Query 003860
Match_columns 791
No_of_seqs 338 out of 2348
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 13:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 7E-144 2E-148 1274.2 74.5 766 4-790 25-801 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1E-121 2E-126 1088.2 76.8 729 13-790 13-759 (831)
3 COG0308 PepN Aminopeptidase N 100.0 1.7E-90 3.7E-95 820.4 63.6 748 9-790 12-785 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 8.3E-85 1.8E-89 760.8 72.5 734 11-790 4-808 (863)
5 PRK14015 pepN aminopeptidase N 100.0 4.9E-84 1.1E-88 756.8 72.3 737 11-790 16-818 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 2.1E-77 4.6E-82 682.0 40.4 427 9-465 6-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 3.2E-75 7E-80 646.4 36.1 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1.3E-54 2.9E-59 454.9 27.6 430 11-463 13-460 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 2.1E-43 4.6E-48 381.7 25.3 254 532-790 1-262 (324)
10 KOG1932 TATA binding protein a 100.0 1.5E-34 3.2E-39 325.0 34.7 428 16-465 27-506 (1180)
11 COG3975 Predicted protease wit 99.4 5.2E-11 1.1E-15 127.1 20.3 302 158-475 115-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 4E-11 8.7E-16 110.4 6.9 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.5 0.0064 1.4E-07 64.7 18.1 143 298-455 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.2 0.00018 3.8E-09 64.2 2.6 44 301-344 4-58 (122)
15 PF11940 DUF3458: Domain of un 96.9 0.11 2.4E-06 56.2 20.3 299 468-789 6-353 (367)
16 PF04450 BSP: Peptidase of pla 96.2 0.07 1.5E-06 52.7 12.5 171 236-450 26-204 (205)
17 PF07607 DUF1570: Protein of u 95.8 0.0052 1.1E-07 55.5 2.3 38 303-341 3-43 (128)
18 smart00638 LPD_N Lipoprotein N 92.8 2.1 4.5E-05 50.2 15.3 198 549-763 356-560 (574)
19 PF10026 DUF2268: Predicted Zn 92.4 0.54 1.2E-05 46.5 8.1 100 239-345 4-113 (195)
20 PRK04860 hypothetical protein; 89.6 0.85 1.8E-05 43.1 6.1 70 236-314 5-76 (160)
21 PF01863 DUF45: Protein of unk 87.0 2.4 5.3E-05 42.1 8.0 93 235-354 109-201 (205)
22 PF10023 DUF2265: Predicted am 86.8 0.66 1.4E-05 49.0 3.8 40 299-344 163-202 (337)
23 COG4324 Predicted aminopeptida 84.3 1.1 2.3E-05 44.8 3.6 40 299-344 195-234 (376)
24 PF01347 Vitellogenin_N: Lipop 83.0 15 0.00032 43.5 13.5 200 550-763 395-604 (618)
25 smart00731 SprT SprT homologue 81.4 1.9 4.1E-05 40.4 4.1 65 242-315 5-73 (146)
26 PF13646 HEAT_2: HEAT repeats; 72.0 8.1 0.00017 32.1 5.1 75 659-745 14-88 (88)
27 PF04234 CopC: CopC domain; I 69.0 23 0.00049 30.4 7.2 62 44-108 17-81 (97)
28 PF12725 DUF3810: Protein of u 68.5 5.2 0.00011 42.7 3.8 32 301-344 196-227 (318)
29 PF01447 Peptidase_M4: Thermol 66.7 11 0.00023 35.5 5.0 74 231-312 67-146 (150)
30 PF12315 DUF3633: Protein of u 63.8 11 0.00023 37.0 4.5 41 301-343 93-133 (212)
31 PF03272 Enhancin: Viral enhan 61.5 2.8E+02 0.006 33.7 16.7 129 303-451 238-377 (775)
32 PF01435 Peptidase_M48: Peptid 57.3 8.1 0.00018 38.8 2.7 70 242-320 35-108 (226)
33 COG1451 Predicted metal-depend 57.3 48 0.001 33.4 8.1 93 234-353 119-211 (223)
34 PF10989 DUF2808: Protein of u 54.5 39 0.00084 31.6 6.5 47 73-120 76-122 (146)
35 COG0362 Gnd 6-phosphogluconate 53.7 82 0.0018 34.3 9.3 118 566-704 312-444 (473)
36 PRK04351 hypothetical protein; 53.6 16 0.00035 34.2 3.7 16 298-313 58-73 (149)
37 COG4783 Putative Zn-dependent 52.5 15 0.00033 40.6 3.8 52 256-312 90-141 (484)
38 PF10263 SprT-like: SprT-like 51.9 30 0.00066 32.5 5.5 18 298-315 57-74 (157)
39 PF06114 DUF955: Domain of unk 51.5 15 0.00033 32.3 3.3 19 300-318 41-59 (122)
40 COG2719 SpoVR Uncharacterized 47.3 1.2E+02 0.0027 33.2 9.4 51 303-359 251-301 (495)
41 PRK09687 putative lyase; Provi 46.1 3.7E+02 0.0081 28.1 16.0 94 660-764 143-236 (280)
42 COG3227 LasB Zinc metalloprote 45.5 23 0.0005 39.1 3.8 111 227-344 265-381 (507)
43 PF08325 WLM: WLM domain; Int 45.4 79 0.0017 30.8 7.3 23 295-317 76-98 (186)
44 COG2372 CopC Uncharacterized p 43.6 65 0.0014 29.0 5.7 60 47-109 47-110 (127)
45 COG0501 HtpX Zn-dependent prot 42.7 37 0.00081 35.8 5.1 67 245-319 106-175 (302)
46 PF13699 DUF4157: Domain of un 42.3 35 0.00075 28.1 3.7 66 243-313 6-73 (79)
47 PHA02456 zinc metallopeptidase 40.0 15 0.00032 31.7 1.1 14 300-313 78-91 (141)
48 PRK01345 heat shock protein Ht 39.4 53 0.0012 35.1 5.5 68 240-316 69-139 (317)
49 PRK03982 heat shock protein Ht 38.9 71 0.0015 33.6 6.4 66 240-316 70-140 (288)
50 PRK05457 heat shock protein Ht 38.8 60 0.0013 34.1 5.8 68 240-316 79-149 (284)
51 PF14675 FANCI_S1: FANCI solen 37.6 96 0.0021 31.2 6.7 118 568-687 4-122 (223)
52 PF15641 Tox-MPTase5: Metallop 37.6 57 0.0012 26.9 4.0 19 298-316 61-80 (109)
53 PF04597 Ribophorin_I: Ribopho 37.3 3.1E+02 0.0068 30.7 11.4 86 24-109 10-103 (432)
54 PRK10301 hypothetical protein; 37.1 2.3E+02 0.005 25.5 8.5 26 84-109 84-109 (124)
55 PRK04897 heat shock protein Ht 36.7 49 0.0011 35.0 4.7 68 240-316 82-152 (298)
56 cd04269 ZnMc_adamalysin_II_lik 36.5 1.2E+02 0.0026 29.6 7.3 14 300-313 130-143 (194)
57 PF13574 Reprolysin_2: Metallo 36.2 23 0.0005 34.1 2.0 13 301-313 111-123 (173)
58 PF08014 DUF1704: Domain of un 36.0 1.8E+02 0.0039 31.5 8.9 83 243-340 118-213 (349)
59 PF01431 Peptidase_M13: Peptid 36.0 47 0.001 32.8 4.3 32 287-318 22-53 (206)
60 PRK02870 heat shock protein Ht 32.7 85 0.0019 33.8 5.8 64 241-312 118-184 (336)
61 PRK03001 M48 family peptidase; 32.7 77 0.0017 33.2 5.4 68 240-316 69-139 (283)
62 PRK03072 heat shock protein Ht 32.4 89 0.0019 32.9 5.8 69 239-316 71-142 (288)
63 PRK02391 heat shock protein Ht 32.0 91 0.002 33.0 5.8 68 240-316 78-148 (296)
64 PF12174 RST: RCD1-SRO-TAF4 (R 29.9 1.2E+02 0.0026 24.3 4.8 47 395-442 11-57 (70)
65 PF13205 Big_5: Bacterial Ig-l 29.4 3.4E+02 0.0074 23.0 8.3 26 83-108 59-85 (107)
66 cd04279 ZnMc_MMP_like_1 Zinc-d 28.5 2.1E+02 0.0046 26.7 7.2 36 219-254 2-40 (156)
67 KOG2661 Peptidase family M48 [ 28.4 39 0.00084 35.4 2.2 20 297-316 271-290 (424)
68 PF14524 Wzt_C: Wzt C-terminal 28.4 1.4E+02 0.0031 27.0 5.9 25 83-107 83-107 (142)
69 PF13646 HEAT_2: HEAT repeats; 28.4 77 0.0017 25.9 3.8 62 698-763 13-74 (88)
70 COG3091 SprT Zn-dependent meta 27.9 90 0.002 29.0 4.2 23 240-262 7-29 (156)
71 PRK01265 heat shock protein Ht 27.6 1.1E+02 0.0025 32.6 5.6 66 241-315 86-154 (324)
72 PF13402 M60-like: Peptidase M 26.7 1.3E+02 0.0028 31.8 6.0 107 232-346 144-259 (307)
73 PF09836 DUF2063: Uncharacteri 26.3 36 0.00079 28.9 1.4 32 401-432 54-85 (94)
74 KOG3607 Meltrins, fertilins an 25.7 1.5E+02 0.0033 35.4 6.7 81 220-312 242-334 (716)
75 PF12069 DUF3549: Protein of u 24.4 3.7E+02 0.008 28.9 8.5 96 664-770 171-267 (340)
76 PF09768 Peptidase_M76: Peptid 24.3 2.8E+02 0.0061 26.7 7.1 26 297-322 67-92 (173)
77 smart00638 LPD_N Lipoprotein N 23.9 6.8E+02 0.015 29.1 11.9 31 731-761 457-487 (574)
78 cd04272 ZnMc_salivary_gland_MP 23.3 1.8E+02 0.0039 29.1 6.0 13 301-313 145-157 (220)
79 PF14734 DUF4469: Domain of un 23.1 3.4E+02 0.0073 23.6 6.7 26 84-109 62-89 (102)
80 PRK15245 type III effector pho 21.1 2.6E+02 0.0056 27.4 6.0 117 147-284 89-215 (241)
81 PF01421 Reprolysin: Reprolysi 20.3 1.2E+02 0.0025 29.9 3.8 14 299-312 129-142 (199)
82 smart00675 DM11 Domains in hyp 20.0 7.7E+02 0.017 23.5 9.3 35 21-56 35-69 (164)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-144 Score=1274.18 Aligned_cols=766 Identities=49% Similarity=0.793 Sum_probs=703.7
Q ss_pred cCCCCcCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEEEec
Q 003860 4 FKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVE 83 (791)
Q Consensus 4 ~~~~~rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~ 83 (791)
+...+|||++++|+||+|.|.+++....|.|++.|.+++.++|+.|+||+.+++|.++.+....................
