATP-depen 99.3 1.4E-11 4.6E-16 144.8 13.9 207 374-608 36-360 (604)
91 1xwi_A SKD1 protein; VPS4B, AA 99.3 8E-13 2.7E-17 143.2 2.3 112 649-773 4-124 (322)
92 4akg_A Glutathione S-transfera 99.2 1.3E-10 4.6E-15 153.3 20.7 163 414-601 646-838 (2695)
93 3eie_A Vacuolar protein sortin 99.2 4E-12 1.4E-16 137.6 4.7 113 646-771 7-127 (322)
94 3co5_A Putative two-component 99.2 4.7E-12 1.6E-16 120.4 3.8 112 380-530 5-116 (143)
95 2gno_A DNA polymerase III, gam 99.2 5.8E-11 2E-15 127.4 12.7 147 383-565 1-152 (305)
96 2x8a_A Nuclear valosin-contain 99.2 1.2E-11 4.1E-16 130.8 6.9 110 650-771 3-120 (274)
97 3cmu_A Protein RECA, recombina 99.2 5.2E-11 1.8E-15 152.4 12.6 84 409-492 1077-1174(2050)
98 3n70_A Transport activator; si 99.2 2.3E-11 7.8E-16 115.9 6.6 115 380-530 2-116 (145)
99 2qp9_X Vacuolar protein sortin 99.2 1E-11 3.6E-16 136.2 4.0 113 646-771 40-160 (355)
100 2zan_A Vacuolar protein sortin 99.1 2.1E-11 7.3E-16 137.8 4.4 114 646-772 123-245 (444)
101 3h4m_A Proteasome-activating n 99.1 3.8E-11 1.3E-15 127.1 4.3 110 651-772 11-128 (285)
102 3hu3_A Transitional endoplasmi 99.1 8E-11 2.7E-15 134.3 5.9 109 652-772 199-315 (489)
103 2ce7_A Cell division protein F 99.0 9.8E-11 3.4E-15 132.6 4.7 107 652-771 11-125 (476)
104 2qen_A Walker-type ATPase; unk 99.0 1.9E-08 6.6E-13 108.7 21.6 192 374-597 7-247 (350)
105 2qz4_A Paraplegin; AAA+, SPG7, 99.0 1E-10 3.5E-15 121.9 2.7 107 652-771 1-115 (262)
106 3vfd_A Spastin; ATPase, microt 99.0 1.9E-10 6.5E-15 127.8 4.3 120 639-771 97-224 (389)
107 3vkg_A Dynein heavy chain, cyt 99.0 2.2E-08 7.6E-13 133.1 24.2 163 414-601 605-798 (3245)
108 3b9p_A CG5977-PA, isoform A; A 99.0 9E-11 3.1E-15 125.1 1.1 110 650-772 14-131 (297)
109 3ec2_A DNA replication protein 99.0 1.9E-09 6.5E-14 106.1 10.4 102 374-489 5-112 (180)
110 3vkg_A Dynein heavy chain, cyt 98.9 1.7E-08 6E-13 134.1 21.2 138 412-567 1303-1471(3245)
111 3d8b_A Fidgetin-like protein 1 98.9 2.5E-10 8.6E-15 125.3 2.0 108 651-771 78-193 (357)
112 1lv7_A FTSH; alpha/beta domain 98.9 3.9E-10 1.3E-14 117.6 2.0 107 652-771 7-121 (257)
113 2fna_A Conserved hypothetical 98.8 1.1E-07 3.7E-12 103.0 19.7 190 374-598 8-252 (357)
114 2r62_A Cell division protease 98.8 3.4E-10 1.2E-14 118.7 -0.4 107 651-770 5-119 (268)
115 3t15_A Ribulose bisphosphate c 98.8 1.7E-09 5.7E-14 115.5 5.0 71 701-772 34-117 (293)
116 2c9o_A RUVB-like 1; hexameric 98.8 9.1E-10 3.1E-14 124.9 3.1 104 652-775 32-147 (456)
117 1ixz_A ATP-dependent metallopr 98.8 4.2E-09 1.4E-13 109.6 7.3 111 648-771 7-125 (254)
118 3f8t_A Predicted ATPase involv 98.8 1.3E-08 4.3E-13 113.3 10.9 217 381-642 215-486 (506)
119 3kw6_A 26S protease regulatory 98.8 9.2E-09 3.1E-13 87.1 7.6 74 550-640 1-74 (78)
120 2krk_A 26S protease regulatory 98.8 5.9E-09 2E-13 89.9 6.4 78 548-642 7-84 (86)
121 2dhr_A FTSH; AAA+ protein, hex 98.8 1.9E-09 6.4E-14 122.8 3.7 107 652-771 26-140 (499)
122 2kjq_A DNAA-related protein; s 98.7 1.2E-08 4.3E-13 97.5 5.4 109 412-550 35-146 (149)
123 1iy2_A ATP-dependent metallopr 98.7 2.1E-08 7.3E-13 105.8 7.6 107 651-770 34-148 (278)
124 3dzd_A Transcriptional regulat 98.7 3.9E-08 1.3E-12 108.2 9.7 194 379-602 129-360 (368)
125 1ny5_A Transcriptional regulat 98.7 3.6E-08 1.2E-12 109.3 9.4 196 378-603 136-370 (387)
126 2w58_A DNAI, primosome compone 98.7 3.3E-08 1.1E-12 98.8 8.3 103 375-490 21-128 (202)
127 2vhj_A Ntpase P4, P4; non- hyd 98.6 9.7E-09 3.3E-13 109.5 3.5 121 410-536 120-241 (331)
128 3vlf_B 26S protease regulatory 98.6 4.6E-08 1.6E-12 84.7 6.9 76 553-645 2-77 (88)
129 3aji_B S6C, proteasome (prosom 98.5 8.5E-08 2.9E-12 82.1 5.1 75 553-644 2-76 (83)
130 2qgz_A Helicase loader, putati 98.4 1.1E-07 3.7E-12 102.1 5.5 101 375-489 120-226 (308)
131 3cmu_A Protein RECA, recombina 98.4 2.8E-07 9.7E-12 118.4 9.9 118 410-527 1424-1561(2050)
132 1jr3_D DNA polymerase III, del 98.4 2.4E-06 8.3E-11 92.7 15.8 162 412-600 17-189 (343)
133 3syl_A Protein CBBX; photosynt 98.4 9E-08 3.1E-12 102.2 3.4 100 658-770 32-146 (309)
134 3hws_A ATP-dependent CLP prote 98.3 1.4E-07 4.8E-12 103.5 3.3 68 703-770 51-132 (363)
135 1d2n_A N-ethylmaleimide-sensit 98.3 3E-07 1E-11 96.5 5.4 65 704-769 65-139 (272)
136 1tue_A Replication protein E1; 98.2 7.8E-07 2.7E-11 88.7 5.1 29 410-438 55-83 (212)
137 1jbk_A CLPB protein; beta barr 98.2 3.1E-06 1.1E-10 82.4 8.9 66 704-769 44-130 (195)
138 2r2a_A Uncharacterized protein 98.2 3.9E-07 1.3E-11 91.3 2.3 130 414-554 6-155 (199)
139 2dzn_B 26S protease regulatory 98.2 4.9E-07 1.7E-11 77.1 2.0 69 555-640 1-69 (82)
140 1svm_A Large T antigen; AAA+ f 98.1 1.7E-06 5.9E-11 95.0 6.2 119 409-551 165-284 (377)
141 3uk6_A RUVB-like 2; hexameric 98.1 2.1E-06 7.3E-11 93.8 6.8 25 704-728 71-95 (368)
142 2p65_A Hypothetical protein PF 98.1 3.1E-06 1.1E-10 82.3 7.2 67 703-769 43-130 (187)
143 3pfi_A Holliday junction ATP-d 98.0 1.7E-06 5.7E-11 93.6 3.7 94 653-770 25-122 (338)
144 1ye8_A Protein THEP1, hypothet 98.0 5.6E-05 1.9E-09 74.1 13.5 24 415-438 2-25 (178)
145 2chg_A Replication factor C sm 98.0 1E-05 3.5E-10 80.7 8.2 91 653-768 13-116 (226)
146 3te6_A Regulatory protein SIR3 98.0 1.1E-05 3.7E-10 86.5 8.6 67 703-769 45-147 (318)
147 4fcw_A Chaperone protein CLPB; 98.0 1.3E-06 4.5E-11 93.1 1.4 66 705-770 49-135 (311)
148 1sxj_A Activator 1 95 kDa subu 98.0 7.8E-06 2.7E-10 93.9 7.3 109 652-769 34-163 (516)
149 3n70_A Transport activator; si 97.9 1.7E-06 5.7E-11 82.0 1.2 63 705-771 26-93 (145)
150 3co5_A Putative two-component 97.9 9.4E-07 3.2E-11 83.5 -0.6 62 704-771 28-92 (143)
151 2w0m_A SSO2452; RECA, SSPF, un 97.9 2E-05 7E-10 79.6 9.2 41 409-449 19-59 (235)
152 1um8_A ATP-dependent CLP prote 97.9 6.7E-06 2.3E-10 90.4 5.3 66 703-769 72-152 (376)
153 3pvs_A Replication-associated 97.9 1.1E-05 3.8E-10 90.9 7.1 68 704-771 51-123 (447)
154 2z4s_A Chromosomal replication 97.9 6.3E-06 2.1E-10 92.8 4.8 65 704-768 131-208 (440)
155 1ofh_A ATP-dependent HSL prote 97.9 9.7E-06 3.3E-10 86.0 6.0 66 703-770 50-132 (310)
156 3m6a_A ATP-dependent protease 97.9 9.3E-06 3.2E-10 93.8 6.1 68 703-771 108-192 (543)
157 1njg_A DNA polymerase III subu 97.9 1.7E-05 5.8E-10 80.0 7.4 23 705-727 47-69 (250)
158 1z6t_A APAF-1, apoptotic prote 97.9 0.00018 6E-09 83.8 16.9 180 378-595 123-327 (591)
159 3hr8_A Protein RECA; alpha and 97.9 2.6E-05 9E-10 84.8 9.1 83 409-491 57-153 (356)
160 1u0j_A DNA replication protein 97.8 1.2E-05 4E-10 83.8 5.6 27 411-437 102-128 (267)
161 2a5y_B CED-4; apoptosis; HET: 97.8 0.00019 6.6E-09 82.9 15.1 172 382-588 131-330 (549)
162 1l8q_A Chromosomal replication 97.8 3.3E-05 1.1E-09 83.0 8.0 64 704-768 38-112 (324)
163 1g8p_A Magnesium-chelatase 38 97.8 7.2E-06 2.5E-10 88.8 2.7 24 705-728 47-70 (350)
164 3ec2_A DNA replication protein 97.8 3.3E-05 1.1E-09 75.4 7.3 60 704-765 39-111 (180)
165 2v1u_A Cell division control p 97.8 5.2E-05 1.8E-09 82.7 9.3 50 657-727 19-68 (387)
166 2bjv_A PSP operon transcriptio 97.7 3.6E-06 1.2E-10 87.7 -0.2 24 704-727 30-53 (265)
167 1n0w_A DNA repair protein RAD5 97.7 7.1E-05 2.4E-09 76.3 9.3 29 409-437 20-48 (243)
168 1xp8_A RECA protein, recombina 97.7 7.1E-05 2.4E-09 81.9 9.6 83 409-491 70-166 (366)
169 1iqp_A RFCS; clamp loader, ext 97.7 5.5E-05 1.9E-09 80.7 8.5 92 652-768 20-124 (327)
170 3u61_B DNA polymerase accessor 97.7 4.9E-05 1.7E-09 81.5 8.1 91 653-767 22-118 (324)
171 2zr9_A Protein RECA, recombina 97.7 3.1E-05 1.1E-09 84.3 6.5 83 409-491 57-153 (349)
172 3bos_A Putative DNA replicatio 97.7 8.6E-06 2.9E-10 82.7 1.4 65 703-769 52-119 (242)
173 1hqc_A RUVB; extended AAA-ATPa 97.7 1.1E-05 3.7E-10 86.4 1.8 93 654-769 9-105 (324)
174 2w58_A DNAI, primosome compone 97.7 4.3E-05 1.5E-09 76.0 6.0 25 704-728 55-79 (202)
175 3upu_A ATP-dependent DNA helic 97.6 6.1E-05 2.1E-09 85.2 7.5 55 374-442 19-74 (459)
176 1sxj_B Activator 1 37 kDa subu 97.6 1.8E-05 6.1E-10 84.3 2.7 64 705-768 44-121 (323)
177 2qby_B CDC6 homolog 3, cell di 97.6 0.0001 3.5E-09 80.6 8.6 50 657-727 20-69 (384)
178 1sxj_D Activator 1 41 kDa subu 97.6 3.7E-05 1.3E-09 83.1 4.8 24 704-727 59-82 (353)
179 1u94_A RECA protein, recombina 97.6 8.3E-05 2.8E-09 81.1 7.5 83 409-491 59-155 (356)
180 2chq_A Replication factor C sm 97.6 2.4E-05 8.3E-10 83.1 3.2 65 705-769 40-117 (319)
181 3sfz_A APAF-1, apoptotic pepti 97.6 0.00076 2.6E-08 85.0 17.1 179 378-595 123-327 (1249)
182 3pxg_A Negative regulator of g 97.6 4.9E-05 1.7E-09 86.2 5.3 59 703-761 201-274 (468)
183 3io5_A Recombination and repai 97.5 0.00019 6.6E-09 76.2 8.7 81 409-492 25-126 (333)
184 2dr3_A UPF0273 protein PH0284; 97.5 0.00039 1.3E-08 70.8 10.9 42 409-450 19-60 (247)
185 3dm5_A SRP54, signal recogniti 97.5 0.00043 1.5E-08 77.2 11.9 78 412-489 99-194 (443)
186 2ehv_A Hypothetical protein PH 97.5 0.00021 7.2E-09 73.0 8.7 28 409-436 26-53 (251)
187 2qby_A CDC6 homolog 1, cell di 97.5 6.8E-05 2.3E-09 81.7 5.2 24 704-727 46-69 (386)
188 2cvh_A DNA repair and recombin 97.5 8.2E-05 2.8E-09 74.6 5.3 38 409-449 16-53 (220)
189 2z43_A DNA repair and recombin 97.5 0.00011 3.8E-09 79.0 6.6 83 409-491 103-217 (324)
190 1sxj_C Activator 1 40 kDa subu 97.5 0.00025 8.4E-09 76.7 9.0 25 705-729 48-72 (340)
191 1v5w_A DMC1, meiotic recombina 97.5 0.00017 5.8E-09 78.3 7.8 83 409-491 118-233 (343)
192 1in4_A RUVB, holliday junction 97.4 0.0001 3.6E-09 79.6 5.9 61 704-770 52-118 (334)
193 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 6.9E-05 2.4E-09 85.3 4.3 24 704-727 42-65 (500)
194 1jr3_A DNA polymerase III subu 97.4 0.00013 4.5E-09 79.4 5.5 24 705-728 40-63 (373)
195 1ojl_A Transcriptional regulat 97.3 1.6E-05 5.6E-10 84.9 -1.9 23 704-726 26-48 (304)
196 2qgz_A Helicase loader, putati 97.3 4.8E-05 1.6E-09 81.4 1.6 26 703-728 152-177 (308)
197 1vma_A Cell division protein F 97.3 0.0024 8E-08 68.1 14.4 77 411-487 102-196 (306)
198 3kl4_A SRP54, signal recogniti 97.3 0.0014 4.7E-08 73.1 13.0 78 412-489 96-191 (433)
199 3lda_A DNA repair protein RAD5 97.3 0.00032 1.1E-08 77.6 7.6 29 409-437 174-202 (400)
200 2orw_A Thymidine kinase; TMTK, 97.3 0.00047 1.6E-08 67.9 7.9 34 414-447 4-37 (184)
201 1g5t_A COB(I)alamin adenosyltr 97.2 0.0021 7E-08 63.7 12.0 106 414-529 29-162 (196)
202 4a74_A DNA repair and recombin 97.2 0.0003 1E-08 70.9 6.2 29 409-437 21-49 (231)
203 2iut_A DNA translocase FTSK; n 97.2 0.0011 3.6E-08 76.1 10.8 139 413-562 214-420 (574)
204 1fnn_A CDC6P, cell division co 97.2 0.00044 1.5E-08 75.5 7.5 23 705-727 46-68 (389)
205 2r6a_A DNAB helicase, replicat 97.2 0.00067 2.3E-08 76.4 9.1 42 409-450 199-241 (454)
206 3jvv_A Twitching mobility prot 97.2 0.00036 1.2E-08 76.1 6.4 74 413-487 123-206 (356)
207 1nlf_A Regulatory protein REPA 97.2 0.0014 4.9E-08 68.6 10.7 31 409-439 26-56 (279)
208 1a5t_A Delta prime, HOLB; zinc 97.1 0.00043 1.5E-08 74.7 6.3 26 703-728 24-49 (334)
209 3e1s_A Exodeoxyribonuclease V, 97.1 0.00021 7.2E-09 82.9 3.8 35 414-448 205-239 (574)
210 3bh0_A DNAB-like replicative h 97.1 0.0017 5.9E-08 69.4 10.6 42 409-450 64-105 (315)
211 2eyu_A Twitching motility prot 97.1 0.00023 7.8E-09 74.2 3.5 77 411-487 23-108 (261)
212 1sxj_E Activator 1 40 kDa subu 97.1 0.00044 1.5E-08 74.8 5.5 23 705-727 38-60 (354)
213 1cr0_A DNA primase/helicase; R 97.0 0.002 6.8E-08 68.0 10.4 41 409-449 31-72 (296)
214 1pzn_A RAD51, DNA repair and r 97.0 0.00057 1.9E-08 74.3 6.2 29 409-437 127-155 (349)
215 2ius_A DNA translocase FTSK; n 97.0 0.0014 4.8E-08 74.5 9.3 74 479-562 299-374 (512)
216 2i1q_A DNA repair and recombin 97.0 0.0005 1.7E-08 73.7 5.4 29 409-437 94-122 (322)
217 1qhx_A CPT, protein (chloramph 97.0 0.0013 4.4E-08 63.5 7.9 26 413-438 3-28 (178)
218 2px0_A Flagellar biosynthesis 97.0 0.0096 3.3E-07 63.0 15.1 40 412-451 104-144 (296)
219 2b8t_A Thymidine kinase; deoxy 97.0 0.0012 4.1E-08 67.0 7.8 76 413-489 12-101 (223)
220 2kjq_A DNAA-related protein; s 97.0 5.4E-05 1.8E-09 72.0 -2.2 63 703-769 36-98 (149)
221 2q6t_A DNAB replication FORK h 97.0 0.0017 5.8E-08 72.9 9.5 42 409-450 196-238 (444)
222 2i3b_A HCR-ntpase, human cance 97.0 0.00085 2.9E-08 66.3 6.1 24 415-438 3-26 (189)
223 1vt4_I APAF-1 related killer D 96.9 0.0057 2E-07 74.4 14.1 44 381-436 130-173 (1221)
224 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00018 6E-09 76.8 1.1 64 705-771 125-199 (331)
225 2zts_A Putative uncharacterize 96.9 0.0023 7.8E-08 65.1 9.3 42 409-450 26-68 (251)
226 4gp7_A Metallophosphoesterase; 96.9 0.00023 8E-09 69.0 1.2 22 411-432 7-28 (171)
227 1tue_A Replication protein E1; 96.8 0.00054 1.8E-08 68.3 3.5 27 703-729 58-84 (212)
228 2r8r_A Sensor protein; KDPD, P 96.8 0.00099 3.4E-08 67.5 5.5 38 414-451 7-44 (228)
229 3l9o_A ATP-dependent RNA helic 96.8 0.013 4.5E-07 73.0 16.5 29 413-441 199-227 (1108)
230 3k1j_A LON protease, ATP-depen 96.8 0.0012 4E-08 77.2 6.2 23 705-727 62-84 (604)
231 3sr0_A Adenylate kinase; phosp 96.7 0.0043 1.5E-07 62.1 9.5 35 415-456 2-36 (206)
232 2fz4_A DNA repair protein RAD2 96.7 0.0036 1.2E-07 64.0 8.9 23 415-437 110-132 (237)
233 1q57_A DNA primase/helicase; d 96.7 0.0044 1.5E-07 70.7 10.4 43 409-451 238-281 (503)
234 2ewv_A Twitching motility prot 96.7 0.00042 1.4E-08 76.1 1.8 81 407-487 130-219 (372)
235 4g1u_C Hemin import ATP-bindin 96.7 0.0014 4.9E-08 68.3 5.8 27 411-437 35-61 (266)
236 3vaa_A Shikimate kinase, SK; s 96.7 0.00083 2.8E-08 66.6 3.8 28 411-438 23-50 (199)
237 3bgw_A DNAB-like replicative h 96.7 0.0073 2.5E-07 67.7 11.6 42 409-450 193-234 (444)
238 4gp7_A Metallophosphoesterase; 96.7 0.0018 6.1E-08 62.7 5.8 17 705-721 11-27 (171)
239 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0068 2.3E-07 62.8 10.6 30 413-442 4-33 (260)
240 1gvn_B Zeta; postsegregational 96.6 0.0046 1.6E-07 65.2 9.2 27 411-437 31-57 (287)
241 1kht_A Adenylate kinase; phosp 96.6 0.0017 5.8E-08 63.2 5.4 34 414-447 4-37 (192)
242 3trf_A Shikimate kinase, SK; a 96.6 0.00094 3.2E-08 65.0 3.5 26 413-438 5-30 (185)
243 2rhm_A Putative kinase; P-loop 96.6 0.0011 3.9E-08 64.7 4.1 29 410-438 2-30 (193)
244 1nks_A Adenylate kinase; therm 96.6 0.0015 5E-08 63.7 4.8 33 415-447 3-35 (194)
245 2gno_A DNA polymerase III, gam 96.6 0.0018 6.3E-08 68.9 5.9 67 703-769 18-97 (305)
246 1w5s_A Origin recognition comp 96.6 0.0034 1.1E-07 69.0 8.2 23 705-727 52-76 (412)
247 3umf_A Adenylate kinase; rossm 96.5 0.0034 1.2E-07 63.3 7.1 40 410-456 26-65 (217)
248 2xau_A PRE-mRNA-splicing facto 96.5 0.0086 3E-07 71.9 11.8 59 377-437 73-133 (773)
249 2gxq_A Heat resistant RNA depe 96.5 0.0092 3.2E-07 58.8 10.0 20 414-433 39-58 (207)
250 3e70_C DPA, signal recognition 96.5 0.014 4.9E-07 62.6 12.0 40 411-450 127-166 (328)
251 4a1f_A DNAB helicase, replicat 96.5 0.015 5E-07 62.7 11.9 43 409-451 42-84 (338)
252 3iij_A Coilin-interacting nucl 96.5 0.0018 6E-08 62.9 4.2 27 412-438 10-36 (180)
253 3tui_C Methionine import ATP-b 96.4 0.0041 1.4E-07 67.7 7.2 27 411-437 52-78 (366)
254 2yhs_A FTSY, cell division pro 96.4 0.031 1E-06 63.0 14.5 38 410-447 290-327 (503)
255 3llm_A ATP-dependent RNA helic 96.4 0.025 8.5E-07 57.4 12.6 24 413-436 76-99 (235)
256 2j37_W Signal recognition part 96.4 0.014 4.7E-07 66.3 11.6 40 412-451 100-139 (504)
257 1y63_A LMAJ004144AAA protein; 96.4 0.0021 7.3E-08 62.8 4.3 25 412-436 9-33 (184)
258 2p5t_B PEZT; postsegregational 96.4 0.0053 1.8E-07 63.3 7.6 28 411-438 30-57 (253)
259 1nn5_A Similar to deoxythymidy 96.4 0.0032 1.1E-07 62.6 5.6 35 411-445 7-41 (215)
260 1ls1_A Signal recognition part 96.4 0.038 1.3E-06 58.4 14.2 39 412-450 97-135 (295)
261 2qen_A Walker-type ATPase; unk 96.4 0.0042 1.4E-07 66.4 7.0 23 704-726 32-54 (350)
262 1qde_A EIF4A, translation init 96.3 0.013 4.6E-07 58.5 10.0 53 375-430 13-68 (224)
263 3f9v_A Minichromosome maintena 96.3 9.8E-05 3.4E-09 86.1 -6.7 23 705-727 329-351 (595)
264 3fb4_A Adenylate kinase; psych 96.3 0.0062 2.1E-07 60.8 7.4 24 415-438 2-25 (216)
265 1u0j_A DNA replication protein 96.3 0.0019 6.7E-08 67.0 3.7 24 703-726 104-127 (267)
266 3rlf_A Maltose/maltodextrin im 96.3 0.0045 1.5E-07 67.8 6.6 27 411-437 27-53 (381)
267 2yvu_A Probable adenylyl-sulfa 96.3 0.0042 1.4E-07 60.6 5.8 37 411-447 11-47 (186)
268 2r44_A Uncharacterized protein 96.3 0.0016 5.6E-08 69.7 3.1 23 705-727 48-70 (331)
269 1via_A Shikimate kinase; struc 96.3 0.0028 9.5E-08 61.2 4.4 24 415-438 6-29 (175)
270 3tif_A Uncharacterized ABC tra 96.3 0.0027 9.4E-08 64.9 4.5 28 410-437 28-55 (235)
271 1kag_A SKI, shikimate kinase I 96.3 0.002 6.8E-08 61.9 3.3 25 414-438 5-29 (173)
272 2wwf_A Thymidilate kinase, put 96.3 0.0043 1.5E-07 61.6 5.9 34 412-445 9-42 (212)
273 1g41_A Heat shock protein HSLU 96.3 0.00021 7.1E-09 79.9 -4.2 61 500-562 127-189 (444)
274 3uie_A Adenylyl-sulfate kinase 96.3 0.0043 1.5E-07 61.4 5.7 32 411-442 23-54 (200)
275 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0038 1.3E-07 67.8 5.6 27 411-437 28-54 (359)
276 3kb2_A SPBC2 prophage-derived 96.2 0.0022 7.6E-08 61.3 3.3 24 415-438 3-26 (173)
277 1zu4_A FTSY; GTPase, signal re 96.2 0.03 1E-06 59.9 12.3 41 411-451 103-143 (320)
278 2iyv_A Shikimate kinase, SK; t 96.2 0.0025 8.4E-08 62.0 3.5 24 415-438 4-27 (184)
279 3b6e_A Interferon-induced heli 96.2 0.01 3.5E-07 58.7 8.1 24 414-437 49-72 (216)
280 3thx_B DNA mismatch repair pro 96.2 0.016 5.6E-07 70.3 11.3 26 411-436 671-696 (918)
281 2xxa_A Signal recognition part 96.2 0.032 1.1E-06 62.2 12.7 76 412-487 99-193 (433)
282 2ffh_A Protein (FFH); SRP54, s 96.1 0.054 1.9E-06 60.1 14.3 40 412-451 97-136 (425)
283 1zuh_A Shikimate kinase; alpha 96.1 0.0028 9.6E-08 60.7 3.5 25 414-438 8-32 (168)
284 1vpl_A ABC transporter, ATP-bi 96.1 0.0054 1.9E-07 63.5 5.8 28 410-437 38-65 (256)
285 2ixe_A Antigen peptide transpo 96.1 0.0089 3E-07 62.4 7.5 28 410-437 42-69 (271)
286 2c95_A Adenylate kinase 1; tra 96.1 0.0029 9.8E-08 61.9 3.4 27 412-438 8-34 (196)
287 3gfo_A Cobalt import ATP-bindi 96.1 0.0036 1.2E-07 65.6 4.3 27 411-437 32-58 (275)
288 1w36_D RECD, exodeoxyribonucle 96.1 0.012 4.1E-07 68.7 9.2 26 414-439 165-190 (608)
289 3crm_A TRNA delta(2)-isopenten 96.1 0.0099 3.4E-07 63.5 7.7 101 414-530 6-107 (323)
290 3nh6_A ATP-binding cassette SU 96.1 0.006 2E-07 64.9 5.9 28 410-437 77-104 (306)
291 1tev_A UMP-CMP kinase; ploop, 96.0 0.0034 1.2E-07 61.1 3.7 26 413-438 3-28 (196)
292 1ly1_A Polynucleotide kinase; 96.0 0.0032 1.1E-07 60.6 3.3 22 414-435 3-24 (181)
293 3cm0_A Adenylate kinase; ATP-b 96.0 0.0031 1.1E-07 61.2 3.3 26 413-438 4-29 (186)
294 1z47_A CYSA, putative ABC-tran 96.0 0.0071 2.4E-07 65.6 6.3 27 411-437 39-65 (355)
295 2yyz_A Sugar ABC transporter, 96.0 0.0074 2.5E-07 65.6 6.5 27 411-437 27-53 (359)
296 1qf9_A UMP/CMP kinase, protein 96.0 0.0055 1.9E-07 59.6 4.9 26 413-438 6-31 (194)
297 1aky_A Adenylate kinase; ATP:A 96.0 0.005 1.7E-07 61.8 4.8 27 412-438 3-29 (220)
298 2plr_A DTMP kinase, probable t 96.0 0.0067 2.3E-07 60.0 5.6 29 413-441 4-32 (213)
299 1zp6_A Hypothetical protein AT 96.0 0.0035 1.2E-07 61.2 3.4 27 410-436 6-32 (191)
300 2olj_A Amino acid ABC transpor 96.0 0.011 3.6E-07 61.6 7.2 28 410-437 47-74 (263)
301 2cdn_A Adenylate kinase; phosp 96.0 0.0044 1.5E-07 61.3 4.1 27 412-438 19-45 (201)
302 1tf7_A KAIC; homohexamer, hexa 96.0 0.012 4.2E-07 67.3 8.5 82 409-490 277-384 (525)
303 1e6c_A Shikimate kinase; phosp 95.9 0.004 1.4E-07 59.6 3.7 24 415-438 4-27 (173)
304 2it1_A 362AA long hypothetical 95.9 0.0071 2.4E-07 65.8 6.0 27 411-437 27-53 (362)
305 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0084 2.9E-07 64.7 6.5 49 382-439 2-50 (359)
306 3bor_A Human initiation factor 95.9 0.021 7.3E-07 57.9 9.3 56 374-432 28-86 (237)
307 2bwj_A Adenylate kinase 5; pho 95.9 0.0043 1.5E-07 60.8 3.9 26 413-438 12-37 (199)
308 2pcj_A ABC transporter, lipopr 95.9 0.0049 1.7E-07 62.5 4.4 27 411-437 28-54 (224)
309 3t61_A Gluconokinase; PSI-biol 95.9 0.0044 1.5E-07 61.3 4.0 26 413-438 18-43 (202)
310 2ze6_A Isopentenyl transferase 95.9 0.0043 1.5E-07 64.1 3.9 32 415-451 3-34 (253)
311 1zd8_A GTP:AMP phosphotransfer 95.9 0.0035 1.2E-07 63.4 3.0 28 411-438 5-32 (227)
312 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0014 4.9E-08 70.6 0.1 73 412-487 170-250 (330)
313 2pl3_A Probable ATP-dependent 95.9 0.026 8.8E-07 57.0 9.5 55 375-432 24-81 (236)
314 3tlx_A Adenylate kinase 2; str 95.9 0.0048 1.6E-07 63.3 4.1 28 411-438 27-54 (243)
315 1zak_A Adenylate kinase; ATP:A 95.9 0.0044 1.5E-07 62.3 3.7 27 412-438 4-30 (222)
316 1hv8_A Putative ATP-dependent 95.8 0.024 8.3E-07 60.6 9.7 61 375-437 5-68 (367)
317 1vec_A ATP-dependent RNA helic 95.8 0.025 8.4E-07 55.7 9.0 18 414-431 41-58 (206)
318 1p9r_A General secretion pathw 95.8 0.01 3.6E-07 65.8 6.8 98 376-487 144-246 (418)
319 4eun_A Thermoresistant glucoki 95.8 0.0055 1.9E-07 60.6 4.0 27 412-438 28-54 (200)
320 1t6n_A Probable ATP-dependent 95.8 0.053 1.8E-06 53.9 11.5 61 375-437 13-75 (220)
321 1ak2_A Adenylate kinase isoenz 95.8 0.0073 2.5E-07 61.3 5.1 26 413-438 16-41 (233)
322 3d31_A Sulfate/molybdate ABC t 95.8 0.011 3.6E-07 64.1 6.6 27 411-437 24-50 (348)
323 1j8m_F SRP54, signal recogniti 95.8 0.073 2.5E-06 56.2 12.9 38 413-450 98-135 (297)
324 1g29_1 MALK, maltose transport 95.8 0.007 2.4E-07 66.2 5.0 27 411-437 27-53 (372)
325 3lw7_A Adenylate kinase relate 95.8 0.0053 1.8E-07 58.4 3.6 22 415-437 3-24 (179)
326 1knq_A Gluconate kinase; ALFA/ 95.8 0.0056 1.9E-07 58.9 3.8 26 413-438 8-33 (175)
327 3p32_A Probable GTPase RV1496/ 95.7 0.031 1.1E-06 60.6 10.1 39 412-450 78-116 (355)
328 1m7g_A Adenylylsulfate kinase; 95.7 0.0087 3E-07 59.7 5.3 36 411-446 23-59 (211)
329 2qor_A Guanylate kinase; phosp 95.7 0.005 1.7E-07 61.1 3.4 29 410-438 9-37 (204)
330 2bbw_A Adenylate kinase 4, AK4 95.7 0.0056 1.9E-07 62.7 3.9 27 412-438 26-52 (246)
331 2nq2_C Hypothetical ABC transp 95.7 0.0098 3.3E-07 61.5 5.7 27 411-437 29-55 (253)
332 1rz3_A Hypothetical protein rb 95.7 0.02 6.8E-07 56.6 7.7 37 411-447 20-56 (201)
333 3be4_A Adenylate kinase; malar 95.7 0.0064 2.2E-07 61.0 4.1 25 414-438 6-30 (217)
334 1oxx_K GLCV, glucose, ABC tran 95.7 0.0061 2.1E-07 66.2 4.1 27 411-437 29-55 (353)
335 2qi9_C Vitamin B12 import ATP- 95.7 0.0076 2.6E-07 62.1 4.6 27 411-437 24-50 (249)
336 2vli_A Antibiotic resistance p 95.7 0.0036 1.2E-07 60.5 2.1 26 413-438 5-30 (183)
337 3thx_A DNA mismatch repair pro 95.7 0.036 1.2E-06 67.5 11.1 24 413-436 662-685 (934)
338 2v3c_C SRP54, signal recogniti 95.6 0.019 6.5E-07 64.0 8.1 39 412-450 98-136 (432)
339 1v43_A Sugar-binding transport 95.6 0.0057 2E-07 66.8 3.8 27 411-437 35-61 (372)
340 3ber_A Probable ATP-dependent 95.6 0.024 8.3E-07 58.1 8.3 54 375-431 42-98 (249)
341 1tf7_A KAIC; homohexamer, hexa 95.6 0.032 1.1E-06 63.9 10.0 28 410-437 36-65 (525)
342 2z0h_A DTMP kinase, thymidylat 95.6 0.0099 3.4E-07 58.1 5.0 29 416-444 3-31 (197)
343 1ukz_A Uridylate kinase; trans 95.6 0.0057 2E-07 60.4 3.3 26 413-438 15-40 (203)
344 3b9q_A Chloroplast SRP recepto 95.6 0.018 6.3E-07 61.0 7.2 38 410-447 97-134 (302)
345 2pez_A Bifunctional 3'-phospho 95.6 0.012 4.1E-07 56.9 5.4 37 412-450 4-40 (179)
346 3c8u_A Fructokinase; YP_612366 95.5 0.01 3.5E-07 59.0 5.0 41 411-451 20-60 (208)
347 2pbr_A DTMP kinase, thymidylat 95.5 0.011 3.7E-07 57.5 5.0 27 415-441 2-28 (195)
348 3vaa_A Shikimate kinase, SK; s 95.5 0.0079 2.7E-07 59.4 3.9 25 703-727 25-49 (199)
349 1kgd_A CASK, peripheral plasma 95.5 0.0084 2.9E-07 58.3 4.0 25 413-437 5-29 (180)
350 2pt5_A Shikimate kinase, SK; a 95.4 0.0082 2.8E-07 57.1 3.7 24 415-438 2-25 (168)
351 3dl0_A Adenylate kinase; phosp 95.4 0.0057 1.9E-07 61.1 2.6 24 415-438 2-25 (216)
352 1cke_A CK, MSSA, protein (cyti 95.4 0.012 4.1E-07 59.0 5.0 25 414-438 6-30 (227)
353 2og2_A Putative signal recogni 95.4 0.02 6.8E-07 62.2 7.1 38 410-447 154-191 (359)
354 2j41_A Guanylate kinase; GMP, 95.4 0.0086 2.9E-07 59.0 3.9 27 411-437 4-30 (207)
355 3trf_A Shikimate kinase, SK; a 95.4 0.0087 3E-07 58.0 3.8 24 704-727 6-29 (185)
356 1np6_A Molybdopterin-guanine d 95.4 0.018 6.1E-07 55.9 6.0 40 413-452 6-45 (174)
357 2jaq_A Deoxyguanosine kinase; 95.4 0.0075 2.6E-07 59.2 3.3 24 415-438 2-25 (205)
358 3a8t_A Adenylate isopentenyltr 95.4 0.013 4.5E-07 62.9 5.3 26 413-438 40-65 (339)
359 3gmt_A Adenylate kinase; ssgci 95.4 0.027 9.2E-07 57.2 7.4 24 415-438 10-33 (230)
360 3iuy_A Probable ATP-dependent 95.3 0.056 1.9E-06 54.2 9.7 20 413-432 57-76 (228)
361 2fna_A Conserved hypothetical 95.3 0.0098 3.4E-07 63.6 4.3 24 704-727 31-54 (357)
362 2oxc_A Probable ATP-dependent 95.3 0.051 1.7E-06 54.7 9.4 55 374-431 22-79 (230)
363 2v54_A DTMP kinase, thymidylat 95.3 0.0077 2.6E-07 59.3 3.2 26 412-437 3-28 (204)
364 3kb2_A SPBC2 prophage-derived 95.3 0.0089 3.1E-07 56.9 3.5 23 705-727 3-25 (173)
365 3r20_A Cytidylate kinase; stru 95.3 0.013 4.5E-07 59.7 4.8 27 412-438 8-34 (233)
366 3fmo_B ATP-dependent RNA helic 95.3 0.04 1.4E-06 58.2 8.8 53 375-430 91-148 (300)
367 3fe2_A Probable ATP-dependent 95.3 0.062 2.1E-06 54.5 9.9 56 374-432 27-85 (242)
368 1s2m_A Putative ATP-dependent 95.3 0.054 1.8E-06 59.0 10.0 60 374-436 19-81 (400)
369 2rhm_A Putative kinase; P-loop 95.3 0.011 3.7E-07 57.6 4.0 23 705-727 7-29 (193)
370 3iij_A Coilin-interacting nucl 95.2 0.013 4.4E-07 56.6 4.3 24 704-727 12-35 (180)
371 3ice_A Transcription terminati 95.2 0.035 1.2E-06 60.5 8.0 37 411-447 172-208 (422)
372 1lvg_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 58.7 3.6 27 412-438 3-29 (198)
373 3umf_A Adenylate kinase; rossm 95.2 0.012 4.2E-07 59.3 4.2 29 699-727 25-53 (217)
374 1xjc_A MOBB protein homolog; s 95.2 0.021 7.3E-07 55.1 5.6 38 414-451 5-42 (169)
375 1ly1_A Polynucleotide kinase; 95.2 0.0095 3.2E-07 57.2 3.2 21 705-725 4-24 (181)
376 1qhx_A CPT, protein (chloramph 95.2 0.0091 3.1E-07 57.4 3.0 23 705-727 5-27 (178)
377 3tr0_A Guanylate kinase, GMP k 95.1 0.012 4.3E-07 57.8 4.0 27 411-437 5-31 (205)
378 3tau_A Guanylate kinase, GMP k 95.1 0.012 4.1E-07 58.7 3.8 27 412-438 7-33 (208)
379 1q0u_A Bstdead; DEAD protein, 95.1 0.056 1.9E-06 53.8 8.9 20 414-433 42-61 (219)
380 4b3f_X DNA-binding protein smu 95.1 0.057 2E-06 63.4 10.3 48 383-445 190-237 (646)
381 2qm8_A GTPase/ATPase; G protei 95.1 0.066 2.2E-06 57.6 9.9 41 411-451 53-93 (337)
382 1e4v_A Adenylate kinase; trans 95.1 0.011 3.7E-07 59.1 3.4 24 415-438 2-25 (214)
383 2grj_A Dephospho-COA kinase; T 95.1 0.024 8.4E-07 55.9 5.9 25 414-438 13-37 (192)
384 2xb4_A Adenylate kinase; ATP-b 95.0 0.011 3.9E-07 59.5 3.4 24 415-438 2-25 (223)
385 1nks_A Adenylate kinase; therm 95.0 0.012 4E-07 57.2 3.3 24 705-728 3-26 (194)
386 3foz_A TRNA delta(2)-isopenten 95.0 0.048 1.6E-06 57.7 8.2 123 413-560 10-133 (316)
387 3eiq_A Eukaryotic initiation f 95.0 0.032 1.1E-06 61.0 7.3 56 376-434 40-98 (414)
388 1kag_A SKI, shikimate kinase I 95.0 0.011 3.9E-07 56.4 3.2 23 705-727 6-28 (173)
389 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.3E-07 58.7 3.5 22 706-727 3-24 (206)
390 2j9r_A Thymidine kinase; TK1, 95.0 0.021 7.3E-07 57.2 5.1 34 415-448 30-63 (214)
391 1gtv_A TMK, thymidylate kinase 95.0 0.007 2.4E-07 60.1 1.6 27 415-441 2-28 (214)
392 1kht_A Adenylate kinase; phosp 95.0 0.013 4.4E-07 56.8 3.5 24 705-728 5-28 (192)
393 2bdt_A BH3686; alpha-beta prot 94.9 0.012 4.1E-07 57.3 3.2 23 415-437 4-26 (189)
394 1wb9_A DNA mismatch repair pro 94.9 0.097 3.3E-06 62.8 11.6 26 412-437 606-631 (800)
395 3nwj_A ATSK2; P loop, shikimat 94.9 0.019 6.6E-07 59.1 4.7 26 413-438 48-73 (250)
396 3dkp_A Probable ATP-dependent 94.9 0.097 3.3E-06 53.0 10.0 18 414-431 67-84 (245)
397 2o8b_B DNA mismatch repair pro 94.9 0.11 3.6E-06 64.1 12.0 23 413-435 789-811 (1022)
398 3pey_A ATP-dependent RNA helic 94.9 0.09 3.1E-06 56.7 10.3 59 376-435 5-66 (395)
399 3v9p_A DTMP kinase, thymidylat 94.9 0.068 2.3E-06 54.2 8.6 35 413-447 25-63 (227)
400 2j0s_A ATP-dependent RNA helic 94.9 0.089 3E-06 57.5 10.4 59 375-435 36-96 (410)
401 2if2_A Dephospho-COA kinase; a 94.9 0.011 3.9E-07 58.2 2.8 22 415-437 3-24 (204)
402 3lw7_A Adenylate kinase relate 94.9 0.014 4.8E-07 55.4 3.4 19 705-723 3-21 (179)
403 1htw_A HI0065; nucleotide-bind 94.8 0.015 5.3E-07 55.5 3.6 28 410-437 30-57 (158)
404 1y63_A LMAJ004144AAA protein; 94.8 0.016 5.6E-07 56.4 3.8 25 705-729 12-36 (184)
405 3exa_A TRNA delta(2)-isopenten 94.8 0.055 1.9E-06 57.4 8.1 103 414-532 4-107 (322)
406 3jvv_A Twitching mobility prot 94.8 0.0034 1.2E-07 68.3 -1.2 60 705-764 125-206 (356)
407 3ozx_A RNAse L inhibitor; ATP 94.8 0.025 8.5E-07 64.9 5.9 27 411-437 292-318 (538)
408 1via_A Shikimate kinase; struc 94.8 0.015 5.3E-07 55.8 3.5 23 705-727 6-28 (175)
409 3a00_A Guanylate kinase, GMP k 94.8 0.013 4.4E-07 57.2 3.0 25 414-438 2-26 (186)
410 4eaq_A DTMP kinase, thymidylat 94.8 0.029 9.8E-07 56.9 5.6 32 412-444 25-56 (229)
411 1wp9_A ATP-dependent RNA helic 94.7 0.12 4E-06 57.1 11.1 23 415-437 25-47 (494)
412 3eph_A TRNA isopentenyltransfe 94.7 0.037 1.3E-06 60.7 6.7 25 414-438 3-27 (409)
413 1rif_A DAR protein, DNA helica 94.7 0.088 3E-06 54.8 9.4 24 415-438 130-153 (282)
414 3ly5_A ATP-dependent RNA helic 94.7 0.04 1.4E-06 56.9 6.7 20 414-433 92-111 (262)
415 3asz_A Uridine kinase; cytidin 94.7 0.018 6.1E-07 57.1 3.8 27 412-438 5-31 (211)
416 1fuu_A Yeast initiation factor 94.7 0.062 2.1E-06 58.2 8.5 56 374-432 19-77 (394)
417 3ney_A 55 kDa erythrocyte memb 94.7 0.02 6.9E-07 56.7 4.1 27 412-438 18-44 (197)
418 1ex7_A Guanylate kinase; subst 94.7 0.017 5.9E-07 56.7 3.6 23 415-437 3-25 (186)
419 3b5x_A Lipid A export ATP-bind 94.7 0.073 2.5E-06 61.7 9.4 28 410-437 366-393 (582)
420 1sky_E F1-ATPase, F1-ATP synth 94.7 0.067 2.3E-06 59.9 8.7 27 413-439 151-177 (473)
421 2iyv_A Shikimate kinase, SK; t 94.7 0.019 6.5E-07 55.6 3.8 23 705-727 4-26 (184)
422 3cm0_A Adenylate kinase; ATP-b 94.7 0.017 5.9E-07 55.9 3.5 23 705-727 6-28 (186)
423 3t61_A Gluconokinase; PSI-biol 94.7 0.017 5.8E-07 56.9 3.5 23 705-727 20-42 (202)
424 1ye8_A Protein THEP1, hypothet 94.6 0.018 6.3E-07 56.0 3.5 23 705-727 2-24 (178)
425 2cdn_A Adenylate kinase; phosp 94.5 0.019 6.5E-07 56.5 3.5 23 705-727 22-44 (201)
426 1z6g_A Guanylate kinase; struc 94.5 0.019 6.6E-07 57.6 3.6 27 411-437 21-47 (218)
427 1gvn_B Zeta; postsegregational 94.5 0.028 9.4E-07 59.1 4.9 23 705-727 35-57 (287)
428 1tev_A UMP-CMP kinase; ploop, 94.5 0.02 6.8E-07 55.6 3.5 23 705-727 5-27 (196)
429 2p67_A LAO/AO transport system 94.5 0.096 3.3E-06 56.4 9.2 41 411-451 54-94 (341)
430 3fb4_A Adenylate kinase; psych 94.5 0.02 6.8E-07 57.0 3.5 22 706-727 3-24 (216)
431 2va8_A SSO2462, SKI2-type heli 94.5 0.13 4.4E-06 61.0 11.2 58 375-434 7-67 (715)
432 2v9p_A Replication protein E1; 94.5 0.024 8.2E-07 60.1 4.3 29 409-437 122-150 (305)
433 2ze6_A Isopentenyl transferase 94.5 0.019 6.7E-07 59.1 3.5 22 706-727 4-25 (253)
434 2plr_A DTMP kinase, probable t 94.4 0.021 7E-07 56.4 3.5 23 705-727 6-28 (213)
435 1rj9_A FTSY, signal recognitio 94.4 0.037 1.3E-06 58.7 5.6 37 412-448 101-137 (304)
436 3dl0_A Adenylate kinase; phosp 94.4 0.018 6.3E-07 57.3 3.1 22 706-727 3-24 (216)
437 1odf_A YGR205W, hypothetical 3 94.4 0.048 1.6E-06 57.4 6.4 29 411-439 29-57 (290)
438 2c95_A Adenylate kinase 1; tra 94.4 0.021 7.1E-07 55.7 3.4 23 705-727 11-33 (196)
439 1uj2_A Uridine-cytidine kinase 94.4 0.02 6.7E-07 58.9 3.3 28 412-439 21-48 (252)
440 3ake_A Cytidylate kinase; CMP 94.4 0.022 7.4E-07 56.1 3.5 24 415-438 4-27 (208)
441 2zr9_A Protein RECA, recombina 94.4 0.014 4.8E-07 63.3 2.3 23 705-727 63-85 (349)
442 1zp6_A Hypothetical protein AT 94.3 0.02 7E-07 55.6 3.2 22 705-726 11-32 (191)
443 1znw_A Guanylate kinase, GMP k 94.3 0.021 7.3E-07 56.6 3.4 27 411-437 18-44 (207)
444 1vht_A Dephospho-COA kinase; s 94.3 0.027 9.1E-07 56.2 4.1 23 413-435 4-26 (218)
445 1aky_A Adenylate kinase; ATP:A 94.3 0.025 8.6E-07 56.6 3.9 23 705-727 6-28 (220)
446 2bwj_A Adenylate kinase 5; pho 94.3 0.022 7.4E-07 55.7 3.4 23 705-727 14-36 (199)
447 3zvl_A Bifunctional polynucleo 94.3 0.036 1.2E-06 61.5 5.6 27 411-437 256-282 (416)
448 4e22_A Cytidylate kinase; P-lo 94.3 0.022 7.5E-07 58.6 3.6 26 413-438 27-52 (252)
449 4eun_A Thermoresistant glucoki 94.3 0.023 7.7E-07 56.1 3.5 23 705-727 31-53 (200)
450 4edh_A DTMP kinase, thymidylat 94.3 0.057 1.9E-06 54.1 6.4 35 413-447 6-40 (213)
451 1e6c_A Shikimate kinase; phosp 94.3 0.024 8.1E-07 54.1 3.5 23 705-727 4-26 (173)
452 1knq_A Gluconate kinase; ALFA/ 94.3 0.024 8.2E-07 54.4 3.5 23 705-727 10-32 (175)
453 1zak_A Adenylate kinase; ATP:A 94.3 0.026 8.9E-07 56.5 3.9 23 705-727 7-29 (222)
454 1ewq_A DNA mismatch repair pro 94.3 0.18 6.1E-06 60.2 11.6 25 413-437 576-600 (765)
455 1ak2_A Adenylate kinase isoenz 94.3 0.026 8.9E-07 57.1 3.9 23 705-727 18-40 (233)
456 1qf9_A UMP/CMP kinase, protein 94.3 0.023 8E-07 55.0 3.4 23 705-727 8-30 (194)
457 1zd8_A GTP:AMP phosphotransfer 94.3 0.021 7.2E-07 57.5 3.2 24 704-727 8-31 (227)
458 1uf9_A TT1252 protein; P-loop, 94.2 0.024 8.2E-07 55.6 3.5 25 412-436 7-31 (203)
459 2axn_A 6-phosphofructo-2-kinas 94.2 0.033 1.1E-06 63.7 5.1 37 412-448 34-70 (520)
460 3uie_A Adenylyl-sulfate kinase 94.2 0.024 8.3E-07 55.8 3.5 23 705-727 27-49 (200)
461 1a7j_A Phosphoribulokinase; tr 94.2 0.021 7E-07 60.3 3.1 35 414-448 6-40 (290)
462 3fmp_B ATP-dependent RNA helic 94.2 0.17 5.8E-06 56.8 10.9 53 375-430 91-148 (479)
463 1kgd_A CASK, peripheral plasma 94.2 0.021 7.2E-07 55.4 3.0 23 705-727 7-29 (180)
464 2qor_A Guanylate kinase; phosp 94.2 0.021 7.1E-07 56.6 3.0 23 705-727 14-36 (204)
465 1s96_A Guanylate kinase, GMP k 94.2 0.028 9.4E-07 56.7 3.9 29 410-438 13-41 (219)
466 2qt1_A Nicotinamide riboside k 94.2 0.025 8.5E-07 56.0 3.5 27 411-437 19-45 (207)
467 1nn5_A Similar to deoxythymidy 94.1 0.029 1E-06 55.4 3.9 23 705-727 11-33 (215)
468 1xti_A Probable ATP-dependent 94.1 0.31 1.1E-05 52.5 12.5 58 376-436 8-68 (391)
469 3d3q_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 60.2 4.1 34 414-452 8-41 (340)
470 2jeo_A Uridine-cytidine kinase 94.1 0.03 1E-06 57.2 3.9 29 411-439 23-51 (245)
471 2jaq_A Deoxyguanosine kinase; 94.1 0.027 9.3E-07 55.1 3.5 22 706-727 3-24 (205)
472 2vli_A Antibiotic resistance p 94.0 0.019 6.5E-07 55.3 2.3 22 705-726 7-28 (183)
473 3fht_A ATP-dependent RNA helic 94.0 0.12 4.1E-06 56.3 8.9 57 374-431 23-82 (412)
474 2p5t_B PEZT; postsegregational 94.0 0.044 1.5E-06 56.3 5.1 23 705-727 34-56 (253)
475 1ltq_A Polynucleotide kinase; 94.0 0.026 8.7E-07 59.4 3.3 24 414-437 3-26 (301)
476 1q3t_A Cytidylate kinase; nucl 94.0 0.043 1.5E-06 55.6 4.9 28 411-438 14-41 (236)
477 1jjv_A Dephospho-COA kinase; P 94.0 0.024 8.3E-07 56.0 3.0 21 415-435 4-24 (206)
478 1ny5_A Transcriptional regulat 94.0 0.052 1.8E-06 59.6 5.9 66 705-770 162-247 (387)
479 3qf4_A ABC transporter, ATP-bi 94.0 0.051 1.7E-06 63.1 6.1 28 410-437 366-393 (587)
480 3qf4_B Uncharacterized ABC tra 94.0 0.053 1.8E-06 63.1 6.2 28 410-437 378-405 (598)
481 2orv_A Thymidine kinase; TP4A 94.0 0.13 4.6E-06 51.9 8.3 35 414-448 20-54 (234)
482 3be4_A Adenylate kinase; malar 93.9 0.028 9.6E-07 56.2 3.4 23 705-727 7-29 (217)
483 4a82_A Cystic fibrosis transme 93.9 0.046 1.6E-06 63.4 5.6 28 410-437 364-391 (578)
484 2bdt_A BH3686; alpha-beta prot 93.9 0.028 9.5E-07 54.7 3.2 22 706-727 5-26 (189)
485 3lv8_A DTMP kinase, thymidylat 93.9 0.072 2.5E-06 54.3 6.4 32 412-443 26-57 (236)
486 3tlx_A Adenylate kinase 2; str 93.9 0.034 1.1E-06 56.9 3.9 23 705-727 31-53 (243)
487 4f4c_A Multidrug resistance pr 93.9 0.064 2.2E-06 68.2 7.2 27 411-437 442-468 (1321)
488 1e4v_A Adenylate kinase; trans 93.9 0.03 1E-06 55.8 3.4 23 705-727 2-24 (214)
489 2pt5_A Shikimate kinase, SK; a 93.9 0.032 1.1E-06 52.9 3.5 23 705-727 2-24 (168)
490 1zuh_A Shikimate kinase; alpha 93.9 0.033 1.1E-06 53.0 3.5 22 705-726 9-30 (168)
491 3ozx_A RNAse L inhibitor; ATP 93.9 0.095 3.2E-06 60.1 7.9 33 405-437 14-49 (538)
492 2xb4_A Adenylate kinase; ATP-b 93.8 0.032 1.1E-06 56.2 3.5 22 706-727 3-24 (223)
493 1sq5_A Pantothenate kinase; P- 93.8 0.053 1.8E-06 57.5 5.4 41 411-451 78-120 (308)
494 2h92_A Cytidylate kinase; ross 93.8 0.039 1.3E-06 54.9 4.1 25 414-438 4-28 (219)
495 3lnc_A Guanylate kinase, GMP k 93.8 0.02 7E-07 57.8 1.9 27 411-437 25-52 (231)
496 2f1r_A Molybdopterin-guanine d 93.8 0.043 1.5E-06 53.0 4.2 39 415-453 4-42 (171)
497 3tqc_A Pantothenate kinase; bi 93.8 0.068 2.3E-06 57.1 6.1 40 412-451 91-132 (321)
498 1ukz_A Uridylate kinase; trans 93.8 0.03 1E-06 55.1 3.1 23 705-727 17-39 (203)
499 3kjh_A CO dehydrogenase/acetyl 93.7 0.17 5.7E-06 51.1 8.8 147 416-564 3-175 (254)
500 2f6r_A COA synthase, bifunctio 93.7 0.035 1.2E-06 58.1 3.8 34 411-450 73-106 (281)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.9e-61 Score=569.13 Aligned_cols=394 Identities=34% Similarity=0.513 Sum_probs=332.4
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++++++.|+++|.+||.+|++|..+|+.+|+|||||||||||||+||++||++++ ++|+.+++.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~~~ 272 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGP 272 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEEHH
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEEhH
Confidence 368999999999999999999999999999999999999999999999999999999999999984 889999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhh
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~ 532 (791)
+++++|.|+++..++.+|..|..++||||||||||.|++.+.........+++++|+.+|+++....+|+||+|||+++.
T Consensus 273 ~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 273 EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp HHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred HhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999999988777777788999999999999988899999999999999
Q ss_pred hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCcc
Q 003859 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVY 612 (791)
Q Consensus 533 Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~ 612 (791)
||++|+|+|||+..|+|+.|+..+|.+||+.++.++....+.++ ..||..|.||+++||.+||++|++.|+++....+.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl-~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH-HHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999998877666555 78999999999999999999999999988654333
Q ss_pred CCCcccc-ccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhh
Q 003859 613 TSDDKFL-IDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCM 691 (791)
Q Consensus 613 ~~~~~~~-~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~ 691 (791)
....... .......|+.+||..|+..++|+..+...+..+.+.|.+|+||....+++.+.+.. |+.+++.|.++|+
T Consensus 432 ~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~---p~~~p~~f~~~g~ 508 (806)
T 3cf2_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGM 508 (806)
T ss_dssp GTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT---TTTCSGGGSSSCC
T ss_pred ccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh---hhhCHHHHHhcCC
Confidence 2221111 11245679999999999999999999999999999999999998888887777555 8888888877654
