Query 003861
Match_columns 791
No_of_seqs 413 out of 2596
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 13:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 1.9E-78 4.1E-83 711.0 67.4 552 112-699 5-558 (621)
2 PRK03659 glutathione-regulated 100.0 9.1E-78 2E-82 704.2 67.7 550 112-699 5-558 (601)
3 PRK10669 putative cation:proto 100.0 1.3E-71 2.7E-76 650.5 65.9 528 115-673 9-549 (558)
4 COG0475 KefB Kef-type K+ trans 100.0 1.1E-44 2.4E-49 404.3 45.6 374 113-511 7-386 (397)
5 PLN03159 cation/H(+) antiporte 100.0 9.3E-44 2E-48 428.1 45.4 383 112-511 43-442 (832)
6 COG4651 RosB Kef-type K+ trans 100.0 7.2E-43 1.6E-47 354.4 33.6 374 118-512 12-394 (408)
7 PRK05326 potassium/proton anti 100.0 5E-38 1.1E-42 367.5 41.6 369 112-503 6-384 (562)
8 TIGR00932 2a37 transporter, mo 100.0 6E-33 1.3E-37 296.6 34.7 270 122-412 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.2E-37 2.5E-42 348.4 -3.2 359 120-503 4-375 (380)
10 COG3263 NhaP-type Na+/H+ and K 100.0 1.1E-31 2.4E-36 285.1 31.9 363 110-497 5-376 (574)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.4E-29 2.9E-34 294.1 41.5 341 116-478 18-386 (810)
12 KOG1650 Predicted K+/H+-antipo 100.0 3.1E-29 6.7E-34 298.2 26.5 384 112-513 23-429 (769)
13 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.1E-26 2.4E-31 268.8 41.9 326 119-472 5-364 (525)
14 COG0025 NhaP NhaP-type Na+/H+ 100.0 1.3E-25 2.8E-30 253.1 43.8 339 114-474 8-368 (429)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 2.5E-23 5.4E-28 240.9 35.7 325 132-473 30-378 (559)
16 COG0569 TrkA K+ transport syst 99.9 9.7E-25 2.1E-29 225.9 14.7 207 533-764 2-214 (225)
17 PRK10537 voltage-gated potassi 99.9 2.5E-22 5.3E-27 223.0 27.7 132 530-673 239-370 (393)
18 PF02254 TrkA_N: TrkA-N domain 99.9 8.3E-22 1.8E-26 182.9 13.7 116 534-659 1-116 (116)
19 PRK09496 trkA potassium transp 99.8 4.9E-20 1.1E-24 211.1 17.3 203 530-762 230-439 (453)
20 PRK09496 trkA potassium transp 99.8 1.8E-18 3.8E-23 198.3 13.9 203 533-764 2-218 (453)
21 KOG1965 Sodium/hydrogen exchan 99.7 3.2E-16 6.9E-21 175.5 26.1 343 114-472 37-414 (575)
22 KOG4505 Na+/H+ antiporter [Ino 99.7 3.5E-15 7.7E-20 154.8 26.8 329 123-474 25-382 (467)
23 PRK14853 nhaA pH-dependent sod 99.6 1.6E-12 3.4E-17 143.9 36.1 267 159-474 61-362 (423)
24 COG1226 Kch Kef-type K+ transp 99.5 2.1E-13 4.6E-18 137.6 17.6 141 529-679 19-160 (212)
25 TIGR00773 NhaA Na+/H+ antiport 99.2 1.7E-08 3.8E-13 110.0 31.5 267 159-475 51-344 (373)
26 PRK14856 nhaA pH-dependent sod 99.0 1.9E-07 4E-12 103.6 28.1 266 159-474 67-397 (438)
27 KOG1966 Sodium/hydrogen exchan 98.9 1E-09 2.2E-14 123.1 5.0 315 136-471 68-408 (670)
28 PRK14854 nhaA pH-dependent sod 98.8 4.1E-06 8.8E-11 91.4 28.9 268 159-475 55-348 (383)
29 PRK09561 nhaA pH-dependent sod 98.8 4.3E-06 9.3E-11 91.5 28.6 267 159-475 58-351 (388)
30 PRK09560 nhaA pH-dependent sod 98.8 8E-06 1.7E-10 89.6 29.1 266 159-474 58-352 (389)
31 PRK14855 nhaA pH-dependent sod 98.6 1.7E-05 3.7E-10 87.9 26.9 264 159-475 62-383 (423)
32 COG3004 NhaA Na+/H+ antiporter 98.5 2.2E-05 4.8E-10 82.7 22.7 266 160-476 62-355 (390)
33 PF06965 Na_H_antiport_1: Na+/ 98.5 6.4E-07 1.4E-11 97.8 9.9 269 158-476 53-352 (378)
34 PF05684 DUF819: Protein of un 98.1 0.0042 9.1E-08 69.5 31.4 281 135-457 24-329 (378)
35 PRK06719 precorrin-2 dehydroge 98.1 9.2E-06 2E-10 79.7 7.5 82 531-629 13-94 (157)
36 PRK04148 hypothetical protein; 97.9 0.00011 2.3E-09 69.6 10.5 87 532-632 18-104 (134)
37 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 9.3E-05 2E-09 75.6 9.4 103 532-656 29-136 (200)
38 PRK12460 2-keto-3-deoxyglucona 97.8 0.0048 1E-07 66.2 22.2 253 168-506 50-304 (312)
39 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.018 4E-07 61.6 22.9 257 167-506 49-310 (314)
40 PF00670 AdoHcyase_NAD: S-aden 97.6 0.00013 2.7E-09 71.3 6.3 101 531-653 23-126 (162)
41 PRK06718 precorrin-2 dehydroge 97.5 0.00035 7.5E-09 71.5 8.9 94 531-644 10-105 (202)
42 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.00083 1.8E-08 69.4 8.5 113 531-663 23-152 (217)
43 PF03446 NAD_binding_2: NAD bi 97.3 0.0017 3.6E-08 64.1 10.0 109 533-660 3-120 (163)
44 PRK06522 2-dehydropantoate 2-r 97.2 0.0024 5.2E-08 69.2 11.8 106 533-650 2-111 (304)
45 TIGR00698 conserved hypothetic 97.2 0.55 1.2E-05 51.8 30.1 107 133-263 28-145 (335)
46 PF03601 Cons_hypoth698: Conse 97.0 0.24 5.2E-06 54.0 24.8 108 133-264 23-140 (305)
47 TIGR01470 cysG_Nterm siroheme 97.0 0.0028 6E-08 65.0 9.3 83 532-630 10-94 (205)
48 COG1748 LYS9 Saccharopine dehy 97.0 0.0077 1.7E-07 67.1 12.5 112 532-657 2-121 (389)
49 TIGR02853 spore_dpaA dipicolin 96.9 0.0099 2.1E-07 64.2 12.7 123 531-672 151-282 (287)
50 COG3400 Uncharacterized protei 96.9 0.0021 4.6E-08 68.6 6.8 203 532-763 2-212 (471)
51 TIGR00518 alaDH alanine dehydr 96.8 0.0043 9.3E-08 69.5 9.1 98 531-639 167-267 (370)
52 TIGR00793 kdgT 2-keto-3-deoxyg 96.7 0.13 2.9E-06 54.8 19.1 130 372-506 177-310 (314)
53 TIGR00872 gnd_rel 6-phosphoglu 96.7 0.017 3.7E-07 62.7 13.1 141 533-691 2-150 (298)
54 PF06241 DUF1012: Protein of u 96.7 0.012 2.5E-07 57.5 10.1 130 616-764 17-154 (206)
55 PRK12490 6-phosphogluconate de 96.7 0.013 2.8E-07 63.7 11.9 109 533-657 2-117 (299)
56 PLN02819 lysine-ketoglutarate 96.7 0.014 3.1E-07 72.6 13.4 121 530-654 568-698 (1042)
57 PRK09599 6-phosphogluconate de 96.7 0.017 3.8E-07 62.8 12.8 111 533-659 2-119 (301)
58 PF03435 Saccharop_dh: Sacchar 96.6 0.011 2.5E-07 66.5 11.0 111 534-658 1-121 (386)
59 PF13460 NAD_binding_10: NADH( 96.6 0.012 2.6E-07 58.5 9.7 85 534-631 1-90 (183)
60 PRK12475 thiamine/molybdopteri 96.6 0.013 2.7E-07 64.9 10.5 88 531-630 24-141 (338)
61 COG1023 Gnd Predicted 6-phosph 96.5 0.016 3.5E-07 59.4 9.9 109 534-657 3-117 (300)
62 CHL00194 ycf39 Ycf39; Provisio 96.5 0.014 3E-07 63.8 10.4 70 533-613 2-72 (317)
63 PF13241 NAD_binding_7: Putati 96.5 0.013 2.8E-07 53.2 8.5 79 531-630 7-85 (103)
64 PRK05562 precorrin-2 dehydroge 96.5 0.022 4.7E-07 59.0 10.9 84 531-630 25-110 (223)
65 PRK03562 glutathione-regulated 96.4 0.15 3.3E-06 61.1 19.4 125 123-268 227-354 (621)
66 PRK03659 glutathione-regulated 96.4 0.16 3.5E-06 60.7 19.5 110 123-253 224-334 (601)
67 PF03601 Cons_hypoth698: Conse 96.4 0.091 2E-06 57.2 15.9 109 363-471 23-134 (305)
68 TIGR00932 2a37 transporter, mo 96.4 0.15 3.2E-06 54.6 17.3 141 356-498 6-148 (273)
69 PF03807 F420_oxidored: NADP o 96.4 0.013 2.9E-07 51.9 7.8 86 534-637 2-91 (96)
70 PLN02494 adenosylhomocysteinas 96.4 0.0089 1.9E-07 68.0 8.2 100 531-651 254-355 (477)
71 COG0786 GltS Na+/glutamate sym 96.4 0.92 2E-05 50.2 23.1 117 357-473 234-361 (404)
72 PTZ00075 Adenosylhomocysteinas 96.4 0.0088 1.9E-07 68.2 7.9 101 531-652 254-356 (476)
73 PF02558 ApbA: Ketopantoate re 96.3 0.0061 1.3E-07 58.9 5.6 106 534-651 1-113 (151)
74 PRK05476 S-adenosyl-L-homocyst 96.3 0.013 2.8E-07 66.4 8.8 100 531-651 212-313 (425)
75 TIGR00936 ahcY adenosylhomocys 96.3 0.013 2.8E-07 66.1 8.4 66 531-615 195-260 (406)
76 cd01065 NAD_bind_Shikimate_DH 96.2 0.015 3.3E-07 56.3 7.8 113 531-660 19-139 (155)
77 PRK12921 2-dehydropantoate 2-r 96.2 0.035 7.5E-07 60.3 11.5 105 533-650 2-113 (305)
78 PRK09260 3-hydroxybutyryl-CoA 96.2 0.017 3.8E-07 62.4 8.7 75 533-618 3-94 (288)
79 PRK08306 dipicolinate synthase 96.2 0.055 1.2E-06 58.8 12.5 110 531-659 152-263 (296)
80 PLN02688 pyrroline-5-carboxyla 96.1 0.053 1.1E-06 57.7 11.9 141 533-693 2-152 (266)
81 PRK00094 gpsA NAD(P)H-dependen 96.1 0.03 6.6E-07 61.3 10.3 92 533-639 3-105 (325)
82 PRK05225 ketol-acid reductoiso 96.1 0.0067 1.4E-07 68.2 5.0 72 531-621 36-113 (487)
83 TIGR01505 tartro_sem_red 2-hyd 96.0 0.063 1.4E-06 58.0 12.3 108 533-659 1-118 (291)
84 TIGR02964 xanthine_xdhC xanthi 96.0 0.041 9E-07 58.0 10.5 111 530-653 99-212 (246)
85 PRK07417 arogenate dehydrogena 96.0 0.02 4.3E-07 61.6 8.2 68 533-617 2-69 (279)
86 PRK10669 putative cation:proto 96.0 0.25 5.4E-06 58.6 18.1 129 351-481 15-144 (558)
87 PF05368 NmrA: NmrA-like famil 96.0 0.029 6.2E-07 58.3 9.1 87 534-631 1-95 (233)
88 cd00401 AdoHcyase S-adenosyl-L 95.9 0.025 5.4E-07 63.9 8.7 67 531-616 202-268 (413)
89 TIGR01692 HIBADH 3-hydroxyisob 95.9 0.063 1.4E-06 58.0 11.7 106 536-660 1-116 (288)
90 PRK03818 putative transporter; 95.9 0.29 6.3E-06 57.8 17.8 81 370-451 34-121 (552)
91 PF03956 DUF340: Membrane prot 95.9 0.082 1.8E-06 53.5 11.5 128 140-293 2-134 (191)
92 PTZ00142 6-phosphogluconate de 95.8 0.082 1.8E-06 61.0 12.6 113 533-659 3-126 (470)
93 PRK15059 tartronate semialdehy 95.8 0.062 1.3E-06 58.3 11.0 138 533-691 2-151 (292)
94 TIGR00698 conserved hypothetic 95.8 0.26 5.6E-06 54.3 15.7 106 364-469 29-138 (335)
95 TIGR00210 gltS sodium--glutama 95.8 4.6 9.9E-05 45.7 31.1 90 364-454 243-337 (398)
96 PRK15461 NADH-dependent gamma- 95.8 0.069 1.5E-06 58.0 11.3 139 533-691 3-153 (296)
97 COG2084 MmsB 3-hydroxyisobutyr 95.8 0.042 9.2E-07 58.9 9.3 109 533-660 2-121 (286)
98 TIGR00873 gnd 6-phosphoglucona 95.8 0.1 2.2E-06 60.2 13.0 114 533-659 1-123 (467)
99 COG2855 Predicted membrane pro 95.7 0.16 3.5E-06 55.1 13.3 110 358-467 29-139 (334)
100 PRK05708 2-dehydropantoate 2-r 95.7 0.098 2.1E-06 57.1 12.1 114 532-658 3-124 (305)
101 PRK14106 murD UDP-N-acetylmura 95.7 0.024 5.2E-07 65.2 7.6 89 531-638 5-98 (450)
102 TIGR03649 ergot_EASG ergot alk 95.7 0.079 1.7E-06 56.8 11.2 85 534-631 2-97 (285)
103 PRK11559 garR tartronate semia 95.7 0.13 2.9E-06 55.6 13.0 108 533-659 4-121 (296)
104 PRK07688 thiamine/molybdopteri 95.7 0.064 1.4E-06 59.4 10.6 95 531-638 24-148 (339)
105 COG2855 Predicted membrane pro 95.7 4.2 9.1E-05 44.4 26.5 103 131-258 32-140 (334)
106 COG0475 KefB Kef-type K+ trans 95.5 0.66 1.4E-05 52.6 18.3 113 350-462 14-130 (397)
107 PRK08229 2-dehydropantoate 2-r 95.5 0.074 1.6E-06 58.8 10.5 106 532-651 3-119 (341)
108 PF07991 IlvN: Acetohydroxy ac 95.5 0.025 5.3E-07 55.2 5.7 108 531-658 4-115 (165)
109 PLN02350 phosphogluconate dehy 95.5 0.13 2.8E-06 59.7 12.6 115 532-659 7-132 (493)
110 PLN00141 Tic62-NAD(P)-related 95.5 0.077 1.7E-06 55.9 10.0 74 531-614 17-94 (251)
111 COG0499 SAM1 S-adenosylhomocys 95.4 0.026 5.7E-07 61.1 6.1 66 531-615 209-274 (420)
112 PRK05993 short chain dehydroge 95.4 0.037 8.1E-07 59.1 7.5 73 531-613 4-84 (277)
113 COG0385 Predicted Na+-dependen 95.4 5.1 0.00011 43.7 26.8 112 160-293 35-146 (319)
114 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.1 2.2E-06 59.5 11.2 73 532-616 4-86 (415)
115 PRK13302 putative L-aspartate 95.4 0.12 2.6E-06 55.4 11.1 109 532-658 7-122 (271)
116 PRK08017 oxidoreductase; Provi 95.4 0.037 8E-07 58.0 7.1 59 532-600 3-62 (256)
117 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.054 1.2E-06 59.1 8.5 105 533-648 4-126 (308)
118 PLN02256 arogenate dehydrogena 95.3 0.099 2.1E-06 57.0 10.3 92 530-641 35-128 (304)
119 PRK13403 ketol-acid reductoiso 95.3 0.046 9.9E-07 59.4 7.6 69 531-618 16-84 (335)
120 PRK08293 3-hydroxybutyryl-CoA 95.3 0.089 1.9E-06 56.8 9.9 99 532-641 4-121 (287)
121 PLN03209 translocon at the inn 95.2 0.12 2.6E-06 60.5 11.3 75 530-615 79-169 (576)
122 COG1893 ApbA Ketopantoate redu 95.2 0.11 2.4E-06 56.6 10.5 112 533-655 2-117 (307)
123 cd05291 HicDH_like L-2-hydroxy 95.2 0.049 1.1E-06 59.4 7.6 133 533-683 2-166 (306)
124 PRK07502 cyclohexadienyl dehyd 95.2 0.094 2E-06 57.2 9.8 70 532-617 7-78 (307)
125 PRK14620 NAD(P)H-dependent gly 95.1 0.097 2.1E-06 57.6 9.7 101 533-644 2-111 (326)
126 PRK05326 potassium/proton anti 95.1 0.56 1.2E-05 55.7 16.5 113 352-464 16-132 (562)
127 PRK14618 NAD(P)H-dependent gly 95.0 0.14 3E-06 56.4 10.7 93 533-640 6-105 (328)
128 PF10727 Rossmann-like: Rossma 95.0 0.049 1.1E-06 51.4 6.0 106 530-653 9-120 (127)
129 TIGR03802 Asp_Ala_antiprt aspa 95.0 1.1 2.3E-05 53.3 18.4 81 366-452 35-119 (562)
130 TIGR00465 ilvC ketol-acid redu 95.0 0.14 3.1E-06 55.9 10.5 66 532-616 4-70 (314)
131 PF01408 GFO_IDH_MocA: Oxidore 95.0 0.25 5.4E-06 45.5 10.7 100 533-649 2-106 (120)
132 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.016 3.5E-07 58.4 2.8 71 533-615 2-86 (185)
133 PRK12491 pyrroline-5-carboxyla 95.0 0.4 8.6E-06 51.4 13.7 99 532-650 3-107 (272)
134 PRK00048 dihydrodipicolinate r 95.0 0.15 3.2E-06 54.3 10.3 121 533-673 3-129 (257)
135 PRK06130 3-hydroxybutyryl-CoA 95.0 0.15 3.4E-06 55.5 10.8 71 532-617 5-91 (311)
136 cd05213 NAD_bind_Glutamyl_tRNA 95.0 0.11 2.3E-06 57.0 9.4 97 531-644 178-277 (311)
137 PRK11880 pyrroline-5-carboxyla 94.9 0.21 4.5E-06 53.2 11.3 97 533-650 4-104 (267)
138 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.074 1.6E-06 57.6 8.0 39 532-580 4-42 (291)
139 PRK03818 putative transporter; 94.9 0.46 9.9E-06 56.2 14.9 84 121-204 11-102 (552)
140 PRK04972 putative transporter; 94.8 1.4 3.1E-05 52.1 18.8 81 366-452 37-121 (558)
141 PRK08507 prephenate dehydrogen 94.8 0.082 1.8E-06 56.7 7.9 88 533-640 2-91 (275)
142 PRK06182 short chain dehydroge 94.8 0.069 1.5E-06 56.8 7.1 73 532-614 4-83 (273)
143 PRK03369 murD UDP-N-acetylmura 94.7 0.082 1.8E-06 61.6 8.2 90 531-639 12-101 (488)
144 PRK06545 prephenate dehydrogen 94.7 0.093 2E-06 58.6 8.4 80 533-627 2-81 (359)
145 PRK15057 UDP-glucose 6-dehydro 94.7 0.29 6.2E-06 55.3 12.2 71 533-616 2-84 (388)
146 cd01483 E1_enzyme_family Super 94.7 0.18 3.9E-06 48.3 9.2 91 533-637 1-119 (143)
147 cd01078 NAD_bind_H4MPT_DH NADP 94.7 0.11 2.3E-06 52.7 7.9 77 531-618 28-110 (194)
148 COG0287 TyrA Prephenate dehydr 94.6 0.1 2.2E-06 56.0 8.0 94 531-640 3-98 (279)
149 COG1648 CysG Siroheme synthase 94.6 0.18 3.8E-06 51.9 9.4 84 531-630 12-97 (210)
150 TIGR02356 adenyl_thiF thiazole 94.6 0.24 5.1E-06 50.7 10.2 89 530-630 20-136 (202)
151 PF03616 Glt_symporter: Sodium 94.6 10 0.00022 42.6 30.0 92 363-454 244-340 (368)
152 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.076 1.7E-06 52.0 6.3 71 533-618 1-82 (157)
153 TIGR00831 a_cpa1 Na+/H+ antipo 94.6 0.59 1.3E-05 55.0 14.8 116 352-467 8-124 (525)
154 cd01076 NAD_bind_1_Glu_DH NAD( 94.5 0.12 2.5E-06 54.0 7.9 110 531-661 31-159 (227)
155 PRK10637 cysG siroheme synthas 94.5 0.21 4.5E-06 57.7 10.7 84 531-630 12-97 (457)
156 PLN03159 cation/H(+) antiporte 94.5 1.1 2.4E-05 55.6 17.6 68 354-421 55-133 (832)
157 PRK06249 2-dehydropantoate 2-r 94.5 0.33 7.1E-06 53.1 11.7 113 532-657 6-125 (313)
158 PRK05808 3-hydroxybutyryl-CoA 94.5 0.28 6.1E-06 52.7 11.1 37 533-579 5-41 (282)
159 PRK01710 murD UDP-N-acetylmura 94.4 0.11 2.4E-06 60.0 8.3 90 531-639 14-108 (458)
160 PF01758 SBF: Sodium Bile acid 94.4 2.1 4.6E-05 43.1 16.5 28 167-194 2-29 (187)
161 PRK06953 short chain dehydroge 94.3 0.16 3.4E-06 52.2 8.4 71 533-613 3-78 (222)
162 PLN02712 arogenate dehydrogena 94.3 0.46 9.9E-06 57.4 13.4 107 530-656 368-481 (667)
163 TIGR00210 gltS sodium--glutama 94.3 2.6 5.7E-05 47.6 18.6 154 120-293 227-393 (398)
164 PRK07066 3-hydroxybutyryl-CoA 94.3 0.2 4.4E-06 54.9 9.4 106 532-649 8-128 (321)
165 TIGR02354 thiF_fam2 thiamine b 94.2 0.39 8.4E-06 49.1 10.8 34 530-573 20-54 (200)
166 TIGR00844 c_cpa1 na(+)/h(+) an 94.1 1.1 2.3E-05 54.4 15.7 108 358-465 30-146 (810)