T Consensus 25 ~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (882)
T KOG1046|consen 25 FPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQ 104 (882)
T ss_pred ccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccccccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999875322111110000011111
Q ss_pred CCeEEEEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeeecc-CCeeeeeccccCCCCCCCceeeccCCCCCceEEEEE
Q 003860 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (791)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~ 161 (791)
. +.+.+.+++++..| .|+|+|.|.|++++++.|||+++|.+ .+.++++++|||||++||++|||||||++||+|.|+
T Consensus 105 ~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~It 183 (882)
T KOG1046|consen 105 E-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTIT 183 (882)
T ss_pred c-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEE
Confidence 1 68889999999999 79999999999999999999999987 566689999999999999999999999999999999
Q ss_pred EEeCCCCeEeecCcccce-eecCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEeCCchhhHHHHHHHH
Q 003860 162 LDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240 (791)
Q Consensus 162 i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~ 240 (791)
|.||++++|+|||++..+ ..++++++++|++||+||||++||+||+|++.+..+.+|+++|+|++|+...+.+++++.+
T Consensus 184 l~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~ 263 (882)
T KOG1046|consen 184 LVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVA 263 (882)
T ss_pred EEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHH
Confidence 999999999999999876 4455599999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCc
Q 003860 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (791)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~ 320 (791)
.++|++|+++||+|||+||+|+|++|+|..|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+|||
T Consensus 264 ~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm 343 (882)
T KOG1046|consen 264 TKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTM 343 (882)
T ss_pred HHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhhcccccccccchhHHH
Q 003860 321 EWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (791)
Q Consensus 321 ~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (791)
+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|++.++||+..++.++.++.+.||.++|.||++|+
T Consensus 344 ~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvl 423 (882)
T KOG1046|consen 344 KWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVL 423 (882)
T ss_pred hhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999887776 5799999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhccCCCcceEEEEEeCcEEEEEEEeeccC
Q 003860 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSS 479 (791)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~l~~~~~~W~~~~G~P~v~v~~~~~~~~l~Q~rf~~~ 479 (791)
|||+.++|++.|++||+.|+.+|+|+|++++|||++|+...+.+++.+|+.|+.|+|||+|+|.++++.++++|+||...
T Consensus 424 RML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~ 503 (882)
T KOG1046|consen 424 RMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLSD 503 (882)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhccC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CC--CCCCeeEEEEEEEECcccceeeEEeecceeEEEecccccccccCCCCCCceEEEcCCceeEEEEEcCHHHHHHHHH
Q 003860 480 GS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGY 557 (791)
Q Consensus 480 ~~--~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~w~~l~~ 557 (791)
.. .....|+||++|.+.+.+.....++..++..+.++. .+ +||++|.++.|||||+||+++|+.|++
T Consensus 504 ~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~~ 572 (882)
T KOG1046|consen 504 PDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLIE 572 (882)
T ss_pred CCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHHH
Confidence 64 334599999999887665445678887777777764 33 699999999999999999999999999
Q ss_pred HHHh-cCCChhhHHHHHHHHHHHHHhccCChHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 003860 558 AIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFI 636 (791)
Q Consensus 558 ~L~~-~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 636 (791)
+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...|..+.. +.. .+.+..++.|+.
T Consensus 573 ~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~ 649 (882)
T KOG1046|consen 573 QLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFVK 649 (882)
T ss_pred HHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHHH
Confidence 9976 689999999999999999999999999999999999999999999999999998888 444 568899999999
Q ss_pred HHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccC
Q 003860 637 SLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSAS 716 (791)
Q Consensus 637 ~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g 716 (791)
+++.+.++++||.....++ ....+|..++..||..|+++|++.|.++|..|+.. +..+|+++|.+|||.+++ +|
T Consensus 650 ~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~~---~g 723 (882)
T KOG1046|consen 650 KLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAVQ---FG 723 (882)
T ss_pred HHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHHH---hc
Confidence 9999999999998755444 77899999999999999999999999999999987 778999999998887655 88
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-CcCccccceeeee-eccc--cHHHHHHHHHh
Q 003860 717 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKV 790 (791)
Q Consensus 717 ~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~-~~v~~qd~~~~~~-v~~~--g~~~~w~f~~~ 790 (791)
+++.|++++++|+++....||..++.||+|+++++.++++|++.++ +.++.||...++. ++.| |.++||+|+++
T Consensus 724 ~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~ 801 (882)
T KOG1046|consen 724 TEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQD 801 (882)
T ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988 4699999999999 8877 99999999975
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.1e-121 Score=1088.18 Aligned_cols=729 Identities=23% Similarity=0.324 Sum_probs=613.9
Q ss_pred CceeeeEEEEEEecCCCC--eEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEEEecCCeEEEE
Q 003860 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (791)
Q Consensus 13 ~v~p~~Y~l~l~~d~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (791)
.+.+.||+|+|+++.+.. .+.|+++|+|++.++++.|+||+.+++|++|.+++. .......++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999976544 558999999999888999999999999999998641 111222223 346
Q ss_pred EeCCCCCCceEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeccccCCCCCCCceeeccCCCCCceEEEEEEEeCCCCeE
Q 003860 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (791)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~i~~p~~~~~ 170 (791)
.++. |++|.++|+|.|.+.+++.+.|+|+..+..+|+ ++++|||||.+||+||||||||++||+|+|+|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 777889999999999999999999955444453 7789999999999999999999999999999999999999
Q ss_pred eecCcccceeecCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEeCCchhh--HHHHHHHHHHHHHHHH
Q 003860 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (791)
Q Consensus 171 ~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (791)
+|||++.+....++.++++|+.+||||||++||++|+|+..+. ..+|+++++|++|+..+. ++++++.++++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999999874 456899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccchhHH
Q 003860 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (791)
Q Consensus 249 ~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL 328 (791)
++||+|||++|+|+|++|+|..|||||||+|+|+|. +++.+. .+...++.++.+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 335567788999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhhcccccccccchhHHHHHHHHhhC
Q 003860 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (791)
Q Consensus 329 ~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG 407 (791)
|||||+||+++++++.+|++..+..|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999998888876544 668889999999999999899899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhccCCCcceEEEEEeC--cEEE-EEEEeeccCCCCCC
Q 003860 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPGD 484 (791)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~l~~~~~~W~~~~G~P~v~v~~~~--~~~~-l~Q~rf~~~~~~~~ 484 (791)
++.|+++||.|+++|+|+|++++|||+++++++|.+++.||++|++|+|+|+|+|+++. +.+. +.|.+ .+ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 99999999999999999999999999999999999999999999999999999998753 4444 22221 11 12
Q ss_pred CeeEEEEEEEECccccee-----eEEeecceeEEEecccccccccCCCCCCceEEEcCCceeEEEEEcCHHHHHHHHHHH
Q 003860 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (791)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd~~~w~~l~~~L 559 (791)
..|.|||.+....+.... .+++...... ++... ..... +||++|.++.|||||+||+++|+.|+++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332211 1334332221 22110 01133 79999999999999999999999999998
Q ss_pred HhcCCChhhHHHHHHHHHHHHHhccCChHHHHHHH-hhcCCCCcHHHHHHHHHHHH-HHHHHHhccChhHHHHHHHHHHH
Q 003860 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 637 (791)
Q Consensus 560 ~~~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~ 637 (791)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+..+++++..
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 23799999999999999999999999999965 89999999999999999999 88888754 5678899999988
Q ss_pred HHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCC
Q 003860 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 717 (791)
Q Consensus 638 l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~ 717 (791)
++.+.... ++++.+..++. +..++|..|+++|++.++++|+.++.+ ..||||+|..|||++++ ++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~ 683 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----LG 683 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----cC
Confidence 88864422 22323333333 555799999999999999999998754 36999999999986543 57
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCccccceeeee-eccc-cHHHHHHHHHh
Q 003860 718 RSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKV 790 (791)
Q Consensus 718 ~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~v~~qd~~~~~~-v~~~-g~~~~w~f~~~ 790 (791)
.++|+.++++|+.++++.+|..++.||||++|++++++.+..++++ .++.||+..++. ++.. +++++|+|+++
T Consensus 684 ~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (831)
T TIGR02412 684 FIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAER 759 (831)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHH
Confidence 7889999999999999999999999999999999999766666655 599999998988 8755 99999999975
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-90 Score=820.39 Aligned_cols=748 Identities=31% Similarity=0.483 Sum_probs=607.5
Q ss_pred cCCCCcee-ee--EEEEEEecCC--CCeEEEEEEEEEEE--EcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEEE
Q 003860 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (791)
Q Consensus 9 rLp~~v~p-~~--Y~l~l~~d~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~ 81 (791)
.++..+.| .+ |++.|+++.. +.+|+|+++|++.. ..+...|+||+.+|+|.++.+++... .. .+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~---~~ 82 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA---WY 82 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc---cc
Confidence 44455555 66 7777765544 58999999999987 34444499999999999999987311 11 22
Q ss_pred ecCCeEEEEEeCCCC-----CCceEEEEEEEEeeeC-CCCcceEEeeeccCCeeeeeccccCCCCCCCceeeccCCCCCc
Q 003860 82 VEADEILVLEFAETL-----PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (791)
Q Consensus 82 ~~~~~~l~i~l~~~l-----~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~DeP~~k 155 (791)
..+.+.+.+....+. .++...+.+.+++... +...|+|++.+.. ..++.||||+.+||+||||+|+|+.|
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 83 RLDGDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cccCccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 333334344333222 2346778888888777 6788999887643 67889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEeecCcccceee-cCCeEEEEEEcCCCCcceEEEEEEeeeeEeecccc---CCeEEEEEEeCCchh
Q 003860 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (791)
Q Consensus 156 a~f~i~i~~p~~~~~~sn~~~~~~~~-~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~---~~~~v~v~~~~~~~~ 231 (791)
|+|+++|+.++++.++|||+...... .+++++++|..++||||||+|+++|+|..++.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987643 35589999999999999999999999988775442 479999999998899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHH
Q 003860 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (791)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (791)
.++++++.+.+++++||++||+|||+++ ++|++|+|+.|||||||+++|++..+|.+++.++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998878878889999999999999
Q ss_pred HHhcCccCccccchhHHhhhHHHHHHHHHhhhhCC-cchhHHHHHHHHHh-hhhccccCCCCceeeecCCchhhhccccc
Q 003860 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (791)
Q Consensus 312 qWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pi~~~~~~~~~~~~~f~~ 389 (791)
|||||+|||+||+++|||||||+|+++...+.++| .|..|..+...... ++..|+...+||+...+.++.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888766554 78889999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhccCCCcceEEEEEeCc-E
Q 003860 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (791)
Q Consensus 390 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~l~~~~~~W~~~~G~P~v~v~~~~~-~ 468 (791)
++|.||++|+|||+.++|++.|+++|+.|+++|++++++++|||+++++++|+|++.+|+.|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999886 7
Q ss_pred EEEEEEeeccCCCCCCCeeEEEEEEEECcccceeeEEeecceeEEEecccccccccCCCCCCceEEEcCCceeEEEEEcC
Q 003860 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (791)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~Yd 548 (791)
++++|+||...+......|.||+.+............+.....++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998877334459999999988754422333455555566665421 0111 368999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhccCChHHHHHHHhhcCCCCcHHHH-HHHHH-HHHHHHHHHhccChh
Q 003860 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLIT-ISYKIGRIAADARPE 626 (791)
Q Consensus 549 ~~~w~~l~~~L~~~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w-~~~~~-~l~~l~~~~~~~~~~ 626 (791)
.+.|..++.... .++..+|+.++.|..++..+|+.+...++..+....++.....+ ..++. .+..+..... .+
T Consensus 551 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 999998877633 78899999999999999999999999999877765554444444 33333 3333322211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhh
Q 003860 627 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 706 (791)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy 706 (791)
..+.......+...+.++++....++.. .......+ +.++...+..+.+.+..++..+-.. ...++|++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 3555666777777777777765433322 22222222 6777788889999999998877543 3458899998766
Q ss_pred heeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCccccceeeee-ecc--ccHH
Q 003860 707 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSI--EGRE 782 (791)
Q Consensus 707 ~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~v~~qd~~~~~~-v~~--~g~~ 782 (791)
..+..+ .+..+.+..+.+.|..+.....+..+..+.+....+..+.+.|..+..+ .+.+|+...+.. ... ++++
T Consensus 700 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (859)
T COG0308 700 KAYAAA--GNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNE 777 (859)
T ss_pred HHHHHh--cChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchh
Confidence 555432 3334468999999998888899999999999999999999999999877 689999888777 333 3999
Q ss_pred HHHHHHHh
Q 003860 783 TAWKWLKV 790 (791)
Q Consensus 783 ~~w~f~~~ 790 (791)
++|.|...