Q ss_pred hccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH----cCchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCc
Q 003859 692 LSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY----MNWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKL 763 (791)
Q Consensus 692 ~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~----~~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldei 763 (791)
+++.|+|||||||||||++|++++..+ +.+..+.+...+. ++++++|..|++.+|||||||||
T Consensus 509 ---------~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 509 ---------TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp ---------CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred ---------CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhh
Confidence 446699999999999996666666542 3345555544443 77889999999999999999999
Q ss_pred hhhcccccccccccccccccc
Q 003859 764 EEQRHQYSIYHSSIFGGRTHM 784 (791)
Q Consensus 764 d~~a~~~~~~~~~~~~~~~~~ 784 (791)
|+++..|+......++..+++
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv 600 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRV 600 (806)
T ss_dssp GGCC--------------CHH
T ss_pred hHHhhccCCCCCCCchHHHHH
Confidence 999999976655555555444
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-44 Score=396.09 Aligned_cols=250 Identities=39% Similarity=0.669 Sum_probs=230.3
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...|.++|++|+|++++|++|+++|.+|+.+|++|..+|+.+|+|||||||||||||+||++||++++ ++|+.++
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~ 214 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVS 214 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEE
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999995 8999999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++.+.++|+|+++..++.+|..|+..+||||||||||.+++.+.... .....+++.+||..|+++.....|+||+||
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 99999999999999999999999999999999999999998875432 234567899999999999999999999999
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|+|+.||+||+|||||+..|+|++|+.++|.+||+.++.++.+..+.++ ..||..|.||||+||.+||++|++.|+++.
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl-~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL-RKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH-HHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999877666554 789999999999999999999999999864
Q ss_pred CCCccCCCccccccccccceeHHHHHHHhcccccc
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 642 (791)
. ..|+++||..|+..+.+.
T Consensus 374 ~----------------~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 374 R----------------IHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp C----------------SBCCHHHHHHHHHHHHHH
T ss_pred C----------------CCcCHHHHHHHHHHHhCc
Confidence 3 358999999999877654
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-43 Score=389.56 Aligned_cols=252 Identities=37% Similarity=0.636 Sum_probs=231.0
Q ss_pred cccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 370 ~~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
+...|.++|++|+|++++|+.|++.|.+|+.+|++|..+|+.+|+|||||||||||||+||++||.+++ ++|+.+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v 247 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRI 247 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEE
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred echhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+++++.++|+|+++..++.+|..|...+||||||||+|.+++.+.... .....+++.+||+.|+++.....|+||+|
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999874432 23456788899999999988999999999
Q ss_pred CCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 527 tn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
||+++.||+||+|||||+..|+|++|+.++|.+||+.++.++.+..+.++ +.||..|.||||+||.+||.+|++.|+++
T Consensus 328 TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl-~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 328 TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL-ETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH-HHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH-HHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999877655554 78999999999999999999999999987
Q ss_pred hCCCccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
.. ..|+++||..|+..+.+..
T Consensus 407 ~~----------------~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 407 RR----------------MQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp TC----------------SCBCHHHHHHHHHHHHHHH
T ss_pred CC----------------CccCHHHHHHHHHHHhCCC
Confidence 43 2489999999998876643
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-43 Score=390.64 Aligned_cols=254 Identities=35% Similarity=0.604 Sum_probs=233.3
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.++|++|+|++++|+.|++.|.+|+.+|++|..+|+.+|+|||||||||||||+||++||.+++ ++|+.+++
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~ 248 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAA 248 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEeh
Confidence 4589999999999999999999999999999999999999999999999999999999999999995 89999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchh---hhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE---QIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~---~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+.+.++|+|+++..++.+|..|...+||||||||+|.|++.+..... .....++..||+.|+++....+|+||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988755433 234567889999999999889999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
+|+.||+||+|||||+..|+|++|+.++|.+||+.++..+....+.++ ..||..|.||||+||.+||.+|++.|+++..
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl-~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW-QELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH-HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH-HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999877666554 7899999999999999999999999998743
Q ss_pred CCccCCCccccccccccceeHHHHHHHhcccccccccCc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGA 647 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~ 647 (791)
..|+.+||..|+..+.|...+.+
T Consensus 408 ----------------~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 408 ----------------SSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp ----------------SSBCHHHHHHHHHSCSSSCCCCC
T ss_pred ----------------CCcCHHHHHHHHHHHhCCCCcCc
Confidence 24899999999999988765443
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-43 Score=389.65 Aligned_cols=250 Identities=37% Similarity=0.648 Sum_probs=230.1
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|.++|++|+|++++|+.|+++|.+|+.+|++|..+|+.+|+|||||||||||||+||++||++++ ++|+.+++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~ 248 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPA 248 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 4589999999999999999999999999999999999999999999999999999999999999995 89999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+.+.++|+|+++..++.+|..|...+||||||||+|.+++.+...+ ......++.+||..|+++.....|+||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 9999999999999999999999999999999999999998874432 2345678899999999999989999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
+|+.||++|+|||||+..|+|++|+.++|.+||+.++.++....+.++ ..||..|.||||+||.+||.+|++.|+++..
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl-~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF-EAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH-HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH-HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999877665554 7899999999999999999999999998643
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
. .|+.+||..|+..+.+..
T Consensus 408 ~----------------~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 408 D----------------HINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp S----------------SBCHHHHHHHHHHHHHTC
T ss_pred C----------------CCCHHHHHHHHHHHHhcc
Confidence 2 489999999998877643
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=386.46 Aligned_cols=249 Identities=37% Similarity=0.668 Sum_probs=228.8
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...|.++|+||+|++++|+.|+++|.+|+.+|++|..+|+.+|+|||||||||||||+||++||++++ ++|+.++
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs 275 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVI 275 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEE
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEE
Confidence 34588999999999999999999999999999999999999999999999999999999999999995 8999999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++.+.++|+|+++..++.+|..|+..+||||||||+|.++..+.... ......++..||..|+++.....|+||+||
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999998875432 234557888999999999889999999999
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|+++.||++|+|||||+..|+|++|+.++|.+||+.++..+.+..+.++ ..||..|.||||+||.+||++|++.|+++.
T Consensus 356 Nrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl-~~LA~~T~GfSGADI~~l~~eAa~~Air~~ 434 (467)
T 4b4t_H 356 NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW-ELISRLCPNSTGAELRSVCTEAGMFAIRAR 434 (467)
T ss_dssp SCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH-HHHHHHCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999877666555 789999999999999999999999999875
Q ss_pred CCCccCCCccccccccccceeHHHHHHHhccccc
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
.. .|+.+||..|+..+.+
T Consensus 435 ~~----------------~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 435 RK----------------VATEKDFLKAVDKVIS 452 (467)
T ss_dssp CS----------------SBCHHHHHHHHHHHHH
T ss_pred CC----------------ccCHHHHHHHHHHHhc
Confidence 32 4899999999987654
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=379.78 Aligned_cols=247 Identities=36% Similarity=0.597 Sum_probs=227.2
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...|.++|+||+|++++|+.|++.+.+|+.+|++|..+|+.+|+|||||||||||||+||++||++++ ++|+.++
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~ 238 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVN 238 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEE
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEe
Confidence 34589999999999999999999999999999999999999999999999999999999999999995 8999999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
++.+.++|+|+++..++.+|..|+..+||||||||+|.+++.+... ......+++.+||+.|+++....+|+||+||
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999887432 2334578999999999999999999999999
Q ss_pred CchhhhhhhhcCCCCccccccCC-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFP-LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~-~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~ 606 (791)
|+++.||++|+|||||+..|+|| +|+..+|..||+.++.++.+..+.++ ..||..|.||||+||.++|++|++.|+++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl-~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL-DSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH-HHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999997 89999999999999999877655554 89999999999999999999999999987
Q ss_pred hCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
.. ..|+++||..|+...
T Consensus 398 ~~----------------~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 398 NR----------------YVILQSDLEEAYATQ 414 (428)
T ss_dssp TC----------------SSBCHHHHHHHHHHH
T ss_pred CC----------------CCCCHHHHHHHHHHh
Confidence 43 248999999998764
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.6e-42 Score=417.18 Aligned_cols=382 Identities=34% Similarity=0.518 Sum_probs=314.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++|++|+|++.+++.|.+++..|+.++++|..+++.++.+|||+||||||||+||++||..++ ..++.+++..
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~~ 273 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEchH
Confidence 57899999999999999999999999999999999999999999999999999999999999873 6789999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
+...+.+.....+..+|..+....|+||||||+|.+++.+..........++..|+.+++++.....++||++||.++.+
T Consensus 274 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999999998776655666788999999999998888899999999999999
Q ss_pred hhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccC
Q 003859 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~ 613 (791)
++++.+++||...+.++.|+.++|.+||+.++..+.+..+..+ ..++..+.||+++++..+|.+|+..++++....+..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l-~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT-HHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh-HHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 9999999999999999999999999999999988776544444 689999999999999999999999998876543322
Q ss_pred CCccc-cccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhh
Q 003859 614 SDDKF-LIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (791)
Q Consensus 614 ~~~~~-~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~ 692 (791)
..... ........++..+|..++....+...+......+.+.|.+++|+....+.+.+.+.. |+.++..|.++
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~---~~~~~~~~~~~--- 506 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKF--- 506 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTS---SSSSCTTTTCC---
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHh---hhhchHHHHhc---
Confidence 11100 011234568889999999999998888888888999999999997777666665433 55555544443
Q ss_pred ccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC----chhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCch
Q 003859 693 SHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN----WRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLE 764 (791)
Q Consensus 693 ~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~----~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid 764 (791)
++.++.++||+||||||||++|++++..+-. +....+.. .....+..+|..++...||||||||||
T Consensus 507 ------~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid 580 (806)
T 1ypw_A 507 ------GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ------CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHH
T ss_pred ------CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChh
Confidence 3344558999999999999888888876421 11111111 111456677788888889999999999
Q ss_pred hhccccccc
Q 003859 765 EQRHQYSIY 773 (791)
Q Consensus 765 ~~a~~~~~~ 773 (791)
.++..+...
T Consensus 581 ~l~~~r~~~ 589 (806)
T 1ypw_A 581 SIAKARGGN 589 (806)
T ss_dssp HHCCTTTTC
T ss_pred hhhhhccCC
Confidence 999877543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-39 Score=386.71 Aligned_cols=266 Identities=35% Similarity=0.626 Sum_probs=195.5
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++++++.|++++.+|+.+|++|.++|+.++++||||||||||||++|++||.+++ .+|+.++++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~-----~~f~~v~~~ 545 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGP 545 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT-----CEEEECCHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC-----CceEEeccc
Confidence 478999999999999999999999999999999999999999999999999999999999999984 899999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
+++++|+|++++.++.+|..|+..+||||||||||.|++.++.. ......+++++||.+|+++.....|+||+|||+
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~ 625 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CC
T ss_pred hhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887532 334567899999999999999999999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
|+.||++|+|||||+..|+|++|+.++|.+||+.++.+..+..+.++ ..||..|.||||+||.++|++|++.|+++...
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl-~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-EFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------CHHHHHHHHHHHHHHHHHC
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH-HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877766665 78999999999999999999999999987543
Q ss_pred CccCCCc---------cccccccccceeHHHHHHHhcccccccc
Q 003859 610 QVYTSDD---------KFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (791)
Q Consensus 610 ~~~~~~~---------~~~~~~~~~~lt~~df~~Al~~~~p~~~ 644 (791)
....... ..........|+++||..|+..++|+..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp -----------------------CCC----CCTTTC--------
T ss_pred hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 2111000 0001112346999999999999988643
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.5e-35 Score=336.57 Aligned_cols=284 Identities=42% Similarity=0.677 Sum_probs=241.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
..++|++|+|++.+++.|.+++..++.++++|..+|..++.+||||||||||||++|++||..+ ..+|+.+++..
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn~~~ 273 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE 273 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEEHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEEchH
Confidence 4678999999999999999999999999999999999999999999999999999999999987 47899999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
+.+.++|.....++.+|..+....|+||||||||.|++.++.........++..|+..|+++.....++||+|||.++.|
T Consensus 274 l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 99999999999999999999999999999999999998876666667788999999999988888899999999999999
Q ss_pred hhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccC
Q 003859 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~ 613 (791)
+++++++|||...|+|++|+.++|.+||+.++.......+.++ ..+|..+.||++++|.+||.+|+..|+++....+..
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l-~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH-HHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999998776655444 789999999999999999999999999987654433
Q ss_pred CCcccc-ccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHH
Q 003859 614 SDDKFL-IDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQ 663 (791)
Q Consensus 614 ~~~~~~-~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk 663 (791)
...... .......|+++||..|+..+.|+..+.+.+..|+++|+||||-.
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 322111 11234569999999999999999999999999999999999974
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=304.02 Aligned_cols=261 Identities=37% Similarity=0.624 Sum_probs=208.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
|.++|++|+|++++++.|.+.+.+|+.++.+|..+++..+.|+||+||||||||+|+++||..++ ..++.+++..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~ 79 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPE 79 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHH
Confidence 68999999999999999999999999999999999999999999999999999999999999874 5688899998
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~L 533 (791)
+...+.+.....+..+|..+....|+|+|+||+|.++..+.........++++.++..|++......++++++||.|+.|
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 88888898999999999999888999999999999886543322223456788999999998888889999999999999
Q ss_pred hhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---KQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 534 d~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~---~~~~~~~~~~~LA~~--t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
|++++|+|||+..|+|++|+.++|.+||+.++... ....+.+ +..||.. |.|||++||.+||++|+..|+++..
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN-LEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCC-HHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccC-HHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998652 2222333 4678876 4599999999999999999998754
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccccccccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHR 645 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r 645 (791)
...... .......|+++||..|+..++|+...
T Consensus 239 ~~~~~~-----~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 239 ARQKSG-----NEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ----------------CCBCHHHHHHHHTTCCCCC--
T ss_pred hhcccc-----ccccCCeecHHHHHHHHHHhcCCCCh
Confidence 321110 11234579999999999999987644
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=307.74 Aligned_cols=229 Identities=37% Similarity=0.644 Sum_probs=208.8
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++.+++.|++++.+|+.++++|... ..++++||||||||||||+||++||+++. ...|+.+++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 478999999999999999999999999999999853 56779999999999999999999999873 3688899999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-CCcEEEeccCCchh
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~-~~~vivIattn~~~ 531 (791)
.+...+.|..+..++.+|..+....|+||||||+|.+++.+.........++++.|+..|+++.. ...++||+|||.++
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999999887666566677899999999998753 67899999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.|+++|+| ||+..|+|++|+.++|..||+.++......++...+..||..|.||+++||.+||++|+..|+++..
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887777778889999999999999999999999999998753
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.2e-33 Score=305.43 Aligned_cols=265 Identities=32% Similarity=0.572 Sum_probs=225.8
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...+.++|++|+|++.+++.|++++.+|+.++.+|.. +..++.+||||||||||||+||++||++++ .+|+.++
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~ 83 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVS 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEE
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEc
Confidence 3457899999999999999999999999999999887 457788999999999999999999999984 7899999
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-CCCcEEEeccCCc
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNR 529 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-~~~~vivIattn~ 529 (791)
+..+.+.+++.....++.+|..+....|+||||||||.|.+.+..........++..|+..|+++. ....++||+|||.
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999999999999999999999999999999999999987765555567788999999999874 5678999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
++.|+++|++ ||+..|+|++|+.++|.+||+.++......++...+..||..+.||++++|.+||+.|+..|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999999999999999998887778888899999999999999999999999999987643
Q ss_pred CccCCCc---------------------------cccccccccceeHHHHHHHhccccccc
Q 003859 610 QVYTSDD---------------------------KFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 610 ~~~~~~~---------------------------~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
.+..... ..........|+.+||..|+..++|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 2110000 000011235699999999999998864
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.5e-33 Score=300.08 Aligned_cols=265 Identities=35% Similarity=0.634 Sum_probs=222.3
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|++|+|++.+++.|++++.+|+.+++.|..+++.++.+||||||||||||+||++||..++ ..|+.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEh
Confidence 3478999999999999999999999999999999999999999999999999999999999999884 78999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...++|.....++.+|..+....|+||||||+|.|.+.++.. .......++..|+..|+++....+++||+|||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 999999999988899999999999999999999999987643221 12234578889999999887778899999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.++.|+++++++|||+..|+|++|+.++|.+||+.++.......+.++ ..||..+.||+++||.++|++|+..|+.+..
T Consensus 163 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~-~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-EFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH-HHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765544443 6899999999999999999999999987643
Q ss_pred CCccCC-Cc-----c-ccc--cccccceeHHHHHHHhcccccc
Q 003859 609 PQVYTS-DD-----K-FLI--DVDSVTVEKYHFIEAMSTITPA 642 (791)
Q Consensus 609 ~~~~~~-~~-----~-~~~--~~~~~~lt~~df~~Al~~~~p~ 642 (791)
...... .. . ... ......|+.+||..|+....|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 110000 00 0 000 0112469999999999998874
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.3e-32 Score=303.19 Aligned_cols=263 Identities=33% Similarity=0.598 Sum_probs=217.3
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++.+++.|.+++.+|+.++.+|.. +..++.+||||||||||||+||++||++++ .+|+.+++.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~~ 118 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSS 118 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 36789999999999999999999999999999987 457788999999999999999999999994 789999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-CCcEEEeccCCchh
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~-~~~vivIattn~~~ 531 (791)
.+...+++.....++.+|..+....|+||||||+|.|.+.+..........++..|+..|+++.. ...++||++||.++
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999999876555555677889999999998754 56899999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
.|++++++ ||+..|+|++|+.++|..||+.++......++...+..||..+.||++++|.+||++|++.|+++.....
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999999999999999887767777789999999999999999999999999998743210
Q ss_pred c-----CC-------------C---------ccccccccccceeHHHHHHHhccccccc
Q 003859 612 Y-----TS-------------D---------DKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 612 ~-----~~-------------~---------~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
. .. + ...........|+++||..|+..++|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 0 00 0 0000011235699999999999998863
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.98 E-value=8.1e-32 Score=305.39 Aligned_cols=228 Identities=37% Similarity=0.654 Sum_probs=197.8
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++.+++.|.+++.+|+.++.+|... ..++.+||||||||||||+||++||.++. ...|+.+++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~ 202 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 202 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHH
Confidence 468899999999999999999999999999998753 46779999999999999999999999872 3688999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-CCcEEEeccCCchh
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~-~~~vivIattn~~~ 531 (791)
.+...|+|.....++.+|..+....|+||||||||.|++.+.........++++.|+..|+++.. ...++||+|||.++
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 99999999888899999999999999999999999999877665556677899999999988753 57899999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
.|+++|+| ||+..|+|++|+.++|..||+.++......++...+..||..+.||+++||.+||.+|+..|+++.
T Consensus 283 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred ccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887776677788999999999999999999999999999874
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.6e-31 Score=280.14 Aligned_cols=264 Identities=41% Similarity=0.653 Sum_probs=220.9
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|++|+|++.+++.|.+++..++.++++|..+|+.++.++||+||||||||+||++||..++ ..++.+++
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~ 84 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVG 84 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEG
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 4478899999999999999999999999999999999999999999999999999999999999884 78888999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...+.+.....+..+|..+....|+||||||+|.+++.+.... .......+..++..++.+.....++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999987654432 2234456667777777777778899999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.++.+++++++++||...+.|+.|+.++|.+||+.++.......+.++ ..++..+.|+++++|..+|..|...|+.+..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~-~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~ 243 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL-EEIAKMTEGCVGAELKAICTEAGMNAIRELR 243 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988766544444 7899999999999999999999999988643
Q ss_pred CCccCCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLV 657 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~ 657 (791)
. .|+.+||..|+..+.+.....+..+.....|.
T Consensus 244 ~----------------~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~ 276 (285)
T 3h4m_A 244 D----------------YVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLY 276 (285)
T ss_dssp S----------------SBCHHHHHHHHHHHHHHHCCC-----------
T ss_pred C----------------cCCHHHHHHHHHHHHhccccccCCchHHHHHH
Confidence 2 48999999999887654433333333333343
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=9.2e-31 Score=296.62 Aligned_cols=246 Identities=39% Similarity=0.617 Sum_probs=213.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++|++|+|++++++.|++++.. +..+..|..+|+..|.+|||+||||||||+||++||.+++ ++|+.+++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~ 84 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSD 84 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHH
Confidence 578999999999999999999876 6788999999999999999999999999999999999984 7889999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+...++|.....++.+|..+....||||||||+|.|...++.. .......+++.|+..|+++.....++||++||.+
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998766432 2223457889999999988777789999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+.|+++++|+|||+..|.|++|+..+|.+||+.++....+..+.+ +..||..+.||+++||.++|++|+..|.++..
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~-l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-- 241 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN-LEIIAKRTPGFVGADLENLVNEAALLAAREGR-- 241 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999998876554443 46799999999999999999999999887542
Q ss_pred ccCCCccccccccccceeHHHHHHHhcccccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 642 (791)
..|+.+||..|+..+.+.
T Consensus 242 --------------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 242 --------------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp --------------SSBCHHHHHHHHHHHC--
T ss_pred --------------CeecHHHHHHHHHHHhcC
Confidence 248889999998877653
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=271.89 Aligned_cols=248 Identities=35% Similarity=0.594 Sum_probs=196.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++|++|+|++.+++.|.+++.. +.++..|..+|+..+.++||+||||||||++|++||++++ .+++.+++..
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~ 74 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAE 74 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHH
Confidence 457899999999999999998876 7788889999999999999999999999999999999984 6788889998
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch----hhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ----EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~----~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
+...+.+.....+..+|..+....|+||||||+|.+...+.... .......+..|+..++.+.....++||++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~ 154 (262)
T 2qz4_A 75 FVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR 154 (262)
T ss_dssp TSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC
Confidence 88888888888999999999988899999999999986553321 12234667788888887777778999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSREL-KSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~-~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
++.+++++++++||+..++|++|+.++|.+||+.++........... +..|+..+.||++++|.++|+.|+..|..+..
T Consensus 155 ~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~ 234 (262)
T 2qz4_A 155 ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH 234 (262)
T ss_dssp GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------
T ss_pred hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998877766553 47899999999999999999999988876532
Q ss_pred CCccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
..|+.+||..|+..+.+..
T Consensus 235 ----------------~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 235 ----------------TSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp ------------------CCBCCHHHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHhccCh
Confidence 2478889999988766543
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=279.52 Aligned_cols=258 Identities=33% Similarity=0.581 Sum_probs=216.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++|++|+|++.+++.|.+++..|+.++.+|...+ .++.+|||+||||||||+||++||..+ ...|+.+++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~~~ 152 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSISASS 152 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEehHH
Confidence 578999999999999999999999998999887765 678899999999999999999999987 37899999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC--CCcEEEeccCCchh
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRVD 531 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~--~~~vivIattn~~~ 531 (791)
+...+.+.....++.+|..+....|+||||||||.|++.+..........++..|+..+++... ...++||+|||.++
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998776554445567888899999987643 46799999999999
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
.|++++++ ||...++|++|+.++|..||+.++......++...+..|+..+.||++++|..||..|+..++++.....
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 9999999999999999999999998877777888889999999999999999999999999988643211
Q ss_pred cCCCccccccccccceeHHHHHHHhccccccc
Q 003859 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 612 ~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
. ..........|+.+||..|+..++|+.
T Consensus 311 ~----~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 311 I----ATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp ------------CCCBCHHHHHHHHHHHGGGC
T ss_pred h----ccccccccCCcCHHHHHHHHHhcCCCC
Confidence 1 011112335699999999999998854
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.2e-29 Score=272.16 Aligned_cols=259 Identities=34% Similarity=0.543 Sum_probs=216.0
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.++++|++|+|++.+++.|.+++..++.++++|..++ .++.++||+||||||||++|++||..++ ..|+.+++.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~ 88 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAA 88 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEEST
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHH
Confidence 3678999999999999999999999999999888765 5678999999999999999999999884 788899999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCC---CcEEEeccCCc
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR---GQVVLIGATNR 529 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~---~~vivIattn~ 529 (791)
.+...+.+.....++.+|..+....|+||||||+|.++..++.........++..|+..++++... ..++||++||.
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 988888888888999999999999999999999999987765544444567788889888876543 57999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
++.+++++++ ||...+++++|+.++|..||+.++......++...+..|+..+.||++++|.+||+.|+..++++...
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999999999999999988777778888899999999999999999999999999987532
Q ss_pred CccCCCccccccccccceeHHHHHHHhccccccc
Q 003859 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (791)
Q Consensus 610 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 643 (791)
.... .........|+.+||..|+..+.|+.
T Consensus 247 ~~~~----~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 247 EQVK----CLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp -----------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred hhcc----cccccccCCcCHHHHHHHHHHcCCCC
Confidence 1110 01111234699999999999888753
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=1.2e-29 Score=266.76 Aligned_cols=245 Identities=36% Similarity=0.598 Sum_probs=206.4
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+..+|++|+|++.+++.|.+++.. +.++..|..++...+.++||+||||||||++|++||..++ .+++.+++.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~ 79 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGS 79 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHH
Confidence 3678999999999999999998876 7778888888888999999999999999999999999884 567888998
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
.+...+.+.....++.+|..+....|+||||||+|.+...++.. .......++..++..++++.....++||++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 88887778778889999999998889999999999998765432 122234678889999998877788999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
++.+++++.+++||+..+.|++|+.++|.+||+.++....+..+.. +..++..+.||++++|.++|.+|+..|..+..
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~-~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~- 237 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID-AAIIARGTPGFSGADLANLVNEAALFAARGNK- 237 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999998876554443 36789999999999999999999999987642
Q ss_pred CccCCCccccccccccceeHHHHHHHhcccc
Q 003859 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 610 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
..|+.+||..|+..+.
T Consensus 238 ---------------~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 238 ---------------RVVSMVEFEKAKDKIM 253 (257)
T ss_dssp ---------------SSBCHHHHHHHHHHHT
T ss_pred ---------------CcccHHHHHHHHHHHh
Confidence 2589999999987654
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=278.07 Aligned_cols=259 Identities=34% Similarity=0.560 Sum_probs=211.1
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|++|+|++.+++.|.+++..++.++++|..++ .++.+||||||||||||+||++||..++ ..|+.+++
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~ 181 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISA 181 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECS
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeH
Confidence 34678999999999999999999999998999888776 5578999999999999999999999874 78999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC--CCcEEEeccCCc
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNR 529 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~--~~~vivIattn~ 529 (791)
..+...+.+.....+..+|..+....|+||||||||.|+..+..........++..|+..|+++.. ...|+||+|||.
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 999999999999999999999999999999999999998776555555567888899999987654 467999999999
Q ss_pred hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCC
Q 003859 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (791)
Q Consensus 530 ~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~ 609 (791)
++.|++++++ ||...|+|+.|+.++|..||+.++......+....+..|+..+.||++++|..||..|+..++++...