167 TIGR03802 Asp_Ala_antiprt aspa 94.1 0.48 1E-05 56.1 12.8 125 121-265 15-144 (562)
168 cd01491 Ube1_repeat1 Ubiquitin 94.1 0.78 1.7E-05 49.5 13.3 94 531-660 19-113 (286)
169 PLN02545 3-hydroxybutyryl-CoA 94.1 0.44 9.6E-06 51.6 11.7 38 532-579 5-42 (295)
170 TIGR03466 HpnA hopanoid-associ 94.1 0.07 1.5E-06 58.0 5.4 70 533-613 2-72 (328)
171 PRK09291 short chain dehydroge 94.0 0.17 3.8E-06 52.9 8.2 73 532-614 3-82 (257)
172 PRK05274 2-keto-3-deoxyglucona 94.0 0.25 5.4E-06 54.2 9.4 127 371-504 178-310 (326)
173 TIGR03026 NDP-sugDHase nucleot 94.0 0.14 3E-06 58.3 7.8 71 533-616 2-87 (411)
174 PRK05693 short chain dehydroge 94.0 0.18 4E-06 53.6 8.3 72 533-614 3-81 (274)
175 PRK07530 3-hydroxybutyryl-CoA 93.9 0.49 1.1E-05 51.2 11.5 40 532-581 5-44 (292)
176 PRK01438 murD UDP-N-acetylmura 93.9 0.17 3.7E-06 58.7 8.4 86 531-636 16-106 (480)
177 PRK08655 prephenate dehydrogen 93.9 0.33 7.2E-06 55.7 10.6 99 533-650 2-104 (437)
178 PRK07819 3-hydroxybutyryl-CoA 93.8 0.25 5.4E-06 53.4 9.0 142 532-690 6-175 (286)
179 PRK07680 late competence prote 93.8 0.68 1.5E-05 49.6 12.2 99 533-651 2-107 (273)
180 PRK02705 murD UDP-N-acetylmura 93.6 0.2 4.4E-06 57.8 8.5 92 533-638 2-98 (459)
181 PRK08219 short chain dehydroge 93.6 0.23 4.9E-06 50.9 8.0 72 532-614 4-80 (227)
182 PRK12439 NAD(P)H-dependent gly 93.6 0.39 8.3E-06 53.3 10.2 101 531-644 7-116 (341)
183 TIGR03025 EPS_sugtrans exopoly 93.5 3.1 6.7E-05 47.9 17.9 95 531-637 125-222 (445)
184 PLN00106 malate dehydrogenase 93.5 0.7 1.5E-05 50.8 11.8 141 531-684 18-188 (323)
185 PF13478 XdhC_C: XdhC Rossmann 93.5 0.023 5E-07 54.3 0.2 96 534-647 1-96 (136)
186 PRK07679 pyrroline-5-carboxyla 93.5 0.93 2E-05 48.7 12.6 87 533-639 5-98 (279)
187 PF01488 Shikimate_DH: Shikima 93.5 0.09 1.9E-06 50.1 4.3 75 530-618 11-88 (135)
188 TIGR01915 npdG NADPH-dependent 93.5 0.58 1.3E-05 48.4 10.7 92 533-642 2-103 (219)
189 PRK08264 short chain dehydroge 93.4 0.21 4.6E-06 51.7 7.4 73 531-614 6-82 (238)
190 PRK07060 short chain dehydroge 93.4 0.25 5.5E-06 51.2 8.1 73 532-614 10-86 (245)
191 TIGR03082 Gneg_AbrB_dup membra 93.4 1.7 3.6E-05 42.6 13.2 73 120-193 3-77 (156)
192 COG1064 AdhP Zn-dependent alco 93.4 0.38 8.3E-06 52.8 9.5 72 531-614 167-238 (339)
193 PRK05884 short chain dehydroge 93.4 0.19 4.1E-06 52.0 7.0 70 533-612 2-76 (223)
194 PRK07326 short chain dehydroge 93.4 0.17 3.7E-06 52.3 6.7 73 531-613 6-90 (237)
195 PLN02427 UDP-apiose/xylose syn 93.4 0.17 3.6E-06 57.0 7.1 71 532-613 15-94 (386)
196 PLN02712 arogenate dehydrogena 93.4 0.24 5.3E-06 59.7 8.7 70 529-616 50-119 (667)
197 PRK15116 sulfur acceptor prote 93.4 0.62 1.3E-05 49.7 10.8 96 530-637 29-151 (268)
198 PLN02657 3,8-divinyl protochlo 93.3 0.31 6.6E-06 55.1 9.0 71 533-613 62-144 (390)
199 PRK05479 ketol-acid reductoiso 93.3 0.28 6.2E-06 53.8 8.4 69 531-618 17-86 (330)
200 TIGR00036 dapB dihydrodipicoli 93.3 0.69 1.5E-05 49.4 11.1 121 533-673 3-139 (266)
201 PLN02896 cinnamyl-alcohol dehy 93.3 0.21 4.6E-06 55.4 7.5 73 530-613 9-87 (353)
202 PRK08644 thiamine biosynthesis 93.3 0.75 1.6E-05 47.4 11.0 88 530-629 27-141 (212)
203 PLN02858 fructose-bisphosphate 93.2 0.59 1.3E-05 60.9 12.4 111 530-659 323-445 (1378)
204 PRK06482 short chain dehydroge 93.2 0.27 5.8E-06 52.3 8.0 72 532-613 3-84 (276)
205 KOG1370 S-adenosylhomocysteine 93.2 0.23 5E-06 52.7 7.0 87 530-638 213-299 (434)
206 PLN02858 fructose-bisphosphate 93.2 0.63 1.4E-05 60.6 12.5 111 530-659 3-125 (1378)
207 TIGR01763 MalateDH_bact malate 93.2 0.51 1.1E-05 51.5 10.1 137 532-685 2-169 (305)
208 PF13593 DUF4137: SBF-like CPA 93.2 16 0.00034 40.1 22.3 31 162-192 30-60 (313)
209 PF02826 2-Hacid_dh_C: D-isome 93.1 0.11 2.4E-06 51.9 4.6 66 531-615 36-101 (178)
210 PRK09424 pntA NAD(P) transhydr 93.0 0.42 9E-06 55.6 9.6 100 530-639 164-285 (509)
211 KOG1420 Ca2+-activated K+ chan 93.0 0.15 3.4E-06 57.6 5.8 138 529-673 355-515 (1103)
212 PRK06101 short chain dehydroge 93.0 0.22 4.9E-06 51.8 6.9 59 533-601 3-64 (240)
213 PRK07531 bifunctional 3-hydrox 93.0 0.38 8.3E-06 56.1 9.4 74 533-617 6-92 (495)
214 PRK06928 pyrroline-5-carboxyla 93.0 0.96 2.1E-05 48.6 11.8 142 533-692 3-154 (277)
215 PRK13304 L-aspartate dehydroge 92.9 0.92 2E-05 48.4 11.5 105 533-658 3-119 (265)
216 COG2242 CobL Precorrin-6B meth 92.9 0.95 2.1E-05 45.4 10.6 105 537-658 43-158 (187)
217 PRK11199 tyrA bifunctional cho 92.9 0.57 1.2E-05 52.7 10.2 78 531-641 98-176 (374)
218 PRK06914 short chain dehydroge 92.8 0.21 4.5E-06 53.2 6.4 73 532-614 4-90 (280)
219 PRK07024 short chain dehydroge 92.8 0.24 5.3E-06 52.1 6.8 72 532-613 3-86 (257)
220 COG2910 Putative NADH-flavin r 92.8 0.19 4.2E-06 49.9 5.4 68 535-615 5-72 (211)
221 PRK07454 short chain dehydroge 92.7 0.27 5.8E-06 51.0 7.0 73 532-614 7-92 (241)
222 PRK13243 glyoxylate reductase; 92.7 0.18 3.8E-06 55.8 5.8 84 531-634 150-235 (333)
223 PLN02353 probable UDP-glucose 92.7 1.1 2.4E-05 51.9 12.5 70 533-614 3-87 (473)
224 PRK09414 glutamate dehydrogena 92.7 0.45 9.8E-06 54.4 9.1 112 531-660 232-366 (445)
225 PF03616 Glt_symporter: Sodium 92.7 3.3 7.2E-05 46.4 15.9 89 122-210 231-326 (368)
226 PLN00016 RNA-binding protein; 92.7 0.32 7E-06 54.6 8.0 90 530-631 51-157 (378)
227 TIGR00832 acr3 arsenical-resis 92.7 19 0.00041 39.8 28.5 40 432-471 257-297 (328)
228 PRK06019 phosphoribosylaminoim 92.6 0.16 3.5E-06 57.0 5.4 108 533-655 4-115 (372)
229 PLN02695 GDP-D-mannose-3',5'-e 92.5 0.46 9.9E-06 53.3 8.9 73 530-613 20-93 (370)
230 PLN02650 dihydroflavonol-4-red 92.5 0.21 4.6E-06 55.3 6.2 73 530-613 4-85 (351)
231 PLN03139 formate dehydrogenase 92.5 0.4 8.6E-06 54.0 8.3 86 531-634 199-286 (386)
232 PRK00141 murD UDP-N-acetylmura 92.5 0.39 8.5E-06 55.7 8.6 91 531-640 15-106 (473)
233 PF02737 3HCDH_N: 3-hydroxyacy 92.5 0.15 3.2E-06 51.3 4.3 104 533-648 1-122 (180)
234 PRK02318 mannitol-1-phosphate 92.4 1.1 2.5E-05 50.4 11.8 107 533-651 2-134 (381)
235 PRK15469 ghrA bifunctional gly 92.3 0.3 6.6E-06 53.4 7.0 83 531-633 136-220 (312)
236 PRK06476 pyrroline-5-carboxyla 92.3 1.1 2.4E-05 47.5 11.1 96 533-649 2-102 (258)
237 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.3 0.4 8.7E-06 56.0 8.3 39 532-580 6-44 (503)
238 PRK01581 speE spermidine synth 92.3 1.5 3.1E-05 48.8 12.0 98 530-640 150-269 (374)
239 PRK07231 fabG 3-ketoacyl-(acyl 92.1 0.42 9.2E-06 49.6 7.6 73 532-614 6-90 (251)
240 PRK08265 short chain dehydroge 92.1 0.3 6.5E-06 51.6 6.5 72 532-613 7-88 (261)
241 PLN02989 cinnamyl-alcohol dehy 92.1 0.33 7.2E-06 53.0 7.0 73 531-614 5-86 (325)
242 PTZ00117 malate dehydrogenase; 92.1 2.2 4.8E-05 46.9 13.4 137 531-684 5-172 (319)
243 PRK09072 short chain dehydroge 92.1 0.33 7.2E-06 51.2 6.8 73 532-614 6-89 (263)
244 COG0240 GpsA Glycerol-3-phosph 92.1 0.67 1.5E-05 50.5 9.1 74 533-616 3-82 (329)
245 PLN02662 cinnamyl-alcohol dehy 92.1 0.29 6.4E-06 53.2 6.5 71 532-613 5-84 (322)
246 TIGR00841 bass bile acid trans 92.0 20 0.00044 38.6 30.1 24 167-190 12-35 (286)
247 PRK06180 short chain dehydroge 92.0 0.36 7.8E-06 51.5 7.0 73 532-614 5-87 (277)
248 COG0702 Predicted nucleoside-d 92.0 1.1 2.4E-05 47.1 10.7 69 534-614 3-72 (275)
249 PRK11908 NAD-dependent epimera 92.0 0.34 7.3E-06 53.6 7.0 68 533-610 3-73 (347)
250 COG2985 Predicted permease [Ge 92.0 1.3 2.8E-05 50.2 11.2 127 120-267 12-147 (544)
251 COG2085 Predicted dinucleotide 91.9 0.76 1.6E-05 46.9 8.7 94 533-644 3-97 (211)
252 PRK08268 3-hydroxy-acyl-CoA de 91.9 1 2.2E-05 52.7 11.1 90 532-637 8-119 (507)
253 TIGR00561 pntA NAD(P) transhyd 91.9 0.52 1.1E-05 54.8 8.4 96 531-636 164-281 (511)
254 cd00755 YgdL_like Family of ac 91.9 1.3 2.8E-05 46.3 10.7 95 531-638 11-133 (231)
255 PF01262 AlaDh_PNT_C: Alanine 91.9 0.14 3E-06 50.7 3.4 52 530-591 19-70 (168)
256 PRK14619 NAD(P)H-dependent gly 91.8 1.1 2.5E-05 48.8 10.8 35 531-575 4-38 (308)
257 PRK07634 pyrroline-5-carboxyla 91.8 1.9 4.2E-05 45.1 12.1 99 532-650 5-109 (245)
258 PRK12480 D-lactate dehydrogena 91.7 0.87 1.9E-05 50.3 9.7 81 532-634 147-229 (330)
259 smart00859 Semialdhyde_dh Semi 91.7 0.66 1.4E-05 43.1 7.6 87 533-632 1-92 (122)
260 PRK08267 short chain dehydroge 91.7 0.37 7.9E-06 50.7 6.5 72 533-614 3-86 (260)
261 PRK06949 short chain dehydroge 91.6 0.37 8.1E-06 50.4 6.4 74 531-614 9-95 (258)
262 PRK08177 short chain dehydroge 91.6 0.38 8.3E-06 49.5 6.4 71 533-613 3-79 (225)
263 PLN02686 cinnamoyl-CoA reducta 91.5 0.37 8E-06 54.0 6.6 69 531-610 53-133 (367)
264 PF00899 ThiF: ThiF family; I 91.5 0.8 1.7E-05 43.4 8.1 96 531-660 2-100 (135)
265 PRK10538 malonic semialdehyde 91.5 0.42 9E-06 50.0 6.7 71 533-613 2-82 (248)
266 cd05292 LDH_2 A subgroup of L- 91.5 0.62 1.4E-05 50.9 8.2 136 533-685 2-167 (308)
267 PRK07574 formate dehydrogenase 91.4 0.67 1.4E-05 52.2 8.5 87 532-636 193-281 (385)
268 PRK14806 bifunctional cyclohex 91.4 0.76 1.6E-05 56.4 9.8 69 532-616 4-74 (735)
269 PRK06940 short chain dehydroge 91.4 0.42 9E-06 51.1 6.7 73 531-614 2-85 (275)
270 PRK06483 dihydromonapterin red 91.4 0.5 1.1E-05 48.9 7.1 74 531-614 2-83 (236)
271 PF06826 Asp-Al_Ex: Predicted 91.3 5.2 0.00011 39.8 13.7 72 132-203 19-94 (169)
272 COG0289 DapB Dihydrodipicolina 91.3 2 4.4E-05 45.3 11.2 124 533-673 4-138 (266)
273 PRK12939 short chain dehydroge 91.3 0.43 9.3E-06 49.6 6.5 73 532-614 8-93 (250)
274 PRK02472 murD UDP-N-acetylmura 91.2 0.5 1.1E-05 54.3 7.6 89 532-638 6-98 (447)
275 PF00072 Response_reg: Respons 91.2 0.88 1.9E-05 40.7 7.7 94 567-660 1-101 (112)
276 PRK07774 short chain dehydroge 91.2 0.46 9.9E-06 49.5 6.6 73 532-614 7-92 (250)
277 PRK07067 sorbitol dehydrogenas 91.2 0.45 9.8E-06 49.9 6.6 72 532-613 7-88 (257)
278 PRK07074 short chain dehydroge 91.2 0.5 1.1E-05 49.5 6.9 72 533-614 4-86 (257)
279 PRK06924 short chain dehydroge 91.1 0.45 9.7E-06 49.6 6.4 58 533-600 3-65 (251)
280 PRK12829 short chain dehydroge 91.1 0.5 1.1E-05 49.6 6.8 74 531-614 11-95 (264)
281 PRK06138 short chain dehydroge 91.1 0.42 9.1E-06 49.8 6.2 73 532-614 6-90 (252)
282 TIGR01546 GAPDH-II_archae glyc 91.0 0.98 2.1E-05 49.7 9.1 70 534-616 1-86 (333)
283 PRK06194 hypothetical protein; 91.0 0.43 9.2E-06 51.0 6.3 73 532-614 7-92 (287)
284 cd02067 B12-binding B12 bindin 91.0 1.5 3.2E-05 40.5 9.1 70 593-662 38-112 (119)
285 COG0771 MurD UDP-N-acetylmuram 90.9 0.42 9E-06 54.6 6.3 82 531-629 7-92 (448)
286 COG3180 AbrB Putative ammonia 90.9 29 0.00064 38.4 31.7 74 114-190 8-85 (352)
287 PRK03803 murD UDP-N-acetylmura 90.9 0.58 1.2E-05 53.9 7.6 90 529-637 4-97 (448)
288 PRK07523 gluconate 5-dehydroge 90.9 0.46 1E-05 49.8 6.3 73 532-614 11-96 (255)
289 TIGR00783 ccs citrate carrier 90.9 30 0.00065 38.3 21.7 116 365-480 203-327 (347)
290 PRK06057 short chain dehydroge 90.9 0.55 1.2E-05 49.3 6.9 73 532-614 8-88 (255)
291 PRK08643 acetoin reductase; Va 90.9 0.5 1.1E-05 49.5 6.5 72 532-613 3-87 (256)
292 PRK06179 short chain dehydroge 90.8 0.36 7.9E-06 51.0 5.5 71 532-614 5-82 (270)
293 PRK07825 short chain dehydroge 90.8 0.55 1.2E-05 49.8 6.9 72 532-613 6-86 (273)
294 PRK00421 murC UDP-N-acetylmura 90.8 0.59 1.3E-05 54.1 7.6 87 531-637 7-95 (461)
295 cd01485 E1-1_like Ubiquitin ac 90.8 1.2 2.7E-05 45.3 9.1 97 531-639 19-146 (198)
296 PTZ00082 L-lactate dehydrogena 90.8 2.7 5.8E-05 46.2 12.3 137 531-684 6-178 (321)
297 PRK12828 short chain dehydroge 90.8 0.56 1.2E-05 48.2 6.7 73 532-614 8-91 (239)
298 KOG0409 Predicted dehydrogenas 90.8 0.88 1.9E-05 48.7 8.0 48 530-587 34-81 (327)
299 PRK05565 fabG 3-ketoacyl-(acyl 90.8 0.52 1.1E-05 48.8 6.5 73 532-614 6-92 (247)
300 PRK05086 malate dehydrogenase; 90.7 2.1 4.6E-05 46.9 11.4 139 533-683 2-170 (312)
301 cd01487 E1_ThiF_like E1_ThiF_l 90.7 2 4.2E-05 42.9 10.2 85 533-629 1-112 (174)
302 COG0679 Predicted permeases [G 90.7 29 0.00063 37.9 28.5 135 366-503 167-305 (311)
303 TIGR01625 YidE_YbjL_dupl AspT/ 90.7 4.2 9.1E-05 39.7 12.2 55 136-190 21-81 (154)
304 PRK08309 short chain dehydroge 90.6 0.62 1.3E-05 46.6 6.6 87 533-630 2-99 (177)
305 PRK06223 malate dehydrogenase; 90.6 1 2.2E-05 49.0 9.0 136 532-684 3-169 (307)
306 PLN02602 lactate dehydrogenase 90.6 2 4.4E-05 47.7 11.3 136 532-684 38-204 (350)
307 PRK08217 fabG 3-ketoacyl-(acyl 90.6 0.55 1.2E-05 48.8 6.6 74 531-614 5-91 (253)
308 PRK00045 hemA glutamyl-tRNA re 90.6 0.47 1E-05 54.3 6.4 72 531-618 182-255 (423)
309 PRK07102 short chain dehydroge 90.6 0.5 1.1E-05 49.1 6.2 71 533-613 3-84 (243)
310 COG0345 ProC Pyrroline-5-carbo 90.6 3.5 7.6E-05 44.0 12.5 101 533-652 3-108 (266)
311 PRK15182 Vi polysaccharide bio 90.5 1.3 2.9E-05 50.6 10.0 70 533-616 8-87 (425)
312 PRK00066 ldh L-lactate dehydro 90.5 3.3 7.1E-05 45.5 12.7 135 530-682 5-170 (315)
313 PRK04308 murD UDP-N-acetylmura 90.5 0.62 1.3E-05 53.6 7.4 89 531-638 5-97 (445)
314 PRK05867 short chain dehydroge 90.4 0.54 1.2E-05 49.2 6.4 72 532-613 10-94 (253)
315 TIGR03023 WcaJ_sugtrans Undeca 90.4 11 0.00025 43.3 17.8 94 531-636 128-224 (451)
316 PRK08339 short chain dehydroge 90.4 0.56 1.2E-05 49.7 6.5 72 532-613 9-93 (263)
317 PRK12548 shikimate 5-dehydroge 90.4 0.91 2E-05 49.2 8.1 73 531-614 126-208 (289)
318 PLN02583 cinnamoyl-CoA reducta 90.4 0.87 1.9E-05 49.3 8.0 70 531-611 6-84 (297)
319 PRK05866 short chain dehydroge 90.4 0.56 1.2E-05 50.7 6.5 73 532-614 41-126 (293)
320 PRK12429 3-hydroxybutyrate deh 90.4 0.52 1.1E-05 49.2 6.1 73 532-614 5-90 (258)
321 PRK02006 murD UDP-N-acetylmura 90.3 0.61 1.3E-05 54.5 7.3 91 532-640 8-105 (498)
322 PRK07890 short chain dehydroge 90.3 0.6 1.3E-05 48.8 6.6 72 532-613 6-90 (258)
323 COG1179 Dinucleotide-utilizing 90.3 0.53 1.1E-05 48.9 5.8 98 531-661 30-130 (263)
324 PRK09186 flagellin modificatio 90.3 0.61 1.3E-05 48.7 6.6 72 532-613 5-91 (256)
325 PRK07666 fabG 3-ketoacyl-(acyl 90.3 0.68 1.5E-05 47.9 6.9 73 532-614 8-93 (239)
326 PRK05786 fabG 3-ketoacyl-(acyl 90.3 0.66 1.4E-05 47.9 6.7 73 532-614 6-90 (238)
327 KOG1251 Serine racemase [Signa 90.2 5.6 0.00012 41.4 12.9 128 529-673 71-238 (323)
328 PRK06172 short chain dehydroge 90.2 0.61 1.3E-05 48.7 6.5 72 532-613 8-92 (253)
329 TIGR01181 dTDP_gluc_dehyt dTDP 90.2 1.1 2.5E-05 48.1 8.8 71 533-614 1-82 (317)
330 PRK07831 short chain dehydroge 90.2 0.6 1.3E-05 49.2 6.4 74 531-614 17-106 (262)
331 COG1086 Predicted nucleoside-d 90.1 24 0.00052 41.3 19.3 73 530-615 115-187 (588)
332 PRK07814 short chain dehydroge 90.1 0.65 1.4E-05 49.1 6.6 72 532-613 11-95 (263)
333 PRK04972 putative transporter; 90.0 5.7 0.00012 47.1 14.9 79 122-204 18-101 (558)
334 PRK12936 3-ketoacyl-(acyl-carr 90.0 0.99 2.1E-05 46.7 7.8 73 532-614 7-89 (245)
335 PRK12826 3-ketoacyl-(acyl-carr 90.0 0.69 1.5E-05 48.0 6.7 72 532-613 7-91 (251)
336 PRK15181 Vi polysaccharide bio 90.0 0.63 1.4E-05 51.6 6.7 71 532-613 16-98 (348)
337 TIGR03589 PseB UDP-N-acetylglu 90.0 0.71 1.5E-05 50.7 7.0 71 532-613 5-82 (324)
338 cd00650 LDH_MDH_like NAD-depen 90.0 0.47 1E-05 50.5 5.4 132 534-681 1-165 (263)
339 PRK12460 2-keto-3-deoxyglucona 89.9 4 8.6E-05 44.3 12.2 70 139-209 169-238 (312)
340 TIGR01832 kduD 2-deoxy-D-gluco 89.8 1.1 2.4E-05 46.6 8.0 72 532-613 6-88 (248)
341 PRK06200 2,3-dihydroxy-2,3-dih 89.8 0.78 1.7E-05 48.4 6.9 72 532-613 7-88 (263)