T Consensus 778 ~~~~~~~~ 785 (859)
T COG0308 778 ARWLYGTF 785 (859)
T ss_pred hHHHHHHH
Confidence 99998764
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=8.3e-85 Score=760.78 Aligned_cols=734 Identities=20% Similarity=0.248 Sum_probs=520.2
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEEEecCCeEEEE
Q 003860 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (791)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (791)
|..+...||+|+|+++++...++|+++|+++..++...|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 56688999999999999999999999999998777778999999999999999652 111 1335566678888
Q ss_pred EeCCCCCCceEEEEEEEEeee--CCCCcceEEeeeccCCeeeeeccccCCCCCCCceeeccCCCCCceEEEEEEEeCCC-
Q 003860 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (791)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~i~~p~~- 167 (791)
.. + ++.++|+|.|.+.. +....|+|++.+ +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 35789999997644 455789999753 568999999999999999999999999999999996
Q ss_pred C-eEeecCcccce-eecCCeEEEEEEcCCCCcceEEEEEEeeeeEeecc----ccCCeEEEEEEeCCchhhHHHHHHHHH
Q 003860 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (791)
Q Consensus 168 ~-~~~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~----~~~~~~v~v~~~~~~~~~~~~~l~~~~ 241 (791)
| +++|||+++.. ...+++++++|+.++|||+||+||++|+|+.++.. ...++++++|++|+..++++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 7 56899987765 33567889999999999999999999999988742 224589999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCcc
Q 003860 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (791)
Q Consensus 242 ~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~ 321 (791)
++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...++.+..+|+||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999987666667778999999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHhhhhCCcchh-HHHHHHHHHhhhhccccCCCCceeeecCCchhhhcccccccccchhHHHH
Q 003860 322 WWTHLWLNEGFATWVSYLAADSLFPEWKI-WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIR 400 (791)
Q Consensus 322 ~w~d~WL~EGfA~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~ 400 (791)
||+++|||||||+|++..+.....+.... ......-....+..|+...+||+.. .+..+++..|+.++|.||++|+|
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLr 381 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIR 381 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHH
Confidence 99999999999999997665554432110 0000000012355677788888864 34456778899999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhccCCCcceEEEEEeC----c--EEEEEEE
Q 003860 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQS 474 (791)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~l~~~~~~W~~~~G~P~v~v~~~~----~--~~~l~Q~ 474 (791)
||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+..|+ +|++|+|+|+|+|+++. + +++++|.
T Consensus 382 ML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~ 460 (863)
T TIGR02414 382 MLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQS 460 (863)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999985 89999999999999863 2 4566665
Q ss_pred eeccCCCCCCCeeEEEEEEEEC--cccc-----------eeeEEeecceeEEEecccccccccCCCCCCceEEEcCCcee
Q 003860 475 QFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (791)
Q Consensus 475 rf~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~g 541 (791)
+....+......|.|||.+... ++.. ...+.++.+++++.++.+.. . -.+-++.+...
T Consensus 461 ~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~~------~---p~~sl~r~fsa 531 (863)
T TIGR02414 461 TPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIAE------K---PVPSLLRGFSA 531 (863)
T ss_pred CCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCCC------C---CeeeecCCCCc
Confidence 4322233344589999998653 2221 12356778888888875321 2 35778888888
Q ss_pred EEEEEcCH--HHHHHHHHHHHhcCCChhhHH---HHHH-----HHHHHHHhcc-CC-hHHHHHHHhhcCCCC--cHHHHH
Q 003860 542 FYRVKYDK--DLAARLGYAIEMKQLSETDRF---GILD-----DHFALCMARQ-QT-LTSLLTLMASYSEET--EYTVLS 607 (791)
Q Consensus 542 yyrv~Yd~--~~w~~l~~~L~~~~~~~~~r~---~li~-----D~~~la~~g~-l~-~~~~l~l~~~l~~E~--~~~~w~ 607 (791)
+-++.|+. +.+..|.+. + -+..+|. |-+- +...-...|. +. -..+++.+..+-.+. |...-.
T Consensus 532 pv~l~~~~~~~~l~~l~~~---d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a 607 (863)
T TIGR02414 532 PVNLEYPYSDEDLLLLLAH---D-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKA 607 (863)
T ss_pred eEEEeCCCCHHHHHHHHhh---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 88887764 434333332 1 1122221 1111 1110011222 11 234555555532222 332222
Q ss_pred HHH--HHHHHHHHHHhccChhH--------HHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcCC
Q 003860 608 NLI--TISYKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGH 674 (791)
Q Consensus 608 ~~~--~~l~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~i~~~ac~~g~ 674 (791)
.++ .....|...+..-+|+. ...+..-++..+..+|+++--.. ...+..-.+.||..+++++|..+.
T Consensus 608 ~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~ 687 (863)
T TIGR02414 608 LLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADD 687 (863)
T ss_pred HHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 221 11122222221112222 22333334444555666653211 011223448999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHH
Q 003860 675 KETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVL 754 (791)
Q Consensus 675 ~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~ 754 (791)
++..+.|.+.|++-- + ---|-+.+.+++..-....++..+..++++++....-+|.-.+.|.+. .++.+.
T Consensus 688 ~~~~~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~--~~~~~~ 757 (863)
T TIGR02414 688 AEIRNLALEQFKSAD---N-----MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSP--RPDTLE 757 (863)
T ss_pred hhHHHHHHHHHHhCC---C-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC--cccHHH
Confidence 999999999987531 1 112333344443211112233567777778777777788877777543 455666
Q ss_pred HHHHHhccCc---Cccccceeeee-ec-cc----------cHHHHHHHHHh
Q 003860 755 EVLNFLLSSE---VRSQDAVYGLA-VS-IE----------GRETAWKWLKV 790 (791)
Q Consensus 755 ~~L~~~l~~~---v~~qd~~~~~~-v~-~~----------g~~~~w~f~~~ 790 (791)
++-.+.-++. -.|..+..++. ++ +| |+...-+.+.+
T Consensus 758 ~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ 808 (863)
T TIGR02414 758 RVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIA 808 (863)
T ss_pred HHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHH
Confidence 6655554442 23444445554 42 22 66666666543
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.9e-84 Score=756.78 Aligned_cols=737 Identities=21% Similarity=0.266 Sum_probs=515.6
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEE-EcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEEEecCCeEEE
Q 003860 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (791)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (791)
|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|+
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55588899999999999999999999999876 456789999999999999998752 11111 4455567888
Q ss_pred EEeCCCCCCceEEEEEEEEeeeC--CCCcceEEeeeccCCeeeeeccccCCCCCCCceeeccCCCCCceEEEEEEEeCC-
Q 003860 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS- 166 (791)
Q Consensus 90 i~l~~~l~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~i~~p~- 166 (791)
|.. + ++.++|+|.|++... ....|+|++.+ +++|||||.+||+||||+|+|++||+|+++|++|+
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 336899999987653 44679998642 56899999999999999999999999999999999
Q ss_pred CC-eEeecCccccee-ecCCeEEEEEEcCCCCcceEEEEEEeeeeEeecc--c--cCCeEEEEEEeCCchhhHHHHHHHH
Q 003860 167 EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--T--SDGIKVRVYCQVGKANQGKFALNVA 240 (791)
Q Consensus 167 ~~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~--~--~~~~~v~v~~~~~~~~~~~~~l~~~ 240 (791)
.| +++|||++++.. ..+++++++|+.++|||+||+||++|+|+.++.. + .+++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 48 689999988764 4677899999999999999999999999987742 2 2359999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCc
Q 003860 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (791)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~ 320 (791)
+++|++||++||.|||++|+++|++|+|..|||||||+++|++..++.++...+...+..+..+||||+|||||||+||+
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999998888766666677889999999999999999999
Q ss_pred cccchhHHhhhHHHHHHHHHhhhhCCc-chhHHHHHHHHHhhhhccccCCCCceeeecCCchhhhcccccccccchhHHH
Q 003860 321 EWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (791)
Q Consensus 321 ~~w~d~WL~EGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (791)
+||+++|||||||+|++..+.....+. +.............+..|+...+||+... +..+++..|+.++|.||++||
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vL 393 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEVI 393 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHHH
Confidence 999999999999999987766554321 11111100000123455776777887532 345677889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhccCCCcceEEEEEeC----c--EEEEEE
Q 003860 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (791)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~l~~~~~~W~~~~G~P~v~v~~~~----~--~~~l~Q 473 (791)
|||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+++|+++. + +++++|
T Consensus 394 rMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 394 RMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 89999999999999863 3 456666
Q ss_pred EeeccCCCCCCCeeEEEEEEEECc--ccc----------eeeEEeecceeEEEecccccccccCCCCCCceEEEcCCcee
Q 003860 474 SQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (791)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~g 541 (791)
.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. -.+.++.+...
T Consensus 473 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fsa 543 (875)
T PRK14015 473 STPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFSA 543 (875)
T ss_pred eCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCCC
Confidence 543322333445899999996422 221 2236678888889888532 12 34788888898
Q ss_pred EEEEEcCH--HHHHHHHHHHHhcCCChhhHHHHHHHH--HHHHHh-cc-CC-hHHHHHHHhhcC-C-CCcHHHHHHHHH-
Q 003860 542 FYRVKYDK--DLAARLGYAIEMKQLSETDRFGILDDH--FALCMA-RQ-QT-LTSLLTLMASYS-E-ETEYTVLSNLIT- 611 (791)
Q Consensus 542 yyrv~Yd~--~~w~~l~~~L~~~~~~~~~r~~li~D~--~~la~~-g~-l~-~~~~l~l~~~l~-~-E~~~~~w~~~~~- 611 (791)
+-++.|+. +.+..+.+.= .+.+..-+-+|-+-.- ..++.. |. +. -..+++.+..+- + +-+...-..++.