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999 99989999999999999999999998888888888899999999999999999999999999987543
Q ss_pred CccCCCccccccccccceeHHHHHHHhcccccc
Q 003859 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (791)
Q Consensus 610 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 642 (791)
.... .........|+.+||..++..+.++
T Consensus 340 ~~~~----~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 340 EQVK----NMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp C-------CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred hhhh----ccchhhcCCcCHHHHHHHHHHcCCC
Confidence 2211 1111233468999999999887764
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=2.9e-29 Score=285.96 Aligned_cols=248 Identities=38% Similarity=0.579 Sum_probs=214.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+.++|++|+|+++++..|.+++.. +..+..|..+++..+.++||+||||||||+||++||..+. ..|+.+++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 678999999999999999998876 6778889999999999999999999999999999999874 7788999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+...+++.....++.+|+.+....|+||||||||.+...++.. ........+++|+..|++......++||++||.|
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p 179 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCG
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCCh
Confidence 9888888888889999999887789999999999998765421 1223456788999999988777889999999999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
+.||++++|++||+..|.|++|+..+|.+||+.++....+..+.+ +..||..+.||+++||.++|++|+..|.++..
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~-l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~-- 256 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR-- 256 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST-THHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC--
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999988765544443 46899999999999999999999988876432
Q ss_pred ccCCCccccccccccceeHHHHHHHhcccccccc
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~ 644 (791)
..|+.+||..|+..+.+...
T Consensus 257 --------------~~It~~dl~~al~~v~~~~~ 276 (499)
T 2dhr_A 257 --------------RKITMKDLEEAADRVMMLPA 276 (499)
T ss_dssp --------------SSCCSHHHHHHHHHHTTCSS
T ss_pred --------------CccCHHHHHHHHHHHhcccc
Confidence 24899999999988766543
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=5.6e-28 Score=253.41 Aligned_cols=242 Identities=39% Similarity=0.592 Sum_probs=202.5
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|++|+|++.++..|+.++.. +..+..+..+++..+.|++|+||||||||+|+++||..+. ..++.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~ 82 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASG 82 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeH
Confidence 34788999999999999999998776 5667888899999999999999999999999999999874 56788888
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...+.+.....+..+|+.+....|+++||||+|.+...+... .......++..++..|++......++++++||
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccC
Confidence 888777777777888899999887789999999999887654321 12234567788888898877777889999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.|+.|+++++|++||+..|.|+.|+.++|.+||+.++....+..+.+ +..||..+.||+++||.++|.+|+..|..+..
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~ 241 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR 241 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988765544433 46899999999999999999999998887532
Q ss_pred CCccCCCccccccccccceeHHHHHHHh
Q 003859 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (791)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~lt~~df~~Al 636 (791)
..|+.+||..|+
T Consensus 242 ----------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 ----------------RKITMKDLEEAA 253 (254)
T ss_dssp ----------------SSBCHHHHHHHT
T ss_pred ----------------CCcCHHHHHHHh
Confidence 248999999886
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=2.5e-30 Score=312.61 Aligned_cols=264 Identities=36% Similarity=0.627 Sum_probs=211.3
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.++|++++|++.+++.|.+++.+++.++..|..+++.++.++||+||||||||+||++||..++ ..|+.+++
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~ 544 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 544 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCC
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEec
Confidence 4478899999999999999999999999999999999999999999999999999999999999994 56778889
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
..+...|+++....++.+|..+....||||||||||.|+..+... ......+++++|+..|+++.....++||+|||
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN 624 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCB
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecC
Confidence 999999999999999999999999999999999999998876532 23456789999999999888888999999999
Q ss_pred chhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Q 003859 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 529 ~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~ 608 (791)
.++.||++++|||||+..|+|++|+.++|..||+.++....+..+.++ ..||..+.||++++|.++|+.|+..|+++..
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l-~~la~~t~g~sgadi~~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-EFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC-SCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH-HHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987665444443 6788999999999999999999999998754
Q ss_pred CCccCCCcc---------ccccccccceeHHHHHHHhccccc
Q 003859 609 PQVYTSDDK---------FLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 609 ~~~~~~~~~---------~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
......... .........|+.+||..|+...+|
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 745 (806)
T 1ypw_A 704 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp -----------------------CCTTTTTTSSCCCCCC---
T ss_pred HHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCC
Confidence 321100000 000111235777888877766554
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=8.7e-27 Score=247.93 Aligned_cols=243 Identities=39% Similarity=0.590 Sum_probs=202.0
Q ss_pred ccCCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 371 ~~~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
...+.++|++|+|++.++..|..++.. +..+..+..+++..+.+++|+||||||||+|+++||..+. ..++.++
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~ 105 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITAS 105 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEE
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEec
Confidence 334789999999999999999998766 5667888888999999999999999999999999999874 5678888
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCc---hhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~---~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+..+...+.+.....+..+|+.+....|+|+||||+|.+...+... ........+..++..|.+......++++++|
T Consensus 106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec
Confidence 8888777777777888899999987889999999999886544321 1122356677888888877766778999999
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|.|+.|++++++++||+..|.|+.|+.++|.+||+.++....+..+.. +..+|..+.||+++||.++|.+|+..|..+.
T Consensus 186 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp SCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999988765544433 4679999999999999999999999887653
Q ss_pred CCCccCCCccccccccccceeHHHHHHHh
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al 636 (791)
. ..|+.+||..|+
T Consensus 265 ~----------------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 R----------------RKITMKDLEEAA 277 (278)
T ss_dssp C----------------CSBCHHHHHHHT
T ss_pred C----------------CCcCHHHHHHHh
Confidence 2 248999999886
No 28
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=5.9e-27 Score=283.11 Aligned_cols=306 Identities=20% Similarity=0.233 Sum_probs=211.6
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (791)
+..|++|+|.+..+..+.+++.. ..+.++||+||||||||++|++||..+.... ....++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 45789999999999999887654 3567899999999999999999999985432 24566777
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
+...+. ..+.|..+..++.+|..+....++||||||+|.|++.+..... ... +.+.+..+...+.+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~----~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVD----AANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHH----HHHHHSSCSSSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHH----HHHHHHHHHhCCCeEEEEEe
Confidence 666655 3567888889999999988777899999999999876543211 122 22344444456788999999
Q ss_pred Cchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccC-----CCHHHHH
Q 003859 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVG-----YCGADLK 593 (791)
Q Consensus 528 n~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~----~~~~~~~~~~~~LA~~t~G-----~s~~di~ 593 (791)
|.++ .++++|.+ ||. .|.|+.|+.+++.+||+.++.. .....+...+..++..+.+ +.+..+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 8765 36889999 997 6999999999999999987765 3556677777777776655 5677888
Q ss_pred HHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccccccCcccccCCCccchHHHHHHHHHHHHHHH
Q 003859 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYI 673 (791)
Q Consensus 594 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l 673 (791)
.++.+|+..+...... .....|+.++|..++..++.. +...+.|.++..+.. +...+
T Consensus 400 ~lld~a~~~~~~~~~~------------~~~~~v~~~di~~~~~~~~~i-------p~~~~~~~~~~~l~~----l~~~l 456 (758)
T 1r6b_X 400 DVIDEAGARARLMPVS------------KRKKTVNVADIESVVARIARI-------PEKSVSQSDRDTLKN----LGDRL 456 (758)
T ss_dssp HHHHHHHHHHHHSSSC------------CCCCSCCHHHHHHHHHHHSCC-------CCCCSSSSHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhccccc------------ccCCccCHHHHHHHHHHhcCC-------CccccchhHHHHHHH----HHHHH
Confidence 8998887655432110 123358999999999887643 234556777666543 22222
Q ss_pred HhhcCCCCCcHHHHH----hhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 674 SDIFPPLGMSSELTK----LCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 674 ~~~~p~~~~~~~~~~----~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
... .+.+...... +.....|...+-++...|||+||||||||++|++++..+
T Consensus 457 ~~~--v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 457 KML--VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTT--SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred Hhh--ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 221 1223322211 111223333343333369999999999998888887765
No 29
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=2.5e-29 Score=265.58 Aligned_cols=250 Identities=38% Similarity=0.594 Sum_probs=200.7
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.+.++|++|+|++.+++.|.+++.. +.+++.|..++...+.++||+||||||||+||++||..++ .+|+.+++.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~ 78 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGS 78 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechH
Confidence 3678999999999999999998876 7889999999999999999999999999999999999985 566677777
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCch----hhhhHHHHHHHHHHHhccCC-CCcEEEeccC
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ----EQIHNSIVSTLLALMDGLDS-RGQVVLIGAT 527 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~----~~~~~~v~~~Ll~~l~~~~~-~~~vivIatt 527 (791)
.+...+.+.....++.+|..+....|+||||||+|.|...+.... ......++..|+..++++.. ...++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 158 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAAT 158 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECB
T ss_pred HHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEec
Confidence 777766666666677889988888899999999999986542211 11122345667777776543 3458999999
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
|.++.+++++.+++||...|.|+.|+.++|.+||+.++.......+.. +..|+..+.||++++|.++|..|...|..+.
T Consensus 159 n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~ 237 (268)
T 2r62_A 159 NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN-LQEVAKLTAGLAGADLANIINEAALLAGRNN 237 (268)
T ss_dssp SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC-TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC
T ss_pred CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998765543333 3678889999999999999999988765432
Q ss_pred CCCccCCCccccccccccceeHHHHHHHhccccccccc
Q 003859 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHR 645 (791)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~r 645 (791)
...|+.++|..|+....+...+
T Consensus 238 ----------------~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 238 ----------------QKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp ----------------CCSCCHHHHHTSCTTCCCCCC-
T ss_pred ----------------cCCcCHHHHHHHHHHHhhcchh
Confidence 1248999999999888776543
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.94 E-value=5.9e-27 Score=282.93 Aligned_cols=343 Identities=17% Similarity=0.144 Sum_probs=203.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-----CCceEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYM 448 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~ 448 (791)
....|++|+|.+..+..|..++.. ..+.++||+||||||||++|++||+.+... ...+.++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 345788999999999999888755 345689999999999999999999998432 13456666
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+++ ...|.|+++..++.+|..+....++||||| . .....+.|+..|+ .+.+.||++||
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~----~~~v~~I~at~ 299 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA----RGELQCIGATT 299 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT----SSSCEEEEECC
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHh----cCCEEEEeCCC
Confidence 665 556788888899999999998889999999 1 1122333433333 67899999999
Q ss_pred chh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHc-----cCCCHHHHHH
Q 003859 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASC-----VGYCGADLKA 594 (791)
Q Consensus 529 ~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~----~~~~~~~~~~~~LA~~t-----~G~s~~di~~ 594 (791)
... .++++|.+ ||. .|.|+.|+.+++..||+.++.. ....++...+..++..+ .++.+.....
T Consensus 300 ~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 877 68999999 994 6999999999999999987766 35567777777777654 3566788888
Q ss_pred HHHHHHHHHHHhhCCCccCC---------------------Cc------------------------cccccccccceeH
Q 003859 595 LCTEAAIRAFREKYPQVYTS---------------------DD------------------------KFLIDVDSVTVEK 629 (791)
Q Consensus 595 l~~~A~~~a~~~~~~~~~~~---------------------~~------------------------~~~~~~~~~~lt~ 629 (791)
++..|+..+.......-..- +. ..........++.
T Consensus 377 ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 456 (758)
T 3pxi_A 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTV 456 (758)
T ss_dssp HHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCT
T ss_pred HHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCH
Confidence 88888766544322100000 00 0000011233555
Q ss_pred HHHHHHhcccccccccCccccc-CC------CccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCC
Q 003859 630 YHFIEAMSTITPAAHRGATVHS-RP------LSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVY 702 (791)
Q Consensus 630 ~df~~Al~~~~p~~~r~~~l~~-~~------v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~ 702 (791)
+++..++..++........... .. .-...+.|....++.+...+.. ...|...|-++
T Consensus 457 ~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~----------------~~~~~~~~~~p 520 (758)
T 3pxi_A 457 DDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRR----------------ARAGLKDPKRP 520 (758)
T ss_dssp HHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHH----------------HTTTCSCTTSC
T ss_pred HHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHH----------------HHcccCCCCCC
Confidence 5666665555433221111000 00 0001111222222222222222 11122223332
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHHHH------HHhhhhh-cCCceEEEEeCchhhcccc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQLFF------QILVPRH-QRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~~~------~~~~~a~-~~~P~ivfldeid~~a~~~ 770 (791)
...|||+||||||||++|++++..++....+.+..++.++.. ..|+.+. +..++|||||||+.+...+
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~ 595 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDV 595 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHH
Confidence 336999999999999999999888766544444433332221 1223332 3346899999999875543
No 31
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.93 E-value=2.8e-26 Score=280.13 Aligned_cols=208 Identities=25% Similarity=0.277 Sum_probs=143.6
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (791)
+.+|++|+|.+..+..+..++.. ..++++||+||||||||++|++||+.+.... ....++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45789999999999999887754 3456899999999999999999999985421 25678888
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHhc-CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~~-~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
++..+. ..+.|.....+..+|..+... .|+||||||+|.|.+.....+ ...+.+.|..++. .+.+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHh----CCCeEEEEe
Confidence 887776 467788888999999998875 689999999999986543322 2233444555554 467888999
Q ss_pred CCchh----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHc-----cCCCHHHHH
Q 003859 527 TNRVD----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASC-----VGYCGADLK 593 (791)
Q Consensus 527 tn~~~----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~----~~~~~~~~~~~LA~~t-----~G~s~~di~ 593 (791)
||.++ .++++|.+ ||.. |.|+.|+.+++..||+.++..+ ...++...+..++..+ ..|.+....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 98875 37999999 9985 9999999999999999777643 5556777777777765 456677888
Q ss_pred HHHHHHHHHHHH
Q 003859 594 ALCTEAAIRAFR 605 (791)
Q Consensus 594 ~l~~~A~~~a~~ 605 (791)
.++.+|+..+..
T Consensus 383 ~lldea~a~~~~ 394 (854)
T 1qvr_A 383 DLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888777665543
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=3.2e-23 Score=222.21 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=134.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHH----HhcCCeEEEE
Q 003859 408 YHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFF 483 (791)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a----~~~~p~VL~I 483 (791)
.+..+|.++|||||||||||+||++||+.++ .+|+.+++..+...++|.....++.+|..+ +...|+||||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3567889999999999999999999999994 788899999999999999999999999988 4678999999
Q ss_pred eCCCccCCCCCCch--hhhhHHHHHHHHHHHhccC-----------CCCcEEEeccCCchhhhhhhhcCCCCccccccCC
Q 003859 484 DEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (791)
Q Consensus 484 DEiD~L~~~~~~~~--~~~~~~v~~~Ll~~l~~~~-----------~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~ 550 (791)
||||.+++...... ......++..|+.+|++.. ...+++||+|||.++.|+++|+|++||+..|.
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--
Confidence 99999987443211 1234467789999987432 45679999999999999999999999998886
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHH
Q 003859 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA 594 (791)
Q Consensus 551 ~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~ 594 (791)
.|+.++|.+|++.++....+. ...++..+.||++++|..
T Consensus 184 ~P~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 184 APTREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCCHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred CcCHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 479999999999888764332 367888889999888864
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=9.2e-21 Score=203.89 Aligned_cols=218 Identities=20% Similarity=0.223 Sum_probs=175.5
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHHHhhcCC--ceEEEEEechhh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGADV 454 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~~~~~ 454 (791)
+|+|++.+++.|.+++..+. .+..+..+|+.. +.++||+||||||||++|++||+.+...+. ...++.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988743 466666666543 457999999999999999999999976542 457888999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh---
Q 003859 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--- 531 (791)
Q Consensus 455 ~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~--- 531 (791)
...+++.....+..+|..+ .++||||||+|.|+..++. ......++..|+..|+. ....++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHH
Confidence 8888888888888888876 4579999999999855432 23356788889999885 345788888888754
Q ss_pred --hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHH
Q 003859 532 --AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC-------VGYCGADLKALCTEAAIR 602 (791)
Q Consensus 532 --~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t-------~G~s~~di~~l~~~A~~~ 602 (791)
.++++|++ ||...|.|++|+.+++..||+.++......++.+.+..|+..+ ...+++++.++|..|+..
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 35799999 9999999999999999999999999888888888888888763 234589999999999887
Q ss_pred HHHhh
Q 003859 603 AFREK 607 (791)
Q Consensus 603 a~~~~ 607 (791)
+..+.
T Consensus 262 ~~~r~ 266 (309)
T 3syl_A 262 QANRL 266 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=7.6e-20 Score=207.96 Aligned_cols=168 Identities=23% Similarity=0.281 Sum_probs=126.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+...|++|+|++++++.+..++... ..+..++.++|||||||||||++|+++|+.++. .++|+.++++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~ 100 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSE 100 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGG
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHH
Confidence 5677999999999999998877542 234567789999999999999999999999843 37899999999
Q ss_pred hhhhhHhHHHHHHHHHHHHH---HhcCCeEEEEeCCCccCCCCCCchhhhh-------------------HHHHHHHHHH
Q 003859 454 VLSKWVGEAERQLKLLFEEA---QRNQPSIIFFDEIDGLAPVRSSKQEQIH-------------------NSIVSTLLAL 511 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a---~~~~p~VL~IDEiD~L~~~~~~~~~~~~-------------------~~v~~~Ll~~ 511 (791)
+...+++..+. +..+|..+ ....|+||||||+|.|++.+........ ..+...++..
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 99999999887 89999998 7778999999999999987654321100 1222335555
Q ss_pred Hh--ccCCCCcEEEeccCCchhhhhhhhcCCCCccc--cccCCCCC
Q 003859 512 MD--GLDSRGQVVLIGATNRVDAIDGALRRPGRFDR--EFNFPLPG 553 (791)
Q Consensus 512 l~--~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~--~I~~~~Pd 553 (791)
++ ++.....++|++|||.++.+++++.|++||+. .+.++.|+
T Consensus 180 l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 180 LQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp HHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred HhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 54 22333445666888999999999988888877 45556663
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.81 E-value=6.1e-19 Score=194.36 Aligned_cols=224 Identities=19% Similarity=0.164 Sum_probs=163.9
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
.|..+|++++|++.++..+..++... ..+..++.++||+||||||||++|+++|+.+.. ..+++.+++.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~~~~~~~ 106 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP---DTPFTAIAGS 106 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS---SCCEEEEEGG
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---cCCcccccch
Confidence 35566999999999998876655431 113344679999999999999999999999852 3456666654
Q ss_pred hhhhhh-------------------------------------------------HhHHHHHHHHHHHHHHh-----c--
Q 003859 453 DVLSKW-------------------------------------------------VGEAERQLKLLFEEAQR-----N-- 476 (791)
Q Consensus 453 ~~~~~~-------------------------------------------------~g~~~~~l~~lf~~a~~-----~-- 476 (791)
.+...+ .+.....++..|..+.. .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 422111 11223344444444332 1
Q ss_pred --CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC-----------CchhhhhhhhcCCCCc
Q 003859 477 --QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT-----------NRVDAIDGALRRPGRF 543 (791)
Q Consensus 477 --~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt-----------n~~~~Ld~aL~r~gRf 543 (791)
.|+||||||+|.|. ...++.|+..++.. ...+++|++. |.+..++++|++ ||
T Consensus 187 ~~~~~vl~IDEi~~l~-----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLD-----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp --CBCEEEEESGGGSB-----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred cccCceEEEhhccccC-----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 16799999999884 45666777777743 3345554443 346789999999 99
Q ss_pred cccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCcccccccc
Q 003859 544 DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVD 623 (791)
Q Consensus 544 ~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~ 623 (791)
.. |.|++|+.+++..||+..+......++.+.+..|+..+.+.+++++.++|..|...|..+..
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~--------------- 315 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG--------------- 315 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---------------
Confidence 76 89999999999999999998888888999999999999867999999999999998876532
Q ss_pred ccceeHHHHHHHhccc
Q 003859 624 SVTVEKYHFIEAMSTI 639 (791)
Q Consensus 624 ~~~lt~~df~~Al~~~ 639 (791)
..|+.+++..++..+
T Consensus 316 -~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 316 -TEVQVDDIKRVYSLF 330 (368)
T ss_dssp -SSBCHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHh
Confidence 258999999998754
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=3.8e-18 Score=182.93 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=167.7
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh-h
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASY-HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~-g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~-~ 457 (791)
.|+|++.+++.|...+..++....+...+ +...+.++||+||||||||++|++||+.++ ..++.+++..+.. .
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~ 90 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSCC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccCC
Confidence 58999999999998886532222111110 013567899999999999999999999984 5678888877654 3
Q ss_pred hHhH-HHHHHHHHHHHH-----HhcCCeEEEEeCCCccCCCCCCchh-hhhHHHHHHHHHHHhccC--------CCCcEE
Q 003859 458 WVGE-AERQLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQE-QIHNSIVSTLLALMDGLD--------SRGQVV 522 (791)
Q Consensus 458 ~~g~-~~~~l~~lf~~a-----~~~~p~VL~IDEiD~L~~~~~~~~~-~~~~~v~~~Ll~~l~~~~--------~~~~vi 522 (791)
+++. ....+..++..+ ....++||||||+|.+.+....... .....+++.|+..|+... ....++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 170 (310)
T 1ofh_A 91 YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170 (310)
T ss_dssp SGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCE
T ss_pred ccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEE
Confidence 4332 223345554422 1123579999999999865432222 223345778888888531 234678
Q ss_pred Eecc----CCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHH----H-------H--hcCCCCCCHHHHHHHHHHcc
Q 003859 523 LIGA----TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI----H-------T--RKWKQPPSRELKSELAASCV 585 (791)
Q Consensus 523 vIat----tn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~----~-------l--~~~~~~~~~~~~~~LA~~t~ 585 (791)
||++ ++.+..++++|.+ ||...|.|++|+.+++..||+. + + .+....++.+.+..|+..+.
T Consensus 171 ~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 171 FIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp EEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred EEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 8887 5678889999998 9998899999999999999983 2 1 12223567888888888773
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 586 -------GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 586 -------G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
+...+.+.++|..+...+...... .......|+.+++..++....
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~----------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASD----------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG----------CTTCEEEECHHHHHHHTCSSS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCcc----------ccCCEEEEeeHHHHHHHHhhh
Confidence 568899999999887665543211 011234599999999997653
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=2.8e-17 Score=179.06 Aligned_cols=215 Identities=21% Similarity=0.233 Sum_probs=162.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+.+|++|+|.+.+++.|..++..... .-.++.+|||+||||||||++|+++|+.++ ..|+.+++..
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~ 90 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPM 90 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchh
Confidence 455899999999999999998865311 114556899999999999999999999874 5677777765
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC----------------
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------------- 517 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------------- 517 (791)
+.. .+ .+..++.. ...++|||||||+.+. ..++..|+..|+....
T Consensus 91 ~~~--~~----~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 91 IEK--SG----DLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp CCS--HH----HHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ccc--hh----HHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 421 11 22222222 2457899999999884 3456677777765321
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
..++++|++||....++++|++ ||+..|.|++|+.+++..|++.++.......+.+.+..|+..+.| +++.+.+++.
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 1148999999999999999999 998899999999999999999999888877888888889886655 6788999998
Q ss_pred HHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 598 EAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 598 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
.+...+..... ..|+.+++..++...
T Consensus 229 ~~~~~a~~~~~----------------~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 229 RVRDFADVNDE----------------EIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHTTC----------------SEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcC----------------CccCHHHHHHHHHHh
Confidence 88766654321 247888888877653
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=4.1e-17 Score=164.98 Aligned_cols=211 Identities=23% Similarity=0.162 Sum_probs=153.7
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+..|++++|.+.+++.|..++.. ....++||+||+|||||++|+++++.+........++.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 567789999999999999988764 1233599999999999999999999986665566677777654
Q ss_pred hhhhhHhHHHHHHHHHHHH--HHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh
Q 003859 454 VLSKWVGEAERQLKLLFEE--AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~--a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~ 531 (791)
.... ......+..+... .....+.||||||+|.+. ......|+..++.. ...+++|++||.+.
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp TTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred ccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 3321 1111111111111 012457899999999874 23455666667642 45678888899988
Q ss_pred hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 532 ~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
.+++.+.+ ||. .+.|++|+.++...+|..++......++...+..|+..+.| .++.+.+++..++..+
T Consensus 144 ~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-------- 211 (226)
T 2chg_A 144 RIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-------- 211 (226)
T ss_dssp GSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--------
T ss_pred hcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--------
Confidence 99999998 887 89999999999999999998877777788888888887766 5666666666554322
Q ss_pred cCCCccccccccccceeHHHHHHHhc
Q 003859 612 YTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 612 ~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
..|+.+++..++.
T Consensus 212 -------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------------EVVDADTIYQITA 224 (226)
T ss_dssp -------------SCBCHHHHHHHHH
T ss_pred -------------ceecHHHHHHHhc
Confidence 1488889988875
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=3.1e-17 Score=185.44 Aligned_cols=228 Identities=15% Similarity=0.164 Sum_probs=162.9
Q ss_pred cCCCCCCCccC-Cc--HHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 372 VDESVSFDDIG-GL--SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 372 ~~~~~~~~~l~-G~--e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
..+..+|++++ |. ...+..+..++..+ + . +.++|||||||||||+||++||+.+........++.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 44677999977 54 33444444444331 1 2 568999999999999999999999866544566777
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+++..+...+...........|.......+.||||||++.+... ......|+..++.+...+..+||++.+
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp EEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred eeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 88877765554433322222333333336789999999988642 123344555555444456677777766
Q ss_pred chhh---hhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 529 ~~~~---Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.+.. +++.|.+ ||. .++.|++|+.+++..||+..+......++.+.+..||..+.| +.+++.+++..+...|
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6665 7889988 885 789999999999999999998877777788888899988875 7899999999988777
Q ss_pred HHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 604 FREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
..... .|+.+++..++....
T Consensus 314 ~~~~~-----------------~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTGK-----------------EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSSS-----------------CCCHHHHHHHTSTTT
T ss_pred HHhCC-----------------CCCHHHHHHHHHHHh
Confidence 54321 378888888887765
No 40
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-19 Score=197.25 Aligned_cols=127 Identities=9% Similarity=0.037 Sum_probs=98.4
Q ss_pred cccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhH
Q 003859 639 ITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFN 718 (791)
Q Consensus 639 ~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~ 718 (791)
..|..........|+++|++||||+.+++++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~---Pl~~pe~f~~~gi~---------~prGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIEL---PVKHPELFESLGIA---------QPKGVILYGPPGTGKTL 197 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCC---------CCCCEEEESCSSSSHHH
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHH---HHhCHHHHHhCCCC---------CCCceEEeCCCCCCHHH
Confidence 3455555566677999999999999888888888777 89999999999764 35599999999999997
Q ss_pred HHHHHHHHH----cCchhHHHHHH----HHHHHHHHhhhhhcCCceEEEEeCchhhccccccccccc
Q 003859 719 RIILGLQFY----MNWRNFLFILL----VFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSI 777 (791)
Q Consensus 719 la~~~~~~~----~~~~~~~l~~d----~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~ 777 (791)
+|+++|..+ +.+.++.+... --.+++.+|..|+..+||||||||||+++..+.....+.
T Consensus 198 lAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~ 264 (405)
T 4b4t_J 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264 (405)
T ss_dssp HHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG
T ss_pred HHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCC
Confidence 777776653 22333433322 236788889999999999999999999999886655443
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=1.8e-16 Score=171.89 Aligned_cols=225 Identities=12% Similarity=0.167 Sum_probs=156.9
Q ss_pred CCCCCCCccC-C--cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 373 DESVSFDDIG-G--LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 373 ~~~~~~~~l~-G--~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
.+..+|++++ | ....+..+..++..+ ...+.++||+||||||||+||++|++.+... ...++.+
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i 71 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYS 71 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEE
Confidence 3677899986 4 445555666655442 1245789999999999999999999998654 3566777
Q ss_pred echhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 450 ~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
++..+...+.+.........|.... ..++||||||++.+... ......|+..++.....+..+||++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 72 SADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp EHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8877766555444332223333322 23779999999988632 1223344444444333556777777777
Q ss_pred hh---hhhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH--
Q 003859 530 VD---AIDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR-- 602 (791)
Q Consensus 530 ~~---~Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~-- 602 (791)
+. .++++|.+ ||. .++.|++ +.+++..||+.++......++.+.+..|+..+ ...+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCH
Confidence 76 57899998 885 6789999 99999999999998888888999999999999 4678888888877655
Q ss_pred -HHHhhCCCccCCCccccccccccce-eHHHHHHHhcccc
Q 003859 603 -AFREKYPQVYTSDDKFLIDVDSVTV-EKYHFIEAMSTIT 640 (791)
Q Consensus 603 -a~~~~~~~~~~~~~~~~~~~~~~~l-t~~df~~Al~~~~ 640 (791)
++. . .....| +.+++..++...-
T Consensus 217 ~~l~-~--------------~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 217 EGLE-R--------------KERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHH-H--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-c--------------ccccCCCCHHHHHHHHHHHh
Confidence 111 0 011247 8888888887543
No 42
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=5.7e-18 Score=196.28 Aligned_cols=231 Identities=19% Similarity=0.225 Sum_probs=151.5
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
.-..+++|+++++..+.+.+...... ..+ ++.++||+||||||||+||++||..+. ..+..+++..+.
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~ 145 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVR 145 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC--
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccc
Confidence 34567999999999998876542111 111 456899999999999999999999984 556666654432
Q ss_pred h---------hhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC---------
Q 003859 456 S---------KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--------- 517 (791)
Q Consensus 456 ~---------~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~--------- 517 (791)
. .++|.....+..+|..+....| ||||||+|.+..... ...+..|+..|+....
T Consensus 146 ~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 146 DESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp ------------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCC
Confidence 2 4556666666777777665556 999999999975421 1244566776654221
Q ss_pred ----CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc-----C-----CCCCCHHHHHHHHHH
Q 003859 518 ----RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----W-----KQPPSRELKSELAAS 583 (791)
Q Consensus 518 ----~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~-----~-----~~~~~~~~~~~LA~~ 583 (791)
...++||+|||.++.++++|++ ||. +|.|+.|+.+++..||+.++.. . .+.++.+.+..|+..
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 1568999999999999999999 995 7999999999999999987622 2 334567777787775
Q ss_pred ccC-CCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 584 CVG-YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 584 t~G-~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..+ ...++|.+.+..++..+...... .......|+.+++..++...
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~----------~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVA----------EERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHT----------TCCSCCEECTTTTHHHHCSC
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHh----------cCCcceecCHHHHHHHhCCc
Confidence 543 45566666666555544433221 01234568888998888643
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=6e-17 Score=171.21 Aligned_cols=207 Identities=20% Similarity=0.244 Sum_probs=143.4
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh-h
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-S 456 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~-~ 456 (791)
...++|.....+.+...... ....+...+..++.++||+||||||||++|++||+.++ .+|+.+++...+ +
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~~~i~~~~~~~g 103 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-----FPFIKICSPDKMIG 103 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSEEEEECGGGCTT
T ss_pred hcCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeCHHHhcC
Confidence 34578887776666653211 01222333346678999999999999999999999974 567777665432 2
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-CCCcEEEeccCCchhhhhh
Q 003859 457 KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNRVDAIDG 535 (791)
Q Consensus 457 ~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-~~~~vivIattn~~~~Ld~ 535 (791)
...+.....++.+|..+....++||||||+|.|++..... ......++..|...++... ....++||+|||.++.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 104 FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 2223344677888888887788999999999997654322 2234567777777777654 3457889999999999988
Q ss_pred -hhcCCCCccccccCCCCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCC----CHHHHHHHHHHHH
Q 003859 536 -ALRRPGRFDREFNFPLPGC-EARAEILDIHTRKWKQPPSRELKSELAASCVGY----CGADLKALCTEAA 600 (791)
Q Consensus 536 -aL~r~gRf~~~I~~~~Pd~-eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~----s~~di~~l~~~A~ 600 (791)
.+.+ ||...|.||+++. ++...++.. .. ..+...+..|+..+.|| ..+++.+++..|.
T Consensus 183 ~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~--~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIATGEQLLEALEL---LG--NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp TTCTT--TSSEEEECCCEEEHHHHHHHHHH---HT--CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhhhc--ccceEEcCCCccHHHHHHHHHHh---cC--CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 5666 9988888877665 454444443 22 34677778999999997 5677777776554
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.71 E-value=1.4e-16 Score=163.79 Aligned_cols=211 Identities=14% Similarity=0.100 Sum_probs=147.4
Q ss_pred CCCCCCCccCC---cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 373 DESVSFDDIGG---LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 373 ~~~~~~~~l~G---~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
.+..+|++++| ...++..|..++.. ..+.++||+||||||||++|++++..+...+..+ +.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~--~~~ 86 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRS--FYI 86 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE--EEE
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEE
Confidence 35578899886 34667777666543 2457899999999999999999999997665444 445
Q ss_pred echhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcE-EEeccCC
Q 003859 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIGATN 528 (791)
Q Consensus 450 ~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~v-ivIattn 528 (791)
++..+...+.. ++.. ...+.||||||++.+... ......|+.+++.....+.+ +|++++.
T Consensus 87 ~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 87 PLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp EGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred EHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 55554433211 1111 134679999999988532 11233444544433333444 5555554
Q ss_pred chh---hhhhhhcCCCCcc--ccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 529 RVD---AIDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 529 ~~~---~Ld~aL~r~gRf~--~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.+. .+.+.+.+ ||. ..+.|++|+.+++.+||..++......++.+.+..|+..+.| +.+.+.+++..+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 443 34577877 775 789999999999999999999887778888988999998866 7889999999888877
Q ss_pred HHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 604 FREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
..... .|+.+++..++.
T Consensus 225 ~~~~~-----------------~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQR-----------------KLTIPFVKEMLR 241 (242)
T ss_dssp HHHTC-----------------CCCHHHHHHHHT
T ss_pred HHhCC-----------------CCcHHHHHHHhh
Confidence 54322 388888888774
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=1e-16 Score=173.25 Aligned_cols=216 Identities=22% Similarity=0.249 Sum_probs=156.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+.+|++++|.+.++..|..++... ... ...+.++||+||||||||++|+++++.++ ..++.+++..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 73 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAA-------KAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPA 73 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHH-------HHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTT
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHH-------Hcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccc
Confidence 3458999999999999998887642 111 13457899999999999999999999884 5666677655
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC----------------C
Q 003859 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------S 517 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~----------------~ 517 (791)
+... ..+...|.. ....+++|||||++.+. ...+..|+..++... .
T Consensus 74 ~~~~------~~l~~~l~~-~~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 74 IEKP------GDLAAILAN-SLEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp CCSH------HHHHHHHTT-TCCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred cCCh------HHHHHHHHH-hccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccC
Confidence 4221 112222221 01357799999999884 234455666666432 1
Q ss_pred CCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 518 ~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
...+++|++||.+..++++|.+ ||..++.|++|+.+++..++..++......++.+.+..|+..+.| +++.+.+++.
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~ 212 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFR 212 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence 1357899999999999999998 998899999999999999999999888888888888999999866 5688888887
Q ss_pred HHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 598 EAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 598 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
.+...+... ....|+.+++..++...
T Consensus 213 ~~~~~a~~~----------------~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 213 RVRDFAQVA----------------GEEVITRERALEALAAL 238 (324)
T ss_dssp HHTTTSTTT----------------SCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh----------------cCCCCCHHHHHHHHHHh
Confidence 765443221 11247777887776543
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.70 E-value=1.7e-16 Score=162.27 Aligned_cols=209 Identities=19% Similarity=0.188 Sum_probs=152.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (791)
.+..|++++|.+.+++.|...+... ..+..+||+||+|||||++|+++++.+......
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 4567889999999999999887541 334579999999999999999999988643210
Q ss_pred ---------eEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 444 ---------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 444 ---------~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
..++.+..... .....+..++..+. ...+.||||||+|.+. ...+..|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTCG------GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHH
T ss_pred HHHHhccCCcceEEecCccc------ccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHH
Confidence 01222222210 11223344444332 2347899999999873 345666777
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.++. ....+++|++|+.+..+++.+.+ |+ ..|.|++|+.++..+++..++.......+.+.+..|+..+.| .++
T Consensus 149 ~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 7774 34578888888888889999988 76 579999999999999999999877777888888999999977 788
Q ss_pred HHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 591 DLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 591 di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
.+.+++..|...+ ...|+.+++.+++.
T Consensus 223 ~~~~~~~~~~~~~--------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 223 DALSLTDQAIASG--------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHTTT--------------------TSSBCHHHHHHHSC
T ss_pred HHHHHHHHHHhcc--------------------CceecHHHHHHHhC
Confidence 9999988774211 01488889888764
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.70 E-value=5.6e-16 Score=170.97 Aligned_cols=232 Identities=22% Similarity=0.191 Sum_probs=159.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCceEEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMR 449 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i 449 (791)
+...+++++|.+..++.|..++...+. ...+.+++|+||||||||++|+++++.+... +....++.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 344558899999999999887644211 1456789999999999999999999988543 235778888
Q ss_pred echhhhh------hhH----------hH-HHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHH
Q 003859 450 KGADVLS------KWV----------GE-AERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (791)
Q Consensus 450 ~~~~~~~------~~~----------g~-~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~ 511 (791)
++....+ ... +. ....+..++..+.. ..++||||||+|.+.... ....++..|+.+
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRI 158 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHG
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhc
Confidence 8754221 111 00 22233444444433 347899999999885221 023455555555
Q ss_pred HhccCCCCcEEEeccCCch---hhhhhhhcCCCCccc-cccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcc
Q 003859 512 MDGLDSRGQVVLIGATNRV---DAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV 585 (791)
Q Consensus 512 l~~~~~~~~vivIattn~~---~~Ld~aL~r~gRf~~-~I~~~~Pd~eer~~IL~~~l~~--~~~~~~~~~~~~LA~~t~ 585 (791)
+.......++++|++||.+ ..+++.+.+ ||.. .|.|++|+.+++..||+..+.. .....+.+.+..++..+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5533214578888888887 678889988 8875 8999999999999999988864 344566677788888877
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 586 ---GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 586 ---G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
| .++.+.++|..|+..|..... ..|+.+++..++...
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~~----------------~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRRE----------------ERVRREHVYSARAEI 276 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTTC----------------SCBCHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHH
Confidence 5 577888899988877765321 247888888887665
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.9e-17 Score=173.63 Aligned_cols=203 Identities=7% Similarity=0.082 Sum_probs=146.3
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEEechhhh
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKGADVL 455 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~~~~~~ 455 (791)
|.|+++.++.|..++...+ .-..+.++||+||||||||++++++++++.... ..+.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 7888999999888775532 125678999999999999999999999996532 25788899986543
Q ss_pred hh----------hH------hHHHHHHHHHHHHH--HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC
Q 003859 456 SK----------WV------GEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (791)
Q Consensus 456 ~~----------~~------g~~~~~l~~lf~~a--~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~ 517 (791)
+. +. +.....+..+|..+ ....++||||||+|.|. .+.++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--cc
Confidence 21 11 12345667777764 34567899999999997 2457777877765 34
Q ss_pred CCcEEEeccCCchh----hhhhhhcCCCCcc-ccccCCCCCHHHHHHHHHHHHhcCCC----------------------
Q 003859 518 RGQVVLIGATNRVD----AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKWKQ---------------------- 570 (791)
Q Consensus 518 ~~~vivIattn~~~----~Ld~aL~r~gRf~-~~I~~~~Pd~eer~~IL~~~l~~~~~---------------------- 570 (791)
..+++||+++|..+ .|++++.+ ||. ..|.|++++.++...||+..+.....
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~ 238 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQ 238 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC----
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 56789998888864 36777777 886 57999999999999999988876421
Q ss_pred -------------CCCHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHhh
Q 003859 571 -------------PPSRELKSELAAS---CVGYCGADLKALCTEAAIRAFREK 607 (791)
Q Consensus 571 -------------~~~~~~~~~LA~~---t~G~s~~di~~l~~~A~~~a~~~~ 607 (791)
.++++.++.+|.. ..| -.+-.-++|+.|...|-.+.
T Consensus 239 ~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~ 290 (318)
T 3te6_A 239 NQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDF 290 (318)
T ss_dssp ----CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHH
Confidence 2467777777774 333 23444466888888776643
No 49
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=3.6e-17 Score=180.42 Aligned_cols=240 Identities=19% Similarity=0.242 Sum_probs=162.3
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhh-cC-CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh-h
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFAS-YH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~-~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~-~ 457 (791)
|+|++.+++.|...+............ .. ..++.+|||+||||||||++|++||..++ .+|+.+++..+.. .
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAG 91 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHTTCH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHHhcccc
Confidence 799999999999988532211110000 01 12567899999999999999999999983 7888899888764 3
Q ss_pred hHhHH-HHHHHHHHHHH----HhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHHhccC-----------CC
Q 003859 458 WVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLD-----------SR 518 (791)
Q Consensus 458 ~~g~~-~~~l~~lf~~a----~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l~~~~-----------~~ 518 (791)
|+|.. ...+..+|..+ ....++||||||+|.+.+.+.... ......+++.|+.+|++.. ..
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 77765 55667777665 334577999999999987653322 1223458999999998421 01
Q ss_pred CcEEEeccCCc--------h----------------------------------------hh-----hhhhhcCCCCccc
Q 003859 519 GQVVLIGATNR--------V----------------------------------------DA-----IDGALRRPGRFDR 545 (791)
Q Consensus 519 ~~vivIattn~--------~----------------------------------------~~-----Ld~aL~r~gRf~~ 545 (791)
..+++|+|||. . .. +.++|.. ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 12344455544 1 11 5778887 9999
Q ss_pred cccCCCCCHHHHHHHHHH----HHh---------cCCCCCCHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhhCCC
Q 003859 546 EFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREKYPQ 610 (791)
Q Consensus 546 ~I~~~~Pd~eer~~IL~~----~l~---------~~~~~~~~~~~~~LA~~--t~G~s~~di~~l~~~A~~~a~~~~~~~ 610 (791)
++.|++|+.+++..|+.. ++. +..+.++.++++.|+.. ...+..++|.+++.+++..++.+....
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999885 222 22344678888888864 355667999999999998888764321
Q ss_pred ccCCCccccccccccceeHHHHHHHh
Q 003859 611 VYTSDDKFLIDVDSVTVEKYHFIEAM 636 (791)
Q Consensus 611 ~~~~~~~~~~~~~~~~lt~~df~~Al 636 (791)
. +...+.|+.+++...+
T Consensus 330 ----~-----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 330 ----E-----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp ----C-----CSEEEECHHHHTTCCS
T ss_pred ----c-----CCceeEEcHHHHhCcC
Confidence 0 1124457776666544
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.8e-18 Score=189.20 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=92.3
Q ss_pred cccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHH
Q 003859 647 ATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 647 ~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
.....|.++|++||||+.+++++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|+++|..