342 PLN00203 glutamyl-tRNA reducta 89.8 0.47 1E-05 55.5 5.6 72 531-616 266-340 (519)
343 PRK13394 3-hydroxybutyrate deh 89.8 0.68 1.5E-05 48.5 6.5 73 532-614 8-93 (262)
344 TIGR01142 purT phosphoribosylg 89.7 0.45 9.8E-06 53.3 5.3 109 533-655 1-116 (380)
345 PLN00198 anthocyanidin reducta 89.7 0.78 1.7E-05 50.4 7.1 72 531-613 9-88 (338)
346 PRK12367 short chain dehydroge 89.7 1.1 2.3E-05 47.2 7.9 72 532-614 15-88 (245)
347 TIGR03082 Gneg_AbrB_dup membra 89.7 17 0.00038 35.5 15.8 115 353-472 6-125 (156)
348 TIGR01327 PGDH D-3-phosphoglyc 89.7 0.53 1.2E-05 55.3 6.1 84 531-633 138-223 (525)
349 PRK07424 bifunctional sterol d 89.7 1 2.2E-05 51.1 8.1 71 532-613 179-253 (406)
350 PRK08251 short chain dehydroge 89.7 0.75 1.6E-05 47.9 6.6 72 532-613 3-89 (248)
351 PRK06196 oxidoreductase; Provi 89.7 0.72 1.6E-05 50.3 6.7 72 532-613 27-107 (315)
352 PRK08762 molybdopterin biosynt 89.6 1.6 3.5E-05 49.1 9.6 88 531-630 135-250 (376)
353 PRK06181 short chain dehydroge 89.6 0.71 1.5E-05 48.6 6.4 71 533-613 3-86 (263)
354 PLN02214 cinnamoyl-CoA reducta 89.6 0.8 1.7E-05 50.7 7.1 72 532-614 11-90 (342)
355 TIGR03325 BphB_TodD cis-2,3-di 89.5 0.79 1.7E-05 48.3 6.7 72 532-613 6-87 (262)
356 PRK01368 murD UDP-N-acetylmura 89.5 0.96 2.1E-05 52.2 7.9 87 531-637 6-92 (454)
357 PRK04690 murD UDP-N-acetylmura 89.5 0.81 1.8E-05 53.1 7.3 87 532-638 9-99 (468)
358 PF02310 B12-binding: B12 bind 89.5 1.5 3.4E-05 40.3 7.9 90 545-662 19-114 (121)
359 PF00056 Ldh_1_N: lactate/mala 89.5 2.8 6.1E-05 40.2 9.9 97 533-644 2-122 (141)
360 PRK12320 hypothetical protein; 89.4 1.1 2.5E-05 54.1 8.6 67 533-614 2-69 (699)
361 TIGR01472 gmd GDP-mannose 4,6- 89.4 0.68 1.5E-05 51.1 6.3 71 533-613 2-86 (343)
362 TIGR01035 hemA glutamyl-tRNA r 89.4 0.64 1.4E-05 53.1 6.2 71 531-617 180-252 (417)
363 COG0026 PurK Phosphoribosylami 89.3 0.75 1.6E-05 50.6 6.3 108 533-655 3-114 (375)
364 PRK08213 gluconate 5-dehydroge 89.3 0.81 1.8E-05 48.0 6.6 73 532-614 13-98 (259)
365 COG1004 Ugd Predicted UDP-gluc 89.3 0.98 2.1E-05 50.2 7.2 71 533-615 2-86 (414)
366 PRK05875 short chain dehydroge 89.3 0.78 1.7E-05 48.7 6.5 74 531-614 7-95 (276)
367 PLN02477 glutamate dehydrogena 89.3 1.1 2.5E-05 50.7 8.0 109 531-660 206-333 (410)
368 PF00289 CPSase_L_chain: Carba 89.3 0.33 7.1E-06 44.7 3.1 88 532-629 3-98 (110)
369 PRK06125 short chain dehydroge 89.2 1.2 2.5E-05 46.9 7.7 73 532-614 8-90 (259)
370 PRK00377 cbiT cobalt-precorrin 89.2 3.1 6.8E-05 42.1 10.6 96 530-639 40-145 (198)
371 TIGR03206 benzo_BadH 2-hydroxy 89.2 0.84 1.8E-05 47.4 6.6 73 532-614 4-89 (250)
372 COG0111 SerA Phosphoglycerate 89.2 0.72 1.6E-05 50.7 6.2 83 531-633 142-227 (324)
373 KOG1201 Hydroxysteroid 17-beta 89.0 6.8 0.00015 42.2 13.1 81 531-637 37-119 (300)
374 PRK09880 L-idonate 5-dehydroge 89.0 2.1 4.6E-05 47.2 9.9 75 531-617 170-247 (343)
375 COG0025 NhaP NhaP-type Na+/H+ 89.0 18 0.0004 41.4 17.7 115 354-468 18-137 (429)
376 PRK05717 oxidoreductase; Valid 89.0 0.87 1.9E-05 47.7 6.5 72 532-613 11-92 (255)
377 PRK08340 glucose-1-dehydrogena 89.0 0.9 2E-05 47.8 6.7 71 533-613 2-84 (259)
378 PF01113 DapB_N: Dihydrodipico 89.0 1 2.2E-05 42.2 6.3 102 533-654 2-115 (124)
379 PLN02253 xanthoxin dehydrogena 89.0 0.83 1.8E-05 48.6 6.5 72 532-613 19-102 (280)
380 TIGR02415 23BDH acetoin reduct 89.0 1.2 2.5E-05 46.5 7.5 71 533-613 2-85 (254)
381 PRK12814 putative NADPH-depend 88.9 0.7 1.5E-05 55.9 6.5 76 530-616 192-289 (652)
382 TIGR01963 PHB_DH 3-hydroxybuty 88.9 0.84 1.8E-05 47.5 6.3 71 533-613 3-86 (255)
383 PRK08605 D-lactate dehydrogena 88.9 0.63 1.4E-05 51.5 5.5 81 532-633 147-230 (332)
384 PRK06500 short chain dehydroge 88.8 0.92 2E-05 47.1 6.6 72 532-613 7-88 (249)
385 COG0786 GltS Na+/glutamate sym 88.8 6.5 0.00014 43.8 13.0 117 121-257 231-358 (404)
386 PRK08277 D-mannonate oxidoredu 88.8 0.82 1.8E-05 48.6 6.3 73 532-614 11-96 (278)
387 cd05290 LDH_3 A subgroup of L- 88.8 3.5 7.6E-05 45.0 11.2 134 533-684 1-169 (307)
388 PRK07677 short chain dehydroge 88.7 0.83 1.8E-05 47.8 6.2 71 533-613 3-86 (252)
389 cd01492 Aos1_SUMO Ubiquitin ac 88.7 3.5 7.6E-05 42.0 10.5 94 531-659 21-117 (197)
390 PRK12742 oxidoreductase; Provi 88.7 1.6 3.5E-05 44.9 8.2 72 532-613 7-83 (237)
391 TIGR01318 gltD_gamma_fam gluta 88.6 0.75 1.6E-05 53.3 6.2 76 530-616 140-237 (467)
392 TIGR01161 purK phosphoribosyla 88.6 0.61 1.3E-05 51.8 5.3 107 534-655 2-113 (352)
393 TIGR03376 glycerol3P_DH glycer 88.6 1.9 4E-05 47.9 9.0 95 533-639 1-116 (342)
394 PRK07576 short chain dehydroge 88.6 0.98 2.1E-05 47.8 6.7 73 531-613 9-94 (264)
395 cd01339 LDH-like_MDH L-lactate 88.6 2.9 6.4E-05 45.4 10.4 133 534-683 1-164 (300)
396 COG0686 Ald Alanine dehydrogen 88.5 1.9 4.2E-05 46.4 8.5 100 529-640 166-269 (371)
397 PRK06139 short chain dehydroge 88.4 0.92 2E-05 50.1 6.5 74 531-614 7-93 (330)
398 PRK13581 D-3-phosphoglycerate 88.4 1 2.2E-05 53.1 7.1 67 531-617 140-206 (526)
399 PRK07109 short chain dehydroge 88.3 0.96 2.1E-05 49.9 6.6 72 532-613 9-93 (334)
400 cd08230 glucose_DH Glucose deh 88.3 2 4.4E-05 47.5 9.2 75 531-617 173-250 (355)
401 PRK06079 enoyl-(acyl carrier p 88.3 1.1 2.3E-05 47.2 6.6 72 532-613 8-91 (252)
402 PRK03612 spermidine synthase; 88.3 2.2 4.8E-05 50.2 9.8 72 530-615 297-383 (521)
403 PLN02775 Probable dihydrodipic 88.3 8.2 0.00018 41.5 13.2 131 530-673 10-148 (286)
404 PRK07775 short chain dehydroge 88.2 0.97 2.1E-05 48.1 6.4 74 531-614 10-96 (274)
405 PRK08223 hypothetical protein; 88.2 3.3 7.1E-05 44.7 10.2 96 531-660 27-125 (287)
406 PRK05653 fabG 3-ketoacyl-(acyl 88.2 1.1 2.3E-05 46.2 6.6 72 532-613 6-90 (246)
407 cd00757 ThiF_MoeB_HesA_family 88.2 1.3 2.8E-05 46.1 7.1 88 531-630 21-136 (228)
408 PTZ00325 malate dehydrogenase; 88.2 4.4 9.6E-05 44.5 11.5 142 532-683 9-177 (321)
409 PRK06436 glycerate dehydrogena 88.2 1 2.2E-05 49.2 6.4 83 531-636 122-206 (303)
410 cd05313 NAD_bind_2_Glu_DH NAD( 88.1 2.5 5.3E-05 44.8 9.1 112 531-660 38-176 (254)
411 PRK12384 sorbitol-6-phosphate 88.1 1.1 2.3E-05 47.1 6.5 73 532-614 3-90 (259)
412 TIGR01082 murC UDP-N-acetylmur 88.1 1.1 2.3E-05 51.7 7.0 86 533-638 1-88 (448)
413 COG0677 WecC UDP-N-acetyl-D-ma 88.0 1.2 2.7E-05 49.4 6.9 73 531-615 9-94 (436)
414 PRK08300 acetaldehyde dehydrog 87.8 6.6 0.00014 42.7 12.3 119 531-663 4-134 (302)
415 COG1063 Tdh Threonine dehydrog 87.8 2.7 5.8E-05 46.8 9.7 75 533-617 171-250 (350)
416 PLN02928 oxidoreductase family 87.7 1.4 3.1E-05 49.0 7.4 93 531-634 159-257 (347)
417 PRK07097 gluconate 5-dehydroge 87.7 1.2 2.6E-05 47.0 6.7 72 532-613 11-95 (265)
418 PLN02735 carbamoyl-phosphate s 87.7 0.39 8.4E-06 61.3 3.3 82 530-621 573-665 (1102)
419 PLN02274 inosine-5'-monophosph 87.6 5.4 0.00012 46.6 12.4 121 530-661 233-382 (505)
420 PRK08773 2-octaprenyl-3-methyl 87.6 0.55 1.2E-05 52.8 4.2 64 531-604 6-69 (392)
421 PRK08125 bifunctional UDP-gluc 87.6 0.91 2E-05 55.0 6.3 70 530-610 314-387 (660)
422 TIGR00640 acid_CoA_mut_C methy 87.5 3.6 7.7E-05 39.2 9.0 83 581-663 27-116 (132)
423 PRK08818 prephenate dehydrogen 87.5 1.3 2.9E-05 49.5 7.0 35 530-573 3-38 (370)
424 PRK07478 short chain dehydroge 87.5 1.3 2.7E-05 46.4 6.6 73 532-614 7-92 (254)
425 PF05145 AmoA: Putative ammoni 87.4 9.1 0.0002 42.1 13.4 112 114-244 154-267 (318)
426 TIGR00946 2a69 he Auxin Efflux 87.4 17 0.00037 39.8 15.6 147 124-293 170-319 (321)
427 PRK12769 putative oxidoreducta 87.4 0.75 1.6E-05 55.7 5.4 75 530-615 326-422 (654)
428 PRK06463 fabG 3-ketoacyl-(acyl 87.3 1.5 3.2E-05 45.9 7.1 72 532-613 8-87 (255)
429 PF13847 Methyltransf_31: Meth 87.3 1.4 3.1E-05 42.4 6.4 61 537-612 12-80 (152)
430 PRK07806 short chain dehydroge 87.3 1.3 2.8E-05 46.0 6.6 72 532-613 7-92 (248)
431 TIGR03215 ac_ald_DH_ac acetald 87.3 4.9 0.00011 43.4 10.9 113 533-662 3-127 (285)
432 PRK08410 2-hydroxyacid dehydro 87.2 0.83 1.8E-05 50.0 5.2 83 531-636 145-229 (311)
433 KOG2304 3-hydroxyacyl-CoA dehy 87.2 0.82 1.8E-05 46.9 4.6 43 529-581 9-51 (298)
434 cd05293 LDH_1 A subgroup of L- 87.2 14 0.00031 40.4 14.7 138 531-683 3-169 (312)
435 PF00070 Pyr_redox: Pyridine n 87.2 0.84 1.8E-05 39.0 4.2 34 533-576 1-34 (80)
436 PRK08085 gluconate 5-dehydroge 87.2 1.3 2.7E-05 46.4 6.4 73 532-614 10-95 (254)
437 PRK07041 short chain dehydroge 87.2 1.7 3.7E-05 44.6 7.3 67 538-614 5-78 (230)
438 PRK05650 short chain dehydroge 87.1 1.3 2.8E-05 46.9 6.5 72 533-614 2-86 (270)
439 PLN02986 cinnamyl-alcohol dehy 87.1 1.4 3.1E-05 48.0 7.0 71 532-613 6-85 (322)
440 PRK12809 putative oxidoreducta 87.1 1 2.3E-05 54.3 6.4 75 530-615 309-405 (639)
441 PRK06141 ornithine cyclodeamin 87.1 1.5 3.2E-05 48.1 7.1 92 531-640 125-220 (314)
442 PRK08862 short chain dehydroge 87.1 1.3 2.9E-05 45.8 6.5 72 532-613 6-91 (227)
443 TIGR02437 FadB fatty oxidation 87.1 2.3 4.9E-05 52.0 9.2 108 531-648 313-436 (714)
444 PRK13303 L-aspartate dehydroge 87.1 3.7 8.1E-05 43.8 9.9 117 533-669 3-130 (265)
445 TIGR03366 HpnZ_proposed putati 87.0 3.3 7.1E-05 44.3 9.6 76 531-617 121-199 (280)
446 PRK14573 bifunctional D-alanyl 87.0 1.1 2.3E-05 55.7 6.6 87 532-638 5-93 (809)
447 PRK11730 fadB multifunctional 86.8 2.4 5.2E-05 51.8 9.3 107 532-648 314-436 (715)
448 PF01073 3Beta_HSD: 3-beta hyd 86.8 0.82 1.8E-05 49.2 4.8 66 536-612 3-73 (280)
449 COG0373 HemA Glutamyl-tRNA red 86.8 2.4 5.2E-05 47.9 8.6 71 531-617 178-250 (414)
450 PRK07063 short chain dehydroge 86.8 1.3 2.8E-05 46.5 6.3 73 532-614 8-95 (260)
451 PRK12810 gltD glutamate syntha 86.8 0.95 2.1E-05 52.5 5.7 76 530-616 142-239 (471)
452 PRK00258 aroE shikimate 5-dehy 86.8 1.1 2.3E-05 48.3 5.7 125 531-669 123-253 (278)
453 PRK12779 putative bifunctional 86.8 1.3 2.8E-05 55.8 7.1 76 530-615 305-402 (944)
454 COG0654 UbiH 2-polyprenyl-6-me 86.8 0.81 1.7E-05 51.6 4.9 58 532-603 3-60 (387)
455 COG1255 Uncharacterized protei 86.8 4.2 9E-05 37.4 8.3 90 530-637 13-102 (129)
456 PTZ00314 inosine-5'-monophosph 86.8 5.7 0.00012 46.4 11.9 114 536-661 235-375 (495)
457 PRK05865 hypothetical protein; 86.8 5.9 0.00013 49.2 12.5 110 533-658 2-123 (854)
458 PRK06197 short chain dehydroge 86.7 2.4 5.1E-05 45.9 8.4 72 532-613 17-103 (306)
459 PRK05472 redox-sensing transcr 86.6 1.6 3.4E-05 45.0 6.6 86 530-630 83-170 (213)
460 PRK09242 tropinone reductase; 86.6 1.3 2.8E-05 46.4 6.1 73 532-614 10-97 (257)
461 PRK07856 short chain dehydroge 86.6 1.2 2.5E-05 46.7 5.7 70 532-613 7-83 (252)
462 PRK10124 putative UDP-glucose 86.5 45 0.00097 38.7 19.1 93 531-639 143-239 (463)
463 PRK07984 enoyl-(acyl carrier p 86.5 1.6 3.5E-05 46.3 6.8 72 532-613 7-92 (262)
464 PRK07035 short chain dehydroge 86.5 1.5 3.2E-05 45.8 6.5 72 532-613 9-93 (252)
465 PRK06603 enoyl-(acyl carrier p 86.5 1.7 3.6E-05 46.0 6.9 72 532-613 9-94 (260)
466 TIGR00745 apbA_panE 2-dehydrop 86.4 4.4 9.4E-05 43.4 10.2 103 542-656 2-111 (293)
467 TIGR01921 DAP-DH diaminopimela 86.4 2.4 5.2E-05 46.5 8.1 68 532-618 4-73 (324)
468 TIGR01087 murD UDP-N-acetylmur 86.4 1.4 3.1E-05 50.3 6.8 86 533-638 1-92 (433)
469 TIGR02355 moeB molybdopterin s 86.4 6.4 0.00014 41.4 11.1 96 531-660 24-122 (240)
470 COG1052 LdhA Lactate dehydroge 86.4 1.7 3.6E-05 47.9 6.9 86 531-636 146-233 (324)
471 PRK09288 purT phosphoribosylgl 86.4 0.97 2.1E-05 51.0 5.3 74 530-615 11-85 (395)
472 PRK11188 rrmJ 23S rRNA methylt 86.3 5.2 0.00011 41.1 10.2 66 533-613 54-125 (209)
473 cd00704 MDH Malate dehydrogena 86.3 6.9 0.00015 43.1 11.7 139 533-682 2-174 (323)
474 PRK05597 molybdopterin biosynt 86.3 3.4 7.4E-05 46.1 9.4 88 531-630 28-143 (355)
475 PRK12815 carB carbamoyl phosph 86.2 1 2.2E-05 57.6 5.9 115 530-655 6-143 (1068)
476 PF03390 2HCT: 2-hydroxycarbox 86.2 28 0.0006 39.4 16.3 99 133-250 268-373 (414)
477 TIGR00514 accC acetyl-CoA carb 86.0 1.4 3.1E-05 50.7 6.5 114 532-655 3-130 (449)
478 TIGR00783 ccs citrate carrier 86.0 23 0.0005 39.2 15.3 55 135-189 203-264 (347)
479 TIGR03570 NeuD_NnaD sugar O-ac 85.9 3.5 7.7E-05 41.2 8.7 81 533-629 1-82 (201)
480 PRK07062 short chain dehydroge 85.9 1.5 3.3E-05 46.1 6.2 73 532-614 9-96 (265)
481 PRK07904 short chain dehydroge 85.9 1.6 3.4E-05 46.0 6.3 73 531-613 8-95 (253)
482 PRK08263 short chain dehydroge 85.9 1.9 4.1E-05 45.8 7.0 73 532-614 4-86 (275)
483 PRK06113 7-alpha-hydroxysteroi 85.8 1.7 3.6E-05 45.6 6.5 73 532-614 12-97 (255)
484 PRK05600 thiamine biosynthesis 85.8 4.6 9.9E-05 45.4 10.2 89 530-630 40-156 (370)
485 PRK08324 short chain dehydroge 85.8 1.4 3.1E-05 53.6 6.6 73 532-614 423-507 (681)
486 PLN02948 phosphoribosylaminoim 85.8 1 2.3E-05 53.5 5.3 111 530-655 21-136 (577)
487 PRK08594 enoyl-(acyl carrier p 85.7 1.8 3.9E-05 45.7 6.7 71 532-612 8-94 (257)
488 PRK05294 carB carbamoyl phosph 85.7 1.6 3.5E-05 55.9 7.3 112 530-654 553-683 (1066)
489 PRK08628 short chain dehydroge 85.7 1.7 3.8E-05 45.4 6.6 73 532-614 8-92 (258)
490 PRK07878 molybdopterin biosynt 85.7 4.2 9.1E-05 46.0 10.0 114 531-678 42-159 (392)
491 cd05294 LDH-like_MDH_nadp A la 85.7 13 0.00028 40.7 13.4 135 533-684 2-171 (309)
492 PRK05876 short chain dehydroge 85.7 1.7 3.6E-05 46.5 6.5 72 532-613 7-91 (275)
493 PRK08618 ornithine cyclodeamin 85.7 6.3 0.00014 43.4 11.1 109 531-662 127-247 (325)
494 KOG1298 Squalene monooxygenase 85.7 1.5 3.1E-05 48.6 5.8 37 530-576 44-80 (509)
495 PRK12771 putative glutamate sy 85.6 1.1 2.4E-05 53.3 5.4 73 530-616 136-233 (564)
496 PRK06487 glycerate dehydrogena 85.5 1.1 2.4E-05 49.2 5.1 33 531-573 148-180 (317)
497 PRK04207 glyceraldehyde-3-phos 85.5 4.1 8.9E-05 45.2 9.6 82 533-629 3-101 (341)
498 PRK03806 murD UDP-N-acetylmura 85.4 2.1 4.5E-05 49.2 7.5 87 532-638 7-95 (438)
499 PLN02735 carbamoyl-phosphate s 85.4 3.6 7.8E-05 52.7 10.2 114 531-655 23-159 (1102)
500 TIGR01316 gltA glutamate synth 85.4 2.4 5.1E-05 48.9 7.9 75 530-615 132-228 (449)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.9e-78 Score=710.96 Aligned_cols=552 Identities=33% Similarity=0.549 Sum_probs=490.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
+++++++++++++.+++++++|+|+|+++|||++|+++|| +|++++.+.++.++|+|++++||.+|+|+|++++|+.+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~ 84 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3577888899999999999999999999999999999999 57788888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCC
Q 003861 190 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPT 269 (791)
Q Consensus 190 ~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~ 269 (791)
|+++.++..++++++++++.+ .+++| ++|..++++|++++.|||++++++++|++++++
T Consensus 85 ~~~~~~g~~qv~~~~~~~~~~-------------~~~~g--------~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t 143 (621)
T PRK03562 85 RSIFGGGALQMVACGGLLGLF-------------CMLLG--------LRWQVALLIGLGLALSSTAIAMQAMNERNLMVT 143 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999998765543 35666 689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 003861 270 RFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVAL 349 (791)
Q Consensus 270 ~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~ 349 (791)
+.|+.+++++++||+++++++++++.+...+............++.++++++++++++|+.+++++|+.+.+++|.+...