T Consensus 544 pv~~~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~l 622 (875)
T PRK14015 544 PVKLEYDYSDEDLLFLMAHD-SDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTL 622 (875)
T ss_pred cEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccC
Confidence 88888764 3333333210 1112111111111111 111111 22 11 234555555432 2 223322222211
Q ss_pred -HHHHHHHHHhccChhHH--------HHHHHHHHHHHHHHHHHcCCccC---CCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 003860 612 -ISYKIGRIAADARPELL--------DYLKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLGHKETLN 679 (791)
Q Consensus 612 -~l~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lr~~i~~~ac~~g~~~c~~ 679 (791)
....|...+..-+++.. ..+..-+...+..+|+++--... ..+..-.+.||..++.++|..+.++..+
T Consensus 623 p~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~ 702 (875)
T PRK14015 623 PSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAE 702 (875)
T ss_pred CCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 11222222211112222 22223333444445555421110 1223345899999999999999988888
Q ss_pred HHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003860 680 EASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNF 759 (791)
Q Consensus 680 ~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~~~L~~ 759 (791)
.|.+.|++-- + ---|-+.+.+++..-....++..+..++++++....-+|.-.+.|.+.. ++.+.++-.+
T Consensus 703 ~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~--~~~~~~v~~l 772 (875)
T PRK14015 703 LAEAQFDQAD---N-----MTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPA--PDTLERVRAL 772 (875)
T ss_pred HHHHHHhhCC---C-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCC--cCHHHHHHHH
Confidence 8988887431 1 1123333333332111122345667777777777777888888876544 4455555554
Q ss_pred hccCc---Cccccceeeee-ec-cc----------cHHHHHHHHHh
Q 003860 760 LLSSE---VRSQDAVYGLA-VS-IE----------GRETAWKWLKV 790 (791)
Q Consensus 760 ~l~~~---v~~qd~~~~~~-v~-~~----------g~~~~w~f~~~ 790 (791)
.-++. -.|..+..++. ++ +| |+...-+.+.+
T Consensus 773 ~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ 818 (875)
T PRK14015 773 MQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILA 818 (875)
T ss_pred hcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHH
Confidence 44442 23444445544 42 22 66666666543
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.1e-77 Score=682.00 Aligned_cols=427 Identities=24% Similarity=0.390 Sum_probs=349.9
Q ss_pred cCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEEcC-CCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEE----Eec
Q 003860 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVE----LVE 83 (791)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~----~~~ 83 (791)
.=|.+++|.||+|+|++|+++..|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. ...+. .+.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 588999999999999988652 11222 223
Q ss_pred CCeEEEEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeeeccccCCCCCCCceeeccCCCCCceEEEEE
Q 003860 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (791)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~ 161 (791)
.++.|+|.+++++.+| .++|+|.|+|..+ ..|++...+ ..+|..+++++|||||.+||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 5678999999999999 8999999999753 356654433 23567778889999999999999999999999999999
Q ss_pred EEeCCCCeEeecCcccceeecCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEeCCchhhHHHHHH-HH
Q 003860 162 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 240 (791)
Q Consensus 162 i~~p~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~-~~ 240 (791)
|++| ++|++||..+.+.. ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++++. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887765544332 345678999999999999999999998654 3678999999998888888888 99
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccC
Q 003860 241 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (791)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt 319 (791)
.++++++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 789999999999 5777776775432 23579999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHhhhhCCcchhH-HHHHH--HHHhhhhccccCCCCceeeecCCch--hhhcccccccccc
Q 003860 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRK 394 (791)
Q Consensus 320 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~pi~~~~~~~~--~~~~~f~~i~Y~K 394 (791)
++||+|+|||||||+|++.+++++++|++... ..+.. .....+ +.+...+|+...+.+.. +++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111112 12233345444333222 5678999999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCCHHHH-HHHhccCCCcceEEEEEe
Q 003860 395 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (791)
Q Consensus 395 g~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s-----~~~l~~~-~~~W~~~~G~P~v~v~~~ 465 (791)
|+++|+||+..+| ++.|+++||.|+++|+|++++++||+++|.+.. +.+++.+ |++|++++|+|.++++.+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2456666 899999999999876644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=3.2e-75 Score=646.42 Aligned_cols=385 Identities=46% Similarity=0.824 Sum_probs=342.5
Q ss_pred cCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCeeEEEecCCeEE
Q 003860 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (791)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (791)
|||++++|.||+|.|++|+++.+|+|+++|++++.++++.|+||+.+++|.++.+++..... ......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997643211 1122237788888999
Q ss_pred EEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeeecc--CCeeeeeccccCCCCCCCceeeccCCCCCceEEEEEEEeC
Q 003860 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (791)
Q Consensus 89 ~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~i~~p 165 (791)
+|.+++++.+| .++|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999975 6788899999999999999999999999999999999999
Q ss_pred CCCeEeecCcccceee-cCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEeCCchhhHHHHHHHHHHHH
Q 003860 166 SELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (791)
Q Consensus 166 ~~~~~~sn~~~~~~~~-~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (791)
++++|+|||++.+... ++++++++|..++|||+|++||++|+|..++..+.+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 9999999999988743 457999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccc
Q 003860 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (791)
Q Consensus 245 ~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~ 324 (791)
++|+++||+|||++|+|+|++|+|..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceeeecCCchhhhcccccccccch
Q 003860 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (791)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg 395 (791)
|+||+||||+|++++++++.+|++.++..+..+.+ .++..|....++|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888888877665 779999999999999888899999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=454.92 Aligned_cols=430 Identities=26% Similarity=0.395 Sum_probs=338.7
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeecCCCCCcccCee-EEEecCCeEEE
Q 003860 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTK-VELVEADEILV 89 (791)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 89 (791)
+..+...|++|++++|++...++|++.+++++..+...|+|+.++|+|.+|++++... +..+.. -.+...+..+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556789999999999999999999999999887776799999999999999986421 111111 11222333455
Q ss_pred EEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeeeccccCCCCCCCceeeccCCCCCceEEEEEEEeCCC
Q 003860 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (791)
Q Consensus 90 i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~ar~~fPc~DeP~~ka~f~i~i~~p~~ 167 (791)
+..+.+ +.| +..|.|.|...- +..|+-.-.- ...|+++.|+.+|+|..+||..|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 554433 355 899999998643 3345533222 33577888999999999999999999999999999999999999
Q ss_pred CeEeecCccccee-ecCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEeCCchhhHHHHHH-HHHHHHH
Q 003860 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (791)
Q Consensus 168 ~~~~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (791)
+++++++...++. ...++..++|+...|+|+||+||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999887664443 34457889999999999999999999987655 2667899999999888887777 9999999
Q ss_pred HHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccc
Q 003860 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (791)
Q Consensus 246 ~~e~~fg~~yP~~kld~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~ 324 (791)
.-|+.+| ||++.++|+|++ |+|++||||||.|.+.... +|-... ....+|||||||-||||+||...|+
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 6999999999987777766 554433 3678999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhh--hccccCCCCceeeecCC--chhhhcccccccccchhHHH
Q 003860 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGL--RLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVI 399 (791)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~d~~~~~~pi~~~~~~--~~~~~~~f~~i~Y~Kg~~vl 399 (791)
+.||||||++|++..++..++|+... +|-.-.. ..+ ..|.+...++...-+.+ .-+.+..|+.+.|.||..++
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll 389 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALL 389 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHH
Confidence 99999999999999999999987432 2211111 111 22444555555432221 13457789999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----CH--HHHHHHhccCCCcceEEEE
Q 003860 400 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 463 (791)
Q Consensus 400 ~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~----~l--~~~~~~W~~~~G~P~v~v~ 463 (791)
+.|++.+| ++.|...||.|+++|+++.+.++||.+.|-+.... ++ .--++.|++.+|.|...-.
T Consensus 390 ~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 390 FYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999998 77899999999999999999999999998776432 22 2347999999999985433
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=2.1e-43 Score=381.70 Aligned_cols=254 Identities=37% Similarity=0.620 Sum_probs=220.2
Q ss_pred eEEEcCCceeEEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhccCChHHHHHHHhhc-CCCCcHHHHHHHH
Q 003860 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (791)
Q Consensus 532 ~i~~N~~~~gyyrv~Yd~~~w~~l~~~L~~~~~~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 610 (791)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987779999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 003860 611 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 690 (791)
Q Consensus 611 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~ 690 (791)
..|..+.+.+...++.....|++|+++++.++++++||+..+++++....+|..|+.+|| |+++|+++|+++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444459999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCc-Ccc
Q 003860 691 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 767 (791)
Q Consensus 691 ~~~~--~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~-v~~ 767 (791)
++.. ..|||++|.+|||++ +++|+.++|++++++|++++++.||..++.||||++||++++++|++++++. |+.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~---~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAG---VRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHH---TTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHHH---HHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7433 379999999888765 4589999999999999999999999999999999999999999999999985 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHh
Q 003860 768 QDAVYGLA-VS-IE--GRETAWKWLKV 790 (791)
Q Consensus 768 qd~~~~~~-v~-~~--g~~~~w~f~~~ 790 (791)
||+..++. ++ .+ |++++|+|+++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 99999988 76 55 99999999986
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.5e-34 Score=325.04 Aligned_cols=428 Identities=20% Similarity=0.283 Sum_probs=311.7
Q ss_pred eeeEEEEEE-ecCCCCeEEEEEEEEEEE-EcCCCEEEEEeCCceEeEEEEEeecCC---------------CCCcccC--
Q 003860 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKV---------------SSKALEP-- 76 (791)
Q Consensus 16 p~~Y~l~l~-~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~---------------~~~~~~~-- 76 (791)
-.|..+.|. +|+.+..+.|.++|++.. ..+...|+||++++.|.+|.|++..+. .+....+
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 999999999999999997 455899999999999999999875210 0000000
Q ss_pred -------eeEEEecCCeEEEEEeCCCCCC-c----eEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeccccCC-CCCCC
Q 003860 77 -------TKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (791)
Q Consensus 77 -------~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~ar 143 (791)
.-...+..++.|.|.++++++. | ..+++|.|+..=+..+--|++..|........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 0112344567899999988543 3 356778888654444445777665333222334444444 56799
Q ss_pred ceeeccCCCCCceEEEEEEEeCCCCeEeecCccccee--ecCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCCeEE
Q 003860 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK--VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (791)
Q Consensus 144 ~~fPc~DeP~~ka~f~i~i~~p~~~~~~sn~~~~~~~--~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v 221 (791)
.||||.|.+..+++|++++++|+..+++|+|.+.+.. .+-+.++++|.-+.|+++..+||+||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 9999999999999999999999999999999988762 23347899999999999999999999999873 2347899
Q ss_pred EEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHH
Q 003860 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (791)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (791)
..|+.|+.....+..--...++++|||+++|..|||+.+.+|++|....--|....|.+++.+ +||..+..+ .....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iID--q~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNIID--QTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhhh--HHHHH
Confidence 999999998888888889999999999999988999999999999877667777778888877 888776433 33446
Q ss_pred HHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhccccC----CCCceeeec
Q 003860 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHPIEVEV 377 (791)
Q Consensus 302 ~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~pi~~~~ 377 (791)
...+|--||.||||-.+|+..|+|.||.+|+|.|+..+++++++|..++.-+...+.-....+|-.. .+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 7789999999999999999999999999999999999999999998765433322222223333321 122332211
Q ss_pred C--------------CchhhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCC
Q 003860 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (791)
Q Consensus 378 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~ 443 (791)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+ +.++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~-----------------~~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVL-----------------ELASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHH-----------------HhhhhhH
Confidence 1 00000111111112477777788888888776655444433 3333333
Q ss_pred HHHHHHHhccCCCcceEEEEEe
Q 003860 444 VNKLMNSWTKQKGYPVISVKVK 465 (791)
Q Consensus 444 l~~~~~~W~~~~G~P~v~v~~~ 465 (791)
++.|++.|++..|+|++.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5788888888888888877743
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.35 E-value=5.2e-11 Score=127.13 Aligned_cols=302 Identities=16% Similarity=0.202 Sum_probs=183.5
Q ss_pred EEEEEEeCCCCeEeecCcccceeecCCeEEEE---EEcCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEeCCc-hhhH
Q 003860 158 FKITLDVPSELVALSNMPVIDEKVDGNMKTVS---YQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK-ANQG 233 (791)
Q Consensus 158 f~i~i~~p~~~~~~sn~~~~~~~~~~~~~~~~---f~~t~~mstyl~a~~vg~f~~~~~~~~~~~~v~v~~~~~~-~~~~ 233 (791)
+.+++.-|+ |.+.+..+.+.+... ...-.. |..+|.+ +|.|...+-. ..|.+.++-..... ..+.
T Consensus 115 ~~~~~~~p~-wriAT~L~~~~~~~~-~F~aa~~~~lvDSPve--------~g~~~~~~~e-~~g~ph~~~~~g~~p~~d~ 183 (558)
T COG3975 115 LELTVIPPE-WRIATALPPVATGRF-VFYAASYEELVDSPVE--------AGLFELLDFE-VTGAPHTIALRGELPNFDK 183 (558)
T ss_pred eEEEecCcc-ceeeecCCccccCCc-eeecccHHHhcCChhh--------ccccceeeee-ccCCceeEEEeeccccccH
Confidence 555655455 888877765543110 011111 2233332 3333333211 12344444333222 2356
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHH
Q 003860 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (791)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (791)
+...+.++++++.=.+.|| +-||.++.+++. .+-.+|||||-.-.........+.+ ....+....+++||..|-
T Consensus 184 ~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~----~~ky~~~l~llsHEyfH~ 258 (558)
T COG3975 184 ERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTD----QDKYQDLLGLLSHEYFHA 258 (558)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccccc----hhHHHHHHHHHHHHHHHh
Confidence 6677888999999999999 789999887764 5666889998654443333322211 122466789999999999
Q ss_pred HhcCccCcccc-----------chhHHhhhHHHHHHHHHhhhhC-CcchhHHHHHHHHHhhhhccccCCCCceeeecCCc
Q 003860 313 WFGNLVTMEWW-----------THLWLNEGFATWVSYLAADSLF-PEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHT 380 (791)
Q Consensus 313 WfGn~Vt~~~w-----------~d~WL~EGfA~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~ 380 (791)
|-+-.+.+.-- .-+|+.|||++|+..+..-... -+.+.....+.+...++..-..+-.+|+.....++
T Consensus 259 WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laEsS~~a 338 (558)
T COG3975 259 WNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAESSFDA 338 (558)
T ss_pred ccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccccccch
Confidence 99987776432 4599999999999977554321 11111112222223333322223233443222211
Q ss_pred h----hhhcc-ccccc--ccchhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCChHHHHHHHHhccCCCHHH
Q 003860 381 G----EIDEI-FDAIS--YRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPVNK 446 (791)
Q Consensus 381 ~----~~~~~-f~~i~--Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~s~~~l~~ 446 (791)
. ..+.. -+.+. |.||++|--+|...| |+..+...|+.+.+.+.. +..+++|+..++++++|.++..