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~---Pl~~pe~f~~~Gi~---------~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVEL---PLTHPELYEEMGIK---------PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHH---HHHCCHHHHHHTCC---------CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHH---HHhCHHHHHhCCCC---------CCCCCceECCCCchHHHHHHHHHHH
Confidence 33456899999999999888888888777 88899999999764 3559999999999999777777765
Q ss_pred H----cCchhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhcccccccccc
Q 003859 727 Y----MNWRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSS 776 (791)
Q Consensus 727 ~----~~~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~ 776 (791)
+ +.+..+.+.. .--.+++.+|..|+..+||||||||||+++..+......
T Consensus 240 ~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~ 297 (437)
T 4b4t_I 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG 297 (437)
T ss_dssp HTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS
T ss_pred hCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC
Confidence 3 2233333322 223677888899999999999999999999998765543
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.1e-18 Score=191.27 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=95.9
Q ss_pred cccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHH
Q 003859 641 PAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRI 720 (791)
Q Consensus 641 p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la 720 (791)
|..........|.++|++||||..+++++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~---pl~~p~~f~~~g~~---------~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIEL---PLKNPEIFQRVGIK---------PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCC---------CCCEEEEESCTTSSHHHHH
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHH---HHhCHHHHHhCCCC---------CCCeEEEECCCCCcHHHHH
Confidence 44444455567999999999999999888888777 88999999999764 3559999999999999777
Q ss_pred HHHHHHH----cCchhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccccccccc
Q 003859 721 ILGLQFY----MNWRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSI 777 (791)
Q Consensus 721 ~~~~~~~----~~~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~ 777 (791)
+++|..+ +.+....+.. .-..+++.+|..|+..+||||||||||+++..+...+...
T Consensus 233 kAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~ 297 (437)
T 4b4t_L 233 KAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297 (437)
T ss_dssp HHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSS
T ss_pred HHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCc
Confidence 7777653 2223233221 2236778888999999999999999999999886655443
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.69 E-value=3.2e-16 Score=177.05 Aligned_cols=210 Identities=19% Similarity=0.213 Sum_probs=150.0
Q ss_pred CCCCCCccCCcHHHH---HHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 374 ESVSFDDIGGLSEYI---DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k---~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+.+|++++|++.++ ..|...+.. ....++|||||||||||+||++||+.+. ..|+.++
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~-----~~f~~l~ 82 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYAN-----ADVERIS 82 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEE
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEE
Confidence 457899999999999 777777654 2236899999999999999999999884 6677777
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 451 GADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 451 ~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
+..... ..++.+|..+. ...+.||||||||.|.. ..+..|+..|+. +.++||++
T Consensus 83 a~~~~~-------~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 83 AVTSGV-------KEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED----GTITFIGA 140 (447)
T ss_dssp TTTCCH-------HHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEE
T ss_pred eccCCH-------HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc----CceEEEec
Confidence 643321 22333443333 34678999999998842 234557777773 45666665
Q ss_pred C--CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 527 T--NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-------WKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 527 t--n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~-------~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
| |....++++|.+ ||. ++.|++|+.+++..||+..+.. ....++.+.+..|+..+.| ..+.+.+++.
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 5 445679999999 986 6789999999999999999876 3455788888999988665 6677888888
Q ss_pred HHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccccc
Q 003859 598 EAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (791)
Q Consensus 598 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 641 (791)
.|+..+... ......||.+++..++.....
T Consensus 217 ~a~~~a~~~--------------~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 217 MMADMAEVD--------------DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp HHHHHSCBC--------------TTSCEECCHHHHHHHHTCCCC
T ss_pred HHHHhcccc--------------cCCCCccCHHHHHHHHhhhhh
Confidence 776543211 002235899999999876543
No 53
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.1e-18 Score=188.92 Aligned_cols=119 Identities=9% Similarity=-0.003 Sum_probs=93.0
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH--
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY-- 727 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~-- 727 (791)
..|+|+|.+||||+.+++++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|+++|..+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~---pl~~pe~f~~~Gi~---------pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVEL---PLLSPERFATLGID---------PPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHH---HHHCHHHHHHHTCC---------CCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHH---HhcCHHHHHHCCCC---------CCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 45899999999999888888888766 88899999999764 35599999999999997777776643
Q ss_pred --cCchhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhcccccccccccccc
Q 003859 728 --MNWRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFGG 780 (791)
Q Consensus 728 --~~~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~~ 780 (791)
+.+....+.. ..-.+++.+|..|+..+||||||||||+++..+.....+.+..
T Consensus 270 ~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~ 328 (467)
T 4b4t_H 270 TFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNE 328 (467)
T ss_dssp EEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGH
T ss_pred CeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHH
Confidence 2223333322 2236788889999999999999999999999987766554443
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=9.3e-17 Score=183.00 Aligned_cols=195 Identities=25% Similarity=0.297 Sum_probs=143.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEE
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYM 448 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~ 448 (791)
.+.+|++|+|.+..+..|..++.. ....++||+||||||||++|++||+.+.... ....++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 345789999999999999888754 3456899999999999999999999985421 2456777
Q ss_pred EechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCC
Q 003859 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn 528 (791)
+++. ..+.|.....++.+|..+....++||||| . .....+.|+..| ..+.+.||++||
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L----~~g~v~vI~at~ 299 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL----ARGELQCIGATT 299 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECC
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh----cCCCEEEEecCC
Confidence 7666 66778888888999999998889999999 1 112223333333 366899999999
Q ss_pred chh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHccCCC-----HHHHHH
Q 003859 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYC-----GADLKA 594 (791)
Q Consensus 529 ~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~----~~~~~~~~~~~~LA~~t~G~s-----~~di~~ 594 (791)
..+ .++++|.+ ||. .|.|+.|+.+++..||+.++.. ....++...+..++..+.+|. +..+..
T Consensus 300 ~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred HHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 876 58999999 997 5999999999999999988876 466678888888888765554 568888
Q ss_pred HHHHHHHHHHHh
Q 003859 595 LCTEAAIRAFRE 606 (791)
Q Consensus 595 l~~~A~~~a~~~ 606 (791)
++..|+..+..+
T Consensus 377 ll~~a~~~~~~~ 388 (468)
T 3pxg_A 377 LIDEAGSKVRLR 388 (468)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888766554
No 55
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.6e-18 Score=189.78 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=94.4
Q ss_pred cccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHH
Q 003859 641 PAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRI 720 (791)
Q Consensus 641 p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la 720 (791)
|..........|.++|.+|+||..+++++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~---pl~~pe~f~~~g~~---------~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVL---PMKRADKFKDMGIR---------APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHH---HHHCSHHHHHHCCC---------CCCEEEEESCTTSSHHHHH
T ss_pred chhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHH---HHhCHHHHHhCCCC---------CCCeeEEECcCCCCHHHHH
Confidence 33333344456899999999999998888888766 88999999998764 3559999999999999777
Q ss_pred HHHHHHH----cCchhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhcccccccccc
Q 003859 721 ILGLQFY----MNWRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSS 776 (791)
Q Consensus 721 ~~~~~~~----~~~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~ 776 (791)
+++|..+ +.+..+.+.. .-..+++.+|..|+..+||||||||||+++..+.....+
T Consensus 233 kAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~ 296 (434)
T 4b4t_M 233 RACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS 296 (434)
T ss_dssp HHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGG
T ss_pred HHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCC
Confidence 7777653 2233333322 223678888889999999999999999999988665443
No 56
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.67 E-value=4.9e-16 Score=173.71 Aligned_cols=242 Identities=18% Similarity=0.234 Sum_probs=164.4
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCC-CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh-h
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHI-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~-~ 457 (791)
.|+|++++|..|..++..+...+.++..+.. .++.++||+||||||||++|++||..++ ++|+.+++..+.. .
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~-----~~~~~v~~~~~~~~g 90 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC---
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC-----CCceeecchhhcccc
Confidence 5899999999999998776555555554433 2568999999999999999999999984 6777777766655 3
Q ss_pred hHhH-HHHHHHHHHHHHH--------------------------------------------------------------
Q 003859 458 WVGE-AERQLKLLFEEAQ-------------------------------------------------------------- 474 (791)
Q Consensus 458 ~~g~-~~~~l~~lf~~a~-------------------------------------------------------------- 474 (791)
|+|. .+..++.+|..+.
T Consensus 91 ~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D 170 (444)
T 1g41_A 91 YVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDD 170 (444)
T ss_dssp -CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------------------------------------------------
T ss_pred eeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcc
Confidence 5552 3333333332220
Q ss_pred ----------------------------------------------------------------------------hc-C
Q 003859 475 ----------------------------------------------------------------------------RN-Q 477 (791)
Q Consensus 475 ----------------------------------------------------------------------------~~-~ 477 (791)
.. .
T Consensus 171 ~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~ 250 (444)
T 1g41_A 171 KEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQ 250 (444)
T ss_dssp -------------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence 00 1
Q ss_pred CeEEEEeCCCccCCCCCCchhhh-hHHHHHHHHHHHhccC--------CCCcEEEeccC----CchhhhhhhhcCCCCcc
Q 003859 478 PSIIFFDEIDGLAPVRSSKQEQI-HNSIVSTLLALMDGLD--------SRGQVVLIGAT----NRVDAIDGALRRPGRFD 544 (791)
Q Consensus 478 p~VL~IDEiD~L~~~~~~~~~~~-~~~v~~~Ll~~l~~~~--------~~~~vivIatt----n~~~~Ld~aL~r~gRf~ 544 (791)
..|||+||||.++.......... ..-++..||..|++.. ...+|++|+|+ +.+..+.|.|+. ||.
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~ 328 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLP 328 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCC
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccc
Confidence 23899999999986543222222 3347889999999631 35678888886 234445578988 999
Q ss_pred ccccCCCCCHHHHHHHHH--------H---H--HhcCCCCCCHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHH
Q 003859 545 REFNFPLPGCEARAEILD--------I---H--TRKWKQPPSRELKSELAAS-------CVGYCGADLKALCTEAAIRAF 604 (791)
Q Consensus 545 ~~I~~~~Pd~eer~~IL~--------~---~--l~~~~~~~~~~~~~~LA~~-------t~G~s~~di~~l~~~A~~~a~ 604 (791)
.+|.|+.++.++...|+. . . +.+..+.++.+.+..||.. |...-.+.|..++..++..+.
T Consensus 329 i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~ 408 (444)
T 1g41_A 329 IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 408 (444)
T ss_dssp EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHH
Confidence 999999999999999993 1 1 1234456678888888764 356667788888777766655
Q ss_pred HhhCCCccCCCccccccccccceeHHHHHHHhcc
Q 003859 605 REKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (791)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~ 638 (791)
.+.... ....+.|+.+.+...+..
T Consensus 409 ~~~~~~----------~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 409 FSASDM----------NGQTVNIDAAYVADALGE 432 (444)
T ss_dssp HHGGGC----------TTCEEEECHHHHHHHHTT
T ss_pred hhcccc----------CCCeEEEeHHHHHHhcCc
Confidence 543210 113467888888876643
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=3.5e-16 Score=154.31 Aligned_cols=164 Identities=24% Similarity=0.329 Sum_probs=119.1
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (791)
+..|++++|.++.++.+...+.. ..+.++||+||||||||++|+++++.+.... ....++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 45688999999999998887643 3457899999999999999999999985421 13567777
Q ss_pred echhhh--hhhHhHHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~--~~~~g~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
++..+. ..+.+.....+..++..+.. ..++||||||+|.+........ ...+...|...++ ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~---~~~~~~~l~~~~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc---hHHHHHHHHHhhc----cCCeEEEEe
Confidence 777665 34566667777788876644 4588999999999975432211 1122333334443 456788888
Q ss_pred CCchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHH
Q 003859 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (791)
Q Consensus 527 tn~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL 561 (791)
||.+. .+++++.+ ||. .|.|++|+.+++.+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88876 67899999 997 6999999999998876
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-17 Score=185.26 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=92.7
Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 648 ~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
....|.++|.+||||..+++++.+.+.. |+.+++.|.++|+. ++.|+|||||||||||++|+++|..+
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~---pl~~p~~~~~~g~~---------~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVEL---PLVQADLYEQIGID---------PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCC---------CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHH---HHhCHHHHHhCCCC---------CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456899999999999888888888776 78899999998764 35599999999999998777777653
Q ss_pred ----cCchhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccccccccccc
Q 003859 728 ----MNWRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIYHSSIFG 779 (791)
Q Consensus 728 ----~~~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~~~~~~~ 779 (791)
+.+..+.+.. .....++.+|..|+..+||||||||+|+++..+........+
T Consensus 231 ~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~ 290 (428)
T 4b4t_K 231 KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDR 290 (428)
T ss_dssp TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCC
T ss_pred CCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCCh
Confidence 2223232221 223677888899999999999999999999988765554443
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=1.2e-15 Score=163.81 Aligned_cols=209 Identities=20% Similarity=0.220 Sum_probs=146.0
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh-
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK- 457 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~- 457 (791)
..|+|++.+++.|...+...... ... .-.+..++||+||||||||++|++||..+.... ..++.+++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKH 90 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCCSTT
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC--cceEEeecccccccc
Confidence 35889999999999888652100 000 012234799999999999999999999986432 34666666554321
Q ss_pred ----hHhHHH-----HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC---------CC
Q 003859 458 ----WVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RG 519 (791)
Q Consensus 458 ----~~g~~~-----~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~---------~~ 519 (791)
++|... .....+.........+||||||+|.+. ..++..|+..|+.... ..
T Consensus 91 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 111000 000122233334455899999999873 4577788888875321 13
Q ss_pred cEEEeccCCc--------------------------hhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC-----
Q 003859 520 QVVLIGATNR--------------------------VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----- 568 (791)
Q Consensus 520 ~vivIattn~--------------------------~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~----- 568 (791)
+++||+|||. ...++++|.+ ||+..+.|++|+.+++..|++.++..+
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6779999998 5567888988 999999999999999999999877652
Q ss_pred ----CCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh
Q 003859 569 ----KQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 569 ----~~~~~~~~~~~LA~~t~--G~s~~di~~l~~~A~~~a~~~ 606 (791)
...++.+.+..|+.... ..+.++|.++|..++..++.+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 34567888888888765 678899999999888877654
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.64 E-value=1.4e-15 Score=168.35 Aligned_cols=241 Identities=20% Similarity=0.249 Sum_probs=152.7
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhH------------------hhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDF------------------FASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG 441 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~------------------~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~ 441 (791)
.|+|++.+++.|..++..++..... +.. ...++.++||+||||||||++|++||+.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 4899999999999887432211111 011 123567899999999999999999999883
Q ss_pred CceEEEEEechhhh-hhhHhHH-HHHHHHHHHHH----HhcCCeEEEEeCCCccCCCCCCch---hhhhHHHHHHHHHHH
Q 003859 442 QKVSFYMRKGADVL-SKWVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALM 512 (791)
Q Consensus 442 ~~~~~~~i~~~~~~-~~~~g~~-~~~l~~lf~~a----~~~~p~VL~IDEiD~L~~~~~~~~---~~~~~~v~~~Ll~~l 512 (791)
.+|+.+++..+. ..++|.. ...+..++..+ ....++||||||+|.+...+.... ......+++.|+..|
T Consensus 98 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 98 --IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp --CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHH
T ss_pred --CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHh
Confidence 567777777654 2344432 33344444432 233567999999999976532211 111223788889988
Q ss_pred hccC-------------------CCCcEEEeccCCc-----------------------------------------hhh
Q 003859 513 DGLD-------------------SRGQVVLIGATNR-----------------------------------------VDA 532 (791)
Q Consensus 513 ~~~~-------------------~~~~vivIattn~-----------------------------------------~~~ 532 (791)
++.. ...++++|+++|. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 8531 1244567776652 112
Q ss_pred hhhhhcCCCCccccccCCCCCHHHHHHHHHH----HH---------hcCCCCCCHHHHHHHHHHcc--CCCHHHHHHHHH
Q 003859 533 IDGALRRPGRFDREFNFPLPGCEARAEILDI----HT---------RKWKQPPSRELKSELAASCV--GYCGADLKALCT 597 (791)
Q Consensus 533 Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~----~l---------~~~~~~~~~~~~~~LA~~t~--G~s~~di~~l~~ 597 (791)
+.+.|.+ ||+.+|.|++++.++...|+.. ++ .+..+.++.+.+..|+..+. ....+.|.+++.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 4566777 8888899999999999999862 21 12244567888888888754 367899999999
Q ss_pred HHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcc
Q 003859 598 EAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (791)
Q Consensus 598 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~ 638 (791)
.++..++.+.... ....+.|+.+++..++..
T Consensus 334 ~~~~~~~~~~~~~----------~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 334 DFCLDIMFDLPKL----------KGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHHHTGGGG----------TTSEEEECHHHHTTSSCC
T ss_pred HHHHHHHhhccCC----------CCCEEEEeHHHhcCCCCc
Confidence 9988887754321 123456888888776543
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.4e-15 Score=164.33 Aligned_cols=218 Identities=17% Similarity=0.129 Sum_probs=150.2
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEec
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKG 451 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~ 451 (791)
..+.+|++|+|++.+++.|..++.. ....++||+||||||||++|+++|+.+... .....++.+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 4567899999999999999887643 122359999999999999999999998532 12344566665
Q ss_pred hhhhhhhHhHHHHHHHHHHHH-----------H-HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCC
Q 003859 452 ADVLSKWVGEAERQLKLLFEE-----------A-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRG 519 (791)
Q Consensus 452 ~~~~~~~~g~~~~~l~~lf~~-----------a-~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~ 519 (791)
.+... .......+..+... . ....+.||||||+|.+. ....+.|+..|+... .
T Consensus 98 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~~--~ 162 (353)
T 1sxj_D 98 SDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETYS--G 162 (353)
T ss_dssp SSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT--T
T ss_pred ccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhcC--C
Confidence 54211 11111111111100 0 01235699999999884 234566777777543 3
Q ss_pred cEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 003859 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (791)
Q Consensus 520 ~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A 599 (791)
.+.+|++||.+..+.+++.+ ||. .+.|++|+.++...+|...+......++.+.+..|+..+.|. .+.+.+++..+
T Consensus 163 ~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~ 238 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSA 238 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHT
T ss_pred CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 45666678888899999998 886 789999999999999999988777778889999999998874 55566666666
Q ss_pred HHHHHHhhCCCccCCCccccccccccceeHHHHHHHhc
Q 003859 600 AIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (791)
Q Consensus 600 ~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 637 (791)
+..+..... ...|+.+++..++.
T Consensus 239 ~~~~~~~~~---------------~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 239 SKGAQYLGD---------------GKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHCS---------------CCCCCHHHHHHHHT
T ss_pred HHhcCCCcc---------------CccccHHHHHHHhC
Confidence 554433210 01378888887765
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=4.1e-15 Score=160.35 Aligned_cols=196 Identities=23% Similarity=0.189 Sum_probs=140.9
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..+.+|++++|++.+++.|..++.. ....++||+||||||||++|+++|+.+........++.+++.
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 3567899999999999999988754 122359999999999999999999998544334556677765
Q ss_pred hhhhhhHhHHHHHHHHHHHHH--HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 453 DVLSKWVGEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a--~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
..... ......+..+.... ....+.||||||+|.+. ...++.|+..++.. ...+++|++||.+
T Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 86 DERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSCNYS 150 (327)
T ss_dssp CHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCG
T ss_pred ccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCCc
Confidence 43221 11111111111100 01347899999999884 23456677777743 4467788888888
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
..+.+.+.+ ||. .+.|++|+.++...+|...+...+..++.+.+..|+..+.| +.+.+.+++..+.
T Consensus 151 ~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 151 SKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp GGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred cccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 889999988 886 78999999999999999999887777888888889988866 5555556655443
No 63
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=7.4e-16 Score=177.80 Aligned_cols=196 Identities=19% Similarity=0.190 Sum_probs=133.2
Q ss_pred cCCCCCCCccCCcHHHHHHHHHHHHccc-CChhHhhhcCC---CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 372 VDESVSFDDIGGLSEYIDALKEMVFFPL-LYPDFFASYHI---TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 372 ~~~~~~~~~l~G~e~~k~~L~~~v~~pl-~~~~~~~~~g~---~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
...+.+|++|+|++.+++.|..++.... ..+..|...|. ..+.++||+||||||||++|++||++++ ..++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i 106 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDIL 106 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEE
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEE
Confidence 3467799999999999999999986521 11122333333 2567999999999999999999999983 6788
Q ss_pred EEechhhhhhhHhHHHH-------HHHHHHHHH-----HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc
Q 003859 448 MRKGADVLSKWVGEAER-------QLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL 515 (791)
Q Consensus 448 ~i~~~~~~~~~~g~~~~-------~l~~lf~~a-----~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~ 515 (791)
.+++..+.......... .+..+|..+ ....++||||||+|.|.... ...+..|+.+++.
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~- 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRK- 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHH-
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHh-
Confidence 88887655433211100 012223322 12457899999999997532 1234556666663
Q ss_pred CCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 003859 516 DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (791)
Q Consensus 516 ~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G 586 (791)
....+++|+++.....+.+ +. ++...|.|++|+.+++..+|...+......++.+.+..|+..+.|
T Consensus 178 -~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 178 -TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp -CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred -cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2345666665554444543 44 344589999999999999999888776667777888899988866
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=2.9e-15 Score=165.62 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=150.6
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----C-ceEEEEEe
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----Q-KVSFYMRK 450 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~-~~~~~~i~ 450 (791)
.+++++|.+..++.|..++...+. -..+.++||+||||||||++|+++++.+.... . ...++.++
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 347899999999999988755221 14456899999999999999999999885431 1 46777777
Q ss_pred chhhh-h------hhHhHH------------HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHH-HHHHHH
Q 003859 451 GADVL-S------KWVGEA------------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSI-VSTLLA 510 (791)
Q Consensus 451 ~~~~~-~------~~~g~~------------~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v-~~~Ll~ 510 (791)
+.... . ...... ...+..++..+... +.||||||+|.+.... ...+ +..|+.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~-------~~~~~l~~l~~ 160 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRR-------GGDIVLYQLLR 160 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHST-------TSHHHHHHHHT
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCC-------CCceeHHHHhc
Confidence 65533 1 111111 22233344433333 3499999999885321 1222 333333
Q ss_pred HHhccCCCCcEEEeccCCch---hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhc-C-CCCCCHHHHHHHHHHcc
Q 003859 511 LMDGLDSRGQVVLIGATNRV---DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-W-KQPPSRELKSELAASCV 585 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~---~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~-~-~~~~~~~~~~~LA~~t~ 585 (791)
+. .++.||++||.+ ..+++.+.+ ||...|.|++|+.++...||+.++.. + ....+.+.+..++..+.
T Consensus 161 ~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 161 SD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA 232 (384)
T ss_dssp SS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH
T ss_pred CC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH
Confidence 22 678888899886 678899988 88779999999999999999998863 2 34567777788888877
Q ss_pred C--CCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 586 G--YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 586 G--~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
+ -.++.+.++|..|...|. . ...|+.+++..++....
T Consensus 233 ~~~G~~r~a~~~l~~a~~~a~--~----------------~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 233 KEHGDARKAVNLLFRAAQLAS--G----------------GGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TTCCCHHHHHHHHHHHHHHTT--S----------------SSCCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhc--C----------------CCccCHHHHHHHHHHHh
Confidence 2 245667777877766553 1 12478888888876653
No 65
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.62 E-value=4.2e-15 Score=160.95 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=135.4
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..+.+|++++|++.++..|..++.. -..+..+|++||||||||++|+++|+.++ ..++.+++.
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~ 82 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGS 82 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETT
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccc
Confidence 3567899999999999999998864 14556788889999999999999999984 778888876
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhc-----CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQRN-----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~~-----~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
... ...++..+...... .+.||||||+|.+.+ ......|+..++.. ...+.+|++|
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~ 143 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITA 143 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 532 12333333332222 468999999998841 34556677777743 3467888899
Q ss_pred CchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHH-------hcCCCCCCH-HHHHHHHHHccCCCHHHHHHHHHHH
Q 003859 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHT-------RKWKQPPSR-ELKSELAASCVGYCGADLKALCTEA 599 (791)
Q Consensus 528 n~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l-------~~~~~~~~~-~~~~~LA~~t~G~s~~di~~l~~~A 599 (791)
|.+..++++|.+ ||. .+.|++|+.+++..|++.++ .......+. +.+..|+..+.|-... +.+++..+
T Consensus 144 n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~ 219 (324)
T 3u61_B 144 NNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSY 219 (324)
T ss_dssp SSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHH
T ss_pred CCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence 999999999999 995 79999999998776655433 334556666 7788899887764433 44444433
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=8.4e-15 Score=161.26 Aligned_cols=231 Identities=19% Similarity=0.214 Sum_probs=157.3
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-ceEEEEEech
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KVSFYMRKGA 452 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~~~~~i~~~ 452 (791)
+...+++++|.+..++.|..++...+. -..+.+++|+||+|||||+|+++++..+..... ...++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 445568899999999999887644211 144568999999999999999999998854422 3566677764
Q ss_pred hhhh------hhH----------h-HHHHHHHHHHHHHHhcC-CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc
Q 003859 453 DVLS------KWV----------G-EAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (791)
Q Consensus 453 ~~~~------~~~----------g-~~~~~l~~lf~~a~~~~-p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~ 514 (791)
.... ... + .....+..++..+.... |+||||||++.+.... ...++..|+.+++.
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~l~~l~~~~~~ 158 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDILYKLSRINSE 158 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHHHHHHhhchhh
Confidence 3221 100 0 02223444444444433 8999999999885321 13456677777764
Q ss_pred cCCCCcEEEeccCCch---hhhhhhhcCCCCcc-ccccCCCCCHHHHHHHHHHHHhc-C-CCCCCHHHHHHHHHHcc---
Q 003859 515 LDSRGQVVLIGATNRV---DAIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRK-W-KQPPSRELKSELAASCV--- 585 (791)
Q Consensus 515 ~~~~~~vivIattn~~---~~Ld~aL~r~gRf~-~~I~~~~Pd~eer~~IL~~~l~~-~-~~~~~~~~~~~LA~~t~--- 585 (791)
+ ...++.+|++|+.+ ..+++.+.+ ||. ..|.|++++.++..+||...+.. . ....+.+.+..++..+.
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 4 34578888888876 457777877 775 48999999999999999987753 2 34567777788888776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 586 GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 586 G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
| .+..+.++|..|+..+..... ..|+.+++..++....
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~~~----------------~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERMKD----------------TKVKEEYVYMAKEEIE 273 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHTTC----------------SSCCHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhcCC----------------CccCHHHHHHHHHHHh
Confidence 5 566677788888877765322 2478888888776553
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.61 E-value=2.3e-15 Score=161.71 Aligned_cols=195 Identities=24% Similarity=0.171 Sum_probs=138.5
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..+.+|++++|++.+++.|..++.. ....++||+||||||||++|+++|+.+........++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 3567899999999999998876533 122349999999999999999999998544434556677765
Q ss_pred hhhhhhHhHHHHHHHHHHHHHH--hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQ--RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~--~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
...+. ......+..+..... ...+.||||||+|.+. ....+.|+..++. ....+++|++||.+
T Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 78 DERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM--YSKSCRFILSCNYV 142 (319)
T ss_dssp STTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS--SSSSEEEEEEESCG
T ss_pred cccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCCh
Confidence 43221 111111111110100 1347899999999884 2344556666663 34568888889999
Q ss_pred hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Q 003859 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (791)
Q Consensus 531 ~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A 599 (791)
..+.+++.+ ||. .+.|++|+.+++..+|..++...+..++.+.+..|+..+.| ..+.+.+++..+
T Consensus 143 ~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 143 SRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp GGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred hhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999998 886 79999999999999999999888888888888888877765 445555555543
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.61 E-value=3.8e-15 Score=162.55 Aligned_cols=223 Identities=22% Similarity=0.231 Sum_probs=144.0
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc----CCc------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQK------ 443 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~------ 443 (791)
+..+|++|+|.+.++..+...+.. ....++||+||||||||++|++||+.+... ...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 567899999999988776444332 123469999999999999999999987521 000
Q ss_pred ------------------eEEEEEechhhhhhhHhHHHHHHHHHHHHH---------HhcCCeEEEEeCCCccCCCCCCc
Q 003859 444 ------------------VSFYMRKGADVLSKWVGEAERQLKLLFEEA---------QRNQPSIIFFDEIDGLAPVRSSK 496 (791)
Q Consensus 444 ------------------~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a---------~~~~p~VL~IDEiD~L~~~~~~~ 496 (791)
..++.+.........+|.. .+...+... ....++||||||++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 0122111111011111110 001111111 11236799999999874
Q ss_pred hhhhhHHHHHHHHHHHhcc----CC-------CCcEEEeccCCchh-hhhhhhcCCCCccccccCCCC-CHHHHHHHHHH
Q 003859 497 QEQIHNSIVSTLLALMDGL----DS-------RGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLP-GCEARAEILDI 563 (791)
Q Consensus 497 ~~~~~~~v~~~Ll~~l~~~----~~-------~~~vivIattn~~~-~Ld~aL~r~gRf~~~I~~~~P-d~eer~~IL~~ 563 (791)
..++..|+..|+.- .. ...++||+|+|... .++++|++ ||...+.|++| +.+.+..|++.
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 34566777777641 11 13689999999744 79999999 99888999999 67777788866
Q ss_pred HH-----------------------------hcCCCCCCHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 564 HT-----------------------------RKWKQPPSRELKSELAASCVGY---CGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 564 ~l-----------------------------~~~~~~~~~~~~~~LA~~t~G~---s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
.+ ......++.+.+..|+..+.+. +.+.+.++++.|...|..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~--- 307 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA--- 307 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC---
Confidence 31 1123456777777777766542 579999999998888876532
Q ss_pred cCCCccccccccccceeHHHHHHHhcccc
Q 003859 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 612 ~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
..|+.+|+..|+..+-
T Consensus 308 -------------~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 308 -------------TAVGRDHLKRVATMAL 323 (350)
T ss_dssp -------------SBCCHHHHHHHHHHHH
T ss_pred -------------CcCCHHHHHHHHHHHH
Confidence 2488999998876543
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=6.7e-15 Score=158.43 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=140.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+..|++++|++.+++.|..++.. + ..+ ++||+||+|+|||++|+++|+.+........++.+++..
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 466789999999999999988754 1 223 399999999999999999999985443345566776654
Q ss_pred hhhhhHhHHHHHHHHHHHHHH-------hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 454 VLSKWVGEAERQLKLLFEEAQ-------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 454 ~~~~~~g~~~~~l~~lf~~a~-------~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
..+ ...++.++.... ...+.||||||+|.+. ....+.|+..++. ....+++|++
T Consensus 83 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~il~ 143 (323)
T 1sxj_B 83 DRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMEL--YSNSTRFAFA 143 (323)
T ss_dssp CCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHH--TTTTEEEEEE
T ss_pred ccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhc--cCCCceEEEE
Confidence 321 123344444333 2337899999999884 2335567777764 3456777778
Q ss_pred CCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 527 tn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
||.+..+.+.+.+ ||. .+.|++|+.++...+|..++...+...+.+.+..|+..+.|. ++.+.+++..+.
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~~~ 213 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQSTV 213 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 8888899999998 886 799999999999999999888777777888888899888764 445555554443
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.60 E-value=4.4e-14 Score=153.95 Aligned_cols=214 Identities=18% Similarity=0.224 Sum_probs=152.1
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..+|++++|.+.++..|...+.... ..+ .++.+++|+|||||||||||++||..++ +.+...++..+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~-----~~~~~~sg~~~ 87 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQ-----TNIHVTSGPVL 87 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHT-----CCEEEEETTTC
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEechHh
Confidence 4578899999999988877764310 001 3456799999999999999999999985 34444444333
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC----------------C
Q 003859 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------R 518 (791)
Q Consensus 455 ~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~----------------~ 518 (791)
... ..+..++.. .....|+||||++.+.+ .+...|+..++.... -
T Consensus 88 ~~~------~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 88 VKQ------GDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp CSH------HHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------
T ss_pred cCH------HHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 211 112222221 23457999999998852 223334444432210 1
Q ss_pred CcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 003859 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (791)
Q Consensus 519 ~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~ 598 (791)
..+.+|++|+.+..|++.+++ ||...+.|++|+.+++.+||+.........++.+.+..||..+.| +++.+.++++.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 246777889999999999999 998889999999999999999998888888888888999998887 56888899998
Q ss_pred HHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 599 AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 599 A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
+...|..... ..|+.+++..++...
T Consensus 226 ~~~~a~~~~~----------------~~It~~~v~~al~~~ 250 (334)
T 1in4_A 226 VRDMLTVVKA----------------DRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHTC----------------SSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCC----------------CCcCHHHHHHHHHHh
Confidence 8777765432 137777777777654
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=4.3e-14 Score=156.20 Aligned_cols=228 Identities=17% Similarity=0.110 Sum_probs=156.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPR--GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~--~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
+...+++++|.+..++.|..++...+. + ..+. +++|+||||||||+++++++..+.... ...++.+++
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~ 81 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYING 81 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEET
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeC
Confidence 344557899999999999988755211 1 2334 899999999999999999999985431 245666665
Q ss_pred hhhh------hhhH----------h-HHHHHHHHHHHHHH-hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHh
Q 003859 452 ADVL------SKWV----------G-EAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (791)
Q Consensus 452 ~~~~------~~~~----------g-~~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~ 513 (791)
.... .... + .....+..+..... ...|.||||||++.+ ....+..|+.+++
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQ 150 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHH
Confidence 4322 1110 0 01122222222222 245889999999987 2456677777776
Q ss_pred ccCC--CCcEEEeccCCch---hhhhhhhcCCCCccc-cccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHcc
Q 003859 514 GLDS--RGQVVLIGATNRV---DAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV 585 (791)
Q Consensus 514 ~~~~--~~~vivIattn~~---~~Ld~aL~r~gRf~~-~I~~~~Pd~eer~~IL~~~l~~--~~~~~~~~~~~~LA~~t~ 585 (791)
.+.. ..++.||++||.+ ..+++.+.+ ||.. .|.|++++.++...+|...+.. ....++.+.+..++..+.
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 4432 1478888888876 557777777 8765 7999999999999999988764 234567888888999884
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccc
Q 003859 586 --------GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (791)
Q Consensus 586 --------G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 640 (791)
+-.++.+.++|..|+..|..+.. ..|+.+++..++....
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~----------------~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGR----------------KHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTC----------------SSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCC----------------CCcCHHHHHHHHHHHh
Confidence 23678888999988887766432 2478888888876654
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=1.5e-14 Score=157.05 Aligned_cols=213 Identities=21% Similarity=0.160 Sum_probs=143.7
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh--
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-- 454 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~-- 454 (791)
.+++|+|++.++..+...+.. ..++||+||||||||+||+++|+.++ ..++.+++...
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~-----~~~~~i~~~~~~~ 84 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMD-----LDFHRIQFTPDLL 84 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTT-----CCEEEEECCTTCC
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEecCCCCC
Confidence 346799999999888776543 24799999999999999999999884 34444444211
Q ss_pred hhhhHhHHH-HHHHHHHHHHHhcC---CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc---------CCCCcE
Q 003859 455 LSKWVGEAE-RQLKLLFEEAQRNQ---PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL---------DSRGQV 521 (791)
Q Consensus 455 ~~~~~g~~~-~~l~~lf~~a~~~~---p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~---------~~~~~v 521 (791)
.....+... ......|. .... .+||||||++.+. ...++.|+..|+.. .....+
T Consensus 85 ~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 85 PSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp HHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred hhhcCCceeecCCCCceE--eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 011111000 00000000 0011 2699999999763 45566777777642 123467
Q ss_pred EEeccCCchh-----hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC----------------------CCCCCH
Q 003859 522 VLIGATNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----------------------KQPPSR 574 (791)
Q Consensus 522 ivIattn~~~-----~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~----------------------~~~~~~ 574 (791)
+||+|+|..+ .++++|++ ||...+.|+.|+.+++.+||+..+... ...++.
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 229 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISE 229 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCH
T ss_pred EEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCH
Confidence 8888888543 38999999 998889999999999999999887653 334566
Q ss_pred HHHHHHHHHc-------------------cCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHH
Q 003859 575 ELKSELAASC-------------------VGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEA 635 (791)
Q Consensus 575 ~~~~~LA~~t-------------------~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~A 635 (791)
++++.++..+ .|.+++.+..+++.|...|..... ..|+.+|+..+
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~----------------~~v~~~dv~~~ 293 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR----------------DYVLPEDIKEV 293 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC----------------SBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHH
Confidence 6666665432 256899999999988887766432 24889999988
Q ss_pred hcccc
Q 003859 636 MSTIT 640 (791)
Q Consensus 636 l~~~~ 640 (791)
+..+-
T Consensus 294 ~~~vl 298 (331)
T 2r44_A 294 AYDIL 298 (331)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 86543
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.59 E-value=1.1e-14 Score=160.22 Aligned_cols=192 Identities=20% Similarity=0.196 Sum_probs=140.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCc----------
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (791)
.+.+|++++|++.+++.|...+... ..+..+||+||+|||||++|+++|+.+......
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4567899999999999999887541 344578999999999999999999988532110
Q ss_pred ---------eEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHH
Q 003859 444 ---------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (791)
Q Consensus 444 ---------~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~ 510 (791)
..++.++.... .....++.++..+.. ..+.||||||+|.+. ...++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHH
Confidence 01222322210 001123445544432 336799999999873 345667788
Q ss_pred HHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHH
Q 003859 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (791)
Q Consensus 511 ~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~ 590 (791)
.++. ....+++|++|+.+..+.+.+.+ |+ ..+.|++|+.++...+|..++...+...+.+.+..|+..+.| +++
T Consensus 142 ~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 8874 34578888888888888899988 87 579999999999999999998877777888888889988876 677
Q ss_pred HHHHHHHHHH
Q 003859 591 DLKALCTEAA 600 (791)
Q Consensus 591 di~~l~~~A~ 600 (791)
.+.+++..+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.58 E-value=5.1e-15 Score=178.66 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=147.2
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCC---CC-ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT---PP-RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~---~~-~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..|+|++.++..|...+.... .++. .| .++||+||||||||++|++||+.+... ..+|+.++++.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~ 560 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEY 560 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGG
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhc
Confidence 468999999999999886531 1222 22 379999999999999999999998533 357888898888
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---------CCCcEEEec
Q 003859 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIG 525 (791)
Q Consensus 455 ~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---------~~~~vivIa 525 (791)
...+... ...++..+....++|||||||+.+ ...+++.|+..|+... ...+++||+
T Consensus 561 ~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 561 MEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp CSSCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ccccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 7654433 122333444556789999999876 4578888998888632 224678999
Q ss_pred cCCchhh------------hhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHHc
Q 003859 526 ATNRVDA------------IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---------KQPPSRELKSELAASC 584 (791)
Q Consensus 526 ttn~~~~------------Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~---------~~~~~~~~~~~LA~~t 584 (791)
|||.+.. +.+.|.+ ||+.+|.|++|+.+++..|++.++..+ .+.++.+.++.|+...
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhC
Confidence 9995332 6788888 998899999999999999999877542 3456788888887753
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHh
Q 003859 585 --VGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 585 --~G~s~~di~~l~~~A~~~a~~~ 606 (791)
..+..+.|.+++.++...++.+
T Consensus 704 ~~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 704 VDLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp CCTTTTTTTHHHHHHHHTHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHH
Confidence 4467788999998887766654
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=8.1e-15 Score=144.16 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=113.7
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-----CceEEEEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (791)
+..|++++|.+..+..+.+.+.. ..+.++||+||||||||++|+++++.+.... ....++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45688999999999988887643 3456899999999999999999999985421 24566777
Q ss_pred echhhhh--hhHhHHHHHHHHHHHHHHhc-CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 450 KGADVLS--KWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 450 ~~~~~~~--~~~g~~~~~l~~lf~~a~~~-~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
++..+.. .+.+.....+..++..+... .+.||||||+|.+.+.+.... ....+.+.|...++ ...++||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHH----TTCSCEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHh----cCCeeEEEe
Confidence 7666553 34566666777777776655 678999999999975443111 11233444444444 456788889
Q ss_pred CCchh-----hhhhhhcCCCCccccccCCCCC
Q 003859 527 TNRVD-----AIDGALRRPGRFDREFNFPLPG 553 (791)
Q Consensus 527 tn~~~-----~Ld~aL~r~gRf~~~I~~~~Pd 553 (791)
+|.+. .++++|.+ ||.. |.|+.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 98875 58899999 9984 8899885
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=1.4e-14 Score=174.90 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=148.8
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCC----CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT----PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~ 454 (791)
..|+|++.++..|...+... ..|+. +..++||+||||||||++|++||..++ ..|+.++++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~ 524 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY 524 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhh
Confidence 35899999999998877542 22332 334799999999999999999999983 67888888776
Q ss_pred hhh------------hHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCC-----
Q 003859 455 LSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----- 517 (791)
Q Consensus 455 ~~~------------~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~----- 517 (791)
... |+|.... ..+...+....++|||||||+.+ ...+++.|+..|+...-
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g 591 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNG 591 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTT
T ss_pred cchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCC
Confidence 542 4443222 12344445566789999999876 45688889998884211
Q ss_pred ----CCcEEEeccCCchh-------------------------hhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcC
Q 003859 518 ----RGQVVLIGATNRVD-------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW 568 (791)
Q Consensus 518 ----~~~vivIattn~~~-------------------------~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~ 568 (791)
..+++||+|||... .+.++|++ ||+.+|.|++|+.+++..|++.++..+
T Consensus 592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 14688999999743 57788988 999899999999999999999887632
Q ss_pred ---------CCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHh
Q 003859 569 ---------KQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 569 ---------~~~~~~~~~~~LA~~t--~G~s~~di~~l~~~A~~~a~~~ 606 (791)
.+.++.+.+..|+... ..+..+.|.++++.++..++.+
T Consensus 670 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 670 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 3456788888888765 3566889999988887765543
No 77
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.57 E-value=1.1e-14 Score=184.38 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=113.6
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCC----------hhHhhh------cC------------CCCCceEEEEcCCCCh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLY----------PDFFAS------YH------------ITPPRGVLLCGPPGTG 425 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~----------~~~~~~------~g------------~~~~~~vLL~GppGtG 425 (791)
..++|++|+|++++|..+.+.+.+|+.+ ++.|.. .| ++..+.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999998844 556665 22 2333449999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEEec--hhhh--------hhhHhH----HHHHHHHHHHHHHhcCCeEEEEeCCCccCC
Q 003859 426 KTLIARALACAASKAGQKVSFYMRKG--ADVL--------SKWVGE----AERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 426 KT~laralA~~l~~~~~~~~~~~i~~--~~~~--------~~~~g~----~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~ 491 (791)
||+||+++|.+....+....|+.+.. ..++ .+|+++ .++.++.+|..|+...||+||+|++++|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 99999999999887766677776654 2333 455566 889999999999999999999999999998
Q ss_pred CCC---C-c--hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 492 VRS---S-K--QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 492 ~~~---~-~--~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
.+. . . +.....+++++++..|+++....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 732 1 1 1245667899999999987666778887 56653
No 78
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.53 E-value=5.7e-16 Score=195.81 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=54.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhhhHhH--------HHHHHHHHHHHH----H
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVGE--------AERQLKLLFEEA----Q 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~~~g~--------~~~~l~~lf~~a----~ 474 (791)
|+.+...++|+||||+|||+||..+|..+...+..+.|+..... .+.....+. ....+..++..+ .