T Consensus 144 ~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~ 223 (621)
T PRK03562 144 QMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAV 223 (621)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999999999999999998876654211111112222344455555556677899999999999988889998888
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHH
Q 003861 350 CLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 429 (791)
Q Consensus 350 ~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~ 429 (791)
+++++++++++++.+|+|+++|||+||++++++++++++++++++|+++|+|+||+++|+++|++.+..+|+.++.++++
T Consensus 224 ~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~ 303 (621)
T PRK03562 224 ALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLG 303 (621)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999987777776667777
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 003861 430 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAA 509 (791)
Q Consensus 430 ~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~~l~ 509 (791)
.+++|+++++..++++|+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.+++++++|++++|++..+..+..
T Consensus 304 ~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~ 383 (621)
T PRK03562 304 FLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLE 383 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988765543
Q ss_pred hhhhhhcCCcchhhhhhcccCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE
Q 003861 510 DFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY 589 (791)
Q Consensus 510 ~~l~~~~~~~~~~~~~~~~~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~ 589 (791)
.. +..+... ++.. .+.++|++||||||+|+.+++.|. ++|+++++||.|+++++++++.|.++++
T Consensus 384 ~~---~~~~~~~-~~~~-~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v~~ 448 (621)
T PRK03562 384 QS---RTEEARE-ADEI-DEQQPRVIIAGFGRFGQIVGRLLL----------SSGVKMTVLDHDPDHIETLRKFGMKVFY 448 (621)
T ss_pred HH---Hhhhccc-cccc-ccccCcEEEEecChHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhcCCeEEE
Confidence 21 1111101 1111 134789999999999999999998 8999999999999999999999999999
Q ss_pred ccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHH
Q 003861 590 GDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 669 (791)
Q Consensus 590 GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~ 669 (791)
||++|+++|+++|+++||.+|++++||+.|..++..+|+.||+++++||++|++|.+.|+++|||+|+.+..+.+.++++
T Consensus 449 GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~ 528 (621)
T PRK03562 449 GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGR 528 (621)
T ss_pred EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHhcccccceee
Q 003861 670 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQE 699 (791)
Q Consensus 670 ~~l~~l~~~~~~~~~l~~~~~~~~~~~~~e 699 (791)
+++..+|.+++.++...+.+|+.++....+
T Consensus 529 ~~L~~lg~~~~~~~~~~~~~r~~~~~~~~~ 558 (621)
T PRK03562 529 LVLESLGLGPYEARERADRFRRHNLQMVEE 558 (621)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888766555544
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=9.1e-78 Score=704.17 Aligned_cols=550 Identities=34% Similarity=0.542 Sum_probs=485.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
+++.++++++.++.+.+++++|+|+|+++||+++|+++|| +|++++.+.++.++++|++++||.+|+|+|++++|+.+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567778889999999999999999999999999999999 57788888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCC
Q 003861 190 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPT 269 (791)
Q Consensus 190 ~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~ 269 (791)
+.++.++..++++|+++++.+ .+++| ++|..++++|++++.||+++++++++|+|..++
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~-------------~~~~g--------~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t 143 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGL-------------LMLTD--------FSWQAAVVGGIGLAMSSTAMALQLMREKGMNRS 143 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHc--------cCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999999999998765543 24466 689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 003861 270 RFGSATLGILLLQDIAVVPLLVILPVLESQVSES-VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVA 348 (791)
Q Consensus 270 ~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~ 348 (791)
+.|+++++++++||+.+++++.+++.+....... .|.. ....+..++++.++++|+.+++++++.+.+.+|.++.
T Consensus 144 ~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 219 (601)
T PRK03659 144 ESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMK----IGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTA 219 (601)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999998887765432221 1221 1222233344456688999999999988888999988
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHH
Q 003861 349 LCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 428 (791)
Q Consensus 349 ~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l 428 (791)
.+++++++.+++++.+|+|+++|||+||+++++++++|++++++++|+++|.|+||+++|+++|+..+.++|+.++.+++
T Consensus 220 ~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~ 299 (601)
T PRK03659 220 AALLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVV 299 (601)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999998888777777777
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHHHH
Q 003861 429 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWA 508 (791)
Q Consensus 429 ~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~~l 508 (791)
+.+++|++++++.++.+|+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.++.++++|++++|++.++..+.
T Consensus 300 ~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~ 379 (601)
T PRK03659 300 VLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKW 379 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred H-hhhhhhcCCcchhhhhhcccCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE
Q 003861 509 A-DFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587 (791)
Q Consensus 509 ~-~~l~~~~~~~~~~~~~~~~~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~ 587 (791)
. ++..... ... ..+ ...+.++|++||||||+|+.+++.|. ++|++|++||.||++++++++.|.++
T Consensus 380 ~~~~~~~~~-~~~-~~~-~~~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v 446 (601)
T PRK03659 380 LARRLNGPE-EED-EKP-WVEDDKPQVIIVGFGRFGQVIGRLLM----------ANKMRITVLERDISAVNLMRKYGYKV 446 (601)
T ss_pred HHHhhcccc-ccc-ccc-ccccccCCEEEecCchHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhCCCeE
Confidence 2 2221110 100 011 11135789999999999999999998 89999999999999999999999999
Q ss_pred EEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHH
Q 003861 588 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQL 667 (791)
Q Consensus 588 v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~l 667 (791)
++||++|+++|+++|+++||++|++++||+.|..++..+|+.+|+.+|+||++|++|.+.|+++|||+|+.++.+++.++
T Consensus 447 ~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l 526 (601)
T PRK03659 447 YYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALEL 526 (601)
T ss_pred EEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhcccccceee
Q 003861 668 GSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQE 699 (791)
Q Consensus 668 a~~~l~~l~~~~~~~~~l~~~~~~~~~~~~~e 699 (791)
+++++..+|.+++.+....+.+|++++....+
T Consensus 527 ~~~~L~~lg~~~~~~~~~~~~~r~~~~~~~~~ 558 (601)
T PRK03659 527 GRKTLVSLGMHPHQAQRAQQHFRRLDMRMLRE 558 (601)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888655444433
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.3e-71 Score=650.54 Aligned_cols=528 Identities=25% Similarity=0.354 Sum_probs=452.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 115 LDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 115 ~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
..+.++++++.+++.+++|+|+|+++||+++|+++||. |++++.+.++.++++|++++||.+|+|+|++.+|+.++..
T Consensus 9 ~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~ 88 (558)
T PRK10669 9 TTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHH
Confidence 34456778899999999999999999999999999994 6677778899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhH
Q 003861 193 FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFG 272 (791)
Q Consensus 193 ~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g 272 (791)
+..+..+++++++...++ .+.++ +++..++++|++++.||+++++++++|+|..+++.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------------~~~~~--------~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 89 IPGAIAQIAVATLLGMAL-------------SAVLG--------WSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcch
Confidence 877888877776544332 35566 688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhc---cCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Q 003861 273 SATLGILLLQDIAVVPLLVILPVLESQ---VSESVW---PMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAF 346 (791)
Q Consensus 273 ~l~l~~~~l~Di~~v~~l~i~~~l~~~---~~~~~~---~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~ 346 (791)
+++++++++||+++++++.++..+... +..+.. ....+.++..++++++..++++++.+|++++..+.+.+|.+
T Consensus 148 ~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~ 227 (558)
T PRK10669 148 QIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELF 227 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 999999999999999888887655421 111111 11223334444555555667788888888888777778888
Q ss_pred HHHHHHHHHHHHH-HHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHH
Q 003861 347 VALCLLTVAGTSL-LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLA 425 (791)
Q Consensus 347 ~~~~l~~~~~~~~-la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~ 425 (791)
....+++++++++ .++.+|+|+++|||+||++++++++++++.+...+++++|.|+||+++|+++|+..+.+++..++.
T Consensus 228 ~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~ 307 (558)
T PRK10669 228 TLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLA 307 (558)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence 7777777777765 469999999999999999999999999998888899999999999999999999988777666666
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHH
Q 003861 426 LLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIG 505 (791)
Q Consensus 426 l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~ 505 (791)
+++..+++|+++++..++++|.++|+++.+|+.|+|+|+++++++..+.+.|+++++.|+.++.++++|++++|++.++.
T Consensus 308 ~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 308 TLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHhhhhhhcCCc--ch--hhhhhcccCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 506 RWAADFIDDKFGSE--DK--VEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 506 ~~l~~~l~~~~~~~--~~--~~~~~~~~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
.+...+..+...+. +. .++..+.+.+||++|||||++|+.++++|+ ++|++|++||.|++++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~----------~~g~~vvvId~d~~~~~~~~ 457 (558)
T PRK10669 388 ERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLL----------AAGIPLVVIETSRTRVDELR 457 (558)
T ss_pred hHHHHHhhhccccccccccccccccccccCCCEEEECCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHH
Confidence 66544332211110 00 111233456899999999999999999998 89999999999999999999
Q ss_pred hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcH
Q 003861 582 KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 582 ~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.|.++++||++|+++|+++|+++||+++++++||++|..++.++|+.+|+.+|+||++|++|.+.++++|||+|++|++
T Consensus 458 ~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~ 537 (558)
T PRK10669 458 ERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGER 537 (558)
T ss_pred HCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003861 662 ETSLQLGSKLLK 673 (791)
Q Consensus 662 ~~~~~la~~~l~ 673 (791)
+.++++++.+.+
T Consensus 538 ~~a~~i~~~l~~ 549 (558)
T PRK10669 538 EIARTMLELLET 549 (558)
T ss_pred HHHHHHHHHhcC
Confidence 999999887766
No 4
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=404.34 Aligned_cols=374 Identities=39% Similarity=0.563 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--C-CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 113 LGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--G-IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 113 l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--g-li~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
.+.+..+++.++.+.+++++|+|+|+++||+++|+++||. + +.++++.++.++|+|++++||.+|+|+|++++|+++
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhc
Confidence 4667778899999999999999999999999999999993 3 345678899999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCC
Q 003861 190 KF-AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELP 268 (791)
Q Consensus 190 ~~-~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~ 268 (791)
|+ .+..+..++.+++++.+... .. .+| .++..++++|.+++.||+++++++++|+|..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~-----------~~-~~g--------~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~ 146 (397)
T COG0475 87 RSVGLGVAQVGLTAPFLLGLLLL-----------LG-ILG--------LSLIAALFLGAALALSSTAIVLKILMELGLLK 146 (397)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH-----------HH-Hhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99 55555555544443322110 11 356 68999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 003861 269 TRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVA 348 (791)
Q Consensus 269 ~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~ 348 (791)
++.|++.++++++||+++++++++...+..++..+... +...+.....+.++....++|+.+++++++.+.+.+|.+..
T Consensus 147 ~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~-~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~ 225 (397)
T COG0475 147 TREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGF-ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFIL 225 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999999999999998886543333221 22334444555555555578999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccch-hHHHHhhhchHh-HHHHHHHHHHcccCChHHHHhhhHHHHHH
Q 003861 349 LCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR-TQIEADIRPFRG-LLLGLFFVTTGSSIDIELLFREWPNVLAL 426 (791)
Q Consensus 349 ~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~-~~i~~~l~~~~~-~f~~lFFv~vG~~l~l~~l~~~~~~~l~l 426 (791)
.++.++++.++++|.+|+|+++|||+||+++++++++ |+++++++++++ +|+|+||+.+|+++|++.+..++..++.+
T Consensus 226 ~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~ 305 (397)
T COG0475 226 FVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999888 899999999987 99999999999999999999888877778
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHH
Q 003861 427 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~ 506 (791)
+.+.++.|.+++++.++..|.++|++...|+.+.++||++++++..+.. +.++++.+.. +++++++.+|+.....+
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~---~v~~smi~t~i~~~~~~ 381 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTA---VVILSMITTPILPLLTP 381 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998866 3455554444 45556666666555555
Q ss_pred HHHhh
Q 003861 507 WAADF 511 (791)
Q Consensus 507 ~l~~~ 511 (791)
++.++
T Consensus 382 ~~~~~ 386 (397)
T COG0475 382 ILLKR 386 (397)
T ss_pred HHHHH
Confidence 55443
No 5
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=9.3e-44 Score=428.15 Aligned_cols=383 Identities=21% Similarity=0.326 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCcC----------CchhHHHHHHHHHHHHHHHHhhc
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIR----------NLTDVKVLSEWGILFLLFEMGLE 179 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli~----------~~~~l~~l~elgl~~lLF~~Gle 179 (791)
.+++++.++++++.+++.+++|+|+|.++|||++|+++|| +|+++ +.+.++.++++|++++||.+|+|
T Consensus 43 ~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 43 LFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 4467888899999999999999999999999999999999 46542 12468999999999999999999
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHH
Q 003861 180 LSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQ 259 (791)
Q Consensus 180 ldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~ 259 (791)
+|++.+|+.+|+++.+++.++++++++...+. ++++.... .......++++|.++|.||.+++.+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~-------------~~l~~~~~--~~~~~~~~l~~g~alS~Ts~pVv~r 187 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFS-------------FIFHQVSR--NVHQGTFILFLGVALSVTAFPVLAR 187 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-------------HHHhhccc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999987655431 12221100 0012345789999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003861 260 LLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAE 339 (791)
Q Consensus 260 lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~ 339 (791)
+|+|+|+++++.|+++++.++++|++++++++++..+...+..... .++.++..++++++.+++.+++++|+.++..+
T Consensus 188 iL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~--~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~ 265 (832)
T PLN03159 188 ILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLA--SLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPE 265 (832)
T ss_pred HHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999999999887665433221111 11222222333333333334444444443322
Q ss_pred h-ccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhch-HhHHHHHHHHHHcccCChHHHH
Q 003861 340 A-RSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF-RGLLLGLFFVTTGSSIDIELLF 417 (791)
Q Consensus 340 ~-~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~-~~~f~~lFFv~vG~~l~l~~l~ 417 (791)
. ...|.++.++++++++++++++.+|+|.++|||++|+++++.++++.+.++++++ .++|+|+||+++|+++|+..+.
T Consensus 266 ~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~ 345 (832)
T PLN03159 266 GETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ 345 (832)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc
Confidence 1 1346667777777888899999999999999999999999988889999999999 7999999999999999998885
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHH-HHH
Q 003861 418 RE--WPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVV-VLS 494 (791)
Q Consensus 418 ~~--~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~v-vlt 494 (791)
.. |..++.++++.+++|++++++.++++|+++++++.+|+.|++||+++++++..+.+.|+++++.|+++++++ ++|
T Consensus 346 ~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T 425 (832)
T PLN03159 346 GPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMT 425 (832)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHH
Confidence 42 444455566678899999999999999999999999999999999999999999999999999999988765 569
Q ss_pred HHhHhHHHHHHHHHHhh
Q 003861 495 MALTPLLNEIGRWAADF 511 (791)
Q Consensus 495 ~iltpll~~l~~~l~~~ 511 (791)
++++|++..++++-.++
T Consensus 426 ~i~~Plv~~ly~p~rk~ 442 (832)
T PLN03159 426 ALITPVVTVVYRPARRL 442 (832)
T ss_pred HHHHHHHHHHhCHHhhh
Confidence 99999999887765544
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-43 Score=354.43 Aligned_cols=374 Identities=29% Similarity=0.414 Sum_probs=329.0
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHH
Q 003861 118 LTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM 195 (791)
Q Consensus 118 ~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~l 195 (791)
..-+..+++++.++.|+|+||.+||+++|+++||+ |.+.++.....++|+|++++||.+|++++++++...+..++.-
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipg 91 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPG 91 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcch
Confidence 34577899999999999999999999999999994 8887777788999999999999999999999998877767666
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHH
Q 003861 196 GLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSAT 275 (791)
Q Consensus 196 a~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~ 275 (791)
++.|..+.+.... . +.++.| +++...+++|.++|.+|+.+..+-++|+++.+++.|+++
T Consensus 92 Al~qia~at~lg~------------g-L~~~lg--------ws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 92 ALAQIALATLLGM------------G-LSSLLG--------WSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HHHHHHHHHHHHh------------H-HHHHcC--------CCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 7777665543322 2 356777 688899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhc---cC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 003861 276 LGILLLQDIAVVPLLVILPVLESQ---VS---ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVAL 349 (791)
Q Consensus 276 l~~~~l~Di~~v~~l~i~~~l~~~---~~---~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~ 349 (791)
+|..+++|++.++.++..+.+++- .+ .+....+..++.|...+..++.+++|.+.||++++++.+.++|.+.+.
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~ 230 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLA 230 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999998877542 11 122334556777888888899999999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHH
Q 003861 350 CLLTVAGTSL-LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 428 (791)
Q Consensus 350 ~l~~~~~~~~-la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l 428 (791)
.+.++++.++ .++.+|+|..+|||++||++++++.+|+..+..-|+++.|..+||+++||..|+..+.+....++..++
T Consensus 231 vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatll 310 (408)
T COG4651 231 VLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLL 310 (408)
T ss_pred HHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHH
Confidence 8888888776 778999999999999999999999999999999999999999999999999999999887777777778
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHHHH
Q 003861 429 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWA 508 (791)
Q Consensus 429 ~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~~l 508 (791)
.++.+|-+..++..+.+|.|.|+++.++..+.|.|||+++++..+.+.+++++.--..++...+++++..|+.....++.
T Consensus 311 ii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~ 390 (408)
T COG4651 311 IILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRY 390 (408)
T ss_pred HHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999998777888888999999999999877765
Q ss_pred Hhhh
Q 003861 509 ADFI 512 (791)
Q Consensus 509 ~~~l 512 (791)
.++.
T Consensus 391 ~~~~ 394 (408)
T COG4651 391 QRSA 394 (408)
T ss_pred hhhh
Confidence 5443
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5e-38 Score=367.53 Aligned_cols=369 Identities=20% Similarity=0.203 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccCC--c--CCchhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGI--I--RNLTDVKVLSEWGILFLLFEMGLELSLARLKA 187 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~gl--i--~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~ 187 (791)
.+++...++++++.+++.+++|+++|.+++|+++|+++||.++ + ++.+..+.++++++++++|.+|+|+|++.+|+
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 4566777888999999999999999999999999999999543 3 44567899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-
Q 003861 188 LAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE- 266 (791)
Q Consensus 188 ~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~- 266 (791)
.+++++.+++.++++|+++++.+ +++++| ++|..++++|+++++||++++.+++++.++
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~------------~~~l~g--------~~~~~alllgai~s~Td~a~v~~iL~~~~l~ 145 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLF------------AHWLLG--------LDWLEGLLLGAIVGSTDAAAVFSLLRGKGLN 145 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHhc--------CCHHHHHHHhhhhccCchHHHHHHHhccCCC
Confidence 99999999999999998776544 356777 799999999999999999999999999995
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Q 003861 267 LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEA 345 (791)
Q Consensus 267 ~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~ 345 (791)
.+++.++++.+++.+||.++++++.++..+...+.. ..+.. ...+...+++.++++++.+++..+++++.. ...++.