T Consensus 339 wik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl~~ 418 (558)
T COG3975 339 WIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDLAT 418 (558)
T ss_pred hHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccHHH
Confidence 0 00111 12233 899999999988888 466788888888888766 6679999999999999999999
Q ss_pred HHHHhccCCCcceEEEEEeCcEEEEEEEe
Q 003860 447 LMNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (791)
Q Consensus 447 ~~~~W~~~~G~P~v~v~~~~~~~~l~Q~r 475 (791)
||+..+++.--|.+.---....+++++++
T Consensus 419 f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 419 FFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 99999998876665433333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.17 E-value=4e-11 Score=110.40 Aligned_cols=106 Identities=29% Similarity=0.488 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhccccCCCCceeeecC
Q 003860 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (791)
Q Consensus 299 ~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~ 378 (791)
..+..+++||++|+|+++.++.......|++||+|+|++... .. .+.......+..+....-.++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 446689999999999999998777788999999999999331 01 11112222333333333233322111
Q ss_pred CchhhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHH
Q 003860 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (791)
Q Consensus 379 ~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 418 (791)
. ...+....|.+|++++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33455678999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.49 E-value=0.0064 Score=64.72 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHhc--CccCcc--ccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhcc-ccCCCCc
Q 003860 298 KQRVATVVAHELAHQWFG--NLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHP 372 (791)
Q Consensus 298 ~~~~~~~iaHElaHqWfG--n~Vt~~--~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~p 372 (791)
...+..++|||+-|+=-- +.|... .-.|.|||||+|.-+|.++..+..+..+.. .......+..+ .....+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i---~d~R~~~y~~~~~~~~~~~ 212 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNI---RDSRIPYYNNYTSGNYNCS 212 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCcc---ccccHHHHhhccccCCCcc
Confidence 345789999999997632 234333 236899999999999999877764332110 00000111111 0111122
Q ss_pred eeeecCCchhhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCCHHHHHHH
Q 003860 373 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNS 450 (791)
Q Consensus 373 i~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-s~~~l~~~~~~ 450 (791)
+..- ... .-....|....++..-|....|.+.+++.|.. ....+..+..++..+ + .+.++.++|.+
T Consensus 213 l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~ 280 (366)
T PF10460_consen 213 LTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRR 280 (366)
T ss_pred eeec-CCC-----ccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2111 111 11235799999999999888899887766651 234567777666554 3 35689999999
Q ss_pred hccCC
Q 003860 451 WTKQK 455 (791)
Q Consensus 451 W~~~~ 455 (791)
|...-
T Consensus 281 w~~A~ 285 (366)
T PF10460_consen 281 WGVAL 285 (366)
T ss_pred HHHHH
Confidence 97655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.25 E-value=0.00018 Score=64.21 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcCccCc-----------cccchhHHhhhHHHHHHHHHhhhh
Q 003860 301 VATVVAHELAHQWFGNLVTM-----------EWWTHLWLNEGFATWVSYLAADSL 344 (791)
Q Consensus 301 ~~~~iaHElaHqWfGn~Vt~-----------~~w~d~WL~EGfA~y~~~~~~~~~ 344 (791)
...+++||..|.|-+-.+.| .--+.+|+-|||++|++.+.....
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 55789999999999755554 445679999999999998876554
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.89 E-value=0.11 Score=56.21 Aligned_cols=299 Identities=14% Similarity=0.120 Sum_probs=143.5
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECc--ccc-----eeeEEeecceeEEEecccccccccCCCCCCceEEEcCCce
Q 003860 468 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (791)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~ 540 (791)
+++++|+.....++..+..|.|||.+..-+ +.. ...+.++..++++.+.++. .. -..-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578899876666666667999999985433 222 1225678888999998642 22 4788999999
Q ss_pred eEEEEEcCH--HHHHHHHHHHHhcCCChhhHHHHH--------HHHHHHHHhcc-CCh-HHHHHHHhh-cC-CCCcHHHH
Q 003860 541 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFGIL--------DDHFALCMARQ-QTL-TSLLTLMAS-YS-EETEYTVL 606 (791)
Q Consensus 541 gyyrv~Yd~--~~w~~l~~~L~~~~~~~~~r~~li--------~D~~~la~~g~-l~~-~~~l~l~~~-l~-~E~~~~~w 606 (791)
.+.++.||- +.+..|.+. .-++.+|..-. .+...-..+|. ... ..+++.+.. |. .+-|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~----D~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH----DSDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc----CCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 999998873 333333332 11233332111 11111111110 111 124443333 21 22222222
Q ss_pred HHHH--HHHHHHHHHHhccChhH--------HHHHHHHHHHHHHHHHHHcCCccC---CCCCHHHHHHHHHHHHHHHhcC
Q 003860 607 SNLI--TISYKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLG 673 (791)
Q Consensus 607 ~~~~--~~l~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lr~~i~~~ac~~g 673 (791)
..++ -....|...+..-+|+. ...+-.-+...+..+|+++.-... ..+..-.+.||..++.+++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 2221 11122222211111221 122222233344445555511110 1223345899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 003860 674 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 753 (791)
Q Consensus 674 ~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll 753 (791)
.+...+.|.+.|+.-- + ---|-+.+.+++..-....++..+..+++|++....-+|.-.+.|.+... +.+
T Consensus 233 ~~~~~~la~~qy~~A~---n-----MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~--~~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSAD---N-----MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSP--DTL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSS---S-----HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--ST--THH
T ss_pred chHHHHHHHHHHHhCC---C-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCc--cHH
Confidence 9999999999998631 1 12333444444432222344557777888887777778888888876664 466
Q ss_pred HHHHHHhccCcC---ccccceeeee-ec-cc----------cHHHHHHHHH
Q 003860 754 LEVLNFLLSSEV---RSQDAVYGLA-VS-IE----------GRETAWKWLK 789 (791)
Q Consensus 754 ~~~L~~~l~~~v---~~qd~~~~~~-v~-~~----------g~~~~w~f~~ 789 (791)
.++-.+.-++.+ .|.-+..++. ++ .| |.+..-+.+.
T Consensus 303 ~~V~~L~~Hp~F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~GY~flad~I~ 353 (367)
T PF11940_consen 303 ERVKKLMQHPAFDLKNPNRVRALIGAFAQANPVQFHAADGSGYEFLADQII 353 (367)
T ss_dssp HHHHHHTTSTTTTTT-HHHHHHHHHHHHHC-HHHHT-TTSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcHHHHHHHHHHhcChhhhcCCCCcHHHHHHHHHH
Confidence 666665555532 3444556665 54 33 5566655554
No 16
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.24 E-value=0.07 Score=52.73 Aligned_cols=171 Identities=19% Similarity=0.267 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCCccEEEe--cCCCCc----ccccccceeeecccccccCCCchhHHHHHHHHHHHHH
Q 003860 236 ALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAG----AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 308 (791)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~-yP~~kld~v~~--p~~~~g----~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 308 (791)
+.....+++.+.++.|-.+ .+-+..+.|.+ .++..- |=.+-.-|.++...+ -..... ...+..+..++.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i-~~~~~~-~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYI-AKYPAD-GDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHH-hhcccc-cchHHHHHHHHHHH
Confidence 3445555666666666433 22334444432 333211 111123566665532 221111 22346789999999
Q ss_pred HHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhccccCCCCceeeecCCchhhhcccc
Q 003860 309 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFD 388 (791)
Q Consensus 309 laHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~ 388 (791)
++|-|=.+--.. .--||-||+|.|+-..+- ..|. ....|... ..++
T Consensus 104 ~~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~~---------~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGGG---------DSWD 149 (205)
T ss_pred HHHHhhcCCCCC---CChhheecHHHHHHHHcC--CCCc--------------------cccCCCCC---------CCcc
Confidence 999775443221 124899999999976521 0110 01111110 1223
Q ss_pred cccccchhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHH
Q 003860 389 AISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (791)
Q Consensus 389 ~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~~l~~~~~~ 450 (791)
-.|.-.|.+|.-|+. ..|+ .|.+-|..=+++..| +.+++|..+ +|+++.++.+.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~l---~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKEL---LGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHHH---HCcCHHHHHhh
Confidence 368888999999998 6654 466666666666555 456666554 58888888764
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.85 E-value=0.0052 Score=55.49 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCccC---ccccchhHHhhhHHHHHHHHHh
Q 003860 303 TVVAHELAHQWFGNLVT---MEWWTHLWLNEGFATWVSYLAA 341 (791)
Q Consensus 303 ~~iaHElaHqWfGn~Vt---~~~w~d~WL~EGfA~y~~~~~~ 341 (791)
.+++||-+||=..|.=- ...|- .||.||||+|+|-...
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P-~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWP-RWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCc-hHHHHhHHHHcCCCcc
Confidence 57999999999876421 12222 7999999999996654
No 18
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.83 E-value=2.1 Score=50.22 Aligned_cols=198 Identities=19% Similarity=0.196 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-hccCChHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHhccChhH
Q 003860 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL 627 (791)
Q Consensus 549 ~~~w~~l~~~L~~~~~~~~~r~~li~D~~~la~-~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~ 627 (791)
+.....|.+.+..++++..++++++.-+.+.++ .-.--.+.+++|++.=.-..+...+.+++-.+..+.+......+.+
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 346677777777788999999999887777763 3334444555555543344567888888888877766443322221
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhh
Q 003860 628 ----LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 703 (791)
Q Consensus 628 ----~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (791)
...+.+|+...+....++ . +..-+...+..++..|++..+... ..++.+ ....++.+|-
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~----~~~~~~~~LkaLGN~g~~~~i~~l----~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------G----DEEEIQLYLKALGNAGHPSSIKVL----EPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------C----CchheeeHHHhhhccCChhHHHHH----HHhcCC--CCCCCHHHHH
Confidence 234444444444432221 1 112256678889999998777553 444443 3457888997
Q ss_pred HhhheeeeccccCCHHHHHHHHHHHHcCCCHHH-HHH-HHHHhCCCCCHHHHHHHHHHhccC
Q 003860 704 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTR-ILSSLASCPDVNIVLEVLNFLLSS 763 (791)
Q Consensus 704 ~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-k~~-ll~aL~ct~d~~ll~~~L~~~l~~ 763 (791)
+...++.+.+.......-+.++..|.+...+.| |.. ++..|-|-++...|+++.+.+..+
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 555555443434567788899999998765544 554 445556669999999999888654
No 19
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.37 E-value=0.54 Score=46.45 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCc-----ccccccceeeecccccc-cCCCchhHHHHHHHHHHHHHHHHH
Q 003860 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (791)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g-----~mE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (791)
.+.+.+....+.| |.+++++.++|.-+.+ .+...|-..+....+++ -+. ......+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 3445555555554 4558888766533222 11123344444443444 222 123347889999999998
Q ss_pred HhcCccCc----cccchhHHhhhHHHHHHHHHhhhhC
Q 003860 313 WFGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 345 (791)
Q Consensus 313 WfGn~Vt~----~~w~d~WL~EGfA~y~~~~~~~~~~ 345 (791)
+--..+.. ..--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 64333321 1123567899999999977655544
No 20
>PRK04860 hypothetical protein; Provisional
Probab=89.57 E-value=0.85 Score=43.14 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc--cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 003860 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (791)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (791)
+...+...+..-+++||.|+|.|++.+-.- ...||+- .-+-|.|+.. ++.+. ....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~~-----~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLEN-----QQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhhC-----cHHHHHhHHHHHHHHHH
Confidence 445667777888899998888776544322 2224332 2333444433 22211 33567889999999987
Q ss_pred h
Q 003860 314 F 314 (791)
Q Consensus 314 f 314 (791)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 21
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=86.97 E-value=2.4 Score=42.09 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 003860 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (791)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (791)
.+.......++.|++.+|.++ +++.+=-.-. ..|....-|.|+|+-..+.+.+ .-+..+|+||+||.-.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhcc
Confidence 445666777788888888643 3433322222 2565555677888776333322 2478899999999876
Q ss_pred cCccCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHH
Q 003860 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 354 (791)
Q Consensus 315 Gn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~ 354 (791)
-|. -..+| ..+++..|+|......