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 47788899999999999999999999998876656666543321 111111110 000122233333 3
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...|.+||||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 56789999999999874
No 79
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=5.4e-14 Score=153.88 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=132.4
Q ss_pred CCCCCCCccCCcHHHHHHHHHHH-HcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-ce------
Q 003859 373 DESVSFDDIGGLSEYIDALKEMV-FFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KV------ 444 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v-~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~------ 444 (791)
..+.+|++++|++.+++.|..++ .. + ..+. +||+||+|||||+++++||+.+..... .+
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 35678999999999999887765 21 1 2334 999999999999999999997632211 00
Q ss_pred -----------------EEEEEechhhhhhhHhHHHHHHHHHHHHHH--------------hcCCeEEEEeCCCccCCCC
Q 003859 445 -----------------SFYMRKGADVLSKWVGEAERQLKLLFEEAQ--------------RNQPSIIFFDEIDGLAPVR 493 (791)
Q Consensus 445 -----------------~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~--------------~~~p~VL~IDEiD~L~~~~ 493 (791)
.++.++....... . ...++.++..+. ...|.||||||++.|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNN---D-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----C---C-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC---
T ss_pred ecccccccceeeeecccceEEecHhhcCCc---c-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC---
Confidence 1222332211100 0 002333333321 2357799999999862
Q ss_pred CCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCC
Q 003859 494 SSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS 573 (791)
Q Consensus 494 ~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~ 573 (791)
....+.|+..|+.. ...+.+|.+|+.+..+.+.+.+ || ..+.|++|+.++...+|+..+...+...+
T Consensus 148 --------~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 148 --------KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp --------HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred --------HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 34456677777754 3357778888888889999998 88 67999999999999999999887776667
Q ss_pred -HHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 003859 574 -RELKSELAASCVGYCGADLKALCTEAAI 601 (791)
Q Consensus 574 -~~~~~~LA~~t~G~s~~di~~l~~~A~~ 601 (791)
.+.+..|+..+.| +.+++.++++.+..
T Consensus 215 ~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 215 TKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 7778888888866 55666666665543
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.5e-13 Score=149.91 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=131.6
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 373 ~~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..+.+|++++|++.+++.|...+.. | ..+ ++||+||||||||++|+++|+.+........++.++..
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 4567899999999999999887754 1 223 49999999999999999999998654444556666665
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHh------cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEecc
Q 003859 453 DVLSKWVGEAERQLKLLFEEAQR------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (791)
Q Consensus 453 ~~~~~~~g~~~~~l~~lf~~a~~------~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIat 526 (791)
...+ . ..++..+..... ..+.|++|||+|.+. ....+.|+..++.. ...+.+|++
T Consensus 86 ~~~~--~----~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~ 146 (340)
T 1sxj_C 86 DDRG--I----DVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVL 146 (340)
T ss_dssp SCCS--H----HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred cccc--H----HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC--CCCeEEEEE
Confidence 4211 1 122233322221 236799999999884 23456677888754 345667778
Q ss_pred CCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccC
Q 003859 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (791)
Q Consensus 527 tn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G 586 (791)
||.+..+.+++.+ ||. .+.|+.++.++...++...+......++...+..++..+.|
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888999999998 886 78999999999999999988766677788877888877765
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.49 E-value=8.2e-14 Score=170.08 Aligned_cols=204 Identities=22% Similarity=0.254 Sum_probs=146.8
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+..|+|++.++..|...+... ..|+ .+..++||+||||||||++|++||..+... ..+|+.++++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~ 626 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 626 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTT
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechh
Confidence 356899999999998887652 1111 223589999999999999999999998543 35677778765
Q ss_pred hhhh-----hH-------hHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----
Q 003859 454 VLSK-----WV-------GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----- 516 (791)
Q Consensus 454 ~~~~-----~~-------g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~----- 516 (791)
+... .+ |... ...+...+....++||||||++.+ ...+++.|+..|+...
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp CCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSS
T ss_pred ccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCC
Confidence 5432 12 2211 122334444555789999999876 4678888999998432
Q ss_pred ----CCCcEEEeccCCch--------------------------hhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHh
Q 003859 517 ----SRGQVVLIGATNRV--------------------------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (791)
Q Consensus 517 ----~~~~vivIattn~~--------------------------~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~ 566 (791)
...+++||+|||.. ..+.++|.. ||+.++.|.+|+.+++..|++.++.
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 12367899999962 123566776 9988999999999999999998776
Q ss_pred c---------CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh
Q 003859 567 K---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFRE 606 (791)
Q Consensus 567 ~---------~~~~~~~~~~~~LA~~t~--G~s~~di~~l~~~A~~~a~~~ 606 (791)
. ....++.+.+..|+.... .+..++|.++|..+...++.+
T Consensus 772 ~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 772 YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 3 234578888889998776 688999999999988777654
No 82
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.48 E-value=2.1e-13 Score=143.34 Aligned_cols=199 Identities=19% Similarity=0.147 Sum_probs=121.7
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
.+|++++|.+..+..+.+.+.... ..+.+|||+||||||||++|++|+..+... ..+|+.+++..+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC
Confidence 478999999999998887765521 234689999999999999999999877533 3567788877653
Q ss_pred hhhH-----hHHHHH-------HHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-------
Q 003859 456 SKWV-----GEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (791)
Q Consensus 456 ~~~~-----g~~~~~-------l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~------- 516 (791)
.... |..... ...+|.. ....+|||||++.+. ..++..|+.+|+...
T Consensus 70 ~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 70 ENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC-
T ss_pred hhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCc
Confidence 3211 110000 0112222 235699999999884 345667777776421
Q ss_pred --CCCcEEEeccCCch-h------hhhhhhcCCCCcc-ccccCCCCCH--HHHHHHHHHHHhc----CCC----CCCHHH
Q 003859 517 --SRGQVVLIGATNRV-D------AIDGALRRPGRFD-REFNFPLPGC--EARAEILDIHTRK----WKQ----PPSREL 576 (791)
Q Consensus 517 --~~~~vivIattn~~-~------~Ld~aL~r~gRf~-~~I~~~~Pd~--eer~~IL~~~l~~----~~~----~~~~~~ 576 (791)
....+.||+|||.. . .+.+.|.. ||. ..|.+|+... ++...|+++++.. ... .++.+.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12356788888873 2 24577777 875 3455555543 4555555554432 332 567777
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 577 KSELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 577 ~~~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
+..|....-..+.++|.+++..++..+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 777776554456788999988877544
No 83
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.46 E-value=9.1e-14 Score=158.54 Aligned_cols=200 Identities=20% Similarity=0.149 Sum_probs=126.4
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-----hh
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-----DV 454 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-----~~ 454 (791)
.|+|.+.++..+..++.. ..+|||+||||||||+||++||..+... ..|..+.+. ++
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~---~~f~~~~~~~~t~~dL 84 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNA---RAFEYLMTRFSTPEEV 84 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSC---CEEEEECCTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhh---hHHHHHHHhcCCHHHh
Confidence 478999999888766533 2589999999999999999999877421 233333332 22
Q ss_pred hhhhHhHHHHHHHHHHHHHHhc---CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC--------CCCcEEE
Q 003859 455 LSKWVGEAERQLKLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------SRGQVVL 523 (791)
Q Consensus 455 ~~~~~g~~~~~l~~lf~~a~~~---~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~--------~~~~viv 523 (791)
++.+.+..... ...|..+... .++|||||||+.+ ...+++.|+..|+... .....++
T Consensus 85 ~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 85 FGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp HCCBC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred cCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 22111111100 1122211111 3679999999765 4567788888886321 1112245
Q ss_pred eccCCch-h--hhhhhhcCCCCccccccCCCCCH-HHHHHHHHHHHhcC-----------------------CCCCCHHH
Q 003859 524 IGATNRV-D--AIDGALRRPGRFDREFNFPLPGC-EARAEILDIHTRKW-----------------------KQPPSREL 576 (791)
Q Consensus 524 Iattn~~-~--~Ld~aL~r~gRf~~~I~~~~Pd~-eer~~IL~~~l~~~-----------------------~~~~~~~~ 576 (791)
|+|||.+ + .+.+++.+ ||...|.+++|+. +++..|+....... ...++..+
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 6666752 2 13458888 9988899999987 77888887654211 33455666
Q ss_pred HHHHHHHc---------cCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 003859 577 KSELAASC---------VGYCGADLKALCTEAAIRAFREKYPQV 611 (791)
Q Consensus 577 ~~~LA~~t---------~G~s~~di~~l~~~A~~~a~~~~~~~~ 611 (791)
++.++... .|.|++.+..++..|...|.......+
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~V 274 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAV 274 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccc
Confidence 66666544 488999999999999888887765433
No 84
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.43 E-value=3.9e-12 Score=167.74 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=89.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHH---------------hc
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ---------------RN 476 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~---------------~~ 476 (791)
...+|||+||||||||++|+.++..+ ....++.++.+...+. ..+...+.... .+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCC
Confidence 34689999999999999996665433 1345555555433221 12333333220 12
Q ss_pred CCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc--cCCC--------CcEEEeccCCchh-----hhhhhhcCCC
Q 003859 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--LDSR--------GQVVLIGATNRVD-----AIDGALRRPG 541 (791)
Q Consensus 477 ~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~--~~~~--------~~vivIattn~~~-----~Ld~aL~r~g 541 (791)
.++||||||++..... ..+.+....++. .+|+. +... .++.+|||+|.+. .|+++|+|
T Consensus 1336 k~~VlFiDEinmp~~d--~yg~q~~lelLR---q~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLD--KYGSQNVVLFLR---QLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCC--SSSCCHHHHHHH---HHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred ceEEEEeccccccccc--ccCchhHHHHHH---HHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 3579999999864322 222222233333 34442 1111 2589999999995 79999999
Q ss_pred CccccccCCCCCHHHHHHHHHHHHhcC
Q 003859 542 RFDREFNFPLPGCEARAEILDIHTRKW 568 (791)
Q Consensus 542 Rf~~~I~~~~Pd~eer~~IL~~~l~~~ 568 (791)
|| .+|.|+.|+.+++..|+..++..+
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99 689999999999999999888653
No 85
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=4.2e-13 Score=144.19 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=124.7
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~ 459 (791)
+|+|....+..+.+.+... ...+.+|||+||||||||++|++|+...... ..+|+.++|..+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNESLL 69 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCChHHH
Confidence 5889999999888877652 1345689999999999999999999876433 35667777765433211
Q ss_pred -----hHH-------HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC---------CC
Q 003859 460 -----GEA-------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SR 518 (791)
Q Consensus 460 -----g~~-------~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~---------~~ 518 (791)
|.. .......|..+. .++||||||+.+. ..++..|+..|+... ..
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCccccc
Confidence 100 001122344443 4599999999884 345667788777532 12
Q ss_pred CcEEEeccCCch--hh-----hhhhhcCCCCcc-ccccCCCCC--HHHHHHHHHHHHhc----C---CCCCCHHHHHHHH
Q 003859 519 GQVVLIGATNRV--DA-----IDGALRRPGRFD-REFNFPLPG--CEARAEILDIHTRK----W---KQPPSRELKSELA 581 (791)
Q Consensus 519 ~~vivIattn~~--~~-----Ld~aL~r~gRf~-~~I~~~~Pd--~eer~~IL~~~l~~----~---~~~~~~~~~~~LA 581 (791)
..+.||+|||.. .. +.+.|.. ||. ..|.+|+.. .++...|+.+++.. + ...++.+.+..|.
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI 213 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH
Confidence 357888888874 11 3445555 663 235566555 45556666665543 2 2456778777777
Q ss_pred HHccCCCHHHHHHHHHHHHHHH
Q 003859 582 ASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 582 ~~t~G~s~~di~~l~~~A~~~a 603 (791)
...-.-+.++|.+++..|+..+
T Consensus 214 ~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 214 HYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HCCCSSHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 7663446788888888877543
No 86
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.36 E-value=4.2e-13 Score=144.02 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=87.6
Q ss_pred ccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHH
Q 003859 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILG 723 (791)
Q Consensus 644 ~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~ 723 (791)
++.+....+.+.|.+|+|+...++.+.+++.. |+.+++.|.++++. .+.++|||||||||||++|+++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~~---------~~~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMT---------PSKGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCC---------CCSEEEEECSSSSSHHHHHHHH
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCC---------CCceEEEECCCCcCHHHHHHHH
Confidence 34555667899999999998888888888776 66778888887653 3448999999999999888877
Q ss_pred HHHHc----CchhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 724 LQFYM----NWRNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 724 ~~~~~----~~~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+..+- .+....+...+. ..+..+|..+...+||||||||||.++..++.
T Consensus 70 a~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~ 126 (301)
T 3cf0_A 70 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 126 (301)
T ss_dssp HHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTT
T ss_pred HHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCC
Confidence 76542 123333333222 34566788888888999999999999987654
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=1.9e-11 Score=136.00 Aligned_cols=233 Identities=16% Similarity=0.093 Sum_probs=149.1
Q ss_pred CCCCCccCCcHHHHHHHHHHH-HcccCChhHhhhcCC-CCCceEEE--EcCCCChHHHHHHHHHHHHhhc----CCceEE
Q 003859 375 SVSFDDIGGLSEYIDALKEMV-FFPLLYPDFFASYHI-TPPRGVLL--CGPPGTGKTLIARALACAASKA----GQKVSF 446 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v-~~pl~~~~~~~~~g~-~~~~~vLL--~GppGtGKT~laralA~~l~~~----~~~~~~ 446 (791)
....+.++|.+..++.|...+ ...+. +. ..+..++| +||+|+|||+|++++++.+... +..+.+
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~ 89 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 89 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeE
Confidence 344578999999999998887 43211 10 23567999 9999999999999999987542 123556
Q ss_pred EEEechh------hhhhhHh----------H-HHHHHHHHHHHHH-hcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHH
Q 003859 447 YMRKGAD------VLSKWVG----------E-AERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (791)
Q Consensus 447 ~~i~~~~------~~~~~~g----------~-~~~~l~~lf~~a~-~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~L 508 (791)
+.+++.. ++..... . ....+..+..... ...|.||||||++.+..... ....++..|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l 164 (412)
T 1w5s_A 90 AYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTL 164 (412)
T ss_dssp EEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHH
Confidence 6666532 1211110 0 1112222222222 34588999999998853210 023455566
Q ss_pred HHHHhccCC-C--CcEEEeccCCchh---hhh---hhhcCCCCccccccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHH
Q 003859 509 LALMDGLDS-R--GQVVLIGATNRVD---AID---GALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WKQPPSRELK 577 (791)
Q Consensus 509 l~~l~~~~~-~--~~vivIattn~~~---~Ld---~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~--~~~~~~~~~~ 577 (791)
+.++..... . .++.||++|+.+. .++ +.+.+ +|...+.|++++.++..+||...+.. .....+...+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 666654431 2 6788888887655 344 66666 66555999999999999999877653 2234567777
Q ss_pred HHHHHHcc------CCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhccc
Q 003859 578 SELAASCV------GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (791)
Q Consensus 578 ~~LA~~t~------G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 639 (791)
..++..+. | .+..+..++..|...+..... ..++.+++..++...
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~----------------~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGR----------------DSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTC----------------SSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHHHHHH
Confidence 88888888 6 577888888888776655432 236677777776554
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.32 E-value=8.9e-12 Score=135.63 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=123.0
Q ss_pred CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC-------------------c
Q 003859 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------K 443 (791)
Q Consensus 383 G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~ 443 (791)
-++++++.|...+.. -..+..+||+||+|+|||++|+++|+.+..... +
T Consensus 6 w~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 346667777776644 145567999999999999999999999864321 1
Q ss_pred eEEEEEechhhhhhhHhHHHHHHHHHHHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCC
Q 003859 444 VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRG 519 (791)
Q Consensus 444 ~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~ 519 (791)
..++.+..... +. ......++.++..+.. ....||||||+|.|. ....+.|+..|+. ...
T Consensus 74 ~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe--p~~ 137 (334)
T 1a5t_A 74 PDYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE--PPA 137 (334)
T ss_dssp TTEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS--CCT
T ss_pred CCEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC--CCC
Confidence 22333433200 00 0112335556655542 236799999999884 3456778888884 456
Q ss_pred cEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 003859 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (791)
Q Consensus 520 ~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~ 598 (791)
.+++|++||.++.+.+.+++ |+. .+.|++|+.++...+|...+ ..+.+.+..++..+.| +++.+.+++..
T Consensus 138 ~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 78888888889999999999 885 69999999999999998775 3466666778877766 44555554443
No 89
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=9.6e-14 Score=162.28 Aligned_cols=225 Identities=19% Similarity=0.135 Sum_probs=134.5
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~ 458 (791)
..|+|++.++..|...+... .+.......+....+|||+||||||||+||++||..+....+.... ..++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~-~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK-GSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-CSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-cccccccccee
Confidence 46899999887774433211 0000000112334489999999999999999999887432111000 01111111100
Q ss_pred -----HhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----------CCCcEE
Q 003859 459 -----VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVV 522 (791)
Q Consensus 459 -----~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----------~~~~vi 522 (791)
.+... .....+..| ...||||||||.+. ...+..|+..|+.-. ....+.
T Consensus 372 ~~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 372 VREKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SSGGGTSSCS-EEECHHHHH---SSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eecccccccc-ccCCeeEec---CCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 00000 000112222 24599999999884 345677888887422 124678
Q ss_pred EeccCCchh-------------hhhhhhcCCCCccc-cccCCCCCHHHHHHHHHHHHhcCCC------------------
Q 003859 523 LIGATNRVD-------------AIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRKWKQ------------------ 570 (791)
Q Consensus 523 vIattn~~~-------------~Ld~aL~r~gRf~~-~I~~~~Pd~eer~~IL~~~l~~~~~------------------ 570 (791)
||+|||.+. .|+++|++ ||+. .+.++.|+.+ ...|+++.+.....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999886 89999999 9974 4566777777 88888877754221
Q ss_pred -------CCCHHHHHHHHHH--------------ccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeH
Q 003859 571 -------PPSRELKSELAAS--------------CVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEK 629 (791)
Q Consensus 571 -------~~~~~~~~~LA~~--------------t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~ 629 (791)
.++.+..+.|+.. ..+.|++.+.++++.|...|..+.. ..|+.
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~----------------~~V~~ 577 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK----------------AEVTR 577 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS----------------CCSSH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc----------------CCCCH
Confidence 2222223334443 3477888888888888877765432 24888
Q ss_pred HHHHHHhcccc
Q 003859 630 YHFIEAMSTIT 640 (791)
Q Consensus 630 ~df~~Al~~~~ 640 (791)
+|+..|+.-+.
T Consensus 578 ~dv~~Ai~l~~ 588 (595)
T 3f9v_A 578 EDAERAINIMR 588 (595)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89988876544
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.28 E-value=1.4e-11 Score=144.81 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=128.9
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
++..|++++|++.+++.|...+.. ..++||+||||||||+||++||..+........++..+...
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred cccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 567889999999999888777643 24799999999999999999999874332111111111000
Q ss_pred ------------hhhhhHhHH------------------------------------------HHHHHHHHH--------
Q 003859 454 ------------VLSKWVGEA------------------------------------------ERQLKLLFE-------- 471 (791)
Q Consensus 454 ------------~~~~~~g~~------------------------------------------~~~l~~lf~-------- 471 (791)
......... ......+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 000000000 000011111
Q ss_pred ---------------HHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-------------------C
Q 003859 472 ---------------EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------------------S 517 (791)
Q Consensus 472 ---------------~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-------------------~ 517 (791)
.+....+.+|||||++.|. ..++..|+..|+.-. .
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 0111235699999999872 456667777776311 1
Q ss_pred CCcEEEeccCCch--hhhhhhhcCCCCcc---ccccCCCC---CHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHc
Q 003859 518 RGQVVLIGATNRV--DAIDGALRRPGRFD---REFNFPLP---GCEARAEILDIHTRK-----WKQPPSRELKSELAASC 584 (791)
Q Consensus 518 ~~~vivIattn~~--~~Ld~aL~r~gRf~---~~I~~~~P---d~eer~~IL~~~l~~-----~~~~~~~~~~~~LA~~t 584 (791)
...+.||++||.. ..++++|++ ||. ..+.|+.. +.+....+++.+... ....++.+.+..|+...
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 1357899999986 679999999 985 34555432 345566666544432 23466778777787654
Q ss_pred ---cCC------CHHHHHHHHHHHHHHHHHhhC
Q 003859 585 ---VGY------CGADLKALCTEAAIRAFREKY 608 (791)
Q Consensus 585 ---~G~------s~~di~~l~~~A~~~a~~~~~ 608 (791)
.|- +.++|.++++.|...|..+..
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~ 360 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK 360 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCc
Confidence 553 789999999999887766543
No 91
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.27 E-value=8e-13 Score=143.19 Aligned_cols=112 Identities=12% Similarity=0.012 Sum_probs=77.1
Q ss_pred cccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 649 l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
...+.++|.+|+|+...++.+.+.+.. |+.+++.|.. ...++.|+|||||||||||++|++++..+.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~~----------~~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTG----------KRTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHH---HHHCGGGSCT----------TCCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHH---HHhCHHHHhC----------CCCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 456889999999998887777776654 4444443321 223345999999999999988888887652
Q ss_pred Cch-----hHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccccc
Q 003859 729 NWR-----NFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSIY 773 (791)
Q Consensus 729 ~~~-----~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~~ 773 (791)
+.. ...+.. .....+..+|..+...+||||||||||.++..++..
T Consensus 71 ~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~ 124 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 124 (322)
T ss_dssp SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC
T ss_pred CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc
Confidence 221 111110 112456667777888889999999999998876543
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=1.3e-10 Score=153.33 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=100.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~ 493 (791)
.++++.||+|||||.+|++||+.++ ..++.++|.+.+.. ..+..+|..+... .++++||||+.+-+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg-----~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~~-- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLG-----RVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLDE-- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTT-----CCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH--
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhC-----CcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcCh--
Confidence 5789999999999999999999996 55666777654432 2234555555443 36999999997742
Q ss_pred CCchhhhhHHH---HHHHHHHHhc-----------cCCCCcEEEeccCCc----hhhhhhhhcCCCCccccccCCCCCHH
Q 003859 494 SSKQEQIHNSI---VSTLLALMDG-----------LDSRGQVVLIGATNR----VDAIDGALRRPGRFDREFNFPLPGCE 555 (791)
Q Consensus 494 ~~~~~~~~~~v---~~~Ll~~l~~-----------~~~~~~vivIattn~----~~~Ld~aL~r~gRf~~~I~~~~Pd~e 555 (791)
.....+ +..++..+.. +.-...+.|++|.|. ...|+.+|.+ || +.|.+..|+.+
T Consensus 712 -----evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 712 -----KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 112222 2222333321 111235667778773 3468999998 88 47999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHH-------HHHcc-----CCCHHHHHHHHHHHHH
Q 003859 556 ARAEILDIHTRKWKQPPSRELKSEL-------AASCV-----GYCGADLKALCTEAAI 601 (791)
Q Consensus 556 er~~IL~~~l~~~~~~~~~~~~~~L-------A~~t~-----G~s~~di~~l~~~A~~ 601 (791)
...+|+-... ++ .....+...+ ..... .|..+.|..++..|..
T Consensus 784 ~i~ei~l~s~-Gf--~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 784 TIAEMILQIM-GF--EDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp HHHHHHHHHH-HC--SSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CC--CchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 8888764332 21 1112221111 22222 3677888888876654
No 93
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.22 E-value=4e-12 Score=137.64 Aligned_cols=113 Identities=10% Similarity=0.002 Sum_probs=77.5
Q ss_pred CcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHH
Q 003859 646 GATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQ 725 (791)
Q Consensus 646 ~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~ 725 (791)
.+....+++.|.+|+|+...++.+.+++.. |+.++..|.. +..++.++|||||||||||++|++++.
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~---~~~~~~~~~~----------~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKG----------NRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHH---HHHCGGGCCT----------TCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHH---HHhCHHHHhc----------CCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 444566899999999998888888777544 3333332221 233355999999999999988887776
Q ss_pred HHcC----chhHHHHHH----HHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 726 FYMN----WRNFLFILL----VFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 726 ~~~~----~~~~~l~~d----~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
..-. +....+... .-..+..+|..+...+||||||||||.++..+.
T Consensus 74 ~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~ 127 (322)
T 3eie_A 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127 (322)
T ss_dssp HHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--
T ss_pred HHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCC
Confidence 5321 222222221 225567788888888999999999999988653
No 94
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.21 E-value=4.7e-12 Score=120.41 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=78.7
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~ 459 (791)
+++|.+..+..+.+.+... .....+|||+||||||||++|++|+.... .|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~~~- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLIDM- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHHHC-
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCChHh-
Confidence 4789999999988887652 13446799999999999999999998652 78888888765443
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 460 g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
+..+|..+. ..+|||||+|.+. ...+..|+..|+... ...+.+|+|||.+
T Consensus 67 ------~~~~~~~a~---~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 ------PMELLQKAE---GGVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp ------HHHHHHHTT---TSEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred ------hhhHHHhCC---CCeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344555443 4699999999884 334556677666432 3457788888764
No 95
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=5.8e-11 Score=127.42 Aligned_cols=147 Identities=9% Similarity=0.099 Sum_probs=105.4
Q ss_pred CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcC-CceEEEEEechhhhhhhHhH
Q 003859 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-QKVSFYMRKGADVLSKWVGE 461 (791)
Q Consensus 383 G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-~~~~~~~i~~~~~~~~~~g~ 461 (791)
|++++++.|...+.. + . ..++|||||||+|||++|+++|+.+.... .+..++.+++... ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 567788888887755 1 2 45899999999999999999998764221 1234555554320 01
Q ss_pred HHHHHHHHHHHHHhcC----CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhh
Q 003859 462 AERQLKLLFEEAQRNQ----PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGAL 537 (791)
Q Consensus 462 ~~~~l~~lf~~a~~~~----p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL 537 (791)
....++.++..+...+ ..|+||||+|.|. ....+.|+..|+. +...+++|.+|+.+..|.+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHH
Confidence 1234566666665322 4699999999883 3456789999984 456777777888889999999
Q ss_pred cCCCCccccccCCCCCHHHHHHHHHHHH
Q 003859 538 RRPGRFDREFNFPLPGCEARAEILDIHT 565 (791)
Q Consensus 538 ~r~gRf~~~I~~~~Pd~eer~~IL~~~l 565 (791)
++ | .+.|++|+.++...+|...+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99 7 79999999999999998877
No 96
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=130.82 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=70.8
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc-
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM- 728 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~- 728 (791)
..+.++|.+|+|+....+.+.+.+.. |+.++..|..+++. .+.|+||+||||||||+++++++..+-
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~---~~~~~~~l~~~~l~---------~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILA---PVRNPDQFKALGLV---------TPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTH---HHHSHHHHHHTTCC---------CCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCC---------CCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 35789999999998888777766544 66777888887654 356899999999999998888877531
Q ss_pred ---CchhHHH----HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 729 ---NWRNFLF----ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 729 ---~~~~~~l----~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.+.+..+ .......+..+|..+....||++|+||++.++..+.
T Consensus 71 ~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~ 120 (274)
T 2x8a_A 71 NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS 120 (274)
T ss_dssp EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---
T ss_pred CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccC
Confidence 1111111 112234566677777777899999999999886553
No 97
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.18 E-value=5.2e-11 Score=152.35 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=59.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhhhHh------------HHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG------------EAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~~~g------------~~~~~l~~lf~~a~ 474 (791)
++....++||+||||||||+||.+++.+....+..+.|+.+... .+.....| ..+...+.+...++
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46788899999999999999999999999888888888765532 22211111 11222333333445
Q ss_pred hcCCeEEEEeCCCccCCC
Q 003859 475 RNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~~ 492 (791)
...|++|+||++..|.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 667999999999998653
No 98
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.17 E-value=2.3e-11 Score=115.88 Aligned_cols=115 Identities=23% Similarity=0.217 Sum_probs=77.8
Q ss_pred ccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhH
Q 003859 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (791)
Q Consensus 380 ~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~ 459 (791)
+|+|....+..+.+.+... .....+|||+||||||||++|++|+....... .+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~-- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNA-- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTS--
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcc--
Confidence 5789999888888877542 13456799999999999999999998764332 4555 666655433
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 460 g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
.....+|..+ ..++|||||+|.+. ..++..|+.+|... ...+.||+|||.+
T Consensus 66 ----~~~~~~~~~a---~~g~l~ldei~~l~-----------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----PQLNDFIALA---QGGTLVLSHPEHLT-----------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp ----SCHHHHHHHH---TTSCEEEECGGGSC-----------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred ----hhhhcHHHHc---CCcEEEEcChHHCC-----------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2233445554 34599999999884 34556677777532 3456677777763
No 99
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.15 E-value=1e-11 Score=136.23 Aligned_cols=113 Identities=10% Similarity=0.002 Sum_probs=71.4
Q ss_pred CcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHH
Q 003859 646 GATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQ 725 (791)
Q Consensus 646 ~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~ 725 (791)
.+....+.+.|.+|+|+...++.+.+++.. |+.++..|.. ...++.++|||||||||||++|++++.
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~----------~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKG----------NRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHH---HHHCGGGGCS----------SCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHH---HHhCHHHHhc----------CCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 334455789999999998777777766544 3334433322 223345899999999999988887777
Q ss_pred HHcC----chhHHHHHH----HHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 726 FYMN----WRNFLFILL----VFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 726 ~~~~----~~~~~l~~d----~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.+-. +....+... ....+..+|..+...+||||||||+|.++..+.
T Consensus 107 ~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 160 (355)
T 2qp9_X 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 160 (355)
T ss_dssp HHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---
T ss_pred HhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCC
Confidence 6422 222222211 125566777788888899999999999987654
No 100
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.12 E-value=2.1e-11 Score=137.78 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=74.8
Q ss_pred CcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHH
Q 003859 646 GATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQ 725 (791)
Q Consensus 646 ~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~ 725 (791)
.+....+.+.|.+|+|+...++.+.+++.. |+.++..|.. ...++.++|||||||||||++|++++.
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~~----------~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTG----------KRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTH---HHHCTTTTSG----------GGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHhhc----------cCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344456889999999998887777776543 3333333321 112245999999999999988888777
Q ss_pred HHcCc-----hhHHHHHHHH----HHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 726 FYMNW-----RNFLFILLVF----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 726 ~~~~~-----~~~~l~~d~~----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
.+.+. ....+...+. ..+..+|..+...+||||||||||.++..+..
T Consensus 190 ~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~ 245 (444)
T 2zan_A 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 245 (444)
T ss_dssp HCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSC
T ss_pred HcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCC
Confidence 65232 2222222221 34556777788888999999999999876554
No 101
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.08 E-value=3.8e-11 Score=127.12 Aligned_cols=110 Identities=14% Similarity=0.036 Sum_probs=80.4
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC-
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN- 729 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~- 729 (791)
.+.+.|.+++|+...++.+..++.. ++.++..|.++++. .+.++||+||||||||++|++++..+-.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~---------~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIE---------PPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCC---------CCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCC---------CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4678999999999999888888766 55667777777543 3558999999999999888888765421
Q ss_pred ---chhHHH----HHHHHHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 730 ---WRNFLF----ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 730 ---~~~~~l----~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+....+ .......+..+|..+....|+||||||++.++..++.
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 128 (285)
T 3h4m_A 79 FIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD 128 (285)
T ss_dssp EEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS
T ss_pred EEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc
Confidence 111111 1122355666777788888999999999999866543
No 102
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.06 E-value=8e-11 Score=134.27 Aligned_cols=109 Identities=10% Similarity=0.000 Sum_probs=82.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH----
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY---- 727 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~---- 727 (791)
..+.|.+|+|+...++.+.+++.. ++.++..|..++.. .+.++|||||||||||++|++++..+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~---------~~~~vLL~GppGtGKT~lAraia~~~~~~f 266 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVK---------PPRGILLYGPPGTGKTLIARAVANETGAFF 266 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCC---------CCCEEEEECSTTSSHHHHHHHHHHHCSSEE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCC---------CCCcEEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 457899999999999999888776 56778888887653 34589999999999998887776653
Q ss_pred cCchhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 728 MNWRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 728 ~~~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+.+....+.. .....+..+|..|...+||||||||||.++..++.
T Consensus 267 v~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~ 315 (489)
T 3hu3_A 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315 (489)
T ss_dssp EEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS
T ss_pred EEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc
Confidence 1122222221 12355677888999999999999999999987653
No 103
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.02 E-value=9.8e-11 Score=132.62 Aligned_cols=107 Identities=7% Similarity=0.039 Sum_probs=74.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC--
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN-- 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~-- 729 (791)
+.++|.+|+|+...++++.+.+..+ ..+..|.++++ +.+.|+||+||||||||++|++++...-.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l----~~~~~~~~~g~---------~~p~gvLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFL----KDPSKFNRIGA---------RMPKGILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHH----HCTHHHHTTTC---------CCCSEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHh----hChHHHhhcCC---------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 5688999999988877777765542 33455666544 34569999999999999888888775311
Q ss_pred --chhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 730 --WRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 730 --~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+....+.. .-...++.+|..|...+||||||||||.++..++
T Consensus 78 ~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 78 FHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp EEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--
T ss_pred eeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc
Confidence 11111110 1124566778888888999999999999988765
No 104
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.00 E-value=1.9e-08 Score=108.73 Aligned_cols=192 Identities=17% Similarity=0.095 Sum_probs=117.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
+......++|.+..++.|...+.. + ..++|+||+|+|||+|++.+++.++ + +.+++..
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~--~~~~~~~ 64 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP-----G--ILIDCRE 64 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS-----E--EEEEHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC-----c--EEEEeec
Confidence 445556799999999999887643 1 5799999999999999999998752 3 3333322
Q ss_pred h------------hhhhHh----------------------------HHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCC
Q 003859 454 V------------LSKWVG----------------------------EAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493 (791)
Q Consensus 454 ~------------~~~~~g----------------------------~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~ 493 (791)
. +..... .....+..+...+....|.||||||++.+....
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~ 144 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG 144 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC
Confidence 1 110000 011112222222222248999999999875310
Q ss_pred CCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhh---------hhcCCCCccccccCCCCCHHHHHHHHHHH
Q 003859 494 SSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDG---------ALRRPGRFDREFNFPLPGCEARAEILDIH 564 (791)
Q Consensus 494 ~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~---------aL~r~gRf~~~I~~~~Pd~eer~~IL~~~ 564 (791)
. .....++..|...++.. .++.+|.|+.....+.. .+. +|+...+.+++.+.++..+++...
T Consensus 145 ~----~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 145 S----RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp T----TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHH
T ss_pred c----cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHH
Confidence 0 01223344444444432 35555555543222221 122 256567999999999999999988
Q ss_pred HhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHH
Q 003859 565 TRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (791)
Q Consensus 565 l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~ 597 (791)
+.......+...+..+...|.|+ |.-+..++.
T Consensus 216 ~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 216 FREVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp HHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 77666666777778888888886 455666554
No 105
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.99 E-value=1e-10 Score=121.89 Aligned_cols=107 Identities=11% Similarity=0.018 Sum_probs=61.7
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC--
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN-- 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~-- 729 (791)
+.+.|.+++|+...++.+..++..+ .++..|..+| +..+.++||+||||||||++|++++..+-.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~----~~~~~~~~~g---------~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYL----KSPERFLQLG---------AKVPKGALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHH----HCCC---------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHH----HCHHHHHHcC---------CCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4578999999977776666655432 2233444443 334568999999999999888888775421
Q ss_pred --chhHHH----HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 730 --WRNFLF----ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 730 --~~~~~l----~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+....+ .......+..+|..+....||||||||++.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~ 115 (262)
T 2qz4_A 68 LAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRS 115 (262)
T ss_dssp EEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC--------
T ss_pred EEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccc
Confidence 111111 011124455667777777899999999999976553
No 106
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.97 E-value=1.9e-10 Score=127.77 Aligned_cols=120 Identities=10% Similarity=-0.052 Sum_probs=75.0
Q ss_pred cccccccCcccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhH
Q 003859 639 ITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFN 718 (791)
Q Consensus 639 ~~p~~~r~~~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~ 718 (791)
+.....+......+.+.|.+|.|+...++.+..++.. +..++..|.+++ ....++|||||||||||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~---~~~~~~~~~~~~----------~~~~~vLL~GppGtGKT~ 163 (389)
T 3vfd_A 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLR----------APARGLLLFGPPGNGKTM 163 (389)
T ss_dssp CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGG----------CCCSEEEEESSTTSCHHH
T ss_pred HHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHH---hccCHHHhcccC----------CCCceEEEECCCCCCHHH
Confidence 3334444555556789999999998888888877644 222222222221 123489999999999998
Q ss_pred HHHHHHHHHcC----chhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 719 RIILGLQFYMN----WRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 719 la~~~~~~~~~----~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+|.+++..+-. +....+.. .....+..+|..+....|+||||||||.++..+.
T Consensus 164 la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~ 224 (389)
T 3vfd_A 164 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224 (389)
T ss_dssp HHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----
T ss_pred HHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCC
Confidence 88777665311 11111111 1224556677778888999999999999976554
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.97 E-value=2.2e-08 Score=133.12 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=97.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~ 493 (791)
.+..+.||+|||||.+++.||+.++ ..++.++|.+.+.. ..+..+|..+... .+..+||||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg-----r~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~-- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG-----RFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEE-- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC-----CeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCH--
Confidence 4678999999999999999999996 45566677654332 1233444444433 35889999998731
Q ss_pred CCchhhhhHHHHHHHH---HHHhc------------cCCCCcEEEeccCCc----hhhhhhhhcCCCCccccccCCCCCH
Q 003859 494 SSKQEQIHNSIVSTLL---ALMDG------------LDSRGQVVLIGATNR----VDAIDGALRRPGRFDREFNFPLPGC 554 (791)
Q Consensus 494 ~~~~~~~~~~v~~~Ll---~~l~~------------~~~~~~vivIattn~----~~~Ld~aL~r~gRf~~~I~~~~Pd~ 554 (791)
.....+..++. ..+.. +.-...+.||+|.|. ...||.+|.. +|. .|.+..||.
T Consensus 671 -----~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~Pd~ 742 (3245)
T 3vkg_A 671 -----RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIKPDR 742 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCSCCH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeCCCH
Confidence 11122212121 11111 112335677888884 3469999998 885 599999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHH------HHH------ccCCCHHHHHHHHHHHHH
Q 003859 555 EARAEILDIHTRKWKQPPSRELKSEL------AAS------CVGYCGADLKALCTEAAI 601 (791)
Q Consensus 555 eer~~IL~~~l~~~~~~~~~~~~~~L------A~~------t~G~s~~di~~l~~~A~~ 601 (791)
+...+|+-. ..+......+...+ +.. -..|--+.|+.++..|..
T Consensus 743 ~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~ 798 (3245)
T 3vkg_A 743 EMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGG 798 (3245)
T ss_dssp HHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Confidence 887777533 22222222221111 111 123567888888776543
No 108
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.96 E-value=9e-11 Score=125.05 Aligned_cols=110 Identities=12% Similarity=-0.049 Sum_probs=72.2
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 650 ~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
..+.+.|.+++|....++.+..++.. |..+++.|..++ ..+.++||+||||||||++|++++..+..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~----------~~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVIL---PSVRPELFTGLR----------APAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHH---HHHCGGGSCGGG----------CCCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHh---hhhCHHHHhcCC----------CCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 44788999999998888888777654 333333333221 12348999999999999888887765421
Q ss_pred ----chhHHHH----HHHHHHHHHHhhhhhcCCceEEEEeCchhhcccccc
Q 003859 730 ----WRNFLFI----LLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYSI 772 (791)
Q Consensus 730 ----~~~~~l~----~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~~ 772 (791)
+....+. .........+|..+....|+||||||++.+...++.
T Consensus 81 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 131 (297)
T 3b9p_A 81 TFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131 (297)
T ss_dssp EEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--
T ss_pred CeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc
Confidence 1111110 011244556667777788999999999999876643
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=1.9e-09 Score=106.06 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCCCCCccCC----cHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh-hcCCceEEEE
Q 003859 374 ESVSFDDIGG----LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYM 448 (791)
Q Consensus 374 ~~~~~~~l~G----~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~ 448 (791)
...+|+++++ +..+++.+..++.. +.+..+.+++|+||+|||||+|+++|+..+. ..+..+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-- 72 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-- 72 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE--
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE--
Confidence 3567888775 34444455444433 2334467899999999999999999999986 44544444
Q ss_pred EechhhhhhhHhHHHHH-HHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 449 RKGADVLSKWVGEAERQ-LKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 449 i~~~~~~~~~~g~~~~~-l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
++...+...+....... ...++.. ...|.||||||++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 44455444332211110 0112222 235779999999854
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.93 E-value=1.7e-08 Score=134.11 Aligned_cols=138 Identities=17% Similarity=0.296 Sum_probs=85.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHH----H------------h
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----Q------------R 475 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a----~------------~ 475 (791)
...+|||+||||||||+++..+...+ ....++.++.+..... ..+...+... . .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l----~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF----PDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC----TTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC----CCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcC
Confidence 34679999999999998876554333 1345566665443221 2222222210 0 1
Q ss_pred cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc--c-CC-------CCcEEEeccCCchh-----hhhhhhcCC
Q 003859 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--L-DS-------RGQVVLIGATNRVD-----AIDGALRRP 540 (791)
Q Consensus 476 ~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~--~-~~-------~~~vivIattn~~~-----~Ld~aL~r~ 540 (791)
+...||||||++.-.. ...+ .+..+..|..+|+. + .. -..+.+|||.|.+. .|+++|.|
T Consensus 1373 Gk~~VlFiDDiNmp~~--D~yG---tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r- 1446 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPST--DKYG---TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR- 1446 (3245)
T ss_dssp TCEEEEEETTTTCCCC--CTTS---CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred CceEEEEecccCCCCc--cccc---cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh-
Confidence 2236999999984322 1112 12344444444442 1 11 13578899999874 58999999
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHhc
Q 003859 541 GRFDREFNFPLPGCEARAEILDIHTRK 567 (791)
Q Consensus 541 gRf~~~I~~~~Pd~eer~~IL~~~l~~ 567 (791)
||. +|.++.|+.++...|+..++..