T Consensus 146 l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~-~~~~~~ 223 (562)
T PRK05326 146 LKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGF-LLLFLQQFGLGALIGLLGGWLLVQLLNRIA-LPAEGL 223 (562)
T ss_pred cchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhH
Confidence 788999999999999999998877766544332221 22222 223334444444444555677777777662 223456
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc--chhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHH
Q 003861 346 FVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN--FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNV 423 (791)
Q Consensus 346 ~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~--~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~ 423 (791)
+..+++.+++.++++++.+|.|+++|+|++|++++|.+ .++.+++..+.+.+++.++||+++|+.+|++.+.+.++..
T Consensus 224 ~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~ 303 (562)
T PRK05326 224 YPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPA 303 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66677777888889999999999999999999999874 4456777777788899999999999999999887654443
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcch-hhhhHHHHHHHHHHHhHhHH
Q 003861 424 LAL-LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL-ELNKLLIIVVVLSMALTPLL 501 (791)
Q Consensus 424 l~l-~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~-~~~~~iv~~vvlt~iltpll 501 (791)
+.+ ++..+++|++++++....+++++||+.++||. ++||+++++++..+...|..+. ..+.++++++++|+++.+..
T Consensus 304 l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~t 382 (562)
T PRK05326 304 LLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTT 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhh
Confidence 333 34567889999999888899999999999995 8999999999999999998864 55677777788888886554
Q ss_pred HH
Q 003861 502 NE 503 (791)
Q Consensus 502 ~~ 503 (791)
..
T Consensus 383 l~ 384 (562)
T PRK05326 383 LP 384 (562)
T ss_pred HH
Confidence 43
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=6e-33 Score=296.64 Aligned_cols=270 Identities=43% Similarity=0.708 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHH
Q 003861 122 AVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQ 199 (791)
Q Consensus 122 ~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~ 199 (791)
+++.+.+.++||+|+|++++++++|+++||. |.+++.+.++.++++|+.+++|.+|+|+|++.+|+++|++..++..+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999994 66777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003861 200 VVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGIL 279 (791)
Q Consensus 200 ~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~ 279 (791)
+++++++++.. ..++++ .++..++++|+++++||++++.++++|+|..+++.|+++++++
T Consensus 82 ~~~~~~~~~~~------------~~~~~~--------~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~ 141 (273)
T TIGR00932 82 VLVPGVLLGLL------------LGHLLG--------LALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGIL 141 (273)
T ss_pred HHHHHHHHHHH------------HHHHHC--------CCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHH
Confidence 99995444432 245666 6899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 003861 280 LLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSL 359 (791)
Q Consensus 280 ~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~ 359 (791)
++||+.+++++.+......+.+.+.. .....+...+++..+.++.++|..+++.++..+.+..|.....++.+++..++
T Consensus 142 ~~~D~~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (273)
T TIGR00932 142 LFQDIAVVPLLALLPLLATSASTEHV-ALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAY 220 (273)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 99999999998887665442222211 12223334444444455667778888888776655667777778888888889
Q ss_pred HHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCC
Q 003861 360 LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 412 (791)
Q Consensus 360 la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~ 412 (791)
+++.+|+|+.+|||++|+++++.+.+++++++++++.++|.|+||+++|+++|
T Consensus 221 la~~~g~s~~lgaf~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 221 FADLLGLSMALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHhCCcHHHHHHHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 99999999999999999999998888889999999999999999999999886
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.2e-37 Score=348.43 Aligned_cols=359 Identities=29% Similarity=0.445 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccC--CcCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 003861 120 FLAVTVIVVPVFKIARASPILGFFFAGIVLNQLG--IIRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 196 (791)
Q Consensus 120 lL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~g--li~~~-~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la 196 (791)
+++.+.+.+.++||+++|++++|+++|+++||.+ +++++ +..+.++++|+.+++|.+|+|+|.+.+|+++++.+.++
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~ 83 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALG 83 (380)
T ss_dssp --------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-------------
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 3445666666899999999999999999999964 45666 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhhHHHH---hhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHH
Q 003861 197 LTQVVLSTLAFTAFELPPNGAVGTRILEF---LFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGS 273 (791)
Q Consensus 197 ~~~~llt~~~~~~~~~p~~~~lG~~~~~~---l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~ 273 (791)
+.++++++++++... ++ ..| +++.+++++|+++++|||+++.++++|++..+++.++
T Consensus 84 ~~~~~~~~~~~~~~~------------~~~~~~~~--------~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~ 143 (380)
T PF00999_consen 84 LVGFLLPFILVGFLL------------SFFLFILG--------LSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGR 143 (380)
T ss_dssp --------------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHH
T ss_pred cceeeehhhHHHHHH------------HHhhccch--------hhhHHHhhhHHhhhcccccchhhhhhhhhcccccccc
Confidence 999999887633331 21 344 6899999999999999999999999888888999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHH
Q 003861 274 ATLGILLLQDIAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA--RSSEAFVALC 350 (791)
Q Consensus 274 l~l~~~~l~Di~~v~~l~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~--~~~e~~~~~~ 350 (791)
++.+++.+||+++++++.+....... ...+.+... ..++.. .+..++.++..+++.++..+. +.++.....+
T Consensus 144 ~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (380)
T PF00999_consen 144 LLLSESVINDIIAIILLSILISLAQASGQSSLGQLL-LSFLWI----ILIGIVIGLLFGWLLRRLIRRASPSSEIFILLV 218 (380)
T ss_dssp HHTTTTTTTTTTTTTTT---------------------------------------------------------------
T ss_pred hhhhhchhhccchhhhhhhhhhhhcccccccccchh-cchhhh----hhhheeeecccchHHHHhhhhccccchhhHHHH
Confidence 99999999999999888776555421 112222211 112222 222233334445555555444 4566677777
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchH-hHHHHHHHHHHcccCChHHHH---hhhHHHHHH
Q 003861 351 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFR-GLLLGLFFVTTGSSIDIELLF---REWPNVLAL 426 (791)
Q Consensus 351 l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~-~~f~~lFFv~vG~~l~l~~l~---~~~~~~l~l 426 (791)
+++++..++++|.+|.|+.+|+|++|+++++.+.++++++++++++ +++.|+||+.+|+++|++.+. ..|...+.+
T Consensus 219 l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~ 298 (380)
T PF00999_consen 219 LALILLLYGLAEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLL 298 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhccccccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHH
Confidence 8888888999999999999999999999998888888999999997 999999999999999998883 456656666
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHH
Q 003861 427 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 503 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~ 503 (791)
.+..+++|.+++++..+..|.++|++..+|+.+.+||+++++++..+.+.|.++++.++.++.++++|++++|+..+
T Consensus 299 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 299 LIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp ------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 66677999999999999999999999999999999999999999999999999999999999999999998877654
No 10
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-31 Score=285.12 Aligned_cols=363 Identities=20% Similarity=0.188 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccCC----cCCchhHHHHHHHHHHHHHHHHhhcCChHHH
Q 003861 110 INDLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGI----IRNLTDVKVLSEWGILFLLFEMGLELSLARL 185 (791)
Q Consensus 110 i~~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~gl----i~~~~~l~~l~elgl~~lLF~~Gleldl~~L 185 (791)
++.+++...+++..+.+...++.|++.|..+.++..|++.|.-|+ +++.+.-..++++++++++|..|+..+++.+
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~ 84 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSF 84 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHH
Confidence 344556666778889999999999999999999999999998553 3466778899999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC
Q 003861 186 KALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG 265 (791)
Q Consensus 186 k~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~ 265 (791)
|...++++.+++.++++|..+++.+ ++|+++ .+|.+++++|+++..|+.+.|..+|.+++
T Consensus 85 r~a~~palsLATlGVl~Ts~Ltg~a------------A~~ll~--------l~wle~~LiGAiVgSTDAAAVF~lL~~~n 144 (574)
T COG3263 85 RVAAGPALSLATLGVLITSGLTGVA------------AAYLLN--------LDWLEGLLIGAIVGSTDAAAVFSLLGGKN 144 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH------------HHHHhc--------cHHHHHHHHHHhhccccHHHHHHHHccCC
Confidence 9999999999999999999887765 478998 89999999999999999999999998888
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHHHHHH-HHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 003861 266 ELPTRFGSATLGILLLQDIAVVPLLVIL-PVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSE 344 (791)
Q Consensus 266 ~~~~~~g~l~l~~~~l~Di~~v~~l~i~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e 344 (791)
++.+.+.++.-++.-||.+++++...+ ...+.+ ..+..+.++..+++..+..+++++.++++..++.+++ ...+.
T Consensus 145 -l~erv~stLEiESGtNDPmAvfLTitlieli~~g-et~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~--nLd~G 220 (574)
T COG3263 145 -LNERVASTLEIESGSNDPMAVFLTITLIELIAGG-ETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRI--NLDSG 220 (574)
T ss_pred -hhhhhhhhEEeecCCCCceeeehhHHHHHHHhcc-ccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh--ccccc
Confidence 588899999989999999997766544 444433 2224344445577888888788888888888888877 33466
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc--cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhh-hH
Q 003861 345 AFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WP 421 (791)
Q Consensus 345 ~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~--~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~-~~ 421 (791)
++..+++...+..+.+++.+|.|+.++.+++|++++|. +.+|.+.+..+.+.++...++|...|+..+++++... .+
T Consensus 221 L~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavP 300 (574)
T COG3263 221 LYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIP 300 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHH
Confidence 77888888888888999999999999999999999998 5678999999999999999999999999999999774 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhh-HHHHHHHHHHHh
Q 003861 422 NVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNK-LLIIVVVLSMAL 497 (791)
Q Consensus 422 ~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~-~iv~~vvlt~il 497 (791)
.++..+..++++|++++++...-+++++||..+++|. +-||.+++++|.+.+..|.-+.+++- +..+++++|.++
T Consensus 301 ailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 301 AILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred HHHHHHHHHHHHhHHHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 3333444566889999998888889999999999995 99999999999999999988877664 444445555554
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=1.4e-29 Score=294.07 Aligned_cols=341 Identities=14% Similarity=0.086 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCc------hhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003861 116 DTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNL------TDVKVLSEWGILFLLFEMGLELSLARLKA 187 (791)
Q Consensus 116 ~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~------~~l~~l~elgl~~lLF~~Gleldl~~Lk~ 187 (791)
..+++++++++..++.+|+.+|..+.++++|+++||. +++++. .....++++++++++|.+|++++.+.+|+
T Consensus 18 lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr 97 (810)
T TIGR00844 18 VGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLK 97 (810)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445566777777777899999999999999999995 545422 22233999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHh-hcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHh---
Q 003861 188 LAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFL-FHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE--- 263 (791)
Q Consensus 188 ~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l-~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e--- 263 (791)
.|+.++.+++.++.++++++++++ +++ +| ++|..|+++|+++++|+|+.+..+++.
T Consensus 98 ~wrsV~rLl~~~M~lT~livAL~a------------~~Li~G--------L~~~~ALLLGAILAPTDPVLAssV~kg~~~ 157 (810)
T TIGR00844 98 HWVSVTMLLVPVMTSGWLVIALFV------------WILVPG--------LNFPASLLMGACITATDPVLAQSVVSGTFA 157 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------------HHHHcC--------CCHHHHHHHHhhhcCCcHHHHHHHHhcccc
Confidence 999999999999999998877652 344 46 799999999999999999999999883
Q ss_pred cCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhh--ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003861 264 KGELPTRFGSATLGILLLQDIAVVPLLVILPVLES--QVSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA 340 (791)
Q Consensus 264 ~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~--~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~ 340 (791)
.+ ++.+...++.+++.+||.++++++.+...+.. +... .....++..++..+++.++++++.+|+..++.++..+.
T Consensus 158 ~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr 236 (810)
T TIGR00844 158 QK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGK 236 (810)
T ss_pred cc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 56788999999999999999887765433322 1111 11111223444444444555555567888888877543
Q ss_pred c--cchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccc-hhH--HHHhhhchHhHHHHHHHHHHcccCChHH
Q 003861 341 R--SSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNF-RTQ--IEADIRPFRGLLLGLFFVTTGSSIDIEL 415 (791)
Q Consensus 341 ~--~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~-~~~--i~~~l~~~~~~f~~lFFv~vG~~l~l~~ 415 (791)
. ..+.+..+.+++++.++.+++.+|.|+++++|+||+++++... .++ .....+.+..++..++|+++|+.+.+..
T Consensus 237 ~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~ 316 (810)
T TIGR00844 237 NIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKD 316 (810)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhh
Confidence 3 4455666666677777888999999999999999999998632 221 1112222345888999999999998877
Q ss_pred HHh------hhHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCC
Q 003861 416 LFR------EWPNVLALLAGLIIIKTLIISAIGPR--VGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGV 478 (791)
Q Consensus 416 l~~------~~~~~l~l~l~~ll~K~l~~~~~~~~--~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~ 478 (791)
+.. .|..+++.++++++.|++++++...+ ...+|+|++++||+ ++||..++.++.++.+.+.
T Consensus 317 l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWF-GpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 317 FNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHF-GPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheee-ccccHHHHHHHHHHHHhhh
Confidence 643 24444444455567787777665333 34789999999995 9999999999999987764
No 12
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.1e-29 Score=298.24 Aligned_cols=384 Identities=23% Similarity=0.332 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCc----------CCchhHHHHHHHHHHHHHHHHhhc
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGII----------RNLTDVKVLSEWGILFLLFEMGLE 179 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli----------~~~~~l~~l~elgl~~lLF~~Gle 179 (791)
-+++++.+++++..++..++|++|+|.++.++++||++|| +|-. .....++.++.+|..+++|..|+|
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~ 102 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLE 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888899999999999999999999999999999999 3432 123678999999999999999999
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccc--cCCHHHHHHHHHHhhhccHHHH
Q 003861 180 LSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVN--IRSIDEAVVIGAALSLSSSAFV 257 (791)
Q Consensus 180 ldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~--~~~~~~alllga~ls~TS~avv 257 (791)
+|.+.+|+..|++..+++.++++++.....+.. ...+...+... .....+-..++.+.+.||.+++
T Consensus 103 ~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~ 170 (769)
T KOG1650|consen 103 IDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAF------------LLSDTKADKEDGALFLPFEILFILSAQSITSFPVL 170 (769)
T ss_pred hhHHHhhccCceeEEEEEEEeehhhHhhhhhhh------------hccccccccccccccccHHHHHHHHHhhcchhHHH
Confidence 999999999999999999999998765443321 11111111000 0112255778899999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003861 258 LQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVV 337 (791)
Q Consensus 258 ~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i 337 (791)
..+|.|+++.+++.|+++++.++++|++++.++.+...+.+....+.... .+.+...+++ .++.-++.++++.|+
T Consensus 171 ~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~l~~~~v~~p~~~wi 245 (769)
T KOG1650|consen 171 ARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRS-VWDLVLVIGF----VLFLFFVVRPLMKWI 245 (769)
T ss_pred HHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHH-HHHHHHHHHH----HHheeeehhhhHHHH
Confidence 99999999999999999999999999999988877666654432211111 1122222222 233345667788887
Q ss_pred Hhhc-----cchHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHhHhcCCc-cchhHHHHhhhch-HhHHHHHHHHHHcc
Q 003861 338 AEAR-----SSEAFVALCLLTVAGTSLLTQKLG-FSDTLGAFLAGAILAET-NFRTQIEADIRPF-RGLLLGLFFVTTGS 409 (791)
Q Consensus 338 ~~~~-----~~e~~~~~~l~~~~~~~~la~~lG-ls~~LgAflaGl~l~~~-~~~~~i~~~l~~~-~~~f~~lFFv~vG~ 409 (791)
.+.. ..+.+....+..++.++.+++.++ +++.+|||+.|+++++. |.+..+.++++.+ .++|+|+||+..|+
T Consensus 246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~ 325 (769)
T KOG1650|consen 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL 325 (769)
T ss_pred hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7653 234556666677777888888888 88899999999999986 7889999999998 69999999999999
Q ss_pred cCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHH
Q 003861 410 SIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 489 (791)
Q Consensus 410 ~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~ 489 (791)
+.|+..+.. |......+.....+|++++...+.++|+|+|+++.+|..|+.+|.+++++...+.+.+.++.+.|.++++
T Consensus 326 k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl 404 (769)
T KOG1650|consen 326 KTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVL 404 (769)
T ss_pred ceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHH
Confidence 999999877 6666667777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhHhHHHHHHHHHHhhhh
Q 003861 490 VVVLSM-ALTPLLNEIGRWAADFID 513 (791)
Q Consensus 490 ~vvlt~-iltpll~~l~~~l~~~l~ 513 (791)
++++++ +.+|++...+++..++..
T Consensus 405 ~alv~t~I~~~~l~~~y~p~~~~~~ 429 (769)
T KOG1650|consen 405 MALVSTFITPPLLMFLYDPTRKYHG 429 (769)
T ss_pred HHHHHHhhHHHHHHHhcchhhhcCc
Confidence 887755 556888878877665544
No 13
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=1.1e-26 Score=268.78 Aligned_cols=326 Identities=17% Similarity=0.185 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccCC---cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHH
Q 003861 119 TFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGI---IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM 195 (791)
Q Consensus 119 llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~gl---i~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~l 195 (791)
.+++++.....+++|+|+|.+++++++|+++||.+. ++.++ +.+..+++.+++|.+|+++|++.+|++++.++.+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~l 82 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALI 82 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455566677789999999999999999999998432 22222 3345589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHH
Q 003861 196 GLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSAT 275 (791)
Q Consensus 196 a~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~ 275 (791)
++.++++|+++++.+ .+++++ ++|..|+++|+++++|||+++.+++++.+ .+++..+++
T Consensus 83 a~~~vlit~~~v~~~------------~~~~~~--------l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il 141 (525)
T TIGR00831 83 AFLLVVVTTVVVGFS------------LNWILG--------IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILL 141 (525)
T ss_pred HHHHHHHHHHHHHHH------------HHHHhc--------ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHH
Confidence 999999998876654 234566 79999999999999999999999999987 577889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 003861 276 LGILLLQDIAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTV 354 (791)
Q Consensus 276 l~~~~l~Di~~v~~l~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~ 354 (791)
.+++++||..+++++.+...+..+ +..+.+... ..+....++.++++++..|+..++.++. .+.+.....++++++
T Consensus 142 ~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~-~~f~~~~~~gi~vG~~~g~~~~~l~~~~--~~~~~~~~~l~l~~~ 218 (525)
T TIGR00831 142 EGESLLNDGAALVVFAIAVAVALGKGVFDPLNAA-LDFAVVCVGGIAAGLAVGYLAYRLLRAK--IDDPLVEIALTILAP 218 (525)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 999999999999988877655442 222333222 2222332333333333345555555442 223334456677788
Q ss_pred HHHHHHHHHhCChHHHHHHHHhHhcCCccc----hhHH----HHhhhchHhHHHHHHHHHHcccCChHHHHhhh------
Q 003861 355 AGTSLLTQKLGFSDTLGAFLAGAILAETNF----RTQI----EADIRPFRGLLLGLFFVTTGSSIDIELLFREW------ 420 (791)
Q Consensus 355 ~~~~~la~~lGls~~LgAflaGl~l~~~~~----~~~i----~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~------ 420 (791)
+.+++++|.+|.|+++|+|++|+++++... +++. .+..+.+..++.+++|+++|++++.. +.+.|
T Consensus 219 ~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~-~~~~~~~~~~~ 297 (525)
T TIGR00831 219 FAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT-IFSAWKEILVA 297 (525)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhh
Confidence 888999999999999999999999998521 2222 33344445688899999999998642 21111
Q ss_pred HH--H-------HHHHHHHHHHHHHHHHHhh--h-----hcCCCHHHHHHHHHHHhhhhhHHHHHHHH
Q 003861 421 PN--V-------LALLAGLIIIKTLIISAIG--P-----RVGLTLQESVRIGLLLSQGGEFAFVVFSL 472 (791)
Q Consensus 421 ~~--~-------l~l~l~~ll~K~l~~~~~~--~-----~~~~~~r~~~~~g~~l~~rG~~~lvla~~ 472 (791)
+. . +.+....+.+|++.++... + ..+.+||+.+.++|. ++||.++++++..
T Consensus 298 ~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al~ 364 (525)
T TIGR00831 298 PAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALALS 364 (525)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHHH
Confidence 10 1 1111122344543322211 0 124689999999996 9999999988764
No 14
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-25 Score=253.13 Aligned_cols=339 Identities=22% Similarity=0.224 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccC--CcCC--chhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 114 GLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLG--IIRN--LTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~g--li~~--~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
.+...+++..+...+.+.+|++.|.++.+++.|++.||.+ +.+. ...-+.+..+++..++|..|+++|.+++|+++
T Consensus 8 ~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~ 87 (429)
T COG0025 8 LFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVW 87 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhH
Confidence 4556667788889999999999999999999999999843 3332 22344555999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCC
Q 003861 190 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPT 269 (791)
Q Consensus 190 ~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~ 269 (791)
+.+..+++..+++|++..+.+ .+++++ .+++..|+++|+++++|||+++.+++++.+ .++
T Consensus 88 ~~I~~La~~~v~it~~~~g~~------------~~~l~~-------~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ 147 (429)
T COG0025 88 RSILVLALPLVLITALGIGLL------------AHWLLP-------GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPK 147 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHhC-------ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCH
Confidence 999999999999999877765 344443 178999999999999999999999999977 688
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHH
Q 003861 270 RFGSATLGILLLQDIAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAF 346 (791)
Q Consensus 270 ~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~--~~e~~ 346 (791)
+..+++.+++++||..+++++.+...+..+ +..+..+.. ..++..+.+..+++++.+++..++.+++.+.. +....
T Consensus 148 ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~-~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~ 226 (429)
T COG0025 148 RIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWAL-LLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLE 226 (429)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHH
Confidence 999999999999999999998877655443 222323333 33444444444445555677788888876532 34445
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc----c----chhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh
Q 003861 347 VALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET----N----FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR 418 (791)
Q Consensus 347 ~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~----~----~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~ 418 (791)
..+.+...++.+.+++.+|.|+.++++++|++.++. . .+.+..+..+.+.-++..+.|+.+|++++...+..