T Consensus 178 ~nH-----s~~Fw-----------~~v~~~~Pd~k~~~~~ 201 (205)
T PF01863_consen 178 PNH-----SKRFW-----------ALVEKYMPDYKERRKW 201 (205)
T ss_pred CCC-----CHHHH-----------HHHHHHCcCHHHHHHH
Confidence 553 33333 2445667887654433
No 22
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=86.81 E-value=0.66 Score=48.97 Aligned_cols=40 Identities=35% Similarity=0.422 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhh
Q 003860 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (791)
Q Consensus 299 ~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (791)
..++.+|-||+|||=+ -.+ +|.=+||+||++.+...+.+.
T Consensus 163 ~~LA~LIfHELaHq~~----Yv~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 163 GELARLIFHELAHQTL----YVK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred hHHHHHHHHHHhhcee----ecC--CCchhhHHHHHHHHHHHHHHH
Confidence 3689999999999943 222 366689999999998877655
No 23
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=84.26 E-value=1.1 Score=44.82 Aligned_cols=40 Identities=33% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhh
Q 003860 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (791)
Q Consensus 299 ~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (791)
..++.+|-||+|||=|.-- +|.=+||+||+..|...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 4689999999999966421 456689999999998877664
No 24
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.95 E-value=15 Score=43.45 Aligned_cols=200 Identities=17% Similarity=0.126 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHH-HhccCChHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHhccC----
Q 003860 550 DLAARLGYAIEMKQLSETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR---- 624 (791)
Q Consensus 550 ~~w~~l~~~L~~~~~~~~~r~~li~D~~~la-~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~---- 624 (791)
.....|.+.+..+.++....++++--+...+ +.-.--.+.+++|++.-.-..+..++.+++-.+..+.+......
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 4556667777677888887777765555444 22211222233333332234566788888877777665543320
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchh
Q 003860 625 ---PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDI 701 (791)
Q Consensus 625 ---~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~l 701 (791)
+......++++..+.. .+... . +..+..-+...|..++.+|++..+.. +..++.+ ....|..+
T Consensus 475 ~~~~~~~~~~~~~~~~l~~-~l~~~---~----~~~~~~~~~~~LkaLgN~g~~~~i~~----l~~~i~~--~~~~~~~~ 540 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQ-ELKEA---V----SRGDEEEKIVYLKALGNLGHPESIPV----LLPYIEG--KEEVPHFI 540 (618)
T ss_dssp ------SS--GGGTHHHHH-HHHHH---H----HTT-HHHHHHHHHHHHHHT-GGGHHH----HHTTSTT--SS-S-HHH
T ss_pred cccccchhhHHHHHHHHHH-HHHHH---h----hccCHHHHHHHHHHhhccCCchhhHH----HHhHhhh--ccccchHH
Confidence 1111122222222221 11110 0 01123456677888889998865544 4455555 23688999
Q ss_pred hhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHH-HHHH-HHHhCCCCCHHHHHHHHHHhccC
Q 003860 702 RKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRI-LSSLASCPDVNIVLEVLNFLLSS 763 (791)
Q Consensus 702 r~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-k~~l-l~aL~ct~d~~ll~~~L~~~l~~ 763 (791)
|-+...++.+.+..-.....+.++..|.+.+...| |... +..|-|-++...|+++.+.+-.+
T Consensus 541 R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E 604 (618)
T PF01347_consen 541 RVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNE 604 (618)
T ss_dssp HHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhC
Confidence 98666565543444566789999999998776555 4443 34445669999999998877543
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=81.40 E-value=1.9 Score=40.38 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEecCC--CCccccc-ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 003860 242 KTLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (791)
Q Consensus 242 ~~l~~~e-~~fg~~yP~~kld~v~~p~~--~~g~mE~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (791)
+.++.++ .+|+-++|-++ +...... ..|.-.. .+.|.++.. |.. ......+..+|.||+||.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~--i~w~~r~~~~~G~~~~~~~~I~ln~~--l~~-----~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPK--VVWNKRLRKTGGRCLLKSAEIRLNPK--LLT-----ENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCE--EEEehhhhhhhHHhhcCCCEEEeCHH--HHh-----hccHHHHHhhHHHHHHHHHHH
Confidence 3444455 78987777652 2222221 1232221 334444443 111 112345778999999999964
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=72.03 E-value=8.1 Score=32.05 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHH
Q 003860 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 738 (791)
Q Consensus 659 ~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~ 738 (791)
...|..++..+|..+++..+....+++ ++ -++..|..+..++.. .|+.+..+.|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467888999999998876666555544 33 247888866665543 567788999999888877766688
Q ss_pred HHHHHhC
Q 003860 739 RILSSLA 745 (791)
Q Consensus 739 ~ll~aL~ 745 (791)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 27
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=69.01 E-value=23 Score=30.44 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=33.8
Q ss_pred cCCCEEEEEeC-Cce--EeEEEEEeecCCCCCcccCeeEEEecCCeEEEEEeCCCCCCceEEEEEEEE
Q 003860 44 GDTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFE 108 (791)
Q Consensus 44 ~~~~~i~L~~~-~l~--i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~ 108 (791)
.+...|.|... .++ ...+.|.+..+ ..+.......+.....+++.++.+|++|.|+|.-+--
T Consensus 17 ~~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvv 81 (97)
T PF04234_consen 17 AAPEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVV 81 (97)
T ss_dssp S--SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEE
T ss_pred cCCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEE
Confidence 34566777775 344 67777765433 2233333444445679999999999999988765443
No 28
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=68.46 E-value=5.2 Score=42.68 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhh
Q 003860 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (791)
Q Consensus 301 ~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (791)
.-.++|||+|||= | ...|.=|+|+++++..+-
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s 227 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACINS 227 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC
Confidence 5578999999994 2 248999999999876543
No 29
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=66.71 E-value=11 Score=35.47 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCC---Ccccccccceeeecccc-cccCCCchhHHHHHHHHH
Q 003860 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (791)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--ld~v~~p~~~---~g~mE~~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 304 (791)
..+..|...+.++.+||.+.|| .=++.. ..++..-.+. ..|.-+-..++|..-.- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 3455677788999999999999 556653 3344332211 12332223334433211 11111 112468
Q ss_pred HHHHHHHH
Q 003860 305 VAHELAHQ 312 (791)
Q Consensus 305 iaHElaHq 312 (791)
+|||++|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 30
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=63.80 E-value=11 Score=36.97 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhh
Q 003860 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (791)
Q Consensus 301 ~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~ 343 (791)
...++|||+.|-|.- ..-----+.++-||+++.+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 457899999999962 11111225789999999999987764
No 31
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=61.52 E-value=2.8e+02 Score=33.67 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCcc-CccccchhHHhhhHHHHHHHHHhhhhCC---cchh-H--HHHHHHHHhhhhccccCCCCceee
Q 003860 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI-W--TQFLDECTEGLRLDGLAESHPIEV 375 (791)
Q Consensus 303 ~~iaHElaHqWfGn~V-t~~~w~d~WL~EGfA~y~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~d~~~~~~pi~~ 375 (791)
-.+-|||+|..=+..+ .-..+.+.| |-=+|.++++..+..... .|-+ . .......+.+.- + ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~i-~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIALI-D---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHHH-h---cCCC---
Confidence 4689999999988887 444566888 778888888776542111 1111 0 001111111100 0 0011
Q ss_pred ecCCchhhhccccccc-ccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHhc-cCCCHHHHHHHh
Q 003860 376 EVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 451 (791)
Q Consensus 376 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~--~~~df~~~l~~~-s~~~l~~~~~~W 451 (791)
|+... -.|=..+..|+...-|++.|+..=+.|=+. .-.+. ..-++++-+... ++.|+.++++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 22221 234445555788889999998887777665 22222 222334455555 899999999988
No 32
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=57.32 E-value=8.1 Score=38.82 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccc-c---ceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCc
Q 003860 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY-G---LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 317 (791)
Q Consensus 242 ~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~-g---li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~ 317 (791)
+.++-+-+..|.+.|.+++-++-.|.. .|.-.. | .|..... ++. . .....+..++|||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~~--NA~~~g~~~~~~I~v~~~-ll~-~-----~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPSP--NAFATGGGPRKRIVVTSG-LLE-S-----LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SSE--EEEEETTTC--EEEEEHH-HHH-H-----SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCC--cEEEEccCCCcEEEEeCh-hhh-c-----ccHHHHHHHHHHHHHHHHcCCc
Confidence 333333444455666555555544442 332221 1 2444444 332 1 2344688999999999988765
Q ss_pred cCc
Q 003860 318 VTM 320 (791)
Q Consensus 318 Vt~ 320 (791)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 444
No 33
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=57.31 E-value=48 Score=33.37 Aligned_cols=93 Identities=22% Similarity=0.345 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 003860 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (791)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (791)
+.+.+.....+..|.+.+|.++.--++. ..-. -.|.-...|-|.++-. +.. ....-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~-l~~-------~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWR-LVM-------APEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehh-hhc-------CCHHHHHHHHHHHHHHHh
Confidence 3556677777888899999765532222 1111 1233333333444332 111 123457889999999998
Q ss_pred hcCccCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHH
Q 003860 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (791)
Q Consensus 314 fGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 353 (791)
..|. +++.|+ .++.++|++.....
T Consensus 188 e~nH-s~~Fw~---------------lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SKRFWR---------------LVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cHHHHH---------------HHHHHCCChHHHHH
Confidence 8873 333332 44566788765544
No 34
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=54.48 E-value=39 Score=31.55 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=33.2
Q ss_pred cccCeeEEEecCCeEEEEEeCCCCCCceEEEEEEEEeeeCCCCcceEE
Q 003860 73 ALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYR 120 (791)
Q Consensus 73 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~ 120 (791)
.+....+..+.++..+.|.+++|++|| -+++|.+.+.-+....|.|.
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEE
Confidence 344466888889999999999999999 34445554444445567765
No 35
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=53.66 E-value=82 Score=34.27 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHHHHHhc-cCChHHHHHHHhhcCCCCcH--------HHHHHH----HHHHHHHHHHHhccChhHHH-HH
Q 003860 566 ETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 631 (791)
Q Consensus 566 ~~~r~~li~D~~~la~~g-~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 631 (791)
+.+|.++|+|+....-++ .++|.+=|.+++.-++|-.+ .+|... ..-|..|.+.+..+ |+... .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 679999999996655444 56999999998887776554 445433 12234445555432 22221 23
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhcCCCCCCCCchhhhH
Q 003860 632 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 704 (791)
Q Consensus 632 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~~ 704 (791)
..|+.+++.. ....+|. |+..|...|.+ +|...|...|+.|.. ..+|+++-++
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQA 444 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQA 444 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHHH
Confidence 3344433331 2334555 55678888977 999999999999974 3578877663
No 36
>PRK04351 hypothetical protein; Provisional
Probab=53.57 E-value=16 Score=34.18 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 003860 298 KQRVATVVAHELAHQW 313 (791)
Q Consensus 298 ~~~~~~~iaHElaHqW 313 (791)
...+..+|+||++|-.