T Consensus 1447 -~F~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1447 -HAP-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp -TCC-EEECCCCCHHHHHHHHHHHHHH
T ss_pred -hce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 896 5999999999999998776654
No 111
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.90 E-value=2.5e-10 Score=125.32 Aligned_cols=108 Identities=11% Similarity=-0.038 Sum_probs=70.9
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC-
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN- 729 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~- 729 (791)
.+.+.|.++.|+...++.+.+++.. |+.++..|.+++ ..+.++||+||||||||++|++++..+-.
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~----------~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVW---PMLRPDIFTGLR----------GPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGG----------SCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH---HhhChHhHhhcc----------CCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4678999999998888888777654 233333332221 12448999999999999888887765311
Q ss_pred ---chhHHHH----HHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 730 ---WRNFLFI----LLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 730 ---~~~~~l~----~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+....+. ......+..+|..+...+|+||||||||.++..++
T Consensus 145 ~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 145 FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp EEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--
T ss_pred EEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCC
Confidence 1111110 11234456667777778899999999999987654
No 112
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.87 E-value=3.9e-10 Score=117.60 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=68.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC--
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN-- 729 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~-- 729 (791)
+.+.|.+++|+...++.+...+..+ .++..|..++. ..+.|+||+||||||||++|++++..+-.
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~----~~~~~~~~~~~---------~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYL----REPSRFQKLGG---------KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHH----HCGGGC--------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHH----hCHHHHHHcCC---------CCCCeEEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 5688999999987777766654432 22333333332 33558999999999999888888776421
Q ss_pred --chhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 730 --WRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 730 --~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+....+.. .....+..+|..+....||+|||||+|.++..++
T Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 74 FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 121 (257)
T ss_dssp EEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS
T ss_pred EEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC
Confidence 11111100 0013455667777778899999999999987654
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.83 E-value=1.1e-07 Score=103.01 Aligned_cols=190 Identities=17% Similarity=0.088 Sum_probs=111.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA- 452 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~- 452 (791)
+......++|.+..++.|.. +.. ..++|+||+|+|||+|++.+++.+.. .+.++.+.+.
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~ 67 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFE 67 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGT
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhc
Confidence 34455679999999998877 421 37999999999999999999998742 2333333221
Q ss_pred --------hhhhhhHhHH-----------------------------------HHHHHHHHHHHHhc--CCeEEEEeCCC
Q 003859 453 --------DVLSKWVGEA-----------------------------------ERQLKLLFEEAQRN--QPSIIFFDEID 487 (791)
Q Consensus 453 --------~~~~~~~g~~-----------------------------------~~~l~~lf~~a~~~--~p~VL~IDEiD 487 (791)
.++....... ...+..++...... .|.||||||++
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~ 147 (357)
T 2fna_A 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 147 (357)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGG
T ss_pred cccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHH
Confidence 1111100000 01233344444332 38899999999
Q ss_pred ccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhh---------hhcCCCCccccccCCCCCHHHHH
Q 003859 488 GLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDG---------ALRRPGRFDREFNFPLPGCEARA 558 (791)
Q Consensus 488 ~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~---------aL~r~gRf~~~I~~~~Pd~eer~ 558 (791)
.+.... ...++..|...++.. .++.+|+|++....+.. .+. +|+...|.+++.+.++..
T Consensus 148 ~~~~~~-------~~~~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 148 ELVKLR-------GVNLLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GGGGCT-------TCCCHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHH
T ss_pred HhhccC-------chhHHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHH
Confidence 875310 111222222233321 24555555554322221 122 255567899999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHH
Q 003859 559 EILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (791)
Q Consensus 559 ~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~ 598 (791)
+++...+.......+.. ..+...|.|+ |..+..++..
T Consensus 216 ~~l~~~~~~~~~~~~~~--~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADIDFKDY--EVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTCCCCCH--HHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcH--HHHHHHhCCC-HHHHHHHHHH
Confidence 99998775433333332 6778888886 4556665543
No 114
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.83 E-value=3.4e-10 Score=118.68 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=68.0
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC-
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN- 729 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~- 729 (791)
.+.+.|.++.|....++.+...+.. +.++..|..++.. .+.|+||+||||||||++|++++..+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~----~~~~~~~~~~~~~---------~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF----LKYPERYANLGAK---------IPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH----HHCHHHHHHHSCC---------CCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH----HHChHHHHHCCCC---------CCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4677899999886665555555443 2345667666543 3558999999999999888888775421
Q ss_pred ---chhHHHHHHH----HHHHHHHhhhhhcCCceEEEEeCchhhcccc
Q 003859 730 ---WRNFLFILLV----FQLFFQILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 730 ---~~~~~l~~d~----~e~~~~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
+....+...+ ...+..+|..+....|+||||||+|.++..+
T Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 72 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119 (268)
T ss_dssp CCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--
T ss_pred EEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccc
Confidence 1111110000 0122345666777789999999999998765
No 115
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.83 E-value=1.7e-09 Score=115.46 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=43.3
Q ss_pred CCCCcEEEecCCCCChhHHHHHHHHHHcCc-----hhHHHHH----HHHHHHHHHhhhh----hcCCceEEEEeCchhhc
Q 003859 701 VYRPRLLLCGSEGTGVFNRIILGLQFYMNW-----RNFLFIL----LVFQLFFQILVPR----HQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 701 ~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~-----~~~~l~~----d~~e~~~~~~~~a----~~~~P~ivfldeid~~a 767 (791)
+.+.|+|||||||||||++|++++..+ +. ....+.. .....+.++|..| +..+||||||||||.++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 344599999999999998888877764 22 2222211 1224455566666 57789999999999988
Q ss_pred ccccc
Q 003859 768 HQYSI 772 (791)
Q Consensus 768 ~~~~~ 772 (791)
..+.+
T Consensus 113 ~~~~~ 117 (293)
T 3t15_A 113 GRMGG 117 (293)
T ss_dssp -----
T ss_pred CCCCC
Confidence 85554
No 116
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.83 E-value=9.1e-10 Score=124.88 Aligned_cols=104 Identities=11% Similarity=-0.075 Sum_probs=65.7
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC-c
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN-W 730 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~-~ 730 (791)
+...|.++.|....++.+..++..+ +. +..++.++|||||||||||++|++++..+-. .
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~-----------~~---------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~ 91 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI-----------KS---------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-----------HT---------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH-----------Hh---------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCc
Confidence 5667899999987777666654331 11 1222448999999999999888877776531 1
Q ss_pred -----hhHHHHH---HHHHHHHHHhhhh---hcCCceEEEEeCchhhccccccccc
Q 003859 731 -----RNFLFIL---LVFQLFFQILVPR---HQRRHWCIYLVKLEEQRHQYSIYHS 775 (791)
Q Consensus 731 -----~~~~l~~---d~~e~~~~~~~~a---~~~~P~ivfldeid~~a~~~~~~~~ 775 (791)
....+.. ...+.+.++|..| +..+||||||||+|+++..+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~ 147 (456)
T 2c9o_A 92 PFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPM 147 (456)
T ss_dssp CEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC------
T ss_pred eEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCC
Confidence 1111100 0123356677777 7778999999999999998876543
No 117
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.81 E-value=4.2e-09 Score=109.58 Aligned_cols=111 Identities=6% Similarity=0.012 Sum_probs=70.5
Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 648 ~l~~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
....+.++|.+++|+.....++...+..+ ..+..+..+++ ..++|+||+||||||||+++++++...
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~----~~~~~~~~~~~---------~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMGA---------RIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHH----HCHHHHHHTTC---------CCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHH----HCHHHHHHcCC---------CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999876666665543332 22344555433 345689999999999999888887754
Q ss_pred cC----chhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 728 MN----WRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 728 ~~----~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
-. +.+..+.. .....+..+|..+....||++||||++.++..+.
T Consensus 74 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~ 125 (254)
T 1ixz_A 74 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 125 (254)
T ss_dssp TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---
T ss_pred CCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccC
Confidence 21 12222211 1123455667777767899999999999876543
No 118
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.80 E-value=1.3e-08 Score=113.28 Aligned_cols=217 Identities=16% Similarity=0.051 Sum_probs=128.6
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHH-HHHHhhcCCceEEEEEechh---hhh
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARAL-ACAASKAGQKVSFYMRKGAD---VLS 456 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laral-A~~l~~~~~~~~~~~i~~~~---~~~ 456 (791)
|.|++.+|..|.-.+.... .. +....+|||.|+||| ||+||+++ +..+. ...|....++. +..
T Consensus 215 I~G~e~vK~aLll~L~GG~--~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----R~~ft~g~~ss~~gLt~ 281 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV--GK------NSERLHVLLAGYPVV-CSEILHHVLDHLAP----RGVYVDLRRTELTDLTA 281 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC--SS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCS----SEEEEEGGGCCHHHHSE
T ss_pred cCCCHHHHHHHHHHHcCCc--cc------cCCceeEEEECCCCh-HHHHHHHHHHHhCC----CeEEecCCCCCccCceE
Confidence 8899998877766553311 00 122347999999999 99999999 65442 34443222211 110
Q ss_pred hhHhHH-HHHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhcc-------CCCCcEEEeccCC
Q 003859 457 KWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-------DSRGQVVLIGATN 528 (791)
Q Consensus 457 ~~~g~~-~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~-------~~~~~vivIattn 528 (791)
...+.. ...-...+..|.. .|||||||+.+ ....+..|+..|+.- .-..++.||||+|
T Consensus 282 s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 282 VLKEDRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp EEEESSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred EEEcCCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 000000 0000111223322 49999999876 456778888888742 1134689999999
Q ss_pred chh-----------hhhhhhcCCCCcccc-ccCCCCCHHH-------------HHHHHHHHH-hcCCCCCCHHHHHHHHH
Q 003859 529 RVD-----------AIDGALRRPGRFDRE-FNFPLPGCEA-------------RAEILDIHT-RKWKQPPSRELKSELAA 582 (791)
Q Consensus 529 ~~~-----------~Ld~aL~r~gRf~~~-I~~~~Pd~ee-------------r~~IL~~~l-~~~~~~~~~~~~~~LA~ 582 (791)
... .|+++++. ||+.. +.+..|+.+. ..+++...- ......++..+.+.|+.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 864 68899999 99654 4455665432 333333222 23344555554433321
Q ss_pred -----------------HccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHHHhcccccc
Q 003859 583 -----------------SCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (791)
Q Consensus 583 -----------------~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 642 (791)
...|.|++.+..|++-|...|..+... .|+.+|+..|+.-+..+
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~----------------~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD----------------DVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS----------------EECHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC----------------CCCHHHHHHHHHHHHHH
Confidence 134789999999999999888877543 58999999988665543
No 119
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.80 E-value=9.2e-09 Score=87.06 Aligned_cols=74 Identities=38% Similarity=0.568 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeH
Q 003859 550 PLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEK 629 (791)
Q Consensus 550 ~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~ 629 (791)
|+|+.++|.+||+.++.++.+..+.++ ..||..|.||||+||.++|++|+..|+++.. ..|+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl-~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALRERR----------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC----------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC----------------CCCCH
Confidence 689999999999999999876545554 8899999999999999999999999998742 35999
Q ss_pred HHHHHHhcccc
Q 003859 630 YHFIEAMSTIT 640 (791)
Q Consensus 630 ~df~~Al~~~~ 640 (791)
+||..|+..+.
T Consensus 64 ~d~~~Al~~v~ 74 (78)
T 3kw6_A 64 EDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 120
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.79 E-value=5.9e-09 Score=89.90 Aligned_cols=78 Identities=35% Similarity=0.512 Sum_probs=67.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccce
Q 003859 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTV 627 (791)
Q Consensus 548 ~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~l 627 (791)
.-.+|+.++|.+||+.+++++.+..+.++ ..||..|.||||+||.+||++|++.|+++.. ..|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl-~~LA~~T~G~SGADL~~l~~eAa~~alr~~~----------------~~I 69 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALRERR----------------VHV 69 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCC-HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC----------------SEE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC----------------CCC
Confidence 45789999999999999999877655554 7899999999999999999999999998742 359
Q ss_pred eHHHHHHHhcccccc
Q 003859 628 EKYHFIEAMSTITPA 642 (791)
Q Consensus 628 t~~df~~Al~~~~p~ 642 (791)
+++||..|+..+.|.
T Consensus 70 ~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 70 TQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHccC
Confidence 999999999887763
No 121
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.78 E-value=1.9e-09 Score=122.84 Aligned_cols=107 Identities=7% Similarity=0.015 Sum_probs=72.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHc---
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYM--- 728 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~--- 728 (791)
+.++|.+++|+...+.++.+.+..+ ..+..|..+ ++..+.|+||+||||||||+||++++...-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l----~~~~~~~~l---------g~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEM---------GARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHH----HCGGGTTTT---------SCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHh----hchhhhhhc---------cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6789999999987777666654432 122233333 334456999999999999988888776531
Q ss_pred -CchhHHHH----HHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 729 -NWRNFLFI----LLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 729 -~~~~~~l~----~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.+.+..+. ......+..+|..+....||||||||||.++..++
T Consensus 93 i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 93 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 140 (499)
T ss_dssp EEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSS
T ss_pred EEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhc
Confidence 11111111 11224566778888878899999999999987654
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.68 E-value=1.2e-08 Score=97.46 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~ 491 (791)
....++|+||+|+|||+|+++++..+...+..+ +.+++..+... +....+.||||||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~--~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA--AYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE--EEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE--EEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 456899999999999999999999986544333 44455544332 0123477999999987642
Q ss_pred CCCCchhhhhHHHHHHHHHHHhccCCCCcE-EEeccCCchhhhh--hhhcCCCCccccccCC
Q 003859 492 VRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIGATNRVDAID--GALRRPGRFDREFNFP 550 (791)
Q Consensus 492 ~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~v-ivIattn~~~~Ld--~aL~r~gRf~~~I~~~ 550 (791)
. . ...|+.+++.....+.. +||++...|..+. +.|.+ ||..-+.+.
T Consensus 98 ~--------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~ 146 (149)
T 2kjq_A 98 E--------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYE 146 (149)
T ss_dssp H--------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECC
T ss_pred H--------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEE
Confidence 1 1 23344444433333333 5554443454332 77777 775444443
No 123
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.67 E-value=2.1e-08 Score=105.77 Aligned_cols=107 Identities=7% Similarity=0.014 Sum_probs=69.8
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC-
Q 003859 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN- 729 (791)
Q Consensus 651 ~~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~- 729 (791)
.+.++|.++.|+.....++...+..+ .....+..+++ ..++|+||+||||||||+++++++.....
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~----~~~~~l~~~~~---------~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMGA---------RIPKGVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHH----HCHHHHHHTTC---------CCCCEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHH----HCHHHHHHcCC---------CCCCeEEEECCCcChHHHHHHHHHHHcCCC
Confidence 37889999999877766665554332 22334444433 34568999999999999988888776421
Q ss_pred ---chhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhcccc
Q 003859 730 ---WRNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 730 ---~~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
+.+..+.. .....+..+|..+....||++||||++.++..+
T Consensus 101 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 101 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp EEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-
T ss_pred EEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccc
Confidence 12222211 112345566777776789999999999987544
No 124
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.67 E-value=3.9e-08 Score=108.21 Aligned_cols=194 Identities=23% Similarity=0.266 Sum_probs=117.3
Q ss_pred CccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh
Q 003859 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (791)
Q Consensus 379 ~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~ 458 (791)
..++|.......+...+... . .....|||+|++||||+++|+++........ .|+.++|..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~~~ 194 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQEL 194 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCTTT
T ss_pred ccccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCChHH
Confidence 35788887777776665431 1 2345699999999999999999998775443 28889987653321
Q ss_pred -----HhHHH-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----CC---
Q 003859 459 -----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----SR--- 518 (791)
Q Consensus 459 -----~g~~~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----~~--- 518 (791)
+|... ......|..|.. .+||||||+.| ...++..|+..|+.-. ..
T Consensus 195 ~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 195 AESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBE
T ss_pred HHHHhcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcce
Confidence 11100 001123444433 48999999988 4567777888886421 11
Q ss_pred -CcEEEeccCCch--hhhhh-----hhcCCCCcc-ccccCCCCCH--HHHHHHHHHHHhc----CC---CCCCHHHHHHH
Q 003859 519 -GQVVLIGATNRV--DAIDG-----ALRRPGRFD-REFNFPLPGC--EARAEILDIHTRK----WK---QPPSRELKSEL 580 (791)
Q Consensus 519 -~~vivIattn~~--~~Ld~-----aL~r~gRf~-~~I~~~~Pd~--eer~~IL~~~l~~----~~---~~~~~~~~~~L 580 (791)
-.+.||++||.. ..+.. .|.. |+. ..|.+|+... ++...++.+++.. +. ..++.+.+..|
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 145678888752 11111 2222 332 2456666554 5666666666543 22 34677777766
Q ss_pred HHHccCCCHHHHHHHHHHHHHH
Q 003859 581 AASCVGYCGADLKALCTEAAIR 602 (791)
Q Consensus 581 A~~t~G~s~~di~~l~~~A~~~ 602 (791)
....=.-+.++|.+++.+|+..
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 6554333568888888877653
No 125
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.67 E-value=3.6e-08 Score=109.32 Aligned_cols=196 Identities=20% Similarity=0.217 Sum_probs=116.7
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~ 457 (791)
+..++|.......+.+.+... ......|||+|++|||||++|++|+...... ..+|+.++|..+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~~~ 202 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIPRD 202 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSCHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCCHH
Confidence 345777777777776665441 1334579999999999999999998875432 467888898765432
Q ss_pred h-----HhHHH-------HHHHHHHHHHHhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccC-----C---
Q 003859 458 W-----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S--- 517 (791)
Q Consensus 458 ~-----~g~~~-------~~l~~lf~~a~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~-----~--- 517 (791)
. +|... .....+|..|.. .+||||||+.| ...++..|+..|+.-. .
T Consensus 203 ~~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 203 IFEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSB
T ss_pred HHHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 2 11100 001223444433 49999999987 3566777888776421 1
Q ss_pred -CCcEEEeccCCchhhhhhhhcCCCCcc---------ccccCCCCC--HHHHHHHHHHHHhc----CC---CCCCHHHHH
Q 003859 518 -RGQVVLIGATNRVDAIDGALRRPGRFD---------REFNFPLPG--CEARAEILDIHTRK----WK---QPPSRELKS 578 (791)
Q Consensus 518 -~~~vivIattn~~~~Ld~aL~r~gRf~---------~~I~~~~Pd--~eer~~IL~~~l~~----~~---~~~~~~~~~ 578 (791)
...+.||+|||.. +...+ ..|+|. ..|.+|+.. .++...|+.+++.. +. ..++.+.+.
T Consensus 269 ~~~~~rii~at~~~--l~~~~-~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 269 IEVNVRILAATNRN--IKELV-KEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp EECCCEEEEEESSC--HHHHH-HTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeccEEEEEeCCCC--HHHHH-HcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1256788888863 11111 122332 223444432 24555555555533 22 235677776
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 003859 579 ELAASCVGYCGADLKALCTEAAIRA 603 (791)
Q Consensus 579 ~LA~~t~G~s~~di~~l~~~A~~~a 603 (791)
.|....--.+.++|++++.+|+..+
T Consensus 346 ~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 346 LLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 6666543345679999999887643
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.67 E-value=3.3e-08 Score=98.83 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCCCccCCcHH----HHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 375 SVSFDDIGGLSE----YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 375 ~~~~~~l~G~e~----~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
..+|+++++... +++.+..++... .. ...+.+++|+||+|||||+||++|+..+...+..+ +.++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~--~~~~ 89 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY-------EP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSS--LIVY 89 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC-------CS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCE--EEEE
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh-------hh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEE
Confidence 457888876542 344444444321 00 01237899999999999999999999997655444 4455
Q ss_pred chhhhhhhHhHHH-HHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 451 GADVLSKWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 451 ~~~~~~~~~g~~~-~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
+..+...+..... ..+..++..... +.||||||++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 5555443322110 011222333222 3599999997653
No 127
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.64 E-value=9.7e-09 Score=109.51 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
+.+...+||+||||||||+||.++|... +..+.|+.....+.+..+.......+..++..+.... +||||+++.+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL 194 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEAL---GGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNV 194 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHH---HTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTT
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccc
Confidence 4455678999999999999999999873 3345666662221122111334444555555555443 9999999998
Q ss_pred CCCCCCc-hhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhh
Q 003859 490 APVRSSK-QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGA 536 (791)
Q Consensus 490 ~~~~~~~-~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~a 536 (791)
....... ......+.+.+++..|..+....++.+|+++|. ...+++
T Consensus 195 ~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 195 IGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp C-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 6543221 101112334444444443333445677777773 344443
No 128
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.63 E-value=4.6e-08 Score=84.74 Aligned_cols=76 Identities=24% Similarity=0.435 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHH
Q 003859 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHF 632 (791)
Q Consensus 553 d~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df 632 (791)
|.++|.+||+.++.+..+..+.++ ..||..|.||||+||.+||++|++.|+++.. ..|+.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl-~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRW-ELISRLCPNSTGAELRSVCTEAGMFAIRARR----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCH-HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc----------------ccCCHHHH
Confidence 567899999999999887766655 8999999999999999999999999999753 24899999
Q ss_pred HHHhccccccccc
Q 003859 633 IEAMSTITPAAHR 645 (791)
Q Consensus 633 ~~Al~~~~p~~~r 645 (791)
..|+..+.+...+
T Consensus 65 ~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 65 LKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHhcCccc
Confidence 9999998876544
No 129
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.50 E-value=8.5e-08 Score=82.05 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHH
Q 003859 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHF 632 (791)
Q Consensus 553 d~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df 632 (791)
+.++|.+||+.++.++.+..+.++ ..||..|.||||+||.++|++|+..|+++.. ..|+++||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl-~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDL-EDYVARPDKISGADINSICQESGMLAVRENR----------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCT-HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHHHH
Confidence 678999999999999877655554 7899999999999999999999999987642 35999999
Q ss_pred HHHhcccccccc
Q 003859 633 IEAMSTITPAAH 644 (791)
Q Consensus 633 ~~Al~~~~p~~~ 644 (791)
..|+..+.|+..
T Consensus 65 ~~Al~~~~ps~~ 76 (83)
T 3aji_B 65 EKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHccCch
Confidence 999999998754
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.45 E-value=1.1e-07 Score=102.07 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=58.6
Q ss_pred CCCCCccCCcH----HHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHh-hcCCceEEEEE
Q 003859 375 SVSFDDIGGLS----EYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYMR 449 (791)
Q Consensus 375 ~~~~~~l~G~e----~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~i 449 (791)
..+|+++.+.. .++..+..++.. ++-....++||+||||||||+||++||..+. ..+..+.++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~-- 187 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ----------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL-- 187 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH----------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE--
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh----------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE--
Confidence 36788877533 233444444432 1111357899999999999999999999998 776555544
Q ss_pred echhhhhhhHhHH-HHHHHHHHHHHHhcCCeEEEEeCCCcc
Q 003859 450 KGADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (791)
Q Consensus 450 ~~~~~~~~~~g~~-~~~l~~lf~~a~~~~p~VL~IDEiD~L 489 (791)
.+..++..+.... ...+..++.... .+.||||||++..
T Consensus 188 ~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 188 HFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp EHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred EHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4445544322110 001112222222 3459999999754
No 131
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.44 E-value=2.8e-07 Score=118.40 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=83.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhhhHh------------HHHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG------------EAERQLKLLFEEAQR 475 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~~~g------------~~~~~l~~lf~~a~~ 475 (791)
+.++.+++|+||||||||+||.+++.++...+..+.|+..... .+.....| ..+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7788999999999999999999999999888888888876542 12222222 344666777778888
Q ss_pred cCCeEEEEeCCCccCCCCC----Cchhhh--hHHHHHHHHHHHhccCCCCcEEEeccC
Q 003859 476 NQPSIIFFDEIDGLAPVRS----SKQEQI--HNSIVSTLLALMDGLDSRGQVVLIGAT 527 (791)
Q Consensus 476 ~~p~VL~IDEiD~L~~~~~----~~~~~~--~~~v~~~Ll~~l~~~~~~~~vivIatt 527 (791)
..|+|||||+++.+++... ..+... ..+++.+++..|.++.....++||++.
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8999999999998887421 111111 345667777766666556666666553
No 132
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.43 E-value=2.4e-06 Score=92.72 Aligned_cols=162 Identities=13% Similarity=0.046 Sum_probs=108.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCC-ceEEEEEechhhhhhhHhHHHHHHHHHHHHHH----hcCCeEEEEeCC
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQ-KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEI 486 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~----~~~p~VL~IDEi 486 (791)
.+..+|||||+|+||++++++|++.+...+. ....+.+++. ..++.++..+. .....||+|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 4568999999999999999999998754432 2233333321 11223333322 234569999999
Q ss_pred Cc-cCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc-----hhhhhhhhcCCCCccccccCCCCCHHHHHHH
Q 003859 487 DG-LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-----VDAIDGALRRPGRFDREFNFPLPGCEARAEI 560 (791)
Q Consensus 487 D~-L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~-----~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~I 560 (791)
|. +. ....+.|+..++... .+.++||++++. ...+.+++.+ |+ .++.|..++..+...+
T Consensus 86 ~~kl~-----------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 86 ENGPN-----------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp SSCCC-----------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred CCCCC-----------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 87 63 234566788887432 233444444432 2457788887 76 4789999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 003859 561 LDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (791)
Q Consensus 561 L~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~ 600 (791)
++..+...+..++.+.+..|+..+.| ..+.+.+.+...+
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 99999998888899988888877765 4555555555443
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.40 E-value=9e-08 Score=102.15 Aligned_cols=100 Identities=8% Similarity=-0.059 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCc-------
Q 003859 658 VAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNW------- 730 (791)
Q Consensus 658 dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~------- 730 (791)
++.|+...++.+..++.... .+..+.++|+.. -....++||+||||||||++|++++..+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~----~~~~~~~~g~~~------~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~ 101 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL----VERARQKLGLAH------ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH 101 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH----HHHHHHHHTCCS------SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HccChHHHHHHHHHHHHHHH----hHHHHHHcCCCC------CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc
Confidence 46666666666665554421 133444554431 1223369999999999999888777765210
Q ss_pred ----hhHHHHH----HHHHHHHHHhhhhhcCCceEEEEeCchhhcccc
Q 003859 731 ----RNFLFIL----LVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 731 ----~~~~l~~----d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
....+.. .....+..+|..+ .++||||||++.++...
T Consensus 102 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 102 LVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp EEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC
T ss_pred EEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCC
Confidence 1111100 0112334445555 48999999999987543
No 134
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.35 E-value=1.4e-07 Score=103.47 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=43.5
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC----chhHHHH------HHHHHHHHHHhhhh----hcCCceEEEEeCchhhcc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN----WRNFLFI------LLVFQLFFQILVPR----HQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~----~~~~~l~------~d~~e~~~~~~~~a----~~~~P~ivfldeid~~a~ 768 (791)
+.++||+||||||||++|++++..+-. +....+. ......+..+|..+ ....|||||||||+.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~ 130 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR 130 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc
Confidence 348999999999999888777765411 1111111 11123344444443 334699999999999987
Q ss_pred cc
Q 003859 769 QY 770 (791)
Q Consensus 769 ~~ 770 (791)
.+
T Consensus 131 ~~ 132 (363)
T 3hws_A 131 KS 132 (363)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 135
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=3e-07 Score=96.45 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=45.0
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcCch-----hHH-----HHHHHHHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMNWR-----NFL-----FILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~~~-----~~~-----l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
.++||+||||||||++|++++... +.. .+. ........+..+|..+....|+|||||||+.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh-CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 389999999999998888877753 211 000 01122244556667777778999999999998653
No 136
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.22 E-value=7.8e-07 Score=88.70 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
++..+++|||||||||||++|.+||+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44557899999999999999999999984
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.20 E-value=3.1e-06 Score=82.42 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc---------Cc-----hhHHHH------HHHHHHHHHHhhhh-hcCCceEEEEeC
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM---------NW-----RNFLFI------LLVFQLFFQILVPR-HQRRHWCIYLVK 762 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~---------~~-----~~~~l~------~d~~e~~~~~~~~a-~~~~P~ivflde 762 (791)
.++||+||||||||++|++++..+. +. ....+. ......+..++... ....|+||||||
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe 123 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 123 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEET
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 4799999999999999988887652 11 111111 11223333443332 234599999999
Q ss_pred chhhccc
Q 003859 763 LEEQRHQ 769 (791)
Q Consensus 763 id~~a~~ 769 (791)
++.+...
T Consensus 124 ~~~l~~~ 130 (195)
T 1jbk_A 124 LHTMVGA 130 (195)
T ss_dssp GGGGTT-
T ss_pred HHHHhcc
Confidence 9998754
No 138
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.19 E-value=3.9e-07 Score=91.32 Aligned_cols=130 Identities=18% Similarity=0.257 Sum_probs=73.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh-----hcC-CceEEEEEechhhhhhhH----------hHHHH--HHHHHHHHH--
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS-----KAG-QKVSFYMRKGADVLSKWV----------GEAER--QLKLLFEEA-- 473 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~-----~~~-~~~~~~~i~~~~~~~~~~----------g~~~~--~l~~lf~~a-- 473 (791)
..+|++|+||+|||++|.+++.... ..+ ..+-+..++ .+..... ..... ....++.-+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~--gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK--GLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT--TBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC--CccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 4689999999999999988765542 223 222222222 2211000 00000 001222221
Q ss_pred HhcCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCC
Q 003859 474 QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPG 553 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd 553 (791)
.....+||||||++.+++.+....+. . .++..+.... ...+-||.+|+.+..|+.+|+. |+...+++..|.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred cccCceEEEEEChhhhccCccccchh--H----HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 23346799999999997654221111 1 2444554322 3345667777779999999998 999888888764
Q ss_pred H
Q 003859 554 C 554 (791)
Q Consensus 554 ~ 554 (791)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 139
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.17 E-value=4.9e-07 Score=77.09 Aligned_cols=69 Identities=25% Similarity=0.276 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhCCCccCCCccccccccccceeHHHHHH
Q 003859 555 EARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIE 634 (791)
Q Consensus 555 eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~ 634 (791)
++|.+||+.++.++.+..+.++ ..||..|.||||+||.++|++|+..|+++.. ..|+.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl-~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADL-DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCS-TTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHHHHHH
Confidence 4689999999998776545444 7899999999999999999999999999742 2599999999
Q ss_pred Hhcccc
Q 003859 635 AMSTIT 640 (791)
Q Consensus 635 Al~~~~ 640 (791)
|+..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998875
No 140
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.14 E-value=1.7e-06 Score=95.03 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=73.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHHHHHHHHHHHhcCCeEEEEeCCCc
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~ 488 (791)
++.++..++|+||+|+|||||+++|+..+. ..++.+....- .+ ...+..+ .+..++|+|+++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~-----g~~~~~~~~~~--~~----~~~lg~~------~q~~~~l~dd~~~ 227 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG-----GKALNVNLPLD--RL----NFELGVA------IDQFLVVFEDVKG 227 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC-----CEEECCSSCTT--TH----HHHHGGG------TTCSCEEETTCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC-----CcEEEEeccch--hH----HHHHHHh------cchhHHHHHHHHH
Confidence 667788999999999999999999998763 23332222211 00 0011111 2346889999998
Q ss_pred cCC-CCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCC
Q 003859 489 LAP-VRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (791)
Q Consensus 489 L~~-~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~ 551 (791)
+.. .+...... .......+.+.+++ .+.|+++||+++.+ +++.++++++..+.+..
T Consensus 228 ~~~~~r~l~~~~-~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 228 TGGESRDLPSGQ-GINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp STTTTTTCCCCS-HHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHhhccccC-cchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 875 22111100 00022344555553 35677889999999 78999999987776654
No 141
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.13 E-value=2.1e-06 Score=93.78 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.5
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.++||+||||||||++|++++..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999988888887654
No 142
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.13 E-value=3.1e-06 Score=82.27 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=41.9
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC---------c-----hhHHHH------HHHHHHHHHHhhhhhcC-CceEEEEe
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN---------W-----RNFLFI------LLVFQLFFQILVPRHQR-RHWCIYLV 761 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~---------~-----~~~~l~------~d~~e~~~~~~~~a~~~-~P~ivfld 761 (791)
..++||+||||||||++|++++..+.. . ....+. ......+..++...... .|++||||
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 347999999999999999888876522 1 111111 01112333334333332 68999999
Q ss_pred Cchhhccc
Q 003859 762 KLEEQRHQ 769 (791)
Q Consensus 762 eid~~a~~ 769 (791)
|++.+...
T Consensus 123 e~~~l~~~ 130 (187)
T 2p65_A 123 EIHTVVGA 130 (187)
T ss_dssp TGGGGSSS
T ss_pred CHHHhccc
Confidence 99998743
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.05 E-value=1.7e-06 Score=93.57 Aligned_cols=94 Identities=10% Similarity=-0.051 Sum_probs=58.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCc--
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNW-- 730 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~-- 730 (791)
+..|.++.|....++.+..++.... . +-...+++||+||||||||++|++++..+...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~----------~----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAK----------K----------RNECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHH----------H----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH----------h----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 4478888888888887777765521 0 00113479999999999998888776653211
Q ss_pred --hhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhcccc
Q 003859 731 --RNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 731 --~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
....+ .....+..++.. ...+++||||||+.+....
T Consensus 85 ~~~~~~~--~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~ 122 (338)
T 3pfi_A 85 TTAAPMI--EKSGDLAAILTN--LSEGDILFIDEIHRLSPAI 122 (338)
T ss_dssp EEEGGGC--CSHHHHHHHHHT--CCTTCEEEEETGGGCCHHH
T ss_pred Eecchhc--cchhHHHHHHHh--ccCCCEEEEechhhcCHHH
Confidence 11111 011233333333 2369999999999886543
No 144
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=5.6e-05 Score=74.15 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+.|.||+|+|||||++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999885
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.00 E-value=1e-05 Score=80.69 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCch-
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWR- 731 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~- 731 (791)
+..|.++.|-...++.+..++... ..+.+||+||||||||+++..++..+....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~-------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 67 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK-------------------------NIPHLLFSGPPGTGKTATAIALARDLFGENW 67 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGG
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC-------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 345556666666666666665431 123599999999999998888877642110
Q ss_pred --------hHH--HHHHHHHHHHHHhhh--hhcCCceEEEEeCchhhcc
Q 003859 732 --------NFL--FILLVFQLFFQILVP--RHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 732 --------~~~--l~~d~~e~~~~~~~~--a~~~~P~ivfldeid~~a~ 768 (791)
... -...+...+...+.. .....+++|||||++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 68 RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp GGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred ccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence 000 001111222222211 1235699999999998754
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.1e-05 Score=86.52 Aligned_cols=67 Identities=7% Similarity=0.097 Sum_probs=44.1
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc--------------hhH-------H---HHHHH----------HHHHHHHhh
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW--------------RNF-------L---FILLV----------FQLFFQILV 748 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~--------------~~~-------~---l~~d~----------~e~~~~~~~ 748 (791)
++++||+||||||||++++.++..+... ... . +...+ .+.+...|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 4589999999999999998888766210 000 0 01111 133455555
Q ss_pred hh--hcCCceEEEEeCchhhccc
Q 003859 749 PR--HQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 749 ~a--~~~~P~ivfldeid~~a~~ 769 (791)
.. ....|+||||||+|.+..+
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~~q 147 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLLSE 147 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSCCT
T ss_pred HhhhccCCceEEEEecHHHhhcc
Confidence 43 4557999999999999843
No 147
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.99 E-value=1.3e-06 Score=93.06 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=40.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHHHH---------HHHHHHH-----------HHHhhhhhcC-CceEEEEeCc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFLFI---------LLVFQLF-----------FQILVPRHQR-RHWCIYLVKL 763 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~---------~d~~e~~-----------~~~~~~a~~~-~P~ivfldei 763 (791)
.+||+||||||||++|++++..+.....+.+. ..+.+++ ...|..+... ..+||||||+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi 128 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAI 128 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeCh
Confidence 69999999999999998888876432211110 0111221 0123333332 3599999999
Q ss_pred hhhcccc
Q 003859 764 EEQRHQY 770 (791)
Q Consensus 764 d~~a~~~ 770 (791)
+.+....
T Consensus 129 ~~l~~~~ 135 (311)
T 4fcw_A 129 EKAHPDV 135 (311)
T ss_dssp GGSCHHH
T ss_pred hhcCHHH
Confidence 9886543
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=7.8e-06 Score=93.95 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCch
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWR 731 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~ 731 (791)
.+..|.++.|.+..++.+..|+.... .....++...|.. +....+++||+||||||||++|.+++..+ ++.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~-------~~~~~~~~~~g~~-~~~~~~~lLL~GppGtGKTtla~~la~~l-~~~ 104 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWE-------NSKKNSFKHAGKD-GSGVFRAAMLYGPPGIGKTTAAHLVAQEL-GYD 104 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHH-------HHHHTTTCCCCTT-STTSCSEEEEECSTTSSHHHHHHHHHHHT-TCE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhH-------hhchhhccccCcc-CCCCCcEEEEECCCCCCHHHHHHHHHHHc-CCC
Confidence 45678888888888888888876521 1111112111110 11234589999999999998887777654 321
Q ss_pred hH-----HHH-HHHH-HH---------HHHHhhhh-----hcCCceEEEEeCchhhccc
Q 003859 732 NF-----LFI-LLVF-QL---------FFQILVPR-----HQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 732 ~~-----~l~-~d~~-e~---------~~~~~~~a-----~~~~P~ivfldeid~~a~~ 769 (791)
.. .+. ..+. .. +..+|..+ ....++||||||++.+...
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh
Confidence 11 000 0111 11 11222222 2356999999999998764
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=1.7e-06 Score=81.96 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=38.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHH-----HHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVF-----QLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~-----e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.+||+||||||||++|+++.........+.+ .+.. ......|..+ ..++||||||+.+....+
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a---~~g~l~ldei~~l~~~~q 93 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA---QGGTLVLSHPEHLTREQQ 93 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH---TTSCEEEECGGGSCHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc---CCcEEEEcChHHCCHHHH
Confidence 6999999999999777776654321111111 1000 1122233334 368999999999876544
No 150
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.95 E-value=9.4e-07 Score=83.52 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=38.4
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc---CchhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM---NWRNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~---~~~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
..+||+||||||||++|++++.... .+....+.. ......|..+. ..+||||||+.+....+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~a~---~~~l~lDei~~l~~~~q 92 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLI---DMPMELLQKAE---GGVLYVGDIAQYSRNIQ 92 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHH---HCHHHHHHHTT---TSEEEEEECTTCCHHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCCh---HhhhhHHHhCC---CCeEEEeChHHCCHHHH
Confidence 3699999999999977766654322 111111111 11334444443 68999999999876543
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.94 E-value=2e-05 Score=79.60 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
|+.+...++|+||+|+|||+|++.++..+...+..+.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 35566789999999999999999999777555555666543
No 152
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.91 E-value=6.7e-06 Score=90.41 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc-----hhHH-----H-HHHHHHHHHHHhhhh----hcCCceEEEEeCchhhc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW-----RNFL-----F-ILLVFQLFFQILVPR----HQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~-----~~~~-----l-~~d~~e~~~~~~~~a----~~~~P~ivfldeid~~a 767 (791)
..++||+||||||||++|++++..+ +. .... + -.++...+..++..+ ....++||||||++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL-DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 3479999999999998888877754 21 1000 0 001112233333222 12368999999999998
Q ss_pred cc
Q 003859 768 HQ 769 (791)
Q Consensus 768 ~~ 769 (791)
..
T Consensus 151 ~~ 152 (376)
T 1um8_A 151 RL 152 (376)
T ss_dssp --
T ss_pred hh
Confidence 76
No 153
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.90 E-value=1.1e-05 Score=90.87 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=39.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHcC----chhHHH-HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYMN----WRNFLF-ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~~----~~~~~l-~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
+++||+||||||||++|+.++..+-. +..... ..++.+.+..+........++|||||||+.+....+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 48999999999999888877765411 000000 122333333333333345699999999998876544
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=6.3e-06 Score=92.78 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=42.3
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc----C-----chhHHHHHHHHHHHHH----HhhhhhcCCceEEEEeCchhhcc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM----N-----WRNFLFILLVFQLFFQ----ILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~----~-----~~~~~l~~d~~e~~~~----~~~~a~~~~P~ivfldeid~~a~ 768 (791)
..+|||||||||||+||.+++..+. + +....+..++...+.. .|..+.+..|.||||||++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 3799999999999999888877652 1 1222333333322221 23333333699999999999875
No 155
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.89 E-value=9.7e-06 Score=85.99 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=39.8
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC----chhHHHH----------HHHHHHHHH---HhhhhhcCCceEEEEeCchh
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN----WRNFLFI----------LLVFQLFFQ---ILVPRHQRRHWCIYLVKLEE 765 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~----~~~~~l~----------~d~~e~~~~---~~~~a~~~~P~ivfldeid~ 765 (791)
+.++||+||||||||++|++++..+-. .....+. ..+.+.+.. .+..+ ..++||||||++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAV--EQNGIVFIDEIDK 127 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHH--HHHCEEEEECGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhc--cCCCEEEEEChhh
Confidence 348999999999999888888776521 0000000 001122221 11122 2389999999999
Q ss_pred hcccc
Q 003859 766 QRHQY 770 (791)
Q Consensus 766 ~a~~~ 770 (791)
+....
T Consensus 128 l~~~~ 132 (310)
T 1ofh_A 128 ICKKG 132 (310)
T ss_dssp GSCCS
T ss_pred cCccc
Confidence 98765
No 156
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.88 E-value=9.3e-06 Score=93.84 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=42.0
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC------chhHHH-----------HHHHHHHHHHHhhhhhcCCceEEEEeCchh
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN------WRNFLF-----------ILLVFQLFFQILVPRHQRRHWCIYLVKLEE 765 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~------~~~~~l-----------~~d~~e~~~~~~~~a~~~~P~ivfldeid~ 765 (791)
.+.+||+||||||||++|++++..+-. ..+... ...+...+.+.|..+....| |||||||+.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~ 186 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDK 186 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhh
Confidence 447999999999999988888876511 111000 01112334556777776667 999999999
Q ss_pred hccccc
Q 003859 766 QRHQYS 771 (791)
Q Consensus 766 ~a~~~~ 771 (791)
+...++
T Consensus 187 l~~~~~ 192 (543)
T 3m6a_A 187 MSSDFR 192 (543)
T ss_dssp CC----
T ss_pred hhhhhc
Confidence 987643
No 157
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.88 E-value=1.7e-05 Score=80.00 Aligned_cols=23 Identities=22% Similarity=0.194 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+||+||||||||++++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999988887765
No 158
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.87 E-value=0.00018 Score=83.80 Aligned_cols=180 Identities=17% Similarity=0.104 Sum_probs=97.5
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH---hhcC-CceEEEEEech-
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA---SKAG-QKVSFYMRKGA- 452 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~-~~~~~~~i~~~- 452 (791)
...++|.+..++.|...+... -.....|+|+||+|+|||+||..+++.. ...+ ..+.++.+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 356899999999999887531 1234579999999999999999998643 2222 13444444432
Q ss_pred --hhhhhhHh-----------------HHHHHHHHHHHHHHh-cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 453 --DVLSKWVG-----------------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 453 --~~~~~~~g-----------------~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
.++..+.. ........+...... ..|.+|+||+++.. . .+.