T Consensus 227 ~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~ 306 (429)
T COG0025 227 TLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA 306 (429)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 677788888899999999999999999999988521 1 12333334444556899999999999999998865
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHhhhhc------CCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003861 419 E-WPNVLALLAGLIIIKTLIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVVFSLAN 474 (791)
Q Consensus 419 ~-~~~~l~l~l~~ll~K~l~~~~~~~~~------~~~~r~~~~~g~~l~~rG~~~lvla~~a~ 474 (791)
. ++.++..+...+++|++.++...... ..+++++.+++|. ++||.++++++....
T Consensus 307 ~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p 368 (429)
T COG0025 307 LGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIP 368 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHch
Confidence 4 56666777788899999998887763 3799999999996 999999999988764
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.93 E-value=2.5e-23 Score=240.92 Aligned_cols=325 Identities=14% Similarity=0.134 Sum_probs=227.9
Q ss_pred HHc-CCChHHHHHHHHHhhccc--CC--cCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 003861 132 KIA-RASPILGFFFAGIVLNQL--GI--IRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 205 (791)
Q Consensus 132 ~rl-~lP~ivg~ilaGillGp~--gl--i~~~-~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~ 205 (791)
++. ++|..+..++.|+++|+. +. .+.. -.-+.+-.+.+..++|++|++++.+.++++.+.++.+++++++++++
T Consensus 30 ~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~ 109 (559)
T TIGR00840 30 KVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAF 109 (559)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 599999999999999973 21 2111 12345566789999999999999999999999999999999999998
Q ss_pred HHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHH
Q 003861 206 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIA 285 (791)
Q Consensus 206 ~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~ 285 (791)
+++...+.. ..+.+... ..++|..|+++|+++|+|||+++.+++++.+ .+.+.-.++.+++++||..
T Consensus 110 ~ig~~l~~~---------~~~~~~~~---~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDav 176 (559)
T TIGR00840 110 VIGLSLYGI---------CLIGGFGS---IDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAV 176 (559)
T ss_pred HHHHHHHHH---------Hhhccccc---cCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccH
Confidence 877653310 00111000 1158999999999999999999999999998 5778999999999999999
Q ss_pred HHHHHHHHHHHhhcc-Cc-ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 003861 286 VVPLLVILPVLESQV-SE-SV---WPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLL 360 (791)
Q Consensus 286 ~v~~l~i~~~l~~~~-~~-~~---~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~l 360 (791)
+++++.++..+...+ +. +. .......+...+++++ ++++.+++..++.++.... +.....++++++++.+.+
T Consensus 177 aIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGil-iG~v~G~l~~~l~r~~~~~--~~~e~~l~l~~~yl~Y~l 253 (559)
T TIGR00840 177 TVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLL-VGVVFGFLVAFITRFTHHI--RQIEPLFVFLISYLSYLF 253 (559)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHH
Confidence 999987766554311 11 11 1111112223334333 3333446666666665332 234455667777888889
Q ss_pred HHHhCChHHHHHHHHhHhcCCc---cchhH----HHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHH
Q 003861 361 TQKLGFSDTLGAFLAGAILAET---NFRTQ----IEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIII 433 (791)
Q Consensus 361 a~~lGls~~LgAflaGl~l~~~---~~~~~----i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~ 433 (791)
+|.+|.|++++++++|+++++. +.+++ +....+.+..+...+.|+++|+.+........|..++..++..+++
T Consensus 254 AE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 254 AETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIY 333 (559)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999753 22222 3344445556888999999999753221111344444444556788
Q ss_pred HHHHHHHhhhh------cCCCHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003861 434 KTLIISAIGPR------VGLTLQESVRIGLLLSQGGEFAFVVFSLA 473 (791)
Q Consensus 434 K~l~~~~~~~~------~~~~~r~~~~~g~~l~~rG~~~lvla~~a 473 (791)
|++.++...+. .+.++++.++++|+ ++||.++++++...
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l 378 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLL 378 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhC
Confidence 99888765532 35799999999995 99999999988654
No 16
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.7e-25 Score=225.88 Aligned_cols=207 Identities=20% Similarity=0.195 Sum_probs=166.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH--hcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR--KLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~--~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++|+|+|++|..+|+.|. ++|++|++||.|++++++.. +.+.+++.||++|+++|++||+++||+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~----------~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS----------EEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcHHHHHHHHHHH----------hCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 5899999999999999998 89999999999999999954 48999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 690 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~ 690 (791)
++|++|+.|+.+|+.+++.+...++|||+++++|.+.+++.|+|.+++|+.+++.++++.+.. |+..+++.
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~-----p~~~~~~~---- 142 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVT-----PGALDVLE---- 142 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcC-----CChheEEe----
Confidence 999999999999999999765567999999999999999999999999999999999999887 77766653
Q ss_pred cc-cccceeeeecCCC-chhhcccccCCcchhhhhhccCCC-CCCCCccc-cccCCCCCCCCCCCCceeeeeccCCCC
Q 003861 691 NS-MEIQAQEVLSQKD-DQEFDIMKPLQVRVADIVEAEKTI-PSTSNDDK-LSREDNTDTAGEDAKGVLYCELNGTNN 764 (791)
Q Consensus 691 ~~-~~~~~~e~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~~-~~~~p~~~~~~~~gd~~l~~~~~~~~~ 764 (791)
.. ++..+.+..+..+ ...++++++++.|. |.+. .-..-+++ ....|.+++.+++||++..++...+-+
T Consensus 143 ~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~------~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~~~~i~ 214 (225)
T COG0569 143 LAGGDAEVIEEKVAEDSPLAGKTLRELDLRL------PYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGAPEALR 214 (225)
T ss_pred ecCCcceEEEEEecCCCccCCcCHHHhcccC------CCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEcHHHHH
Confidence 22 1333334333332 44566666655211 1111 00111222 678899999999999999998776544
No 17
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.91 E-value=2.5e-22 Score=223.01 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=123.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++|++|||+|++|+.++++|+ ++|.++++||.|+ .++..+++.++++||++|+++|++||+++|+++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~----------~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLR----------QRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHH----------HCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEE
Confidence 4789999999999999999998 7899999999873 456666789999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
+++++||++|+.+++++|+++|+++++|+++|+++.++++++|+|.|++|+..+|+++++.+..
T Consensus 307 I~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 307 LALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred EEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999987754
No 18
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.87 E-value=8.3e-22 Score=182.91 Aligned_cols=116 Identities=36% Similarity=0.532 Sum_probs=110.1
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
|+|||+|++|+.+++.|. +.+++|+++|.|++.++.+++.++++++||++|+++|+++|+++|+.+++++
T Consensus 1 vvI~G~g~~~~~i~~~L~----------~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK----------EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-SHHHHHHHHHHH----------HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCCHHHHHHHHHHH----------hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 689999999999999998 6777999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcC
Q 003861 614 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILE 659 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p 659 (791)
++|+.|+.+++.+|+++|+.+++++++++++.+.|+++|+|.||+|
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 9999999999999999999999999999999999999999999987
No 19
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.83 E-value=4.9e-20 Score=211.06 Aligned_cols=203 Identities=20% Similarity=0.210 Sum_probs=165.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++|++|||+|++|+.+++.|. +.|++|++||.|+++++++++. +..+++||++++++|+++++++|+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~----------~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLE----------KEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCC
Confidence 3689999999999999999998 7899999999999999998874 688999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 687 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~ 687 (791)
++++++++|+.|+.+++.+|+.++. +++++++++++.+.++++|+|.|+.|+..++..+++.+.. ++..+.. .
T Consensus 300 ~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~-----~~~~~~~-~ 372 (453)
T PRK09496 300 AFIALTNDDEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRR-----GDIVAVH-S 372 (453)
T ss_pred EEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhc-----cchhhhh-h
Confidence 9999999999999999999999765 8999999999999999999999999999999999988877 4443322 1
Q ss_pred HHhcccccceeeeecCCCc-hhhcccccCCcc----hhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCC
Q 003861 688 LVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVR----VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGT 762 (791)
Q Consensus 688 ~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~i~----~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~ 762 (791)
+ ..++..+.|+.+..+. ..++++++++.+ +..+.| +++. ..|++++.+++||++.+++.+..
T Consensus 373 ~--~~~~~~~~~~~v~~~s~~~g~~l~el~l~~~~~i~~i~r----------~~~~-~~p~~~~~l~~gD~l~v~~~~~~ 439 (453)
T PRK09496 373 L--RRGAAEAIEAVAHETSKVVGKPLKDLKLPKGVLIGAIVR----------GGEV-IIPTGDTVIEPGDHVIVFVLDKK 439 (453)
T ss_pred h--cCCcEEEEEEEeCCCChhccCCHHHcCCCCCCEEEEEEE----------CCEE-EcCCCCcEECCCCEEEEEEcCcc
Confidence 1 2234566676665332 244555544322 222222 3444 67999999999999999998776
No 20
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.77 E-value=1.8e-18 Score=198.26 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=161.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
|++|||+|++|+.+++.|. +.|++|+++|.|+++++.+++ .+.++++||++++++|++++++++|.+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~----------~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLS----------GENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 7999999999999999998 889999999999999999886 78999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHH--HHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDL--KKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLR 686 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~---~~~L--~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~ 686 (791)
++++|+.|..++..+|+++|+.++|+++++.++ .+.+ +++|+|.|+.|+..+|..+++.+.. |...+.+.
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~-----~~~~~~~~ 146 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEY-----PGALDVEE 146 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcC-----CCceEeee
Confidence 999999999999999999999999999988877 3444 7899999999999999999987765 43332221
Q ss_pred HHHhcccccceeeeecCCCc-hhhcccccCC-------cchhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeee
Q 003861 687 QLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQ-------VRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCE 758 (791)
Q Consensus 687 ~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~-------i~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~ 758 (791)
+ .+.+..+.|+.++.+. ..+++++++. +++..+.| +++ ...|++++++++||++.++|
T Consensus 147 --~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r----------~~~-~~~p~~~~~l~~gD~l~v~g 212 (453)
T PRK09496 147 --F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR----------GGR-LIIPRGDTVIEAGDEVYFIG 212 (453)
T ss_pred --e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE----------CCE-EEcCCCCcEecCCCEEEEEe
Confidence 1 1234667777665432 2333333332 22222322 233 34699999999999999999
Q ss_pred ccCCCC
Q 003861 759 LNGTNN 764 (791)
Q Consensus 759 ~~~~~~ 764 (791)
.+..-+
T Consensus 213 ~~~~l~ 218 (453)
T PRK09496 213 AREHIR 218 (453)
T ss_pred CHHHHH
Confidence 877544
No 21
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.2e-16 Score=175.49 Aligned_cols=343 Identities=15% Similarity=0.156 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHHhhccc------CCcC---CchhH--HHHHHHHHHHHHHHHhhc
Q 003861 114 GLDTLTFLAVTVIVVPVFKIAR---ASPILGFFFAGIVLNQL------GIIR---NLTDV--KVLSEWGILFLLFEMGLE 179 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~---lP~ivg~ilaGillGp~------gli~---~~~~l--~~l~elgl~~lLF~~Gle 179 (791)
++..+++|+++.+.++++++-| +|.-+.-++.|+++|-. +..+ ....+ +.+-.+-+.-+.|..|.+
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~ 116 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYS 116 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccce
Confidence 3444567888999999999988 99999999999999951 2222 11111 245566778899999999
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHH
Q 003861 180 LSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQ 259 (791)
Q Consensus 180 ldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~ 259 (791)
++.+.++++...+...+..++.+++.++++.+ ++++. ......++|.+++.+|+++|+|+|..++.
T Consensus 117 l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv-------------~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLa 182 (575)
T KOG1965|consen 117 LKKKQFFRNIGSILLFAIFGTFISAVIIGAGV-------------YLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLA 182 (575)
T ss_pred echhhhhhhhHHHHHhhhcceeeehhHHhhHH-------------HHHhc-ccccccccHHHHHHHhhHhcccCchHHHH
Confidence 99999999999999999999888876655432 23322 12223479999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003861 260 LLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPM--LVKESLKALAGLGLLSLGGKYLLRRVFEVV 337 (791)
Q Consensus 260 lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i 337 (791)
++++.+ .+...-.++.|++++||..+++++..+..+..... +.|.. .+..++....+-..+++..+++.-.+++.+
T Consensus 183 Ifnel~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~-~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~ 260 (575)
T KOG1965|consen 183 IFNELG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSL-NDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFL 260 (575)
T ss_pred HHHHhC-CCcceeeeeecchhccchhHHHHHHHHHHHccCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 45566678899999999999999988766654322 22222 122222222222222222233333333433
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc---cchh----HHHHhhhchHhHHHHHHHHHHccc
Q 003861 338 AEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET---NFRT----QIEADIRPFRGLLLGLFFVTTGSS 410 (791)
Q Consensus 338 ~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~---~~~~----~i~~~l~~~~~~f~~lFFv~vG~~ 410 (791)
.-.+.......+.+++....++++|.+|+|++++.+..|++++.. +.+. .....++.+.-+...+-|+++|+.
T Consensus 261 ~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~ 340 (575)
T KOG1965|consen 261 YLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS 340 (575)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 323444455566677788888999999999999999999999974 2222 222333444556677889999963
Q ss_pred -CChHHHHhh-hHHHHHHHHHHHHHHHHHHHHhhhhc------C----CCHHHHHHHHHHHhhhhhHHHHHHHH
Q 003861 411 -IDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRV------G----LTLQESVRIGLLLSQGGEFAFVVFSL 472 (791)
Q Consensus 411 -l~l~~l~~~-~~~~l~l~l~~ll~K~l~~~~~~~~~------~----~~~r~~~~~g~~l~~rG~~~lvla~~ 472 (791)
++.....-. ...+....++++++|..-++-..... + .+.++-..+.|.=.-||.+++.++.-
T Consensus 341 ~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 341 AFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred HhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 344333222 12334445556677876665444332 2 44555666666544899999888664
No 22
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.5e-15 Score=154.83 Aligned_cols=329 Identities=16% Similarity=0.161 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCC------chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 003861 123 VTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRN------LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 194 (791)
Q Consensus 123 ~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~------~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~ 194 (791)
++...-.+-+++-+...+.--+.|+++||. +++++ +-....++.+-+..-.|..++|+.-....++++.++.
T Consensus 25 F~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~v 104 (467)
T KOG4505|consen 25 FGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFV 104 (467)
T ss_pred HHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333444566565555566889999993 44432 2345678999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC---CCCChh
Q 003861 195 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG---ELPTRF 271 (791)
Q Consensus 195 la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~---~~~~~~ 271 (791)
+-+.-++..++..+.+. +.++ +..+..+++++++.+++|+|.....++.+.+ +.+.+.
T Consensus 105 lllpVmi~gwlvs~~fv------------y~l~-------p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeri 165 (467)
T KOG4505|consen 105 LLLPVMIIGWLVSFGFV------------YALI-------PNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERI 165 (467)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHh-------ccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHH
Confidence 87777777666655442 2222 1278999999999999999999999988654 355677
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-hhc-c--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchH
Q 003861 272 GSATLGILLLQDIAVVPLLVILPVL-ESQ-V--SESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEA 345 (791)
Q Consensus 272 g~l~l~~~~l~Di~~v~~l~i~~~l-~~~-~--~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~--~~e~ 345 (791)
..++.+++..||.++++++-+..-+ ... . ..-.|. ...++.-+.+..+++.+.+|+.+..++...+.+ .+|.
T Consensus 166 R~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv--~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eS 243 (467)
T KOG4505|consen 166 RNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV--CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRES 243 (467)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCcee--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 8888999999999999887654332 111 1 111222 223444455555555566688888777765543 6788
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-cchhHHH-HhhhchH-hHHHHHHHHHHcccCChHHHHh----
Q 003861 346 FVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-NFRTQIE-ADIRPFR-GLLLGLFFVTTGSSIDIELLFR---- 418 (791)
Q Consensus 346 ~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-~~~~~i~-~~l~~~~-~~f~~lFFv~vG~~l~l~~l~~---- 418 (791)
+..+-+.+.+.+..+.+.+|.+..+-.|.||.+++-. -++++.+ .....+. -++.-.||++.|..++++++..
T Consensus 244 fl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g 323 (467)
T KOG4505|consen 244 FLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC
Confidence 8888788888888999999999999999999999964 2333332 2344443 3677899999999999999853
Q ss_pred --hhHHHHHHHHHHHHHHH-HHHHHhhhhc--CCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003861 419 --EWPNVLALLAGLIIIKT-LIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVVFSLAN 474 (791)
Q Consensus 419 --~~~~~l~l~l~~ll~K~-l~~~~~~~~~--~~~~r~~~~~g~~l~~rG~~~lvla~~a~ 474 (791)
.|-.++ +.+..++.|. .++++.-+.. =.+|||++++|+. +|.|.-++..+..+-
T Consensus 324 l~vwrlvi-lsi~iif~RRip~v~l~kp~iPdikswkEALFvGhF-GPIGVgAly~allar 382 (467)
T KOG4505|consen 324 LPVWRLVI-LSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGHF-GPIGVGALYYALLAR 382 (467)
T ss_pred chHHHHHH-HHHHHHHhcccceEEEeccCCcchhhHHHHHHhccC-CCccHHHHHHHHHHH
Confidence 133333 3334444544 4444433332 2589999999995 999998888887764
No 23
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.62 E-value=1.6e-12 Score=143.91 Aligned_cols=267 Identities=23% Similarity=0.294 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCC-------hHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELS-------LARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRS 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleld-------l~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~ 231 (791)
...+.+.+--..++.|.+|+|++ ++..|+..-+ ..-++.+++++.+... .++..
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~-----------------~~n~~- 121 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYV-----------------AVNLA- 121 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHH-----------------HHhCC-
Confidence 45567778888899999999994 4444433332 4567777777765433 33310
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
-..+.-=-++-+.||.+..+.++...|. .++..+..+++.+++||+.++++++++. + ++.+..+ +
T Consensus 122 -------~~~~~~GW~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t-~~i~~~~-L-- 187 (423)
T PRK14853 122 -------GGGALRGWAIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---T-SELNLEA-L-- 187 (423)
T ss_pred -------chhhhhhhhhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---C-CCCCHHH-H--
Confidence 0111111134466999999999999775 4778889999999999999999888754 1 1222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc--------
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-------- 382 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-------- 382 (791)
...++.++++ +++. +.+.++....+.+ .+...+..+..|+|+.+|+|++|++++..
T Consensus 188 --~~a~~~~~~l-----~~l~-------~~~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~ 251 (423)
T PRK14853 188 --LLALVPLALF-----WLLV-------QKRVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGP 251 (423)
T ss_pred --HHHHHHHHHH-----HHHH-------HcCCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccc
Confidence 1111111111 2221 1122223332222 33556689999999999999999999842
Q ss_pred ----cchhHHHHhhhch-HhHHHHHH-HHHHcccCCh-HHHHhhh--HHHHHHHHHHHHHHHHHHHHhhhhc--------
Q 003861 383 ----NFRTQIEADIRPF-RGLLLGLF-FVTTGSSIDI-ELLFREW--PNVLALLAGLIIIKTLIISAIGPRV-------- 445 (791)
Q Consensus 383 ----~~~~~i~~~l~~~-~~~f~~lF-Fv~vG~~l~l-~~l~~~~--~~~l~l~l~~ll~K~l~~~~~~~~~-------- 445 (791)
+..++++++++++ ..+++|+| |+..|.++|. +.+.+.+ +..+.+++..+++|+++++..++..
T Consensus 252 ~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~l 331 (423)
T PRK14853 252 EAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASL 331 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCC
Confidence 1136788899998 47999999 9999999986 4342222 3556677888999999987766542
Q ss_pred --CCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003861 446 --GLTLQESVRIGLLLSQGGEFAFVVFSLAN 474 (791)
Q Consensus 446 --~~~~r~~~~~g~~l~~rG~~~lvla~~a~ 474 (791)
+.+|++-.-+|+.-+-.=.+++.++..+.
T Consensus 332 P~~~~~~~l~gv~~L~GIGFTmSlFI~~LAf 362 (423)
T PRK14853 332 DDDLTWIDVFGVALLAGIGFTVSLLIGELAF 362 (423)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56888888887743333356777777777
No 24
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.1e-13 Score=137.59 Aligned_cols=141 Identities=34% Similarity=0.490 Sum_probs=134.0
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
...+|+++||+|++|+.+++.|. ..+.+++++|.|++.++.++..++.+++||++++++|+++|+++|+.
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~----------~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~ 88 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALL----------ASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARA 88 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeE
Confidence 47889999999999999999998 78889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC-hhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCCh
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-MMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMS 679 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~-~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~ 679 (791)
+++++.++..|..++..++..+|+.++++++++ ..+.+.+...|+|.++.+....+..+++.++...+...
T Consensus 89 vi~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~ 160 (212)
T COG1226 89 VIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDS 160 (212)
T ss_pred EEEecCCHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCch
Confidence 999999999999999999999999999999999 88889999999999999999999999999998776555
No 25
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.23 E-value=1.7e-08 Score=110.04 Aligned_cols=267 Identities=19% Similarity=0.238 Sum_probs=160.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccc-c
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKA----LAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~-~ 231 (791)
...+.+.+.-..++.|.+|+|++.+-+.. .+| ....-++.+++++.+.. +.++.. +
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy-----------------~~~n~~~~ 113 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY-----------------LAFNANDP 113 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH-----------------hheecCCC
Confidence 45567778888889999999997665532 122 22445566666665543 333321 1
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
+...++... ..||.+....++.=.|. .+......+++.+++||+.++++++++. + ++-+..+ +
T Consensus 114 ~~~~GW~IP---------~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t-~~i~~~~-L-- 177 (373)
T TIGR00773 114 ITREGWAIP---------AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---T-NDLSMAA-L-- 177 (373)
T ss_pred cccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---C-CCCCHHH-H--
Confidence 111222222 34666666655554332 4555677888999999999998887642 1 1112211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc-----ch
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FR 385 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~-----~~ 385 (791)
......++ .-+++ ++ .+.++......+.+ ...+.....|+|+.+|+|++|++++..+ -.