T Consensus 58 ~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 58 LEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4568899999999953
No 37
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=52.46 E-value=15 Score=40.57 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHH
Q 003860 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (791)
Q Consensus 256 P~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (791)
|-..++++.|-+-...|--.+|.-++-.+.++...+ ....++.+||||++|-
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv 141 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHV 141 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHH
Confidence 334578888866555555555544433333433222 2346899999999995
No 38
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=51.94 E-value=30 Score=32.51 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 003860 298 KQRVATVVAHELAHQWFG 315 (791)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (791)
...+..+|.||++|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456889999999999974
No 39
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=51.50 E-value=15 Score=32.31 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 003860 300 RVATVVAHELAHQWFGNLV 318 (791)
Q Consensus 300 ~~~~~iaHElaHqWfGn~V 318 (791)
+...+++|||+|.+++..-
T Consensus 41 ~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 41 RQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 3467999999999987654
No 40
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=47.33 E-value=1.2e+02 Score=33.19 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH
Q 003860 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 359 (791)
Q Consensus 303 ~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~ 359 (791)
-.|..+.| |+|..-...+ -+|||-|+|..+.++.+++.+...-..++.+.+
T Consensus 251 l~ivR~ea-~YF~PQ~qTk-----VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 251 LRIVRKEA-QYFYPQRQTK-----VMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHH-HHhcchHHHH-----HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 34455544 4554433332 489999999999999988877666555554443
No 41
>PRK09687 putative lyase; Provisional
Probab=46.06 E-value=3.7e+02 Score=28.09 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHH
Q 003860 660 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 739 (791)
Q Consensus 660 ~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ 739 (791)
..|..++..++..+++..+....+. ++++ ++++|.+.-.++.. +..++...-+.|....... +..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~----L~d~-----~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~D~-~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINL----LKDP-----NGDVRNWAAFALNS-NKYDNPDIREAFVAMLQDK-NEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHH----hcCC-----CHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCC-ChHHHHH
Confidence 5677777777777776655544433 3331 34677633222221 1234556666666666433 4556788
Q ss_pred HHHHhCCCCCHHHHHHHHHHhccCc
Q 003860 740 ILSSLASCPDVNIVLEVLNFLLSSE 764 (791)
Q Consensus 740 ll~aL~ct~d~~ll~~~L~~~l~~~ 764 (791)
.+.+||...++..+..+++.+-++.
T Consensus 212 A~~aLg~~~~~~av~~Li~~L~~~~ 236 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKELKKGT 236 (280)
T ss_pred HHHHHHccCChhHHHHHHHHHcCCc
Confidence 8888888888887777777754433
No 42
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=45.46 E-value=23 Score=39.09 Aligned_cols=111 Identities=23% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCCCcccccccceeeecccccccCCCchhH-HHHHHHH
Q 003860 227 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAA-NKQRVAT 303 (791)
Q Consensus 227 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--ld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~-~~~~~~~ 303 (791)
++....+..|-..+.+..+||.++||. --++. +.++..--| | -++.-.......++|.......- .......
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr-~S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGR-NSYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhcc-cCcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccc
Confidence 333445566777889999999999993 34443 333433222 2 12222233334455543321110 0111246
Q ss_pred HHHHHHHHHHhc---CccCccccchhHHhhhHHHHHHHHHhhhh
Q 003860 304 VVAHELAHQWFG---NLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (791)
Q Consensus 304 ~iaHElaHqWfG---n~Vt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (791)
++||||.|.--. +++.-..- -=|||+|+.-+.-.+....
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 899999996544 44443322 2489999999986554433
No 43
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=45.43 E-value=79 Score=30.83 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCc
Q 003860 295 AANKQRVATVVAHELAHQWFGNL 317 (791)
Q Consensus 295 ~~~~~~~~~~iaHElaHqWfGn~ 317 (791)
.-....+..++.|||||.++|+-
T Consensus 76 fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 76 FLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred EeeHHHHHHHHHHHHHhcccCCc
Confidence 34456789999999999999884
No 44
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=43.64 E-value=65 Score=29.02 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=36.1
Q ss_pred CEEEEEeCC---ceEeEEEEEeecCCCCCcccCeeEEEecCC-eEEEEEeCCCCCCceEEEEEEEEe
Q 003860 47 KFIVLNAAD---LTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (791)
Q Consensus 47 ~~i~L~~~~---l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l~~g~~~l~i~y~g 109 (791)
..|.|++.+ ..+..+.+.+.++ ..+.....+.+..+ ..++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 356676652 3346666665322 12222233333333 459999999999999998877654
No 45
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=37 Score=35.82 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=40.6
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccc---cceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccC
Q 003860 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (791)
Q Consensus 245 ~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt 319 (791)
.-....-|.+ +.+++.++..|....-++... |.|...+. ++ +. .+...+..+++||++|.=-++.+.
T Consensus 106 ~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 106 AELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-DL-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 3334445533 346676666665555555553 67766655 33 21 234468999999999987776554
No 46
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=42.35 E-value=35 Score=28.10 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCC--cccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 003860 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (791)
Q Consensus 243 ~l~~~e~~fg~~yP~~kld~v~~p~~~~--g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (791)
+...+|..||.+ +.+..+-.-|.-.. ..|. +--++.... +.+.+..-.. ....-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~-~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNP-DSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCC-CCCCcchhHhHHHHHHH
Confidence 456789999954 66655544332111 1111 122333443 3332211000 00113478999999964
No 47
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=40.00 E-value=15 Score=31.68 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 003860 300 RVATVVAHELAHQW 313 (791)
Q Consensus 300 ~~~~~iaHElaHqW 313 (791)
....+++||++|-|
T Consensus 78 GC~~TL~HEL~H~W 91 (141)
T PHA02456 78 GCRDTLAHELNHAW 91 (141)
T ss_pred chHHHHHHHHHHHH
Confidence 46678999999999
No 48
>PRK01345 heat shock protein HtpX; Provisional
Probab=39.38 E-value=53 Score=35.09 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (791)
..++++.+.+..|+| .+++-++-.+....-+... -+.|.+.+. ++-. .+...+..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 455666677778865 4565444333222222221 124544443 3221 123568999999999976554
No 49
>PRK03982 heat shock protein HtpX; Provisional
Probab=38.88 E-value=71 Score=33.62 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-----cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (791)
..+.++-+.+..|+| .+++-++ |+-...|+- .-|.|...+. ++ +. .+...+..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-NL-----LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHHc
Confidence 445555566667754 4555444 322222221 1234444443 22 11 1345689999999999755
Q ss_pred cC
Q 003860 315 GN 316 (791)
Q Consensus 315 Gn 316 (791)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 50
>PRK05457 heat shock protein HtpX; Provisional
Probab=38.84 E-value=60 Score=34.09 Aligned_cols=68 Identities=28% Similarity=0.433 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCC---cccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAA---GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~---g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (791)
..+.++-+.+..|+ |.|++-++-.+.... |.-.+-+.|.+... ++- .-+...+..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ------NMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh------hCCHHHHHHHHHHHHHHHHcCC
Confidence 34555666777775 577776665433222 21122234555443 221 1133568999999999976655
No 51
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=37.62 E-value=96 Score=31.21 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhccCChHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcC
Q 003860 568 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 647 (791)
Q Consensus 568 ~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 647 (791)
-|.+++.=...+.+.|.++.+.+.+++..|-.|-+..|-.......+.+.+.++..+... ..+.+-+=+.+..+..+ +
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~~-~~~ldLlP~~Ls~L~~~-~ 81 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNKN-GKWLDLLPKCLSALSAS-E 81 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTTTHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCccc-chHHHHHHHHHHHHhcC-c
Confidence 467788888889999999999999999999999999998888877777666665322111 12222222222222222 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 003860 648 WDSKPGESHLDALLRGEIFTALALLGH-KETLNEASKRFHA 687 (791)
Q Consensus 648 ~~~~~~~~~~~~~lr~~i~~~ac~~g~-~~c~~~A~~~f~~ 687 (791)
--...++...-...+..++.-.|...= +.|+-....+|++
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd 122 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRD 122 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Confidence 111122333457888888888888763 4566555566654
No 52
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=37.61 E-value=57 Score=26.85 Aligned_cols=19 Identities=26% Similarity=0.775 Sum_probs=12.7
Q ss_pred HHHHHHHHHHH-HHHHHhcC
Q 003860 298 KQRVATVVAHE-LAHQWFGN 316 (791)
Q Consensus 298 ~~~~~~~iaHE-laHqWfGn 316 (791)
...+..+|.|| +-|-||--
T Consensus 61 ra~lr~~iiheelhhrw~~r 80 (109)
T PF15641_consen 61 RAELRNTIIHEELHHRWWKR 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34466777776 77788753
No 53
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.35 E-value=3.1e+02 Score=30.73 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=44.9
Q ss_pred EecCCCCeEEEEEEEEEEEEcC--CCEEEEEeCC---ceEeEEEEEeecCCCCCcc--cCeeEEEecCCeEEEEEeCCCC
Q 003860 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKAL--EPTKVELVEADEILVLEFAETL 96 (791)
Q Consensus 24 ~~d~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~l~~~l 96 (791)
.+|+.+....=++.|+++...+ .+...+-... -.+..+.+........... ...++.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4556565666666777776543 3444443332 2233333332211110111 1112222223356899999999
Q ss_pred CCc-eEEEEEEEEe
Q 003860 97 PTG-MGVLAIGFEG 109 (791)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (791)
+|| +.+|.++|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888763
No 54
>PRK10301 hypothetical protein; Provisional
Probab=37.10 E-value=2.3e+02 Score=25.55 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCeEEEEEeCCCCCCceEEEEEEEEe
Q 003860 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (791)
Q Consensus 84 ~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (791)
+...+.+.++.+|++|.|+|+-+--+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34567888888899998887654433
No 55
>PRK04897 heat shock protein HtpX; Provisional
Probab=36.73 E-value=49 Score=35.03 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccc---ccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~m---E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (791)
..+.++-+.+..|+ |.|++-++-.+....-+. .+-+.|.+... ++- .-+.+.+..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 45566666777775 566776554332221111 12234444432 221 1123568999999999965443
No 56
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=36.54 E-value=1.2e+02 Score=29.58 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 003860 300 RVATVVAHELAHQW 313 (791)
Q Consensus 300 ~~~~~iaHElaHqW 313 (791)
..+.++|||++|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999986
No 57
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=36.21 E-value=23 Score=34.11 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 003860 301 VATVVAHELAHQW 313 (791)
Q Consensus 301 ~~~~iaHElaHqW 313 (791)
-..++|||++||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 58
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=36.03 E-value=1.8e+02 Score=31.50 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHH-H----------
Q 003860 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-H---------- 311 (791)
Q Consensus 243 ~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-H---------- 311 (791)
+=++..+|++ .. --++.+...++...+||-.-+-|.++.+.. ....++..++.||+. |
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccccC
Confidence 3345566666 32 224555555778777776555555555422 234568899999994 5
Q ss_pred --HHhcCccCccccchhHHhhhHHHHHHHHH
Q 003860 312 --QWFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (791)
Q Consensus 312 --qWfGn~Vt~~~w~d~WL~EGfA~y~~~~~ 340 (791)
.|++...-+. .=..||+|.+.|++.