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~----~l~-- 252 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W----VLK-- 252 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H----HHH--
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H----HHH--
Confidence 11111100 001111112222222 26889999999732 1 112
Q ss_pred hccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHHH
Q 003859 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (791)
Q Consensus 513 ~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~di 592 (791)
.+ ...+.||.||....... .+. +....+..+...+.++-.++|...+.... .........|+..|.|+ |-.|
T Consensus 253 -~l--~~~~~ilvTsR~~~~~~-~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~-PLal 324 (591)
T 1z6t_A 253 -AF--DSQCQILLTTRDKSVTD-SVM--GPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGS-PLVV 324 (591)
T ss_dssp -TT--CSSCEEEEEESCGGGGT-TCC--SCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTC-HHHH
T ss_pred -Hh--cCCCeEEEECCCcHHHH-hcC--CCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCC-cHHH
Confidence 22 22345555665432211 111 11111122246789999999988775421 11134457899999886 4444
Q ss_pred HHH
Q 003859 593 KAL 595 (791)
Q Consensus 593 ~~l 595 (791)
..+
T Consensus 325 ~~~ 327 (591)
T 1z6t_A 325 SLI 327 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.87 E-value=2.6e-05 Score=84.83 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=53.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh--hhhhhH------------hHHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWV------------GEAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--~~~~~~------------g~~~~~l~~lf~~a~ 474 (791)
|+.+...++|+||||+|||+|+..+|..+...+..+.|+...... .....+ ...+..+..+...+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 456677899999999999999999999987666566665433210 000000 112222222222334
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...+.+|+||.+-.+++
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46788999999998886
No 160
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.85 E-value=1.2e-05 Score=83.76 Aligned_cols=27 Identities=41% Similarity=0.509 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+.++||||||||||||++|.+||+.+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 335689999999999999999999975
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.78 E-value=0.00019 Score=82.90 Aligned_cols=172 Identities=12% Similarity=0.060 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH----HHhhcCCceEEEEEechh----
Q 003859 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC----AASKAGQKVSFYMRKGAD---- 453 (791)
Q Consensus 382 ~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~----~l~~~~~~~~~~~i~~~~---- 453 (791)
+|.+..++.|.+.+... +-.....|.|+|+.|+|||+||+.+++ .....+..+.++.+....
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999887431 012346788999999999999999997 333333333444443321
Q ss_pred --hhhhhHhHH----------------HHHHHHHHHHHHhcC-CeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhc
Q 003859 454 --VLSKWVGEA----------------ERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (791)
Q Consensus 454 --~~~~~~g~~----------------~~~l~~lf~~a~~~~-p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~ 514 (791)
++....... ...+...+....... +.+|+||+++... .+ .+. ..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~---~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA---QE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH---HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc---cc
Confidence 111111000 011223333333444 7899999997421 11 111 11
Q ss_pred cCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHccCCC
Q 003859 515 LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ-PPSRELKSELAASCVGYC 588 (791)
Q Consensus 515 ~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~~~l~~~~~-~~~~~~~~~LA~~t~G~s 588 (791)
....||.||.... +...+. -....+.++..+.++-.++|..+...... .........|+..+.|+.
T Consensus 264 ----~gs~ilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LRLRCLVTTRDVE-ISNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TTCEEEEEESBGG-GGGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CCCEEEEEcCCHH-HHHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 2345555665432 221111 12346889999999999999887533221 111234567888888763
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.78 E-value=3.3e-05 Score=82.96 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=40.5
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc--C-----chhHHHHHHHHHHHH----HHhhhhhcCCceEEEEeCchhhcc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM--N-----WRNFLFILLVFQLFF----QILVPRHQRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~--~-----~~~~~l~~d~~e~~~----~~~~~a~~~~P~ivfldeid~~a~ 768 (791)
.++||+||||||||++|.+++..+. + +....+..++...+. ..|..+.. .|+||||||++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG 112 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC
Confidence 4799999999999999888887652 1 122222222222221 12222332 489999999999875
No 163
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.78 E-value=7.2e-06 Score=88.77 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
++||+||||||||++|++++..+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 699999999999988888877553
No 164
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=3.3e-05 Score=75.38 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=37.2
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc---Cc-----hhHHHHHHHHHHHHH-----HhhhhhcCCceEEEEeCchh
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM---NW-----RNFLFILLVFQLFFQ-----ILVPRHQRRHWCIYLVKLEE 765 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~---~~-----~~~~l~~d~~e~~~~-----~~~~a~~~~P~ivfldeid~ 765 (791)
.+++|+||||||||+++++++..+. +. ....+...+...+.. ++... ..|.+|+|||+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 4799999999999999998887764 31 112222222211111 11112 2589999999984
No 165
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.76 E-value=5.2e-05 Score=82.72 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 657 VVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 657 ~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
..+.|-...++.+..++...+. -..+..+||+||||||||+++++++..+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------------------GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------------------SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------------------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5556667677777766544210 0113479999999999999988887755
No 166
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.75 E-value=3.6e-06 Score=87.73 Aligned_cols=24 Identities=21% Similarity=0.074 Sum_probs=20.1
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
..+||+||||||||++|++++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 479999999999998887777653
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.74 E-value=7.1e-05 Score=76.31 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
|+.+...++|+||||+|||+|++.||..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45667789999999999999999999863
No 168
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.72 E-value=7.1e-05 Score=81.90 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=53.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh--hhhhhH------------hHHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWV------------GEAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--~~~~~~------------g~~~~~l~~lf~~a~ 474 (791)
|+.+...++|+||||+|||+||..+|..+...+..+.|+...... +..... ...+..+..+...+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 456677899999999999999999999887666677776654321 110000 011222222222233
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...+.+||||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45688999999999985
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=5.5e-05 Score=80.69 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=53.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCch
Q 003859 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNWR 731 (791)
Q Consensus 652 ~~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~~ 731 (791)
.+..|.++.|-...++.+..++... ..+.+||+||||||||++|++++..+....
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG-------------------------SMPHLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT-------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC-------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 3445666777776776666665431 123699999999999999888887653211
Q ss_pred ---------hHHH-HHHH-HHHHHHHhh-hhh-cCCceEEEEeCchhhcc
Q 003859 732 ---------NFLF-ILLV-FQLFFQILV-PRH-QRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 732 ---------~~~l-~~d~-~e~~~~~~~-~a~-~~~P~ivfldeid~~a~ 768 (791)
.... ..+. .+.+..... ... ...+.||||||++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (327)
T ss_dssp HHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred ccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence 0000 0011 112222111 111 14589999999998754
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.72 E-value=4.9e-05 Score=81.49 Aligned_cols=91 Identities=12% Similarity=-0.063 Sum_probs=52.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcC---
Q 003859 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMN--- 729 (791)
Q Consensus 653 ~v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~--- 729 (791)
+.+|.++.|....++.+..++... ..+..+||+||||||||+++.+++..+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG------------------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 345666667777777776665431 11236889999999999888887765411
Q ss_pred -chhHHH-HHHHHHHHHHHh-hhhhcCCceEEEEeCchhhc
Q 003859 730 -WRNFLF-ILLVFQLFFQIL-VPRHQRRHWCIYLVKLEEQR 767 (791)
Q Consensus 730 -~~~~~l-~~d~~e~~~~~~-~~a~~~~P~ivfldeid~~a 767 (791)
+..... ...+.+.+.... .......+.||||||++.+.
T Consensus 78 ~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 78 FVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp EEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred EEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 111111 111112222211 11122368999999999987
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.71 E-value=3.1e-05 Score=84.31 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=54.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh--hhhhhHh------------HHHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWVG------------EAERQLKLLFEEAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--~~~~~~g------------~~~~~l~~lf~~a~ 474 (791)
|+.+...++|+||||+|||+||..+|..+...+..+.|+...... ......| .....+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 456677899999999999999999998887766667776554311 1111111 12222222222333
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...|.+||||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55689999999998874
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.68 E-value=8.6e-06 Score=82.70 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=39.1
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHH---HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLF---ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l---~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
..++||+||||||||++|++++..+.......+ ..++...+..++... ..|.+|||||++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGL--EQFDLICIDDVDAVAGH 119 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTG--GGSSEEEEETGGGGTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhc--cCCCEEEEeccccccCC
Confidence 347999999999999988888776532100000 011111122222222 34899999999987653
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.66 E-value=1.1e-05 Score=86.40 Aligned_cols=93 Identities=15% Similarity=-0.037 Sum_probs=53.1
Q ss_pred CccchHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHHcCc---
Q 003859 654 LSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFYMNW--- 730 (791)
Q Consensus 654 v~~~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~~~~--- 730 (791)
..|.++.|....++.+..++..+. ..+ .....+||+||||||||++|++++..+...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~----------~~~----------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK----------ARK----------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH----------HHC----------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH----------ccC----------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 356666666666666666544311 000 113479999999999998888877654211
Q ss_pred -hhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 731 -RNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 731 -~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
....+ ... ..+...|..+ ...+++|||||++.+...
T Consensus 69 ~~~~~~-~~~-~~l~~~l~~~-~~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 69 TSGPAI-EKP-GDLAAILANS-LEEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp ECTTTC-CSH-HHHHHHHTTT-CCTTCEEEETTTTSCCHH
T ss_pred Eecccc-CCh-HHHHHHHHHh-ccCCCEEEEECCcccccc
Confidence 10100 001 1222334432 235899999999987653
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.65 E-value=4.3e-05 Score=75.96 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=21.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.++||+||||||||++|++++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999888887653
No 175
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.63 E-value=6.1e-05 Score=85.17 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=37.8
Q ss_pred CCCCCCccC-CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 003859 374 ESVSFDDIG-GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (791)
Q Consensus 374 ~~~~~~~l~-G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (791)
.+.+|++|- ++..++..+...+.. ....+||.|+||||||+++.+++..+...+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 456777764 455555555444332 1237999999999999999999999976664
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=1.8e-05 Score=84.33 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=37.9
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCch---------hHH--HHHHHHHHHHHHh--hhhh-cCCceEEEEeCchhhcc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWR---------NFL--FILLVFQLFFQIL--VPRH-QRRHWCIYLVKLEEQRH 768 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~---------~~~--l~~d~~e~~~~~~--~~a~-~~~P~ivfldeid~~a~ 768 (791)
.+||+||||||||++|.+++..+.... ... -...+.+.+..+. .... ...++||||||++.+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 499999999999999888887643210 000 0111222222221 1111 23489999999998754
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=0.0001 Score=80.62 Aligned_cols=50 Identities=18% Similarity=0.007 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHhhhhccCCCCCCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 657 VVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 657 ~dIggLk~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~g~~~~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
..+.|-...++.+..++..... + ..+..+||+||||||||++|.+++..+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------------------~-~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------------------N-EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------------------T-CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------------------C-CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4455666677777766544210 0 113379999999999999988887754
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=3.7e-05 Score=83.10 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+++||+||||||||++|++++..+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999999888888764
No 179
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=8.3e-05 Score=81.10 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=53.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhhhHh-----------HHHHHHHHHHH-HHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG-----------EAERQLKLLFE-EAQ 474 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~~~g-----------~~~~~l~~lf~-~a~ 474 (791)
|+.+...++|+|+||+|||+||..+|..+...+..+.|+..... .......+ .....+..++. .+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45677789999999999999999999988776666776655321 11100000 01122222332 233
Q ss_pred hcCCeEEEEeCCCccCC
Q 003859 475 RNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 475 ~~~p~VL~IDEiD~L~~ 491 (791)
...+.+||||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46688999999998874
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.58 E-value=2.4e-05 Score=83.13 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=38.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchh-HHH-H---------HHHHHHHHHHh-hhhh-cCCceEEEEeCchhhccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRN-FLF-I---------LLVFQLFFQIL-VPRH-QRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~-~~l-~---------~d~~e~~~~~~-~~a~-~~~P~ivfldeid~~a~~ 769 (791)
.+||+||||||||++|.+++..+..... ..+ . ..+.+.+.... .... ...+.||||||++.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH
Confidence 5999999999999988888876532110 000 0 00112222211 1111 245899999999987543
No 181
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.56 E-value=0.00076 Score=84.99 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred CCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh---cCC-ceEEEEEechh
Q 003859 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK---AGQ-KVSFYMRKGAD 453 (791)
Q Consensus 378 ~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~---~~~-~~~~~~i~~~~ 453 (791)
...++|++..++.|.+.+... -....-|.|+|+.|+|||+||+.+++.... ... .+.++.+....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 346899999999999987541 123456889999999999999999876421 122 23344443311
Q ss_pred ---hhhhh------Hh----------HHHHHHHHHHHHHHh--cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHH
Q 003859 454 ---VLSKW------VG----------EAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (791)
Q Consensus 454 ---~~~~~------~g----------~~~~~l~~lf~~a~~--~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l 512 (791)
+.... .+ .....+...+..... ..+.+|+||+++... .+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HH
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HH
Confidence 11000 00 001112222222222 237899999997331 12
Q ss_pred hccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHccCCCHHH
Q 003859 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL-PGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (791)
Q Consensus 513 ~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~-Pd~eer~~IL~~~l~~~~~~~~~~~~~~LA~~t~G~s~~d 591 (791)
..+. ....||.||........ +. .....+.++. .+.++-.++|..+....... .......|+..+.|+ |-.
T Consensus 252 ~~~~--~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 252 KAFD--NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp TTTC--SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTC-HHH
T ss_pred Hhhc--CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCC-HHH
Confidence 2222 23355566655432211 11 1234567775 88899999998777443322 234457899999886 444
Q ss_pred HHHH
Q 003859 592 LKAL 595 (791)
Q Consensus 592 i~~l 595 (791)
|..+
T Consensus 324 l~~~ 327 (1249)
T 3sfz_A 324 VSLI 327 (1249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 182
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.55 E-value=4.9e-05 Score=86.16 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=38.3
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC---------chhHHH--HHHH----HHHHHHHhhhhhcCCceEEEEe
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN---------WRNFLF--ILLV----FQLFFQILVPRHQRRHWCIYLV 761 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~---------~~~~~l--~~d~----~e~~~~~~~~a~~~~P~ivfld 761 (791)
.+++||+||||||||++|.+++..+.. .....+ ...+ -..+..+|..+....|+|||||
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 347999999999999988888877522 111100 0111 1234456666776789999999
No 183
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00019 Score=76.18 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc--CCceEEEEEechhhhh----hhHh------------HHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKGADVLS----KWVG------------EAERQLKLLF 470 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~i~~~~~~~----~~~g------------~~~~~l~~lf 470 (791)
|+.+. -++|+||||+|||+|+-.++..+... +..+.|+ +...-+. ..+| ..+.....+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyI--d~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFY--DSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEE--ESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE--eccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 45555 68999999999999999888877654 4444444 3322111 0001 1122201222
Q ss_pred HH---HHhcCCeEEEEeCCCccCCC
Q 003859 471 EE---AQRNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 471 ~~---a~~~~p~VL~IDEiD~L~~~ 492 (791)
.. +....|.+|+||-|-.|++.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHHhhccCceEEEEecccccccc
Confidence 22 24457999999999999853
No 184
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00039 Score=70.80 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=32.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|+.+...++|+||||+|||+|+..+|..+...+..+.|+...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 456677899999999999999999987776555566665543
No 185
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.50 E-value=0.00043 Score=77.19 Aligned_cols=78 Identities=24% Similarity=0.198 Sum_probs=54.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----hhhh-------------HhHHHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKW-------------VGEAERQLKLLFEEA 473 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~-----~~~~-------------~g~~~~~l~~lf~~a 473 (791)
+|..|+|+|++|+||||++..||..+...+..+.++..+.... +..| .......+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999988888887776553211 0000 012334455667777
Q ss_pred HhcCCeEEEEeCCCcc
Q 003859 474 QRNQPSIIFFDEIDGL 489 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L 489 (791)
......+||||-.-.+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7766789999987543
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.49 E-value=0.00021 Score=73.04 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
|+.+...++|.||+|+|||||++.|+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566778999999999999999999943
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=6.8e-05 Score=81.70 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.8
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
..++|+||||||||++++.++..+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999998887754
No 188
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=8.2e-05 Score=74.60 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEE
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (791)
|+.+...++|+||||+|||+|+..+|. ..+..+.|+..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 466777899999999999999999998 23445555544
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.47 E-value=0.00011 Score=79.05 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc------CCceEEEEEech---hhhhhh---H-----------------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA------GQKVSFYMRKGA---DVLSKW---V----------------- 459 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~------~~~~~~~~i~~~---~~~~~~---~----------------- 459 (791)
|+.+...++|+||||+|||+||..+|..+... +..+.|+..... .-+..+ .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 46677789999999999999999999876433 345555554432 111000 0
Q ss_pred --hHHHHHHHHHHHHHHh-cCCeEEEEeCCCccCC
Q 003859 460 --GEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAP 491 (791)
Q Consensus 460 --g~~~~~l~~lf~~a~~-~~p~VL~IDEiD~L~~ 491 (791)
......+..+...+.. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 0011123333444444 6788999999998863
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00025 Score=76.70 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcC
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.+||+||||||||++|.+++..+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5999999999999999888887543
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.00017 Score=78.28 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=50.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh------cCCceEEEEEech---hhhhhhH--------------------
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASK------AGQKVSFYMRKGA---DVLSKWV-------------------- 459 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~------~~~~~~~~~i~~~---~~~~~~~-------------------- 459 (791)
|+.+...++|+||||+|||+||..+|..+.. .+..+.|+..... .-+..+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 4566777999999999999999999987533 2334555544331 1111100
Q ss_pred --hHHHHHHHHHHHHHHh--cCCeEEEEeCCCccCC
Q 003859 460 --GEAERQLKLLFEEAQR--NQPSIIFFDEIDGLAP 491 (791)
Q Consensus 460 --g~~~~~l~~lf~~a~~--~~p~VL~IDEiD~L~~ 491 (791)
......+..+...+.. ..+.+|+||.+..++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 0111122223344444 5688999999998863
No 192
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.44 E-value=0.0001 Score=79.58 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=39.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH----cCchhHHH--HHHHHHHHHHHhhhhhcCCceEEEEeCchhhcccc
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY----MNWRNFLF--ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQY 770 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~----~~~~~~~l--~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~ 770 (791)
..++|+||||||||++|+.++..+ .-..+..+ ..++... +... ..++|+||||++.+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~----~~~~--~~~~v~~iDE~~~l~~~~ 118 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI----LTSL--ERGDVLFIDEIHRLNKAV 118 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH----HHHC--CTTCEEEEETGGGCCHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH----HHHc--cCCCEEEEcchhhcCHHH
Confidence 379999999999999998888876 21222221 1222222 2211 247899999999887643
No 193
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.42 E-value=6.9e-05 Score=85.30 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=20.1
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
..+||+||||||||++|++++..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 379999999999998887777644
No 194
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.36 E-value=0.00013 Score=79.36 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
.+||+||||||||++|..++..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999998888877653
No 195
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.35 E-value=1.6e-05 Score=84.89 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.5
Q ss_pred CcEEEecCCCCChhHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
..+||+||||||||++|+++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 37999999999999877777664
No 196
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.34 E-value=4.8e-05 Score=81.37 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.1
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
..++||+||||||||+||.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999888887655
No 197
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.31 E-value=0.0024 Score=68.06 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=49.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhh-----hhhhH-------------hHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKWV-------------GEAERQLKLLFEE 472 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~-----~~~~~-------------g~~~~~l~~lf~~ 472 (791)
.++..++|+||+|+||||++..||..+...+..+.++..+.... +..|. +.....+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 45667999999999999999999999977776777766543211 01110 0111122234444
Q ss_pred HHhcCCeEEEEeCCC
Q 003859 473 AQRNQPSIIFFDEID 487 (791)
Q Consensus 473 a~~~~p~VL~IDEiD 487 (791)
+....+.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 555677899999874
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.31 E-value=0.0014 Score=73.06 Aligned_cols=78 Identities=26% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh-----hhh---Hh----------HHHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-----SKW---VG----------EAERQLKLLFEEA 473 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~-----~~~---~g----------~~~~~l~~lf~~a 473 (791)
++..++|+||+|+||||++..||..+...+.++.++..+..... ..+ .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999999999888888888776642111 000 00 1122233444555
Q ss_pred HhcCCeEEEEeCCCcc
Q 003859 474 QRNQPSIIFFDEIDGL 489 (791)
Q Consensus 474 ~~~~p~VL~IDEiD~L 489 (791)
....+.+||||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5556789999988543
No 199
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.29 E-value=0.00032 Score=77.60 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
|+.+..-++|+||||||||+|+..||..+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 56677789999999999999999887544
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.28 E-value=0.00047 Score=67.87 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
.-++++||+|+||||++-.++..+...+..+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3578999999999999988877775555555544
No 201
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.24 E-value=0.0021 Score=63.68 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech-------hhhhhhH-----------------hHHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-------DVLSKWV-----------------GEAERQLKLL 469 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-------~~~~~~~-----------------g~~~~~l~~l 469 (791)
..|++|+++|.||||+|-++|..+...+.++-|+..... .++..+. ..........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999999999888888888865432 2333220 0112233444
Q ss_pred HHHHHh----cCCeEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCc
Q 003859 470 FEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (791)
Q Consensus 470 f~~a~~----~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~ 529 (791)
+..+.. ....+|+|||+-..+.-+ ---...++.++.. .....-||.|+|.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g--------~l~~~ev~~~l~~--Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD--------YLPLEEVISALNA--RPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT--------SSCHHHHHHHHHT--SCTTCEEEEECSS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC--------CCCHHHHHHHHHh--CcCCCEEEEECCC
Confidence 444443 447899999995322110 0112235566653 2334556666665
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.24 E-value=0.0003 Score=70.88 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
|+.+..-+.|+||+|+|||||++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666779999999999999999999865
No 203
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.20 E-value=0.0011 Score=76.08 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=86.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhc--CCceEEEEEechh-hhhhh------------------------HhHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKGAD-VLSKW------------------------VGEAERQ 465 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~i~~~~-~~~~~------------------------~g~~~~~ 465 (791)
..++|+.|.+|+|||++++.|...+... ...+.|+.++... -+..| +.+...+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EMerR 293 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERR 293 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988877533 2357777776532 01111 1111111
Q ss_pred HHHHHHHH-----------H----------------------------hcCCeEEEEeCCCccCCCCCCchhhhhHHHHH
Q 003859 466 LKLLFEEA-----------Q----------------------------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (791)
Q Consensus 466 l~~lf~~a-----------~----------------------------~~~p~VL~IDEiD~L~~~~~~~~~~~~~~v~~ 506 (791)
. .+|... . ...+.||||||++.|+... ...+..
T Consensus 294 ~-~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~-------~~~~~~ 365 (574)
T 2iut_A 294 Y-RLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV-------GKKVEE 365 (574)
T ss_dssp H-HHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT-------CHHHHH
T ss_pred H-HHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh-------hHHHHH
Confidence 1 111110 0 0113589999999886321 122333
Q ss_pred HHHHHHhccCCCCcEEEeccCCchh--hhhhhhcCCCCccccccCCCCCHHHHHHHHH
Q 003859 507 TLLALMDGLDSRGQVVLIGATNRVD--AIDGALRRPGRFDREFNFPLPGCEARAEILD 562 (791)
Q Consensus 507 ~Ll~~l~~~~~~~~vivIattn~~~--~Ld~aL~r~gRf~~~I~~~~Pd~eer~~IL~ 562 (791)
.|..++.. -..-.|.+|++|.+|. .|+..++. -|...|.|...+..+...||.
T Consensus 366 ~L~~Iar~-GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 366 LIARIAQK-ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHH-CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHH-HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 33333332 2345688888888876 78888877 788888899999988887774
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.20 E-value=0.00044 Score=75.49 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+||+||||||||+++.+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999998888765
No 205
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.20 E-value=0.00067 Score=76.44 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=34.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~ 450 (791)
|+.+..-++|.|+||+|||+|+..+|..+.. .+..+.|+...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 5777788999999999999999999998865 35567777654
No 206
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.18 E-value=0.00036 Score=76.06 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=44.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEechhhh--------h-hhHhHHHHHHHHHHHHHHhcCCeEEE
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVL--------S-KWVGEAERQLKLLFEEAQRNQPSIIF 482 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~~~--------~-~~~g~~~~~l~~lf~~a~~~~p~VL~ 482 (791)
...++|.||+|+|||||+++|+..+... +..+..+. +...+. . ..++.....+...+..+....|.||+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 3468999999999999999999988654 22222211 111100 0 00011111233466677778899999
Q ss_pred EeCCC
Q 003859 483 FDEID 487 (791)
Q Consensus 483 IDEiD 487 (791)
|||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99983
No 207
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.17 E-value=0.0014 Score=68.59 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
|+.....++|+||+|+|||||+..++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4456678999999999999999999987653
No 208
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.12 E-value=0.00043 Score=74.69 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
+..+||+||||||||++|..++..+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34699999999999998888887764
No 209
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.10 E-value=0.00021 Score=82.94 Aligned_cols=35 Identities=40% Similarity=0.552 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
..++|+||||||||+++.+++..+...+..+.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 57999999999999999999999887776665543
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.10 E-value=0.0017 Score=69.41 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|+.+..-++|.|+||+|||+||..+|..+...+..+.|+...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 567778899999999999999999998876666566666544
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.08 E-value=0.00023 Score=74.20 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEechhh-------hhh-hHhHHHHHHHHHHHHHHhcCCeEE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADV-------LSK-WVGEAERQLKLLFEEAQRNQPSII 481 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~~-------~~~-~~g~~~~~l~~lf~~a~~~~p~VL 481 (791)
.+...++|+||+|+|||||+++|+..+... ...+.+.......+ +.. .++.....++..+..+....|.||
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 455679999999999999999999987543 22333222111000 000 000000123455566666689999
Q ss_pred EEeCCC
Q 003859 482 FFDEID 487 (791)
Q Consensus 482 ~IDEiD 487 (791)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 212
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.00044 Score=74.82 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+||+||||||||+++++++..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999998888854
No 213
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.05 E-value=0.002 Score=68.00 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEE
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMR 449 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i 449 (791)
++.+..-++|.||||+|||||++.||..+... +..+.++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46777789999999999999999999988654 445655543
No 214
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.04 E-value=0.00057 Score=74.31 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
|+.+..-++|+||+|+|||+|++.++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56677789999999999999999999876
No 215
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.01 E-value=0.0014 Score=74.47 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=47.3
Q ss_pred eEEEEeCCCccCCCCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchh--hhhhhhcCCCCccccccCCCCCHHH
Q 003859 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--AIDGALRRPGRFDREFNFPLPGCEA 556 (791)
Q Consensus 479 ~VL~IDEiD~L~~~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~--~Ld~aL~r~gRf~~~I~~~~Pd~ee 556 (791)
.||+|||+..++.. ....+...|..+.. ....-.+.+|.+|.++. .++..++. .|...|.|...+..+
T Consensus 299 ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar-~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 299 IVVLVDEFADLMMT-------VGKKVEELIARLAQ-KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEEETHHHHHHH-------HHHHHHHHHHHHHH-HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred EEEEEeCHHHHHhh-------hhHHHHHHHHHHHH-HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 38999999877521 11122222222222 22233677778888876 57777776 777788899999998
Q ss_pred HHHHHH
Q 003859 557 RAEILD 562 (791)
Q Consensus 557 r~~IL~ 562 (791)
...|+.
T Consensus 369 sr~ilg 374 (512)
T 2ius_A 369 SRTILD 374 (512)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 888875
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.01 E-value=0.0005 Score=73.70 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
|+.+...++|+||||+|||+||..+|..+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667789999999999999999999764
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.00 E-value=0.0013 Score=63.54 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|+||+||||++++|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999999874
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.99 E-value=0.0096 Score=63.01 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=33.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhh-cCCceEEEEEec
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKG 451 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~~ 451 (791)
.+..++|+||+|+||||++..||..+.. .+..+.++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4567999999999999999999999874 677777776654
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.0012 Score=66.98 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=46.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh-----hhhhhHhHH-----HHHHHHHHHHHHh----cCC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD-----VLSKWVGEA-----ERQLKLLFEEAQR----NQP 478 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~-----~~~~~~g~~-----~~~l~~lf~~a~~----~~p 478 (791)
..-+|++||+|+||||++..++..+...+..+.++...... +.+. .|.. ......++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 34578889999999999999999987777777666322211 1111 1100 0011234444443 347
Q ss_pred eEEEEeCCCcc
Q 003859 479 SIIFFDEIDGL 489 (791)
Q Consensus 479 ~VL~IDEiD~L 489 (791)
.+|+|||+..|
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999765
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=5.4e-05 Score=72.01 Aligned_cols=63 Identities=8% Similarity=-0.002 Sum_probs=37.5
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNWRNFLFILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~l~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
...++|+||+|||||+|+++++..+.......+.....+++. .+....|.+|+|||+..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~lLilDE~~~~~~~ 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL----TDAAFEAEYLAVDQVEKLGNE 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC----CGGGGGCSEEEEESTTCCCSH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH----HHHHhCCCEEEEeCccccChH
Confidence 347999999999999999888876632100000000000000 011235899999999987653
No 221
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.96 E-value=0.0017 Score=72.90 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhh-cCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~ 450 (791)
|+.+..-++|+|+||+|||+||..+|..+.. .+..+.|+...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5777788999999999999999999988765 35567776654
No 222
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.00085 Score=66.32 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+.|.||+|+|||||++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999999885
No 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.94 E-value=0.0057 Score=74.40 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=36.0
Q ss_pred cCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 381 l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
.+|.+..++.|.+.+... ....-|.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999999887531 22457899999999999999999863
No 224
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.94 E-value=0.00018 Score=76.76 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=34.7
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCch--hHHH---------HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccccc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWR--NFLF---------ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQYS 771 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~--~~~l---------~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~~~ 771 (791)
.+||+||||||||+++.+++.. .+.. +..+ ..+.-+.+..++....+ .+ +||||++..+.....
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~-~~-LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ-HR-VIVIDSLKNVIGAAG 199 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH-CS-EEEEECCTTTC----
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh-CC-EEEEecccccccccc
Confidence 4899999999999988887764 1110 0000 01111222222222222 23 999999999865443
No 225
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.0023 Score=65.11 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH-hhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA-SKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l-~~~~~~~~~~~i~ 450 (791)
|+.+..-++|+|+||+|||+||..+|... ...+..+.|+...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 46677789999999999999999887653 3334556665543
No 226
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.87 E-value=0.00023 Score=68.99 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.8
Q ss_pred CCCceEEEEcCCCChHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~lara 432 (791)
..+.-+.|+||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4455689999999999999994
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00054 Score=68.28 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcC
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
..++|||||||||||++|.+++..+.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 337999999999999888887776543
No 228
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.84 E-value=0.00099 Score=67.46 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=34.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..|++.|++||||||++-.+|..+...++.+.++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 46999999999999999999999988888888887764
No 229
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.013 Score=72.99 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAG 441 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~ 441 (791)
..++|++||+|+|||+++-..+......+
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g 227 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNK 227 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 35799999999999998765555443333
No 230
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.75 E-value=0.0012 Score=77.22 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+||+||||||||++|++++..+
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 79999999999998888887754
No 231
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.75 E-value=0.0043 Score=62.08 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
.|+|.||||+||+|.|+.||+.++ +. .++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~--~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FV--HISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CE--EEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----Ce--EEcHHHHHH
Confidence 478999999999999999999884 33 345555553
No 232
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.73 E-value=0.0036 Score=64.01 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
.+||+||+|+|||.++.+++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 59999999999999998888765
No 233
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.71 E-value=0.0044 Score=70.68 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEec
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKG 451 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~ 451 (791)
|+.+..-++|.|+||+|||+||..+|..+... +..+.|+....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 57777789999999999999999999988765 66777776543
No 234
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.71 E-value=0.00042 Score=76.06 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=46.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEechh-------hhhh-hHhHHHHHHHHHHHHHHhcC
Q 003859 407 SYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGAD-------VLSK-WVGEAERQLKLLFEEAQRNQ 477 (791)
Q Consensus 407 ~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~-------~~~~-~~g~~~~~l~~lf~~a~~~~ 477 (791)
.+.+.+...++|+||+|+||||++++|+..+... ...+.++.-.... ++.. .++.....+...+..+....
T Consensus 130 ~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 130 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp HHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred HHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 3334556679999999999999999999988643 2233222211000 0000 00000112234455555568
Q ss_pred CeEEEEeCCC
Q 003859 478 PSIIFFDEID 487 (791)
Q Consensus 478 p~VL~IDEiD 487 (791)
|.+|+|||+-
T Consensus 210 pd~illdE~~ 219 (372)
T 2ewv_A 210 PDVIFVGEMR 219 (372)
T ss_dssp CSEEEESCCC
T ss_pred cCEEEECCCC
Confidence 9999999983
No 235
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.71 E-value=0.0014 Score=68.32 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+...+.|.||+|+|||||++.|+..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455668899999999999999998654
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.70 E-value=0.00083 Score=66.59 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+...|+|+||+||||||++++||..++
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4556899999999999999999999984
No 237
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.67 E-value=0.0073 Score=67.71 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
|+.+..-++|.|+||+|||+||-.+|..+...+..+.|+...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 577777899999999999999999999887666667666543
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.67 E-value=0.0018 Score=62.67 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=15.8
Q ss_pred cEEEecCCCCChhHHHH
Q 003859 705 RLLLCGSEGTGVFNRII 721 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~ 721 (791)
-++|+||+|||||+|++
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38999999999999999
No 239
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.67 E-value=0.0068 Score=62.79 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (791)
+..|+|+|+||+||||+|+.|+..+...++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~ 33 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNI 33 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 456999999999999999999998764443
No 240
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.65 E-value=0.0046 Score=65.20 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
..+..|+|+||||+||||+|+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446779999999999999999999876
No 241
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.63 E-value=0.0017 Score=63.25 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
..|+|+|+|||||||+++.|+..++..+..+.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 4699999999999999999999997555434554
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.63 E-value=0.00094 Score=65.01 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|++||||||+++.||..++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999984
No 243
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.62 E-value=0.0011 Score=64.68 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..+..|+|+|+||+||||+++.|+..++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567799999999999999999999884
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.61 E-value=0.0015 Score=63.71 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
.|+|.|+|||||||+++.|+..++..+..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 489999999999999999999997655555554
No 245
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0018 Score=68.89 Aligned_cols=67 Identities=7% Similarity=-0.074 Sum_probs=38.4
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHcCc--hhHH----------H-HHHHHHHHHHHhhhhhcCCceEEEEeCchhhccc
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFYMNW--RNFL----------F-ILLVFQLFFQILVPRHQRRHWCIYLVKLEEQRHQ 769 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~~~~--~~~~----------l-~~d~~e~~~~~~~~a~~~~P~ivfldeid~~a~~ 769 (791)
.|.+|||||||||||++|.+++..+..+ ..+. . ..++.+++..+-.........||||||++.+-..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 3589999999999998888877643111 0000 1 1122233222212222223579999999987543
No 246
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.60 E-value=0.0034 Score=69.03 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=19.8
Q ss_pred cEEE--ecCCCCChhHHHHHHHHHH
Q 003859 705 RLLL--CGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll--~GPPGtGKT~la~~~~~~~ 727 (791)
.++| +||||||||++++.++..+
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 6888 9999999999998887654
No 247
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.55 E-value=0.0034 Score=63.33 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~ 456 (791)
+..++.|+|.||||+||+|.|+.||..++ + ..++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g-----~--~hIstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH-----F--NHLSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC-----C--EEECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC-----C--ceEcHHHHHH
Confidence 35567789999999999999999999884 3 3445555554
No 248
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.54 E-value=0.0086 Score=71.86 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCCccCCcHHHHHHHHHHHHcccCCh--hHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 377 SFDDIGGLSEYIDALKEMVFFPLLYP--DFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 377 ~~~~l~G~e~~k~~L~~~v~~pl~~~--~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.|.++.-.....+.+...-..|.... .+... +.....++|+||+|+|||+++..++...
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45555555555555555443332111 11111 1234579999999999999877775543
No 249
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.52 E-value=0.0092 Score=58.79 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.4
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARAL 433 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laral 433 (791)
.++++++|+|+|||.++-..
T Consensus 39 ~~~li~~~TGsGKT~~~~~~ 58 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALP 58 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHH
Confidence 57999999999999874433
No 250
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.50 E-value=0.014 Score=62.59 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.++..+.|.||+|+||||+++.||..+...+..+.+...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4567799999999999999999999987776667666544
No 251
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.47 E-value=0.015 Score=62.68 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
|+.+..-++|.|+||+|||+||..+|..+...+..+.|+....
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5677778999999999999999999998877676777776543
No 252
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.46 E-value=0.0018 Score=62.89 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..|+|+|+||+||||+++.|+..++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999999884
No 253
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.42 E-value=0.0041 Score=67.67 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|+|||||++.|+..+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455668899999999999999998654
No 254
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.42 E-value=0.031 Score=63.00 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
+..+..++|.||+|+|||||++.||..+...+..+.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 34566789999999999999999999987655555544
No 255
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.025 Score=57.36 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=19.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~ 436 (791)
...++++||+|||||+++..+.-.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 457999999999999877665433
No 256
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.39 E-value=0.014 Score=66.32 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=33.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.+..|+|+|++|+||||++..||..+...+.++.++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 4567999999999999999999999987777787777643
No 257
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.38 E-value=0.0021 Score=62.75 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~ 436 (791)
.+..|+|+|+|||||||+++.||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999998
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.38 E-value=0.0053 Score=63.26 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..+..|+|+|+||+||||+++.|+..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999874
No 259
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.0032 Score=62.61 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (791)
..+..|+|+|++||||||+++.|+..++..+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 34567999999999999999999999987666553
No 260
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.37 E-value=0.038 Score=58.35 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+..+.|+|++|+||||++..||..+...+..+.++..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 455788899999999999999999998777777766554
No 261
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.37 E-value=0.0042 Score=66.37 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.1
Q ss_pred CcEEEecCCCCChhHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
+.++++||+|||||+++..++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 36999999999999999888765
No 262
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.33 E-value=0.013 Score=58.52 Aligned_cols=53 Identities=21% Similarity=0.120 Sum_probs=31.8
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIA 430 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~la 430 (791)
..+|+++.-.+.+++.|...-... ..+ ..+..+ ....++++++|+|+|||.++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~-~~~~Q~~~i~~~--~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEE-PSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCS-CCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCC-CcHHHHHHHHHH--hcCCCEEEECCCCCcHHHHH
Confidence 456888876677777776542110 011 111111 12357999999999999873
No 263
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.33 E-value=9.8e-05 Score=86.11 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+||+||||||||++|++++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 79999999999998777776654
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.32 E-value=0.0062 Score=60.78 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|+||||+||||+|+.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999884
No 265
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.31 E-value=0.0019 Score=67.00 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=19.7
Q ss_pred CCcEEEecCCCCChhHHHHHHHHH
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
+.+||||||||||||+++.+++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 338999999999999777766664
No 266
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.29 E-value=0.0045 Score=67.76 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 445568899999999999999999765
No 267
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0042 Score=60.56 Aligned_cols=37 Identities=41% Similarity=0.454 Sum_probs=30.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
..+..|+|+|++|+||||+++.|+..+...+..+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3456789999999999999999999997666555554
No 268
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.28 E-value=0.0016 Score=69.75 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
++||+||||||||++|++++..+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 79999999999998888777653
No 269
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.28 E-value=0.0028 Score=61.19 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|.|+|||||||+++.||..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999999985
No 270
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.27 E-value=0.0027 Score=64.88 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455678999999999999999998654
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.27 E-value=0.002 Score=61.85 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..|+|+||+||||||+++.||..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999874
No 272
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.27 E-value=0.0043 Score=61.58 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceE
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (791)
.+.-|+|+|++||||||+++.|+..++..+..+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3567999999999999999999999987766563
No 273
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.26 E-value=0.00021 Score=79.86 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhccCCCCcEEEecc-CCchhhhhhhhcCCCCccccccCCCCCHH-HHHHHHH
Q 003859 500 IHNSIVSTLLALMDGLDSRGQVVLIGA-TNRVDAIDGALRRPGRFDREFNFPLPGCE-ARAEILD 562 (791)
Q Consensus 500 ~~~~v~~~Ll~~l~~~~~~~~vivIat-tn~~~~Ld~aL~r~gRf~~~I~~~~Pd~e-er~~IL~ 562 (791)
...++++.|+..|+++.....+ +++ ||+++.|+++|++++||+..|+|++|+.. .+.+||.