T Consensus 178 --~~a~~~~~-----~l~~~----~~---~~v~~~~~y~~lgv--llW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl 241 (373)
T TIGR00773 178 --LVAAVAIA-----VLAVL----NR---CGVRRLGPYMLVGV--ILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPL 241 (373)
T ss_pred --HHHHHHHH-----HHHHH----HH---cCCchhhHHHHHHH--HHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHH
Confidence 11111111 11122 22 22333332222222 2233337999999999999999999741 13
Q ss_pred hHHHHhhhchH-hHHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHHH
Q 003861 386 TQIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQES 452 (791)
Q Consensus 386 ~~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~ 452 (791)
+++++.+++.. .+++|+| |+..|.++|...+.. ..+..+.+++..+++|+++++..++.. +.+|++-
T Consensus 242 ~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~ 321 (373)
T TIGR00773 242 KRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQI 321 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 56777888874 6788999 999999998654432 234456677888899999998776542 5688888
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHH
Q 003861 453 VRIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 453 ~~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
.-.|+. +..| .+++.++..+..
T Consensus 322 ~gv~~L-~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 322 FAVGVL-CGIGFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcC
Confidence 877774 4443 466667776763
No 26
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.02 E-value=1.9e-07 Score=103.63 Aligned_cols=266 Identities=19% Similarity=0.226 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHh----hh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKAL----AK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~~----~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
...+.+.+.-..++.|.+|+|++-+-+... +| ....-++.+++++.++ |+.++...+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI-----------------Y~~~n~~~~ 129 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI-----------------YFFLNADTP 129 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH-----------------HhheecCCC
Confidence 455677888888999999999976655321 22 2234455566666543 333432222
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++.. -..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++-+..+ +
T Consensus 130 ~~~GWgI---------PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~~~~-L--- 192 (438)
T PRK14856 130 SQHGFGI---------PMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---T-TNLKFAW-L--- 192 (438)
T ss_pred ccCcccc---------ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C-CCCcHHH-H---
Confidence 2222222 234677777666654442 3455667788999999999998887642 1 1112211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccc-------
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNF------- 384 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~------- 384 (791)
+..++.++++ +++ ++. +.++.-.|.. +.+...+.....|+|+.++..+.|+++|-.+.
T Consensus 193 -~~a~~~~~~l-----~~l----n~~-~v~~~~~Y~~----~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~ 257 (438)
T PRK14856 193 -LGALGVVLVL-----AVL----NRL-NVRSLIPYLL----LGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVE 257 (438)
T ss_pred -HHHHHHHHHH-----HHH----HHc-CCccccHHHH----HHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhh
Confidence 1111111111 122 221 1112122222 22234456678999999999999999985311
Q ss_pred --------------------------------------hhHHHHhhhchH-hHHHHHH-HHHHcccCChHHHHhhhHHHH
Q 003861 385 --------------------------------------RTQIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFREWPNVL 424 (791)
Q Consensus 385 --------------------------------------~~~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~~l~~~~~~~l 424 (791)
.+++++.++|.. .+.+|+| |...|..++.+.....-+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~l 337 (438)
T PRK14856 258 LLELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLL 337 (438)
T ss_pred hhhhhhhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHH
Confidence 123445566663 4778888 888999887553322234556
Q ss_pred HHHHHHHHHHHHHHHHhhhhc----------CCCHHHHHHHHHHHhhhh-hHHHHHHHHHH
Q 003861 425 ALLAGLIIIKTLIISAIGPRV----------GLTLQESVRIGLLLSQGG-EFAFVVFSLAN 474 (791)
Q Consensus 425 ~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~~~~g~~l~~rG-~~~lvla~~a~ 474 (791)
.+++.++++|+++++..++.. +.+|++-.-.|+. +..| .+++.++..++
T Consensus 338 GI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~L-aGIGFTmSLFIa~LAF 397 (438)
T PRK14856 338 GVILGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLL-AGIGFTMSMFISNLAF 397 (438)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 677888999999998766542 5688888877774 4443 46666666666
No 27
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1e-09 Score=123.06 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=201.3
Q ss_pred CChHHHHHHHHHhhccc--CC--cCCchhHH--HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003861 136 ASPILGFFFAGIVLNQL--GI--IRNLTDVK--VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTA 209 (791)
Q Consensus 136 lP~ivg~ilaGillGp~--gl--i~~~~~l~--~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~ 209 (791)
+|.-..+|+.|+++|-. +. .. +..++ .+--.-+.-+.|++|.-+.-+.+..+...++..+.++.+..++..++
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~-~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~ 146 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIA-PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGA 146 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccc-cccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence 68888899999999962 21 21 11111 22223455689999999999999999999999999999987766655
Q ss_pred hhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHH
Q 003861 210 FELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPL 289 (791)
Q Consensus 210 ~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~ 289 (791)
..| ++. ...+++.+ .+...-+++|.++|..+|..|+.+.+|.+ .|.-.=-++.|++++||...+++
T Consensus 147 sL~----~i~---~~glf~~~------~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLlNDaVTVVL 212 (670)
T KOG1966|consen 147 SLY----AIS---LSGLFGMS------IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLLNDAVTVVL 212 (670)
T ss_pred HHH----HHH---HhhhcCCC------chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhhcCceEEeh
Confidence 433 111 12334411 35778899999999999999999999998 45555566779999999999888
Q ss_pred HHHHHHHhhccCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 003861 290 LVILPVLESQVSES-----VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 364 (791)
Q Consensus 290 l~i~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~l 364 (791)
.-++..+..-++.+ ...+....+.-.+++++ ++++.+++.....++-.+ .+-....+++++...++..+|.+
T Consensus 213 Y~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~l-vGivfafl~sl~tkft~~--vrviePvfif~~pYlaYL~aEm~ 289 (670)
T KOG1966|consen 213 YNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGAL-VGIVFAFLASLVTKFTKH--VRVLEPVFIFLLPYLAYLTAEMF 289 (670)
T ss_pred HHHHHHHHHhcccceeEeeeecceeEEEEEecCchh-HHHHHHHHHHHHHHhhcc--eeeecchhhhhHHHHHHHHHHHH
Confidence 77665443321111 11111111111122222 222233444333343322 22233466677888888899999
Q ss_pred CChHHHHHHHHhHhcCCc---cchhHHHH----hhhchHhHHHHHHHHHHcccCChHHHHhhh--HHHHHHHHHHHHHHH
Q 003861 365 GFSDTLGAFLAGAILAET---NFRTQIEA----DIRPFRGLLLGLFFVTTGSSIDIELLFREW--PNVLALLAGLIIIKT 435 (791)
Q Consensus 365 Gls~~LgAflaGl~l~~~---~~~~~i~~----~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~--~~~l~l~l~~ll~K~ 435 (791)
|+|+++|..+.|+.+... +..++... .+..+...-.++-|+.+|.+.-=+ ...| ..+.+-++..++.|.
T Consensus 290 hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 290 HLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHH
Confidence 999999999999999864 22333332 333344566778899999864222 2223 333333344457788
Q ss_pred HHHHHhhhhc------CCCHHHHHHHHHHHhhhhhHHHHHHH
Q 003861 436 LIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVVFS 471 (791)
Q Consensus 436 l~~~~~~~~~------~~~~r~~~~~g~~l~~rG~~~lvla~ 471 (791)
++++..+++. +++..+.+.++.+ +-||.+++.+..
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~ 408 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVV 408 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEE
Confidence 8876666542 5677888888876 889987776543
No 28
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.82 E-value=4.1e-06 Score=91.36 Aligned_cols=268 Identities=19% Similarity=0.199 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKA----LAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
...+.+.+.-..++.|.+|+|++-+-+.. .+| -...-++.+++++.+... .++..++
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~-----------------~~n~~~~ 117 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYL-----------------SINHDIK 117 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHH-----------------hhccCCc
Confidence 45567778888889999999997654422 122 224456666666655433 3332111
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++... ..||.+..+.++.=.|. .+....-.+++.+++||+.++++++++. + ++-+ +..+
T Consensus 118 ~~~GW~IP---------~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~-~~~L--- 180 (383)
T PRK14854 118 VINGWAIP---------SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---T-KSLS-LLSL--- 180 (383)
T ss_pred ccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C-CCcc-HHHH---
Confidence 11222222 34666666665554332 4556667777889999999988887642 1 1112 2111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc-----chh
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FRT 386 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~-----~~~ 386 (791)
....+.+.+ -+++ ++..+.++.-.|.. ..+...+.....|+|+.++..+.|++++..+ -.+
T Consensus 181 -~~A~~~~~~-----l~~~----nr~~~v~~~~~Y~~----~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~ 246 (383)
T PRK14854 181 -SLGTLFILA-----MIIC----NRIFKINRSSVYVV----LGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPAN 246 (383)
T ss_pred -HHHHHHHHH-----HHHH----HHhcCCceehHHHH----HHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHH
Confidence 111111111 1111 22111122222222 2223445667899999999999999999631 135
Q ss_pred HHHHhhhch-HhHHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHHHH
Q 003861 387 QIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESV 453 (791)
Q Consensus 387 ~i~~~l~~~-~~~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~~ 453 (791)
++++.++|+ ..+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. +.+|++-.
T Consensus 247 rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~ 326 (383)
T PRK14854 247 FMEDSLHPWIIYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLY 326 (383)
T ss_pred HHHHHhhchHHHhhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 678888888 45778888 888888883222221 124455677888899999988766542 56888888
Q ss_pred HHHHHHhhhh-hHHHHHHHHHHH
Q 003861 454 RIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 454 ~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
-.|+. +..| .+++.++..+.+
T Consensus 327 gv~~L-~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 327 GISLL-CGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHH-HHHHHHHHHHHHHhhCC
Confidence 87774 4443 466677777764
No 29
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.80 E-value=4.3e-06 Score=91.45 Aligned_cols=267 Identities=20% Similarity=0.251 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHh----hh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccc-c
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKAL----AK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~~----~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~-~ 231 (791)
+..+.+.+.-..++.|.+|+|++-+-+... +| -...-++.+++++.+.. +.++.. +
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy-----------------~~~n~~~~ 120 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY-----------------LLFNYADP 120 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH-----------------hheecCCC
Confidence 455667777888899999999987655321 22 22445566666665543 333321 1
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
....++... ..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++.+ +..+
T Consensus 121 ~~~~GWaIP---------~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~-~~~L-- 184 (388)
T PRK09561 121 VTREGWAIP---------AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---T-SDLS-MVSL-- 184 (388)
T ss_pred cccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C-CCcc-HHHH--
Confidence 111222222 34666666666654332 4555577888999999999998887642 1 1112 2111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc-----ch
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FR 385 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~-----~~ 385 (791)
......+++ -+++ ++ .+.+....... ..+...+.....|+|+.++..+.|+.++..+ -.
T Consensus 185 --~~a~~~~~~-----l~~l----n~---~~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl 248 (388)
T PRK09561 185 --GVAAVAIAV-----LAVL----NL---CGVRRTSVYIL--VGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPA 248 (388)
T ss_pred --HHHHHHHHH-----HHHH----HH---cCCccchHHHH--HHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHH
Confidence 111111111 1122 21 12222222221 2223445667899999999999999999631 13
Q ss_pred hHHHHhhhchHh-HHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHHH
Q 003861 386 TQIEADIRPFRG-LLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQES 452 (791)
Q Consensus 386 ~~i~~~l~~~~~-~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~ 452 (791)
+++++.++|... +.+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.+|++-
T Consensus 249 ~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l 328 (388)
T PRK09561 249 ERLEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQI 328 (388)
T ss_pred HHHHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 568888888854 588888 888888883222221 123455677788899999988766542 5688888
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHH
Q 003861 453 VRIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 453 ~~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
.-.|+. +..| .+++.++..+.+
T Consensus 329 ~gv~~L-~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 329 YAVGVL-CGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcC
Confidence 877774 4443 456666666663
No 30
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.76 E-value=8e-06 Score=89.55 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=156.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccc-c
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKA----LAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~-~ 231 (791)
...+.+.+--..++.|.+|+|++-+-+.. .+| ....-++.+++++.+... .++.. +
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~-----------------~~n~g~~ 120 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA-----------------AFNYNNP 120 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh-----------------eeecCCC
Confidence 44566777788889999999997665432 122 224456666666655433 23211 1
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
....++... ..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++-+..+ +
T Consensus 121 ~~~~GWgIP---------mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t-~~i~~~~-L-- 184 (389)
T PRK09560 121 ETLRGWAIP---------AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---T-SDLSLPA-L-- 184 (389)
T ss_pred cccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C-CCCCHHH-H--
Confidence 111122222 34666666666664332 4555577888999999999998887642 1 1122221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc---c---
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN---F--- 384 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~---~--- 384 (791)
....+.++++ +++ ++. +.+....... ..+...+.....|+|+.++..+.|++++..+ .
T Consensus 185 --~~a~~~~~~l-----~~l----n~~---~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~ 248 (389)
T PRK09560 185 --ALAAIAIAVL-----FLL----NRL---GVTKLTPYLI--VGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEES 248 (389)
T ss_pred --HHHHHHHHHH-----HHH----HHc---CCccchHHHH--HHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCC
Confidence 1111111111 122 211 2222222211 2223445667889999999999999999631 1
Q ss_pred -hhHHHHhhhchHhH-HHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHH
Q 003861 385 -RTQIEADIRPFRGL-LLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQ 450 (791)
Q Consensus 385 -~~~i~~~l~~~~~~-f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r 450 (791)
.+++++.++|...+ .+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.+|+
T Consensus 249 pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~ 328 (389)
T PRK09560 249 PLHHLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWK 328 (389)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 25678888888554 48988 888888884322322 124456677888999999998766542 56888
Q ss_pred HHHHHHHHHhhhh-hHHHHHHHHHH
Q 003861 451 ESVRIGLLLSQGG-EFAFVVFSLAN 474 (791)
Q Consensus 451 ~~~~~g~~l~~rG-~~~lvla~~a~ 474 (791)
+-.-.|+. +..| .+++.++..+.
T Consensus 329 ~l~gv~~L-~GIGFTmSLFIa~LAF 352 (389)
T PRK09560 329 QIYGVSVL-CGIGFTMSLFIGSLAF 352 (389)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 88877774 4443 46666777776
No 31
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.63 E-value=1.7e-05 Score=87.93 Aligned_cols=264 Identities=17% Similarity=0.164 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHh----hh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKAL----AK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~~----~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
...+.+.+--..++.|.+|+|++-+-+... +| -...-++.+++++.++ |+.++...+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI-----------------y~~~n~~~~ 124 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL-----------------YTALNAGGP 124 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH-----------------HheeecCCC
Confidence 455667777788899999999986655321 22 2244555666666543 233332111
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++. +=..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++.+..+ +
T Consensus 125 ~~~GWg---------IPmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~~~~-L--- 187 (423)
T PRK14855 125 GASGWG---------VPMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---T-SGLNLLA-L--- 187 (423)
T ss_pred ccCccc---------cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---C-CCCCHHH-H---
Confidence 111122 2244777777776665442 3445667788999999999988887642 1 1122221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-c-c-----
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-N-F----- 384 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-~-~----- 384 (791)
...+..++++ +++ ++. +.+.....+. +.+...+.....|+|+.++..+.|++++.. + .
T Consensus 188 -~~a~~~~~~l-----~~l----n~~---~v~~~~~Y~~--~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~ 252 (423)
T PRK14855 188 -LLAALTWALA-----LLA----GRL---GVTSLKIYAV--LGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLA 252 (423)
T ss_pred -HHHHHHHHHH-----HHH----HHc---CCccccHHHH--HHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHH
Confidence 1111111111 122 221 1222211111 222344566789999999999999999863 1 0
Q ss_pred -------------------------------hhHHHHhhhchHh-HHHHHH-HHHHcccCChHHHHhhhHHHHHHHHHHH
Q 003861 385 -------------------------------RTQIEADIRPFRG-LLLGLF-FVTTGSSIDIELLFREWPNVLALLAGLI 431 (791)
Q Consensus 385 -------------------------------~~~i~~~l~~~~~-~f~~lF-Fv~vG~~l~l~~l~~~~~~~l~l~l~~l 431 (791)
.+++++.++|... +.+|+| |...|..++-+.+ .+..+.+++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~---~pv~lGI~~GLv 329 (423)
T PRK14855 253 SLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL---GTVSLGVFLGLL 329 (423)
T ss_pred HHHHHhhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC---CcHHHHHHHHHH
Confidence 1345566666644 578888 8888888843322 234456777888
Q ss_pred HHHHHHHHHhhhhc----------CCCHHHHHHHHHHHhhhh-hHHHHHHHHHHH
Q 003861 432 IIKTLIISAIGPRV----------GLTLQESVRIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 432 l~K~l~~~~~~~~~----------~~~~r~~~~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
++|+++++..++.. +.+|++-.-.|+. +..| .+++.++..+++
T Consensus 330 vGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~L-aGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 330 LGKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGLL-AGIGFTMSLFISNLAFA 383 (423)
T ss_pred hcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhCC
Confidence 99999988766542 5688888877774 4443 466667777763
No 32
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.52 E-value=2.2e-05 Score=82.68 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHHhh---h---HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc-
Q 003861 160 DVKVLSEWGILFLLFEMGLELSLARLKALA---K---FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD- 232 (791)
Q Consensus 160 ~l~~l~elgl~~lLF~~Gleldl~~Lk~~~---~---~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~- 232 (791)
....+-+--..++.+.+|+|++.+-+.... + -...-+..+++.+.+. +..++...+
T Consensus 62 l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----------------y~~~n~~~p~ 124 (390)
T COG3004 62 LLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----------------YLALNAGDPA 124 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----------------hheeecCChh
Confidence 444555666677788999999876664322 1 1233444445544432 333332211
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC-CCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~-~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++. +-+.|+.+....++.=.| ..++...-.+++-+++||+.++++.+++.. .+-+ +..+
T Consensus 125 ~~~GWa---------IP~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls-~~al--- 187 (390)
T COG3004 125 TLEGWA---------IPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLS-MAAL--- 187 (390)
T ss_pred hhcCcC---------cccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCcc-HHHH---
Confidence 111222 224566666666665443 256667778889999999999888877532 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-----cchh
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRT 386 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-----~~~~ 386 (791)
......+.++. .+++..-++.. .|+. +. ......-...|+|..++..+.|+.++-. ..-|
T Consensus 188 -~~a~~~i~vL~---------~lN~~~v~~l~-~Y~~--~g--viLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~ 252 (390)
T COG3004 188 -GIAALAIAVLA---------VLNRLGVRRLS-PYLL--VG--VILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLE 252 (390)
T ss_pred -HHHHHHHHHHH---------HHHHhCchhhh-HHHH--HH--HHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHH
Confidence 11111111111 12221111111 1221 11 1122244578999999999999999942 3447
Q ss_pred HHHHhhhchH-hHHHHHH-HHHHcccCC---hHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHH
Q 003861 387 QIEADIRPFR-GLLLGLF-FVTTGSSID---IELLFREWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQE 451 (791)
Q Consensus 387 ~i~~~l~~~~-~~f~~lF-Fv~vG~~l~---l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~ 451 (791)
++|+.+.|.. -+.+|+| |...|.++. .+.+.+ +.-+.+++..+++|+++++..++.. +.+|++
T Consensus 253 ~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~q 330 (390)
T COG3004 253 RLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQ 330 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHH
Confidence 7888888874 5677888 888888876 444433 3335566788899999988776542 567888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHc
Q 003861 452 SVRIGLLLSQGGEFAFVVFSLANRL 476 (791)
Q Consensus 452 ~~~~g~~l~~rG~~~lvla~~a~~~ 476 (791)
-.-.+..-+-.=.+++.++..+.+.
T Consensus 331 i~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 331 IYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 7777764333335667777776554
No 33
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.45 E-value=6.4e-07 Score=97.82 Aligned_cols=269 Identities=22% Similarity=0.285 Sum_probs=143.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhhHH--HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccc
Q 003861 158 LTDVKVLSEWGILFLLFEMGLELSLARLKA----LAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRS 231 (791)
Q Consensus 158 ~~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~~~--~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~ 231 (791)
....+.+.+--..++.|.+|+|++.+-+.. .+|.. ..-++.+++++.+ .|..++...
T Consensus 53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----------------Iyl~~n~~~ 115 (378)
T PF06965_consen 53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----------------IYLAFNAGG 115 (378)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----------------HHGGG--SS
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----------------HHheeecCC
Confidence 345667788888899999999997665432 22222 3334444444433 233443211
Q ss_pred cccccCCHHHHHHHH-HHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHH
Q 003861 232 DLVNIRSIDEAVVIG-AALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLV 309 (791)
Q Consensus 232 ~~~~~~~~~~alllg-a~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~ 309 (791)
+ . ..=| .+=..||.+..+.++.=.|. .+......+++.+++||+.++++++++.. + +-+..+ +
T Consensus 116 ~-------~--~~~GW~IP~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~-~i~~~~-L- 180 (378)
T PF06965_consen 116 P-------E--AAHGWAIPMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D-GISLLW-L- 180 (378)
T ss_dssp T-------T--HHHHTSSSS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHH-H-
T ss_pred C-------C--cCceEEecccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C-CCCHHH-H-
Confidence 1 0 1111 12245888888887775442 34556678889999999999988887532 1 112111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccch----
Q 003861 310 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR---- 385 (791)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~---- 385 (791)
......++++ +.++| . +.++...|.. ......+.....|+|+.++..+.|+.++..+..
T Consensus 181 ---~~a~~~~~~l-----~~l~r----~-~v~~~~~Y~~----~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~ 243 (378)
T PF06965_consen 181 ---LLAAAALLLL-----FVLNR----L-GVRSLWPYLL----LGILLWYAVLKSGVHATIAGVLLALFIPARPRAGERE 243 (378)
T ss_dssp ---HHHHHHHHHH-----HHHHH----T-T---THHHHH----HHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS---
T ss_pred ---HHHHHHHHHH-----HHHHH----C-CCceehHHHH----HHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCccc
Confidence 1111111111 22222 1 1112222222 122344566789999999999999999975333
Q ss_pred -----hHHHHhhhchH-hHHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CC
Q 003861 386 -----TQIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GL 447 (791)
Q Consensus 386 -----~~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~ 447 (791)
+++++.++|.. .+.+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.