T Consensus 187 Pl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 2333221111 113799999999774
No 59
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=35.97 E-value=47 Score=32.84 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=19.4
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHhcCcc
Q 003860 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLV 318 (791)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGn~V 318 (791)
+|++........-.+-.+|||||.|-.-...+
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~ 53 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGI 53 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34444444445556788999999997744333
No 60
>PRK02870 heat shock protein HtpX; Provisional
Probab=32.71 E-value=85 Score=33.79 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHH
Q 003860 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (791)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (791)
.++++-+....|+|+ .|++-++-.+....-++. .-+.|.+.+. ++ +. .+...+..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 344445555567543 355544433322222221 2245555544 32 11 13456899999999996
No 61
>PRK03001 M48 family peptidase; Provisional
Probab=32.69 E-value=77 Score=33.24 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~---~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (791)
..+.++-+.+..|+| .|++-++-.+... .|.-.+.+.|...+. ++ +. -....+..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLP--MPKVYLINEDQPNAFATGRNPEHAAVAATTG-IL-RV-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEecCCCcceEEecCCCCCeEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhCCC
Confidence 445666667777865 4555443222111 111111233444443 22 11 124568999999999975443
No 62
>PRK03072 heat shock protein HtpX; Provisional
Probab=32.37 E-value=89 Score=32.90 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-cc--cceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 003860 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-NY--GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (791)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE-~~--gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (791)
...+.++-+.+..|+ |.|++-++-.+....-+.. ++ +.+..... ++ +. .+...+..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345666667777785 4667655543332211111 11 12333322 32 11 13456899999999996544
Q ss_pred C
Q 003860 316 N 316 (791)
Q Consensus 316 n 316 (791)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 63
>PRK02391 heat shock protein HtpX; Provisional
Probab=31.95 E-value=91 Score=32.98 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (791)
..+.++.+.+..|+| .|++-++-.+....-+.. .-+.|.+.+. ++ +. -+...+..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LM-RR-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHHcCC
Confidence 345555566777764 566665544332222211 1233444333 22 11 123468899999999976554
No 64
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=29.90 E-value=1.2e+02 Score=24.29 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 003860 395 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (791)
Q Consensus 395 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s~~ 442 (791)
=+.++.+|...++.+.+ ..|..++++++-+-++-++|...+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36789999999998885 456777778888889999999999988883
No 65
>PF13205 Big_5: Bacterial Ig-like domain
Probab=29.41 E-value=3.4e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.1
Q ss_pred cCCeEEEEEeCCCCCCc-eEEEEEEEE
Q 003860 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (791)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~ 108 (791)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56689999999999999 999998544
No 66
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=28.48 E-value=2.1e+02 Score=26.71 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=24.1
Q ss_pred eEEEEEEeCCch---hhHHHHHHHHHHHHHHHHHHhCCC
Q 003860 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVP 254 (791)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~ 254 (791)
.++++|..+... .......+.+.+++..+++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 467888877542 234456778888888888876533
No 67
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=39 Score=35.43 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 003860 297 NKQRVATVVAHELAHQWFGN 316 (791)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGn 316 (791)
+...++.+++||+|||=-+.
T Consensus 271 ~ddglAtvLgHE~aHaVarH 290 (424)
T KOG2661|consen 271 DDDGLATVLGHEIAHAVARH 290 (424)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34568999999999997654
No 68
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=28.41 E-value=1.4e+02 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.9
Q ss_pred cCCeEEEEEeCCCCCCceEEEEEEE
Q 003860 83 EADEILVLEFAETLPTGMGVLAIGF 107 (791)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~y 107 (791)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677778878999999999988
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.35 E-value=77 Score=25.93 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=46.1
Q ss_pred CchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 003860 698 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 763 (791)
Q Consensus 698 ~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~ 763 (791)
++..|..+..+++ +.++.+.-+.+.+.. +..++.-|.....+||...++..+..+..++.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 5677765444443 356677777788877 5678889999999999999999888888876654
No 70
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=27.94 E-value=90 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccE
Q 003860 240 AVKTLELYKEYFAVPYSLPKLDM 262 (791)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~ 262 (791)
..+.++-.+..|+-+||.++...
T Consensus 7 L~~~~~~as~~~~r~~~~p~~~~ 29 (156)
T COG3091 7 LQQCVEQASLKFFRKFFRPKASY 29 (156)
T ss_pred HHHHHHHHHHHhcCCCCCcceeh
Confidence 34455555555555899887643
No 71
>PRK01265 heat shock protein HtpX; Provisional
Probab=27.59 E-value=1.1e+02 Score=32.65 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 003860 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (791)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (791)
.+.++-+.+..|+ |.|++-++-.+....-+... -+-|...+. ++ +. .+...+..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 4555566667775 46666555433221111111 133444433 22 11 13456899999999995333
No 72
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=26.72 E-value=1.3e+02 Score=31.83 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCccEEEecCCCCcccc-cccceeeecccccccCCCchhHHHHHHH
Q 003860 232 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 302 (791)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP--------~~kld~v~~p~~~~g~mE-~~gli~~~e~~ll~~~~~~~~~~~~~~~ 302 (791)
+.+..++...++++...++.|.+.+ .++..+|.-+..+.|.|- ..+-|.+..... +.- -.......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~~--~~~-l~~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNWM--NEL-LNPNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHH-H-HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcHH--hcc-cCHhHcCCCC
Confidence 3556677888899999999998874 223377777777777777 333444443210 000 0000111134
Q ss_pred HHHHHHHHHHHhcCccCccccchhHHhhhHHHHHHHHHhhhhCC
Q 003860 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (791)
Q Consensus 303 ~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~~ 346 (791)
-.+.||+.|+- -..+=-|.. +-|.-...++........+
T Consensus 221 WG~~HE~GH~~---Q~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNH---QQGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhc---CccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 57999999984 222111333 6777777777766665543
No 73
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=26.32 E-value=36 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=22.8
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCChHHH
Q 003860 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDL 432 (791)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df 432 (791)
.++.+||++.|....+.|++++.-.+.+..++
T Consensus 54 ~~~~llG~~~f~~la~~y~~~~p~~s~~l~~~ 85 (94)
T PF09836_consen 54 VVRALLGEEFFDALARAYIRAHPSRSPDLNDY 85 (94)
T ss_dssp TGGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 34567899999999999999988666554443
No 74
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=1.5e+02 Score=35.38 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=44.7
Q ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCC--------Ccccccc----cceeeeccccc
Q 003860 220 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--------AGAMENY----GLVTYRETALL 287 (791)
Q Consensus 220 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~--------~g~mE~~----gli~~~e~~ll 287 (791)
.+++|..++.....+.+.+.....+.+=..++...-|.+-..++..-.|. .|+|=+. |++.+.+.
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 46788888877666666666666666666656533344443333321221 2344332 22222222
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHH
Q 003860 288 YDDQHSAAANKQRVATVVAHELAHQ 312 (791)
Q Consensus 288 ~~~~~~~~~~~~~~~~~iaHElaHq 312 (791)
.....+.++||||+|.
T Consensus 319 ---------~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 ---------ILLAFAVVLAHELGHN 334 (716)
T ss_pred ---------cchhHHHHHHHHHHhh
Confidence 1234788999999995
No 75
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=24.36 E-value=3.7e+02 Score=28.91 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003860 664 EIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 743 (791)
Q Consensus 664 ~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~a 743 (791)
-|-..+++.+..+-....++.+. .+|++...+ +|..+.++. -+++--+.+.++...+.+......+++|
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~---------~lP~~vl~a-L~~~LEh~~-l~~~l~~~l~~~~~~~~d~~~~~a~lRA 239 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALP---------HLPPEVLYA-LCGCLEHQP-LPDKLAEALLERLEQAPDLELLSALLRA 239 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHh---------hCChHHHHH-HHHHhcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666777776653333222222 134433332 233333332 3666788888888888888889999999
Q ss_pred hCCCCCHHHHHHHHHHhccC-cCccccc
Q 003860 744 LASCPDVNIVLEVLNFLLSS-EVRSQDA 770 (791)
Q Consensus 744 L~ct~d~~ll~~~L~~~l~~-~v~~qd~ 770 (791)
||++....+....+..+|++ .....|+
T Consensus 240 ls~~~~~~~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 240 LSSAPASDLVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred HcCCCchhHHHHHHHHHhcCcccCChHH
Confidence 99999998888878888866 3444554
No 76
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=24.33 E-value=2.8e+02 Score=26.69 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCccCccc
Q 003860 297 NKQRVATVVAHELAHQWFGNLVTMEW 322 (791)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGn~Vt~~~ 322 (791)
.+..+..+++|||.|.|=--..-++|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34568899999999998544444444
No 77
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.86 E-value=6.8e+02 Score=29.13 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 003860 731 TDLSQEKTRILSSLASCPDVNIVLEVLNFLL 761 (791)
Q Consensus 731 ~~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l 761 (791)
..+..++..+|+|||....+..+..+..++.
T Consensus 457 ~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~ 487 (574)
T smart00638 457 KGDEEEIQLYLKALGNAGHPSSIKVLEPYLE 487 (574)
T ss_pred cCCchheeeHHHhhhccCChhHHHHHHHhcC
Confidence 3445556666666666666666655555543
No 78
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=23.25 E-value=1.8e+02 Score=29.08 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 003860 301 VATVVAHELAHQW 313 (791)
Q Consensus 301 ~~~~iaHElaHqW 313 (791)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 79
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=23.09 E-value=3.4e+02 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=20.2
Q ss_pred CCeEEEEEeCCCCCCceEEEEEE--EEe
Q 003860 84 ADEILVLEFAETLPTGMGVLAIG--FEG 109 (791)
Q Consensus 84 ~~~~l~i~l~~~l~~g~~~l~i~--y~g 109 (791)
....|.+.+|..|+.|.|+|.|. |.+
T Consensus 62 ~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 62 KPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCcEEEEECcCccCceEEEEEEEEEecC
Confidence 34578888999999999887774 554
No 80
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=21.12 E-value=2.6e+02 Score=27.45 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=66.0
Q ss_pred eccCCCCCceEE---EEEEEe-----CCCCeEeecCcccceeecCCeEEEEEEcCCCCcceEEEEEEeeeeEeeccccCC
Q 003860 147 PCWDEPACKATF---KITLDV-----PSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDG 218 (791)
Q Consensus 147 Pc~DeP~~ka~f---~i~i~~-----p~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~~ 218 (791)
-|-++|..|..| +|.|.+ |..+.++|.....+...-+.|+.+.-..-+. .. ...-|
T Consensus 89 a~R~~~q~kGefaGDK~HiSV~~~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~q---------------qs-RV~~G 152 (241)
T PRK15245 89 ARRESPQSKGDFAGDKFHISVARDQVPQAFQALSGLLFSEDSPVDKWKVTDMERVSQ---------------QS-RVGLG 152 (241)
T ss_pred ecccCccccccccCceEEEEecHHHHHHHHHHhhhhhcCCCCCcceeeeccccccCc---------------cc-hhccc
Confidence 345667666555 455544 4456677655444333334455543332211 11 22337
Q ss_pred eEEEEEEeCCchh--hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecc
Q 003860 219 IKVRVYCQVGKAN--QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284 (791)
Q Consensus 219 ~~v~v~~~~~~~~--~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g~mE~~gli~~~e~ 284 (791)
.++..|..|+.++ .....|..+...++.+|..++.. - +.==..|.- .-.-|||..+.||.+
T Consensus 153 AQfTLYvKpd~edsqYsa~~l~k~r~Fie~lE~~L~~~-g---i~pG~~P~S-DV~pe~W~y~SYRNE 215 (241)
T PRK15245 153 AQFTLYVKPDQENSQYSASFLHKTRQFIECLESRLSEN-G---VISGQCPES-DVHPENWKYLSYRNE 215 (241)
T ss_pred ceEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHc-C---CCCCCCCcc-ccCccccceeeehhh
Confidence 8999999988753 23455788899999999988611 0 000001222 124589999999976
No 81
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=20.34 E-value=1.2e+02 Score=29.86 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 003860 299 QRVATVVAHELAHQ 312 (791)
Q Consensus 299 ~~~~~~iaHElaHq 312 (791)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45788999999995
No 82
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=20.01 E-value=7.7e+02 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=25.1
Q ss_pred EEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCc
Q 003860 21 IRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADL 56 (791)
Q Consensus 21 l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l 56 (791)
|++..+.+..+++|.+++.- -.+|++.|.++..-+
T Consensus 35 l~~~~d~~~i~vsGn~t~~w-di~P~DrI~~~~~~~ 69 (164)
T smart00675 35 LVVDMDPDGLHISGNITVIW-DVQPTDRISARVSVM 69 (164)
T ss_pred eEEEEcCCeEEEeeeEEEEE-ecCCCCeEEEEEEEE
Confidence 33445777889999999876 446788888866533
Done!