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 3467888899999988665554 454 99999999999999999999999999988 7777763
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.25 E-value=0.0043 Score=61.42 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (791)
.++..|.|.||+||||||++++||..+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~ 54 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGK 54 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 45567899999999999999999999974443
No 275
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.22 E-value=0.0038 Score=67.77 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 445568899999999999999999765
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.21 E-value=0.0022 Score=61.25 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|.|++||||||+++.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999884
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.19 E-value=0.03 Score=59.88 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.++..++|+|++|+||||++..||..+...+..+.++..+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45667999999999999999999999987777777765543
No 278
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.18 E-value=0.0025 Score=62.01 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|+|+|||||||+++.||..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999999985
No 279
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.17 E-value=0.01 Score=58.67 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l 437 (791)
.++||++|+|+|||+++-.++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877654
No 280
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.17 E-value=0.016 Score=70.28 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
.....++|+||.|+||||+.+.++..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 44567999999999999999998754
No 281
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.15 E-value=0.032 Score=62.23 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=51.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc-CCceEEEEEechhhh--hh---hH---h----------HHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVL--SK---WV---G----------EAERQLKLLFEE 472 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~~~--~~---~~---g----------~~~~~l~~lf~~ 472 (791)
++..|+|+|++|+||||++-.||..+... +.++.++..+..... .. +. + .....+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999888 888888777642110 00 00 0 112233556666
Q ss_pred HHhcCCeEEEEeCCC
Q 003859 473 AQRNQPSIIFFDEID 487 (791)
Q Consensus 473 a~~~~p~VL~IDEiD 487 (791)
+......+||||=.-
T Consensus 179 ~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEECCC
Confidence 665556799999753
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.12 E-value=0.054 Score=60.07 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=33.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
++..++|+|++|+||||++..||..+...+..+.++..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 4567889999999999999999999987777777776654
No 283
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.12 E-value=0.0028 Score=60.67 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+|+|.|++||||||+++.||..++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999985
No 284
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.11 E-value=0.0054 Score=63.52 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||.|+|||||++.|+..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999998764
No 285
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.11 E-value=0.0089 Score=62.44 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555678999999999999999998664
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.07 E-value=0.0029 Score=61.94 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..|+|.|+|||||||+++.||..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999999884
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.07 E-value=0.0036 Score=65.61 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+..-+.|.||+|+|||||++.|+..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 445568899999999999999998654
No 288
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.07 E-value=0.012 Score=68.71 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
..++|+|+||||||+++..+...+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999998887753
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.07 E-value=0.0099 Score=63.52 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=56.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh-HhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~-~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~ 492 (791)
..|+|+||+|||||+|++.||..++ ..++.++...+.... ++....... .....| -.|||.++-..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~qvy~~~~igTakp~~~-----e~~gvp-h~lid~~~~~~-- 72 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-----CELISVDSALIYRGMDIGTAKPSRE-----LLARYP-HRLIDIRDPAE-- 72 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTTTTBTTCCTTTTCCCHH-----HHHHSC-EETSSCBCTTS--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccchhhhcCCCcccCCCCHH-----HHcCCC-EEEeeccCccc--
Confidence 4799999999999999999999873 666666544322110 111000000 012234 35666655332
Q ss_pred CCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCch
Q 003859 493 RSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (791)
Q Consensus 493 ~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~ 530 (791)
......+.......+..++. .....|++-++.-..
T Consensus 73 -~~~~~~F~~~a~~~i~~i~~--~g~~~IlvGGt~~y~ 107 (323)
T 3crm_A 73 -SYSAAEFRADALAAMAKATA--RGRIPLLVGGTMLYY 107 (323)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHH
T ss_pred -ccCHHHHHHHHHHHHHHHHH--cCCeEEEECCchhhH
Confidence 12233444444444444444 356788999886443
No 290
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.05 E-value=0.006 Score=64.89 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4566679999999999999999998754
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0034 Score=61.15 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|+|||||||+|+.|+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999884
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.02 E-value=0.0032 Score=60.62 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~ 435 (791)
..|+|.|+||+||||+|+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.00 E-value=0.0031 Score=61.24 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|+|||||||+++.||..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999884
No 294
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.00 E-value=0.0071 Score=65.62 Aligned_cols=27 Identities=41% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999765
No 295
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.99 E-value=0.0074 Score=65.60 Aligned_cols=27 Identities=37% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 445568899999999999999999765
No 296
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.98 E-value=0.0055 Score=59.55 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|+|||||||+++.|+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999884
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.005 Score=61.78 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..|+|.|+||+||||+++.||..++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999999884
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.0067 Score=59.96 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAG 441 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~ 441 (791)
+.-|+|.|+|||||||+++.|+..++..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 34689999999999999999999987544
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.97 E-value=0.0035 Score=61.19 Aligned_cols=27 Identities=44% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
+.++..++|.||+|+|||||++.|+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 355667999999999999999999876
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.96 E-value=0.011 Score=61.59 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.....+.|.||+|+|||||++.|+..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3455668899999999999999998765
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.96 E-value=0.0044 Score=61.25 Aligned_cols=27 Identities=44% Similarity=0.534 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..|+|+|+|||||||+|+.|+..++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999884
No 302
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.95 E-value=0.012 Score=67.34 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=52.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech--hhhhh----------hH--------------hHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSK----------WV--------------GEA 462 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~~~~~----------~~--------------g~~ 462 (791)
++.+...++|.||+|+|||+|++.++..+...+..+.++..... .+... +. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45667789999999999999999999887655544444432211 11100 00 012
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCccC
Q 003859 463 ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (791)
Q Consensus 463 ~~~l~~lf~~a~~~~p~VL~IDEiD~L~ 490 (791)
....+.++..+....|.+|+||=+-.|.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 3455566677777889999999554443
No 303
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.94 E-value=0.004 Score=59.62 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|+|++||||||+++.|+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999885
No 304
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.93 E-value=0.0071 Score=65.84 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 445568899999999999999999765
No 305
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.93 E-value=0.0084 Score=64.74 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 382 ~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
+.++...+.+...+...+.. ....+|+|+|++|+||||++++||..++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45566666666665442211 12346999999999999999999999863
No 306
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.93 E-value=0.021 Score=57.87 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHH
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~lara 432 (791)
+..+|+++.-...+++.|...-.. ...+ ..+..+ .....+|+++|+|+|||.++-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~ai~~i--~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFE-KPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCC-SCCHHHHHHHHHH--HTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHH
Confidence 345688886666666666553211 0011 111111 1235799999999999986443
No 307
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.92 E-value=0.0043 Score=60.81 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|+|||||||+++.|+..++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999884
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.92 E-value=0.0049 Score=62.46 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+...+.|.||+|+|||||++.|+..+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999998654
No 309
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.92 E-value=0.0044 Score=61.28 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|++|+||||+++.|+..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999884
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.89 E-value=0.0043 Score=64.05 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.++|+||+||||||||+.||..++ ..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-----~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-----WPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-----CCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-----CeEEeccH
Confidence 488999999999999999999884 45555443
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.87 E-value=0.0035 Score=63.36 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..+..|+|+|+|||||||+++.||..++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999999874
No 312
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.87 E-value=0.0014 Score=70.57 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh-----hh---hHhHHHHHHHHHHHHHHhcCCeEEEE
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL-----SK---WVGEAERQLKLLFEEAQRNQPSIIFF 483 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~-----~~---~~g~~~~~l~~lf~~a~~~~p~VL~I 483 (791)
+...++|.||+|+|||||+++|+..+......+ .+.+...+ .. ++.......+..+..+....|.+|+|
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i---~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII---SIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE---EEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE---EECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 345799999999999999999998764321112 22221100 00 11001223445566666778999999
Q ss_pred eCCC
Q 003859 484 DEID 487 (791)
Q Consensus 484 DEiD 487 (791)
||.-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9985
No 313
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.86 E-value=0.026 Score=57.02 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhc---CCCCCceEEEEcCCCChHHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASY---HITPPRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~---g~~~~~~vLL~GppGtGKT~lara 432 (791)
..+|+++.-...+++.|...-. ..+.-++.. .+....++++++|+|+|||+++-.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~---~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQY---RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTC---CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHH
Confidence 4568888766777777765311 111111110 011236799999999999986543
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.86 E-value=0.0048 Score=63.25 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..+..|+|+||||+||||+|+.|+..++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999999874
No 315
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.85 E-value=0.0044 Score=62.30 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..|+|.||||+||||+++.||..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999884
No 316
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.83 E-value=0.024 Score=60.63 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=35.5
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
..+|+++.-.+.+++.|...-... ..+ ..+..+ +....++++.+|+|+|||+++-..+..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~-~~~~Q~~~i~~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEK-PTDIQMKVIPLF-LNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCS-CCHHHHHHHHHH-HHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCCCC-CCHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 346777766666676666532111 111 111111 1223689999999999999876665554
No 317
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.83 E-value=0.025 Score=55.66 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.6
Q ss_pred ceEEEEcCCCChHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIAR 431 (791)
Q Consensus 414 ~~vLL~GppGtGKT~lar 431 (791)
.++++++|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.81 E-value=0.01 Score=65.84 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=53.3
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhh
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~ 455 (791)
.++++|.-....+..|..++. .+...++|+||+|+||||++++|+..+.....++.+..-......
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 455666544444444544421 233458999999999999999999988544334444332211000
Q ss_pred h-----hhHhHHHHHHHHHHHHHHhcCCeEEEEeCCC
Q 003859 456 S-----KWVGEAERQLKLLFEEAQRNQPSIIFFDEID 487 (791)
Q Consensus 456 ~-----~~~g~~~~~l~~lf~~a~~~~p~VL~IDEiD 487 (791)
. .......-.....+..+....|.++++.|+-
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000000112233334445678899999974
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.80 E-value=0.0055 Score=60.63 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
++..++|.||+|+||||+++.|+..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 456799999999999999999999883
No 320
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.80 E-value=0.053 Score=53.91 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=34.7
Q ss_pred CCCCCccCCcHHHHHHHHHHHHc-ccCC-hhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFF-PLLY-PDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~-pl~~-~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
..+|.++.-.+.+++.|...-.. |-.+ ...+..+ ....++++.+|+|+|||.++-..+...
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 34688887667777777653111 1000 0111111 123579999999999998766555444
No 321
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.79 E-value=0.0073 Score=61.29 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|.|+|||||||+++.||..++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999984
No 322
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.79 E-value=0.011 Score=64.10 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 445568899999999999999999764
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.76 E-value=0.073 Score=56.20 Aligned_cols=38 Identities=39% Similarity=0.441 Sum_probs=32.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
+..++|.|++|+||||++..||..+...+..+.++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 56788899999999999999999998777777777665
No 324
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.76 E-value=0.007 Score=66.18 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.....+.|.||+|||||||++.||..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 345568899999999999999999765
No 325
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.76 E-value=0.0053 Score=58.43 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
.|+|+|||||||||+++.| ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999999 655
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.76 E-value=0.0056 Score=58.90 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..++|+||+|+||||+++.|+..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45689999999999999999999874
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.73 E-value=0.031 Score=60.56 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=32.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
....|.|+|+||+|||||+..|+..+...+.++.++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 345789999999999999999999987777777777665
No 328
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.73 E-value=0.0087 Score=59.68 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh-hcCCceEE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSF 446 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~ 446 (791)
..+..|+|.|++|+||||+++.|+..+. ..+..+.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~ 59 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYR 59 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEE
Confidence 4556789999999999999999999986 44433333
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.72 E-value=0.005 Score=61.10 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..+.-|+|+||||+||||+++.|+..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45667899999999999999999998773
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.71 E-value=0.0056 Score=62.66 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..++|.||+|+||||+++.|+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999999885
No 331
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.70 E-value=0.0098 Score=61.46 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+...+.|.||+|+|||||++.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999999765
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.69 E-value=0.02 Score=56.63 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
..+.-+.|.|++|+||||+++.|+..+...+..+.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 4455688999999999999999999886545445444
No 333
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.68 E-value=0.0064 Score=60.98 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..|+|.|+|||||||+++.||..++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999984
No 334
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.67 E-value=0.0061 Score=66.16 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999764
No 335
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.67 E-value=0.0076 Score=62.15 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+...+.|.||+|+|||||++.|+..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999998765
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.67 E-value=0.0036 Score=60.54 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|+|||||||+++.|+..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999999875
No 337
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.66 E-value=0.036 Score=67.52 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~ 436 (791)
...++|+||.|+||||+++.+|..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999543
No 338
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.64 E-value=0.019 Score=63.99 Aligned_cols=39 Identities=33% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+..|+|+|++|+||||++..||..+...+..+.++..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 356799999999999999999999997777777766554
No 339
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.64 E-value=0.0057 Score=66.81 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....-+.|.||+|||||||++.||..+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 445568899999999999999999765
No 340
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.62 E-value=0.024 Score=58.06 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcC---CCCCceEEEEcCCCChHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIAR 431 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lar 431 (791)
..+|.++.-...+++.|...-. ..+.-++... +....++|+.+|+|+|||+.+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGW---TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 4567787666666666654321 1111111100 1123679999999999998644
No 341
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.60 E-value=0.032 Score=63.88 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHH--HHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARAL--ACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laral--A~~l 437 (791)
+.+...++|.||+|||||||++.+ +..+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456678999999999999999994 4444
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.60 E-value=0.0099 Score=58.08 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=24.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCce
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKV 444 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (791)
|.|.|++||||||+++.|+..+...+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 78999999999999999999986555434
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.60 E-value=0.0057 Score=60.37 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|+|++||||||+++.|+..++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999998873
No 344
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.55 E-value=0.018 Score=61.03 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
+.++..+.|.||+|+||||+++.||..+......+.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34566789999999999999999999987655555544
No 345
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.55 E-value=0.012 Score=56.85 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
.+..|+|+|++|+||||+++.|+..+...+ ..++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCC--CcEEEEC
Confidence 345688999999999999999999885433 3344444
No 346
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.54 E-value=0.01 Score=59.03 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.++..+.|.||+|+|||||++.|+..+...+..+.++.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 44567889999999999999999999864333355555544
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.54 E-value=0.011 Score=57.54 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcC
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAG 441 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~ 441 (791)
.|+|+|++||||||+++.|+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 378999999999999999999985444
No 348
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.50 E-value=0.0079 Score=59.40 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=21.2
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHH
Q 003859 703 RPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 703 ~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
...|+|+||||||||++++.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3369999999999999998888754
No 349
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.50 E-value=0.0084 Score=58.25 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l 437 (791)
..-+.|.||+|+|||||++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999875
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.44 E-value=0.0082 Score=57.15 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|+|++|+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999885
No 351
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.44 E-value=0.0057 Score=61.10 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|+||||+||||+|+.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998873
No 352
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.43 E-value=0.012 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..|.|.||+||||||+++.|+..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999884
No 353
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.43 E-value=0.02 Score=62.22 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
+.++..++|.||+|+||||+++.||..+......+.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 34566799999999999999999999987655555543
No 354
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.42 E-value=0.0086 Score=59.03 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.++..+.|+||+|+||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678999999999999999999876
No 355
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.41 E-value=0.0087 Score=58.04 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.7
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+.|+|+||||||||++++.++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999888887754
No 356
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.41 E-value=0.018 Score=55.93 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=32.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..-++|.|++|+|||||++.|+..+...+..+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4568999999999999999999988766666666665543
No 357
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.38 E-value=0.0075 Score=59.20 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 488999999999999999999985
No 358
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.37 E-value=0.013 Score=62.85 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+..|+|.||+|||||+|+..||+.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35699999999999999999999874
No 359
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.37 E-value=0.027 Score=57.16 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+-|.||||+||||+|+.|+..++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999884
No 360
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.34 E-value=0.056 Score=54.16 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.4
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~lara 432 (791)
..++++.+|+|+|||.++-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 46799999999999986543
No 361
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.33 E-value=0.0098 Score=63.57 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+.++++||+|||||+++..++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999998887753
No 362
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.33 E-value=0.051 Score=54.71 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=31.5
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcC---CCCCceEEEEcCCCChHHHHHH
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIAR 431 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lar 431 (791)
+..+|+++.-...+++.|...- ...+.-++... +....++++.+|+|+|||..+-
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 4567888866677777775531 11111111100 1124679999999999998643
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.32 E-value=0.0077 Score=59.27 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+..|+|.|++||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999887
No 364
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.31 E-value=0.0089 Score=56.91 Aligned_cols=23 Identities=9% Similarity=-0.174 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+||||||||++++.++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999998888764
No 365
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.29 E-value=0.013 Score=59.67 Aligned_cols=27 Identities=41% Similarity=0.521 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+..|.|.||+||||||+++.||..++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999984
No 366
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.28 E-value=0.04 Score=58.22 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCCh-----hHhhhcCCCCCceEEEEcCCCChHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYP-----DFFASYHITPPRGVLLCGPPGTGKTLIA 430 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~-----~~~~~~g~~~~~~vLL~GppGtGKT~la 430 (791)
..+|.++.-...+++.|...- ...+ ..+..+-..++.++|+++|+|+|||+..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456777766666666665421 1111 1111111123578999999999999864
No 367
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.27 E-value=0.062 Score=54.51 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCChhHhhhcC---CCCCceEEEEcCCCChHHHHHHH
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lara 432 (791)
+-.+|.++.-...+++.|...- ...+.-++... +....++++.+|+|+|||+++-.
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQN---FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTT---CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHH
Confidence 3456677655555555554421 11111111100 11235799999999999987543
No 368
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.27 E-value=0.054 Score=58.98 Aligned_cols=60 Identities=22% Similarity=0.157 Sum_probs=33.5
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
...+|+++.-...+++.|...-.. -..+ ..+..+ ....++++.+|+|+|||+++-..+..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i--~~~~~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFE-KPSPIQEEAIPVA--ITGRDILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCC-SCCHHHHHHHHHH--HHTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHH--hcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 345788887667777776652111 0011 111111 12356999999999999876554443
No 369
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.26 E-value=0.011 Score=57.57 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||+|||++++.++..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999998888754
No 370
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.23 E-value=0.013 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.5
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
+.|+|+|+||||||++++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 369999999999998888887654
No 371
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.22 E-value=0.035 Score=60.50 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
.....++|.||+|||||+|++.||+.+......+.++
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I 208 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 208 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE
Confidence 4556799999999999999999999886654444433
No 372
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.20 E-value=0.01 Score=58.70 Aligned_cols=27 Identities=41% Similarity=0.677 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
++..+.|.||+|+|||||++.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345689999999999999999998763
No 373
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.19 E-value=0.012 Score=59.26 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCCCcEEEecCCCCChhHHHHHHHHHH
Q 003859 699 PLVYRPRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 699 ~l~~~~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.++.++-|+|.||||+||++.++.++..|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33444468899999999999988888876
No 374
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.18 E-value=0.021 Score=55.12 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=31.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
..+.|.|++|+|||||+..|+..+...+..+..+....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 46889999999999999999999987777777666544
No 375
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.17 E-value=0.0095 Score=57.19 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=19.2
Q ss_pred cEEEecCCCCChhHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQ 725 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~ 725 (791)
-|+|+||||+|||++++.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999988887
No 376
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.16 E-value=0.0091 Score=57.41 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||+|||++++.++..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999998888754
No 377
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.14 E-value=0.012 Score=57.80 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344568899999999999999999875
No 378
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.13 E-value=0.012 Score=58.66 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
++.-++|+||+|+|||||++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456689999999999999999998763
No 379
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.12 E-value=0.056 Score=53.81 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=16.4
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARAL 433 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laral 433 (791)
..+++++|+|+|||..+-..
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~ 61 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLP 61 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHH
Confidence 57999999999999864443
No 380
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.11 E-value=0.057 Score=63.41 Aligned_cols=48 Identities=29% Similarity=0.276 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHcccCChhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceE
Q 003859 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (791)
Q Consensus 383 G~e~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (791)
-.+.+++.+..++.. ..-.||+||||||||+++-.+...+...+..+-
T Consensus 190 LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~IL 237 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVL 237 (646)
T ss_dssp CCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 357788888776643 124799999999999877666666655554443
No 381
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.11 E-value=0.066 Score=57.62 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.....+.|.||||+|||||+++|+..+......+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 44556889999999999999999988865555676666554
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.10 E-value=0.011 Score=59.07 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999884
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.07 E-value=0.024 Score=55.88 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..|.|+|++||||||+++.|+..++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4588999999999999999999874
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.03 E-value=0.011 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999884
No 385
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.02 E-value=0.012 Score=57.20 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=20.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
-|+|+|+||||||++++.++..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999998888653
No 386
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.01 E-value=0.048 Score=57.73 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=64.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh-HhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCC
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~-~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~ 491 (791)
+.-|+|+||+|+|||+||..||..++ ..++..+...+.... ++...-... + ...-| --|||.++-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~qvY~~~~igTakp~~~----E-~~~v~-hhlid~~~~--- 75 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-----VELISVDSALIYKGMDIGTAKPNAE----E-LLAAP-HRLLDIRDP--- 75 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCTTTTBTTCCTTTTCCCHH----H-HHHSC-EETSSCBCT---
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-----CcEEecccccccccccccCCCCCHH----H-HcCCC-EEEeccCCc---
Confidence 45688999999999999999999873 556555544332110 111000000 0 01122 344554431
Q ss_pred CCCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhhhhhhhcCCCCccccccCCCCCHHHHHHH
Q 003859 492 VRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEI 560 (791)
Q Consensus 492 ~~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~~~Pd~eer~~I 560 (791)
...-....+.......+-.++. ...-.|+|=+|.-....|-.. ...+|..+.+-|..+
T Consensus 76 ~e~~s~~~f~~~a~~~i~~i~~--~g~~pilVGGTglYi~all~g---------l~~~p~~~~~~R~~l 133 (316)
T 3foz_A 76 SQAYSAADFRRDALAEMADITA--AGRIPLLVGGTMLYFKALLEG---------LSPLPSADPEVRARI 133 (316)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHSC---------CCCCCCCCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHHHHcC---------cCCCCCCCHHHHHHH
Confidence 1222334444545455555555 456689999987554333211 123565566655544
No 387
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.00 E-value=0.032 Score=60.96 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCChhHhhhc---CCCCCceEEEEcCCCChHHHHHHHHH
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASY---HITPPRGVLLCGPPGTGKTLIARALA 434 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~~~~~~~---g~~~~~~vLL~GppGtGKT~laralA 434 (791)
.+|+++.-...+++.|...- ...+.-++.. .+....++++.+|+|+|||+++-..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHH
Confidence 45667666666666665521 1111111110 01124569999999999998754443
No 388
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.00 E-value=0.011 Score=56.44 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-++|+||||||||++++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999888887753
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.99 E-value=0.013 Score=58.69 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
|+|.||||+||++.++.++..|
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999998888876
No 390
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.97 E-value=0.021 Score=57.15 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
-.+++||.|+|||+.+-.++..+...+.++.++.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3568999999999999999988877777776654
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.96 E-value=0.007 Score=60.08 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcC
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAG 441 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~ 441 (791)
-|.|.|++|+||||+++.|+..+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g 28 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 378999999999999999999986543
No 392
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.96 E-value=0.013 Score=56.82 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHc
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYM 728 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~ 728 (791)
-|+|+||||||||++++.++..+-
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999988887653
No 393
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.93 E-value=0.012 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
.++|.||+|+||||+++.|+..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999998743
No 394
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.92 E-value=0.097 Score=62.80 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l 437 (791)
....++|+||.|+||||+.+.|+...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34568999999999999999998764
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.89 E-value=0.019 Score=59.12 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
...|+|.|++|+||||+++.||..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999985
No 396
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.88 E-value=0.097 Score=53.00 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIAR 431 (791)
Q Consensus 414 ~~vLL~GppGtGKT~lar 431 (791)
.++++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 397
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.88 E-value=0.11 Score=64.13 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~ 435 (791)
...++|+||.|+||||+++.|+-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999943
No 398
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.87 E-value=0.09 Score=56.75 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~laralA~ 435 (791)
.+|+++.-...+++.|...-.. -..+ ..+..+--..+.++|+++|+|+|||+++-..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~-~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQ-KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4566665556666666552111 0011 111111112347899999999999987654443
No 399
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.87 E-value=0.068 Score=54.16 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhc----CCceEEE
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFY 447 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~ 447 (791)
+.-|.|.|++|+||||+++.|+..+... +..+.++
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 4458889999999999999999999766 6555443
No 400
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.87 E-value=0.089 Score=57.50 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCCCCccCCcHHHHHHHHHHHHc-ccCC-hhHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFF-PLLY-PDFFASYHITPPRGVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~-pl~~-~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~ 435 (791)
..+|+++.-.+.+++.|...-.. |..+ ...+..+ ....++|+.+|+|+|||+++-..+.
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHHHHH
Confidence 45688887667777777653211 1000 0111111 1235799999999999976654443
No 401
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.86 E-value=0.011 Score=58.19 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
.|.|+|++||||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999998 6
No 402
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.86 E-value=0.014 Score=55.40 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=17.4
Q ss_pred cEEEecCCCCChhHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILG 723 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~ 723 (791)
-|+|+||||||||++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999998888
No 403
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.85 E-value=0.015 Score=55.45 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||.|+|||||++.|+..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4555668999999999999999999987
No 404
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.84 E-value=0.016 Score=56.36 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=21.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcC
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMN 729 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~ 729 (791)
.|+|+|+||||||++++.++..+++
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5999999999999988888877334
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.83 E-value=0.055 Score=57.37 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=56.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhh-HhHHHHHHHHHHHHHHhcCCeEEEEeCCCccCCC
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-VGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPV 492 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~-~g~~~~~l~~lf~~a~~~~p~VL~IDEiD~L~~~ 492 (791)
.-|+|.||+|||||+|+..||..++ ..++..+...+.... ++...-.. .-...-| --|||.++- .
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~QvYr~~~igTakp~~-----~E~~gvp-hhlid~~~~---~ 69 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSMQVYRGMDIGTAKITA-----EEMDGVP-HHLIDIKDP---S 69 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGGGGBTTCCTTTTCCCH-----HHHTTCC-EESSSCBCT---T
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcccceeeeeecCCCCCH-----HHHcCCC-EEEeccCCh---h
Confidence 4588999999999999999998873 555555444332211 11100000 0111223 345554431 1
Q ss_pred CCCchhhhhHHHHHHHHHHHhccCCCCcEEEeccCCchhh
Q 003859 493 RSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (791)
Q Consensus 493 ~~~~~~~~~~~v~~~Ll~~l~~~~~~~~vivIattn~~~~ 532 (791)
..-....+.......+-.++. .....|+|=+|.-....
T Consensus 70 e~~s~~~F~~~a~~~i~~i~~--~gk~pIlVGGTglYi~a 107 (322)
T 3exa_A 70 ESFSVADFQDLATPLITEIHE--RGRLPFLVGGTGLYVNA 107 (322)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH--TTCEEEEESCCHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHh--CCCcEEEEcCcHHHHHH
Confidence 222334445555555555555 45678899988755443
No 406
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.83 E-value=0.0034 Score=68.28 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=40.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCc--------hhH-HHHH----------HH---HHHHHHHhhhhhcCCceEEEEeC
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNW--------RNF-LFIL----------LV---FQLFFQILVPRHQRRHWCIYLVK 762 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~--------~~~-~l~~----------d~---~e~~~~~~~~a~~~~P~ivflde 762 (791)
-++++||+|||||+++++++..+... ..+ .+.. .+ ...|...+.++-+..|-+|+|||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 38999999999999999887754211 000 0000 00 02355677888889999999999
Q ss_pred ch
Q 003859 763 LE 764 (791)
Q Consensus 763 id 764 (791)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 407
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.025 Score=64.90 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.....+.|.||.|+|||||+++|+..+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999765
No 408
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.79 E-value=0.015 Score=55.85 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.++|+||||||||++++.++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999998888754
No 409
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.78 E-value=0.013 Score=57.19 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.78 E-value=0.029 Score=56.93 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCce
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (791)
.+.-|+|.||+|+||||+++.|+..+.. +..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 4456889999999999999999999975 5444
No 411
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.75 E-value=0.12 Score=57.12 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
++||.+|+|+|||+.+-+++..+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999888887665
No 412
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.74 E-value=0.037 Score=60.74 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.-|+|.||+|+|||+|+..||..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4588999999999999999999984
No 413
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.73 E-value=0.088 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
..||++|+|+|||.++-+++..+.
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHH
Confidence 468899999999999987777653
No 414
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.72 E-value=0.04 Score=56.89 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARAL 433 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laral 433 (791)
.++|+++|+|+|||.++-..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~ 111 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIP 111 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHH
Confidence 46999999999999875443
No 415
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.71 E-value=0.018 Score=57.10 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
++..+.|.||+|+|||||++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999874
No 416
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.71 E-value=0.062 Score=58.16 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=32.1
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHH
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARA 432 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~lara 432 (791)
+..+|+++.-...+.+.|...-.. -..+ ..+..+ ....++|+.+|+|+|||+++-.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i--~~~~~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFE-EPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCC-SCCHHHHHHHHHH--HHTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHcCCC-CCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHH
Confidence 345688886666677766653211 0011 111111 1135699999999999987443
No 417
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.02 Score=56.72 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
.+.-++|.||+|+|||||+++|+..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999998753
No 418
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.71 E-value=0.017 Score=56.72 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (791)
-|+|+||+|+|||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998775
No 419
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.67 E-value=0.073 Score=61.68 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556679999999999999999998765
No 420
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.67 E-value=0.067 Score=59.86 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
...++|+||+|+|||+|+..|+.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 346999999999999999999887654
No 421
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.67 E-value=0.019 Score=55.58 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999888887753
No 422
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.66 E-value=0.017 Score=55.88 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999988888654
No 423
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.65 E-value=0.017 Score=56.94 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||+|||++++.++..+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999998888764
No 424
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.60 E-value=0.018 Score=56.01 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.+.|+||+|||||+|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988765
No 425
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.53 E-value=0.019 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999888888764
No 426
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.52 E-value=0.019 Score=57.63 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445668999999999999999999876
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.50 E-value=0.028 Score=59.15 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+||||+|||++++.++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999988765
No 428
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.48 E-value=0.02 Score=55.57 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999888887654
No 429
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.48 E-value=0.096 Score=56.37 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (791)
.....+.|.|+||+|||||+..|+..+...+..+.++..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 34556889999999999999999998876666666665543
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.48 E-value=0.02 Score=57.00 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
|+|+||||+|||++++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998887765
No 431
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.47 E-value=0.13 Score=61.04 Aligned_cols=58 Identities=28% Similarity=0.340 Sum_probs=32.7
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARALA 434 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~laralA 434 (791)
..+|+++.-...+.+.+... -..-.++ +.+.. .+....++|++||+|+|||+++-..+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~-g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR-GIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT-SCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC-CCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHH
Confidence 45677776445555544431 1101111 22222 13446789999999999999885443
No 432
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.47 E-value=0.024 Score=60.15 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+.+...+.|+||+|+|||||++.|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45677789999999999999999999987
No 433
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.46 E-value=0.019 Score=59.09 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
++|+||||||||++++.++..+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 7899999999999999888754
No 434
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.43 E-value=0.021 Score=56.37 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.+++.+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988864
No 435
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.40 E-value=0.037 Score=58.67 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
.+..+.|.||+||||||+++.||..+...+..+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567889999999999999999999876555555543
No 436
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.40 E-value=0.018 Score=57.32 Aligned_cols=22 Identities=27% Similarity=0.242 Sum_probs=19.3
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
|+|+||||+|||++++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999888887754
No 437
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.39 E-value=0.048 Score=57.44 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
..+.-|.|.||+|+|||||++.|+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44567889999999999999999999864
No 438
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.39 E-value=0.021 Score=55.68 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999888887754
No 439
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.38 E-value=0.02 Score=58.86 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
.+..|.|.|++||||||+|+.|+..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4457899999999999999999998864
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.37 E-value=0.022 Score=56.11 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHh
Q 003859 415 GVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (791)
.|.|.|++|+||||+++.||..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999999885
No 441
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.37 E-value=0.014 Score=63.25 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-++|+||||||||+++..++...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999988877643
No 442
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.35 E-value=0.02 Score=55.60 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.7
Q ss_pred cEEEecCCCCChhHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
-++|+||||+|||++++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999988775
No 443
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.34 E-value=0.021 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.+...+.|.||+|+|||||+++|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455678899999999999999999876
No 444
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.34 E-value=0.027 Score=56.23 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~ 435 (791)
+..|.|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999987
No 445
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.34 E-value=0.025 Score=56.58 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999998888764
No 446
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.34 E-value=0.022 Score=55.70 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999888888764
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.33 E-value=0.036 Score=61.46 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
..+.-|+|+|+||+||||+|+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 445679999999999999999999876
No 448
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.33 E-value=0.022 Score=58.59 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
...|.|.||+||||||+++.||..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35688999999999999999999885
No 449
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.31 E-value=0.023 Score=56.09 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-++|+||+|||||++++.++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999888764
No 450
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.30 E-value=0.057 Score=54.13 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEE
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (791)
+.-|.|.|++|+||||+++.|+..+...+..+.++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 34578899999999999999999998777666443
No 451
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.30 E-value=0.024 Score=54.10 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999888887753
No 452
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.28 E-value=0.024 Score=54.36 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.9
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-++|+||||+|||++++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 48999999999999998887653
No 453
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.27 E-value=0.026 Score=56.53 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+||||||||++++.++..+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999998888765
No 454
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.27 E-value=0.18 Score=60.19 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHH
Q 003859 413 PRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l 437 (791)
...++|+||.|+||||+++.|+...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4578999999999999999999764
No 455
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.27 E-value=0.026 Score=57.12 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.|+|+|+||||||++++.++..+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999888888765
No 456
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.25 E-value=0.023 Score=54.99 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999888887754
No 457
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.25 E-value=0.021 Score=57.48 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.5
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 003859 704 PRLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 704 ~g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.-|+|+||||||||++++.++..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999888887654
No 458
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.25 E-value=0.024 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~ 436 (791)
.+..|.|+|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3457999999999999999999986
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.23 E-value=0.033 Score=63.68 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
.+..|+|+|.||+||||+++.||..++..+..+.++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 3457899999999999999999999976665554443
No 460
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.23 E-value=0.024 Score=55.84 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-+.|+||+|||||++++.++..+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999888765
No 461
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.22 E-value=0.021 Score=60.26 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=24.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
.-|.|.||+|+||||+|+.|+..++..+..+.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 45889999999999999999998875544455544
No 462
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.21 E-value=0.17 Score=56.76 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCCCCccCCcHHHHHHHHHHHHcccCCh-----hHhhhcCCCCCceEEEEcCCCChHHHHH
Q 003859 375 SVSFDDIGGLSEYIDALKEMVFFPLLYP-----DFFASYHITPPRGVLLCGPPGTGKTLIA 430 (791)
Q Consensus 375 ~~~~~~l~G~e~~k~~L~~~v~~pl~~~-----~~~~~~g~~~~~~vLL~GppGtGKT~la 430 (791)
..+|.++.-...+++.|...- ...+ ..+..+-...+.++|++||+|+|||.++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 345666666666666665421 1111 1111111123578999999999999874
No 463
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.021 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.142 Sum_probs=20.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-+.|+||+|+|||+|++.++..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999988764
No 464
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.20 E-value=0.021 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+||||+|||++++.++..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 59999999999999999988876
No 465
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.20 E-value=0.028 Score=56.71 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
+....-+.|.||+|+|||||++.|+..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45566789999999999999999998763
No 466
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.18 E-value=0.025 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
.++.-|.|+|++|+||||+++.|+..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344568899999999999999999765
No 467
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.14 E-value=0.029 Score=55.44 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.4
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999888753
No 468
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.11 E-value=0.31 Score=52.49 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=32.2
Q ss_pred CCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003859 376 VSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (791)
Q Consensus 376 ~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 436 (791)
.+|+++.-...+.+.|...-.. -..+ +.+..+ ....++|+.+|+|+|||+++-..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFE-HPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCC-SCCHHHHHHHHHH--TTTCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHH
Confidence 3566765556666666553111 0011 111111 22467999999999999876554443
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.10 E-value=0.03 Score=60.20 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEech
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (791)
..|+|.||+|+|||+||..||..++ +.++..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 4689999999999999999999884 555555443
No 470
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.09 E-value=0.03 Score=57.21 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASK 439 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (791)
..+.-|-|.||+|+|||||++.|+..++.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 44455889999999999999999998853
No 471
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.07 E-value=0.027 Score=55.10 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=19.7
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
|+|.|+||||||++++.++..+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 7899999999999999888854
No 472
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.05 E-value=0.019 Score=55.31 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=15.4
Q ss_pred cEEEecCCCCChhHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
-|+|+|+||||||++++.++..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999988888765
No 473
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.03 E-value=0.12 Score=56.26 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHcccCCh---hHhhhcCCCCCceEEEEcCCCChHHHHHH
Q 003859 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYP---DFFASYHITPPRGVLLCGPPGTGKTLIAR 431 (791)
Q Consensus 374 ~~~~~~~l~G~e~~k~~L~~~v~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~lar 431 (791)
+..+|+++.-....++.|...-.. ...+ ..+..+--..+.++|+++|+|+|||+++-
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFN-RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 345677877677777777653211 0011 11111111234789999999999998753
No 474
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.02 E-value=0.044 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-++|+||||+|||++++.++..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999888765
No 475
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.01 E-value=0.026 Score=59.37 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHH
Q 003859 414 RGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l 437 (791)
..|+|.|+||+||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999853
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.01 E-value=0.043 Score=55.62 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..+..|.|.|++||||||+++.||..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455789999999999999999999884
No 477
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.00 E-value=0.024 Score=55.95 Aligned_cols=21 Identities=43% Similarity=0.388 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 003859 415 GVLLCGPPGTGKTLIARALAC 435 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~ 435 (791)
.|.|.||+||||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 478
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.00 E-value=0.052 Score=59.58 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=37.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHcCchhHH-------HH--HHHHHHHH---HHhhhhhc--------CCceEEEEeCch
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFYMNWRNFL-------FI--LLVFQLFF---QILVPRHQ--------RRHWCIYLVKLE 764 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~~~~~~~~-------l~--~d~~e~~~---~~~~~a~~--------~~P~ivfldeid 764 (791)
.+||+|++||||+++|+++.........+. +. ....++|. ..|+.+.. ....+||||||+
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~ 241 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIG 241 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGG
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChh
Confidence 589999999999966655554422111111 11 11223432 23443332 235699999999
Q ss_pred hhcccc
Q 003859 765 EQRHQY 770 (791)
Q Consensus 765 ~~a~~~ 770 (791)
.+-...
T Consensus 242 ~l~~~~ 247 (387)
T 1ny5_A 242 ELSLEA 247 (387)
T ss_dssp GCCHHH
T ss_pred hCCHHH
Confidence 886543
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.99 E-value=0.051 Score=63.07 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566679999999999999999998765
No 480
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.99 E-value=0.053 Score=63.12 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4566779999999999999999998765
No 481
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.95 E-value=0.13 Score=51.93 Aligned_cols=35 Identities=17% Similarity=0.004 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEE
Q 003859 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (791)
.-.++|||.|+|||+.+-.++..+...+.++.++.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44678999999999888777777766676676654
No 482
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.95 E-value=0.028 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.|+|+|+||||||++++.++..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999888888765
No 483
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.94 E-value=0.046 Score=63.37 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3556678999999999999999998765
No 484
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.92 E-value=0.028 Score=54.68 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.4
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
++|+||+|+|||++++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999988743
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.92 E-value=0.072 Score=54.30 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhcCCc
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQK 443 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~ 443 (791)
.+.-|.|.|++|+||||+++.|+..+...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 34568899999999999999999999877766
No 486
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.91 E-value=0.034 Score=56.87 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.7
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.|+|+||||+|||++++.++..+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999998888765
No 487
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.88 E-value=0.064 Score=68.16 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (791)
++...+.|+||+|+|||||+++|...+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 455678899999999999999998765
No 488
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.88 E-value=0.03 Score=55.79 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.1
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.|+|+||||+|||++++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999998888765
No 489
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.87 E-value=0.032 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.034 Sum_probs=19.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
.|+|+|+||||||++++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999998888887753
No 490
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.86 E-value=0.033 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=19.5
Q ss_pred cEEEecCCCCChhHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQF 726 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~ 726 (791)
-|+|.|+||||||++++.++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999888888775
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.85 E-value=0.095 Score=60.06 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=24.7
Q ss_pred hhhcCCCCC---ceEEEEcCCCChHHHHHHHHHHHH
Q 003859 405 FASYHITPP---RGVLLCGPPGTGKTLIARALACAA 437 (791)
Q Consensus 405 ~~~~g~~~~---~~vLL~GppGtGKT~laralA~~l 437 (791)
|+-++++.+ ..+-|.||.|+|||||++.|+..+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444444433 357799999999999999998754
No 492
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.82 E-value=0.032 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHHHHH
Q 003859 706 LLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 706 ~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
|+|+||||||||++++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999998888764
No 493
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.80 E-value=0.053 Score=57.51 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHh--hcCCceEEEEEec
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAAS--KAGQKVSFYMRKG 451 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~--~~~~~~~~~~i~~ 451 (791)
..+.-|.|.||+|+|||||++.|+..+. .....+.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 3445688999999999999999999875 2233455544443
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.80 E-value=0.039 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHHh
Q 003859 414 RGVLLCGPPGTGKTLIARALACAAS 438 (791)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (791)
..|.|+|++|||||++++.|+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999999874
No 495
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.77 E-value=0.02 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=17.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH-HHH
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALA-CAA 437 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA-~~l 437 (791)
.++.-+.|.||+|+|||||++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 765
No 496
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.76 E-value=0.043 Score=53.02 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechh
Q 003859 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (791)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (791)
.+.|.|++|+|||||++.|+..+...++..-.+.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 588999999999999999999987655445555555443
No 497
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.76 E-value=0.068 Score=57.08 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHHhhc--CCceEEEEEec
Q 003859 412 PPRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKG 451 (791)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~i~~ 451 (791)
.+.-+.|.||+|||||||++.|+..+... ...+.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 34568899999999999999999988632 23455555444
No 498
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.75 E-value=0.03 Score=55.12 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHH
Q 003859 705 RLLLCGSEGTGVFNRIILGLQFY 727 (791)
Q Consensus 705 g~Ll~GPPGtGKT~la~~~~~~~ 727 (791)
-|+|+|+||||||++++.++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999998888887653
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.74 E-value=0.17 Score=51.05 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEechhhhhhhHhHHHHH---------HHHHHHHHHhcCCeEEEEeCC
Q 003859 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQ---------LKLLFEEAQRNQPSIIFFDEI 486 (791)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~~~~~~~g~~~~~---------l~~lf~~a~~~~p~VL~IDEi 486 (791)
|.+.|..|+||||++-.||..+...+.++-++..+...-+..+++..... +..++.........+-....+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPKV 82 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCch
Q ss_pred CccCCCCC----------------CchhhhhHHHHHHHHHHHhcc-CCCCcEEEeccCCchhhhhhhhcCCCCccccccC
Q 003859 487 DGLAPVRS----------------SKQEQIHNSIVSTLLALMDGL-DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNF 549 (791)
Q Consensus 487 D~L~~~~~----------------~~~~~~~~~v~~~Ll~~l~~~-~~~~~vivIattn~~~~Ld~aL~r~gRf~~~I~~ 549 (791)
+.+..... .............|...++.+ ...-.++||=+..........+.. ..+.+|.+
T Consensus 83 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~l~--~aD~viiv 160 (254)
T 3kjh_A 83 DGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAK--AVDMMIAV 160 (254)
T ss_dssp TTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHHHT--TCSEEEEE
T ss_pred hccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHHHH--HCCEEEEe
Q ss_pred CCCCHHHHHHHHHHH
Q 003859 550 PLPGCEARAEILDIH 564 (791)
Q Consensus 550 ~~Pd~eer~~IL~~~ 564 (791)
-.|+......+.+..
T Consensus 161 ~~~~~~s~~~~~~~~ 175 (254)
T 3kjh_A 161 IEPNLNSIKTGLNIE 175 (254)
T ss_dssp ECSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
No 500
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.73 E-value=0.035 Score=58.08 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHHhhcCCceEEEEEe
Q 003859 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (791)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (791)
..+..|.|+|++||||||+|+.|+ .++ +.++..+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg-----~~~id~D 106 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLG-----AYIIDSD 106 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHT-----CEEEEHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCC-----CcEEehh
Done!