T Consensus 244 ~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~ 323 (378)
T PF06965_consen 244 AESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGV 323 (378)
T ss_dssp -S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S-
T ss_pred CCCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCC
Confidence 46777888884 4668888 888999887665432 123334466778899999987766542 45
Q ss_pred CHHHHHHHHHHHhhhh-hHHHHHHHHHHHc
Q 003861 448 TLQESVRIGLLLSQGG-EFAFVVFSLANRL 476 (791)
Q Consensus 448 ~~r~~~~~g~~l~~rG-~~~lvla~~a~~~ 476 (791)
+|++-.-.|+. +..| .+++.++..+.+.
T Consensus 324 ~w~~l~gv~~L-aGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 324 SWRHLYGVGLL-AGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp -GGGGTTHHHH-TT--HHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 67766666663 4433 4666667777655
No 34
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.14 E-value=0.0042 Score=69.50 Aligned_cols=281 Identities=19% Similarity=0.179 Sum_probs=145.5
Q ss_pred CCChHHHHHHHHHhhcccCCc--C-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 003861 135 RASPILGFFFAGIVLNQLGII--R-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFE 211 (791)
Q Consensus 135 ~lP~ivg~ilaGillGp~gli--~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~ 211 (791)
.+|+++-.++.|+++..+|++ + +.+..+.+.+..+-+-++..=++.|++++++..++.+..=..+.+.+.+
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~vi------ 97 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVI------ 97 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 479999999999999999988 3 3356667777777777777777889999999888775544443333222
Q ss_pred CCCCCcchhhHHHHhhcccccccccCCHH-HHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHH
Q 003861 212 LPPNGAVGTRILEFLFHSRSDLVNIRSID-EAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLL 290 (791)
Q Consensus 212 ~p~~~~lG~~~~~~l~g~~~~~~~~~~~~-~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l 290 (791)
|+.+.+++++.... ...|. .+.+.|.-..-|.--+.++ +..+. + ....-.....|++..-+.+
T Consensus 98 -------G~~va~~l~~~~l~---~~~wk~ag~l~gsyiGGs~N~~Av~--~al~~---~-~~~~~a~~aaDnv~~~~~~ 161 (378)
T PF05684_consen 98 -------GAVVAFLLFGGFLG---PEGWKIAGMLAGSYIGGSVNFVAVA--EALGV---S-DSLFAAALAADNVVMALWF 161 (378)
T ss_pred -------HHHHHHHHHhhccc---chHHHHHHHHHhcccCchhHHHHHH--HHHCC---C-HHHHHHHHHHHHHHHHHHH
Confidence 22223445542200 01232 2223332222222222221 11222 1 2333344555555554444
Q ss_pred HHHHHHhhc---------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHH--HHHHHHHHHHH
Q 003861 291 VILPVLESQ---------VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARS-SEAFV--ALCLLTVAGTS 358 (791)
Q Consensus 291 ~i~~~l~~~---------~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~-~e~~~--~~~l~~~~~~~ 358 (791)
.++..+... ............ .-+.-..+ .+... .+... ...+.++....
T Consensus 162 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-~~~~~~~~l~~~la~a~~v~~~s~ 223 (378)
T PF05684_consen 162 AFLLALPPFARKFDRWTKADTSSIEALEEE-----------------IEAEEAEW-ARKPISQDLAFLLAVAFAVVALSH 223 (378)
T ss_pred HHHHHHhhhhHHhhhccCCCccccchhhhh-----------------hhhhhhcc-ccCCcHhHHHHHHHHHHHHHHHHH
Confidence 443333220 000000000000 00000000 00000 11111 11111111222
Q ss_pred HHHHHh-----CCh----HHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHH
Q 003861 359 LLTQKL-----GFS----DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 429 (791)
Q Consensus 359 ~la~~l-----Gls----~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~ 429 (791)
++++.+ +.+ ..+-....|+..+-++..+.+ .--+++..+++=+||..+|+..|+..+.+ .+..+.+..+
T Consensus 224 ~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i 301 (378)
T PF05684_consen 224 ALAAWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFI 301 (378)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHH
Confidence 233333 111 233445556666555555443 45566778899999999999999999887 4555555566
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHH
Q 003861 430 LIIIKTLIISAIGPRVGLTLQESVRIGL 457 (791)
Q Consensus 430 ~ll~K~l~~~~~~~~~~~~~r~~~~~g~ 457 (791)
.+.+-.+..+..++++|.+..+....+-
T Consensus 302 ~l~iH~~l~l~~~kl~k~~l~~~~vAS~ 329 (378)
T PF05684_consen 302 ILAIHLLLMLILGKLFKIDLFELLVASN 329 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 6777888888888999999988887765
No 35
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=98.07 E-value=9.2e-06 Score=79.65 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|.|++|...++.|. +.|.+|++|+ |+..+++.+.+. +. .+.+.++++++++++.++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll----------~~ga~V~VIs--p~~~~~l~~l~~--i~---~~~~~~~~~dl~~a~lVi 75 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLK----------DTGAFVTVVS--PEICKEMKELPY--IT---WKQKTFSNDDIKDAHLIY 75 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEc--CccCHHHHhccC--cE---EEecccChhcCCCceEEE
Confidence 357999999999999999998 8999999995 555555554331 11 245778888999999999
Q ss_pred EEeCCHHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l 629 (791)
++|+||+.|..++..+|+.
T Consensus 76 aaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 76 AATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ECCCCHHHHHHHHHHHHHC
Confidence 9999999999999999884
No 36
>PRK04148 hypothetical protein; Provisional
Probab=97.88 E-value=0.00011 Score=69.65 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=73.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.+++++|+| +|..+++.|. +.|++|+++|.||+.++.+++.+.+++.+|..+++.=- -++||.+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~----------~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~---y~~a~liys 83 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLK----------ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI---YKNAKLIYS 83 (134)
T ss_pred CEEEEEEec-CCHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH---HhcCCEEEE
Confidence 579999999 9999999998 88999999999999999999999999999999886432 257888877
Q ss_pred EeCCHHHHHHHHHHHHHhCCC
Q 003861 612 MYTDKKRTIEAVQRLRLAFPA 632 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~ 632 (791)
.-+-.|---.+...+|+.+.+
T Consensus 84 irpp~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 84 IRPPRDLQPFILELAKKINVP 104 (134)
T ss_pred eCCCHHHHHHHHHHHHHcCCC
Confidence 776666666677778888654
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.79 E-value=9.3e-05 Score=75.60 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++++|.|+|++|+.+++.|. +.|.+|++.|.+++.++++.+. +...+ |. ++. ...++|.++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~----------~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~l----~~~~~Dv~v 90 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLL----------EEGAKLIVADINEEAVARAAELFGATVV--AP--EEI----YSVDADVFA 90 (200)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hhh----ccccCCEEE
Confidence 47999999999999999998 8999999999999998887664 43322 22 222 224799877
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHCCCCeE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDA 656 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~----~~~~~~L~~~Gad~V 656 (791)
-+... |+.....++++..+ .|+..+|+ +++.+.|++.|+..+
T Consensus 91 p~A~~---~~I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~~ 136 (200)
T cd01075 91 PCALG---GVINDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILYA 136 (200)
T ss_pred ecccc---cccCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEEe
Confidence 45443 34445556777643 58888898 899999999999753
No 38
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.77 E-value=0.0048 Score=66.20 Aligned_cols=253 Identities=17% Similarity=0.160 Sum_probs=141.7
Q ss_pred HHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHH
Q 003861 168 GILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGA 247 (791)
Q Consensus 168 gl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga 247 (791)
-+...+|-.|-++|++...+..|+...+...-+++.+++...+ ..++|... .+. ...+.+=+
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~-------------~~~~g~~g----~~G-ls~laiia 111 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLV-------------GKFFGAEG----IFG-LSGLAIVA 111 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHH-------------HHHcCccc----ccc-hHHHHHHH
Confidence 3667899999999999887777777666666666655443322 23444210 011 24455556
Q ss_pred HhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 003861 248 ALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGK 327 (791)
Q Consensus 248 ~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (791)
+++.|....=..+..|+|. +++.| +..++++ . ++.+...+ .+ ...
T Consensus 112 a~~~~Ng~ly~al~~~yG~-~~d~g-------------A~~~~sl----~---~GPf~tm~---------aL-----ga~ 156 (312)
T PRK12460 112 AMSNSNGGLYAALMGEFGD-ERDVG-------------AISILSL----N---DGPFFTML---------AL-----GAA 156 (312)
T ss_pred HHhcCcHHHHHHHHHHcCC-Hhhhh-------------HHhhhhh----c---cCcHHHHH---------HH-----HHH
Confidence 6677778888888888883 33333 2222222 0 11111100 00 000
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHH
Q 003861 328 YLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407 (791)
Q Consensus 328 ~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~v 407 (791)
++. .+ . .... .+.+=+++.|++++|... +..+.+++-..+.+|+|-+..
T Consensus 157 gLA-~i--------p--~~~l------------------v~lilpILiGmilGNld~--~~~~~l~~Gi~f~I~f~~f~L 205 (312)
T PRK12460 157 GLA-NI--------P--IMAL------------------VAALLPLVLGMILGNLDP--DMRKFLTKGGPLLIPFFAFAL 205 (312)
T ss_pred HHh-cC--------C--hHHH------------------HHHHHHHHHHHHHhccch--hhHHHHhccceEeHHHHHHHh
Confidence 010 00 0 0000 112335678899998532 344555555567999999999
Q ss_pred cccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH--HHHhhhhhHHHHHHHHHHHcCCcchhhhh
Q 003861 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIG--LLLSQGGEFAFVVFSLANRLGVLPLELNK 485 (791)
Q Consensus 408 G~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g--~~l~~rG~~~lvla~~a~~~g~i~~~~~~ 485 (791)
|+++|++++.+.....+.+.+..++.-....++..+++|.+.+.+..+| .+-+--|. +.+.+.-..-.. ..+....
T Consensus 206 G~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgp-AAVaAadP~~~~-~~~~Ata 283 (312)
T PRK12460 206 GAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATP-LAIAAADPSLAP-VAAAATA 283 (312)
T ss_pred cCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHH-HHHHHhchhHHH-HHHHHHH
Confidence 9999999997764445555555566666677777888898888877777 33222222 222221111111 1222223
Q ss_pred HHHHHHHHHHHhHhHHHHHHH
Q 003861 486 LLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 486 ~iv~~vvlt~iltpll~~l~~ 506 (791)
.+...+++|.++.|++..+..
T Consensus 284 qvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 284 QVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999987643
No 39
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.58 E-value=0.018 Score=61.56 Aligned_cols=257 Identities=18% Similarity=0.183 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHH
Q 003861 167 WGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 246 (791)
Q Consensus 167 lgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllg 246 (791)
--+.+++|-.|-++|++...+..|+-..+-+.-+++.+++...+ ..++|...-....+-=..++.+-
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~-------------~~~fg~~Gi~~g~f~GlS~LAii 115 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLV-------------GKFFGPEGIQSGFFLGLSALAII 115 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHcCccccccccccchHHHHHH
Confidence 34678899999999999999988888888777777766544332 34555211000000113455566
Q ss_pred HHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 003861 247 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGG 326 (791)
Q Consensus 247 a~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (791)
++++.+....=..+..|+|. +++.|- .+...++|. ++++.+ .++..+
T Consensus 116 aa~~~~NggLY~aL~~~yGd-~~D~gA--~~i~sl~~G---Pf~tMl---------------------------~LG~sG 162 (314)
T PF03812_consen 116 AAMTNSNGGLYLALMGQYGD-EEDVGA--FSILSLNDG---PFFTML---------------------------ALGASG 162 (314)
T ss_pred HHHhcCCHHHHHHHHHHhCC-HHHhHH--HHHHHhhhh---HHHHHH---------------------------HHhhcc
Confidence 77788889999999999883 333222 222222221 111110 000001
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHH
Q 003861 327 KYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVT 406 (791)
Q Consensus 327 ~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~ 406 (791)
.--.++ ..++. .+=.++.|++++|-+ +++++.+.+-...++|+|-..
T Consensus 163 ~a~ip~-------------~~lv~------------------~llP~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~ 209 (314)
T PF03812_consen 163 LANIPW-------------MSLVA------------------ALLPIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFA 209 (314)
T ss_pred ccCCCH-------------HHHHH------------------HHHHHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhh
Confidence 000000 00000 122457888899853 467777888888999999999
Q ss_pred HcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHHHHHHhhhhhHHH----HHHHHHHHcCCcch
Q 003861 407 TGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPR-VGLTLQESVRIGLLLSQGGEFAF----VVFSLANRLGVLPL 481 (791)
Q Consensus 407 vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~-~~~~~r~~~~~g~~l~~rG~~~l----vla~~a~~~g~i~~ 481 (791)
+|..+|+..+.+.-...+.+.+..+++-....++.-++ .|-+.. .|+..+....-+. +++..--+.....+
T Consensus 210 lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~----aG~A~sstAGnavatPaaiA~~dP~~~~~~~ 285 (314)
T PF03812_consen 210 LGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGNGV----AGAAISSTAGNAVATPAAIAAADPSFAPYAA 285 (314)
T ss_pred hcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCCCc----eeehHHhhhhhhhhhhHHHHHhChhhHhhHH
Confidence 99999999987642222222222223333333444443 222222 2222222222221 12111111111222
Q ss_pred hhhhHHHHHHHHHHHhHhHHHHHHH
Q 003861 482 ELNKLLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 482 ~~~~~iv~~vvlt~iltpll~~l~~ 506 (791)
..-..+...+++|.+++|++..+..
T Consensus 286 ~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 286 SATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445667889999999987643
No 40
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.58 E-value=0.00013 Score=71.25 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=67.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-++++|+|||..|+.+|+.|+ ..|..|.|.|.||-+.-++..+|+++.. ++++ ++++|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr----------~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~v 83 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALR----------GLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFV 83 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHH----------HTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEE
T ss_pred CCEEEEeCCCcccHHHHHHHh----------hCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEE
Confidence 457999999999999999999 8999999999999998888888998763 3332 56899888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe---cChhhHHHHHHCCC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA---QDMMHLLDLKKAGA 653 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara---~~~~~~~~L~~~Ga 653 (791)
.+|++ .++......+++..+ -+++.+ +++-+.+.|++.+.
T Consensus 84 taTG~--~~vi~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 84 TATGN--KDVITGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp E-SSS--SSSB-HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred ECCCC--ccccCHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 88887 344445566676544 456644 44556666766644
No 41
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.51 E-value=0.00035 Score=71.51 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcC-CCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLG-FPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~-~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|++|...++.|. +.|.+|++|+.+.. ..+.+.+.+ .... +..++++++.++|.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll----------~~ga~V~VIs~~~~~~l~~l~~~~~i~~~------~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLL----------KYGAHIVVISPELTENLVKLVEEGKIRWK------QKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEcCCCCHHHHHHHhCCCEEEE------ecCCChhhcCCceE
Confidence 357999999999999999998 88999999987642 233443332 2221 23455678899999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
||++|+|++.|..+...+++ + ..+-.+++++.
T Consensus 74 ViaaT~d~elN~~i~~~a~~-~---~lvn~~d~~~~ 105 (202)
T PRK06718 74 VIAATNDPRVNEQVKEDLPE-N---ALFNVITDAES 105 (202)
T ss_pred EEEcCCCHHHHHHHHHHHHh-C---CcEEECCCCcc
Confidence 99999999999999988854 2 23444555554
No 42
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.29 E-value=0.00083 Score=69.44 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh----------hhHHHHHhcCCCEE--EccCCCHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP----------SVVKESRKLGFPIL--YGDASRPAV 597 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~----------~~v~~~~~~~~~~v--~GD~t~~~~ 597 (791)
..+++|.|+|++|+.+++.|. +.|. .|.+.|.|. +.++..++.+.... .+|..+++.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~----------~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLA----------EEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEA 92 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccc
Confidence 458999999999999999998 6766 566789998 77776655432222 134444444
Q ss_pred HHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE-Eec---ChhhHHHHHHCCCCeEEcCcHHH
Q 003861 598 LLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQ---DMMHLLDLKKAGATDAILENAET 663 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia-ra~---~~~~~~~L~~~Gad~Vi~p~~~~ 663 (791)
+. .. ++|.++-++.++.. ....++++. +++|+ .+| ++++.+.|++.| .++.|+..+
T Consensus 93 l~--~~-~~DVlipaA~~~~i---~~~~a~~l~--a~~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~ 152 (217)
T cd05211 93 IL--GL-DVDIFAPCALGNVI---DLENAKKLK--AKVVAEGANNPTTDEALRILHERG--IVVAPDIVA 152 (217)
T ss_pred ce--ec-cccEEeeccccCcc---ChhhHhhcC--ccEEEeCCCCCCCHHHHHHHHHCC--cEEEChHHh
Confidence 43 33 89988888877544 444566664 56554 777 789999999999 467788543
No 43
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.26 E-value=0.0017 Score=64.09 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=74.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+|-++|+|++|..+++.|. +.|++|.+.|.++++.+++.+.+.... .+-.|..++ +|.|+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~----------~~g~~v~~~d~~~~~~~~~~~~g~~~~---~s~~e~~~~-----~dvvi~~ 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLA----------KAGYEVTVYDRSPEKAEALAEAGAEVA---DSPAEAAEQ-----ADVVILC 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHH----------HTTTEEEEEESSHHHHHHHHHTTEEEE---SSHHHHHHH-----BSEEEE-
T ss_pred EEEEEchHHHHHHHHHHHH----------hcCCeEEeeccchhhhhhhHHhhhhhh---hhhhhHhhc-----ccceEee
Confidence 6889999999999999998 899999999999999999998873222 244455544 4999999
Q ss_pred eCCHHHHHHHHHH---HHHhCCCCcEEEEecC------hhhHHHHHHCCCCeEEcCc
Q 003861 613 YTDKKRTIEAVQR---LRLAFPAIPIYARAQD------MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 613 ~~~d~~n~~~~~~---ar~l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~ 660 (791)
..+++....+... +..+.++ .+++-..+ .+..+.+++.|+..+=.|-
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 9987665554443 3334443 56665443 3344556777888776654
No 44
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.23 E-value=0.0024 Score=69.20 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=75.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC----HHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~----~~~L~~agi~~a~~ 608 (791)
++.|+|.|.+|..++..|. +.|++|+++|.+++..+.+++.|...-.|+.+. .+..++ ++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~ 69 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA----------QAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDL 69 (304)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCE
Confidence 5899999999999999998 789999999999999888887776441222110 011222 378999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~ 650 (791)
+++++......-.+........++..|+...|...+.+.+++
T Consensus 70 vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 70 VILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred EEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 999998765444444444445566678888887776676665
No 45
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.19 E-value=0.55 Score=51.77 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=67.9
Q ss_pred HcCCChHHHHHHHHHhhccc---CCcCC-chhHH----HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 003861 133 IARASPILGFFFAGIVLNQL---GIIRN-LTDVK----VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 204 (791)
Q Consensus 133 rl~lP~ivg~ilaGillGp~---gli~~-~~~l~----~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~ 204 (791)
+.++++++--++.|+++|+. +..+. ..-++ .+-++|+++ .|.+++++++.+.+.+.+......+..++
T Consensus 28 ~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~ 103 (335)
T TIGR00698 28 DPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTF 103 (335)
T ss_pred cCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45788998889999999982 22111 12233 555666654 58899999999999888777666666555
Q ss_pred HHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhc---cHHHHHHHHHh
Q 003861 205 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLS---SSAFVLQLLAE 263 (791)
Q Consensus 205 ~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~T---S~avv~~lL~e 263 (791)
.....+ | .-+++ .+...++++|+-.+.. +...+.+.++.
T Consensus 104 ~~~~~~--------g----~k~l~--------l~~~~~~Lia~GtsICGaSAi~A~a~~i~A 145 (335)
T TIGR00698 104 FLTVFL--------G----SSRLK--------LDKQMSILLGAGSSICGAAAVAAIEPVIKA 145 (335)
T ss_pred HHHHHH--------H----HHHhC--------CChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence 443322 1 13455 6778888888655443 33444455543
No 46
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.04 E-value=0.24 Score=53.95 Aligned_cols=108 Identities=22% Similarity=0.328 Sum_probs=71.9
Q ss_pred HcCCChHHHHHHHHHhhcc--cCCcCCc-hhH----HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 003861 133 IARASPILGFFFAGIVLNQ--LGIIRNL-TDV----KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 205 (791)
Q Consensus 133 rl~lP~ivg~ilaGillGp--~gli~~~-~~l----~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~ 205 (791)
...+++.+--++.|+++|+ .+.-+.- +-+ +.+-++|+++ .|.+++++++.+.+...+....+.+.+++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3678888889999999997 4432211 122 3566666654 588999999999998887777777776665
Q ss_pred HHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhc---cHHHHHHHHHhc
Q 003861 206 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLS---SSAFVLQLLAEK 264 (791)
Q Consensus 206 ~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~T---S~avv~~lL~e~ 264 (791)
+...+ | ..+++ ++...+.++|+-.+.. +.+.+.+.++.+
T Consensus 99 ~~~~l--------g----~r~~~--------l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~ 140 (305)
T PF03601_consen 99 LTYWL--------G----RRLFG--------LDRKLAILIAAGTSICGASAIAATAPVIKAK 140 (305)
T ss_pred HHHHH--------H----HHHhC--------CCHHHHHHHHhhcccchHHHHHHHcccccCC
Confidence 44332 1 14566 6888999998666554 344444555543
No 47
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.03 E-value=0.0028 Score=65.02 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|+|.|++|..-++.|. +.|.+|+||+.+.. ..+.+.+. ...++.++.... . +++++.|
T Consensus 10 k~vlVvGgG~va~rk~~~Ll----------~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~-d-----l~~~~lV 73 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLL----------KAGAQLRVIAEELESELTLLAEQGGITWLARCFDAD-I-----LEGAFLV 73 (205)
T ss_pred CeEEEECcCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH-H-----hCCcEEE
Confidence 47999999999999999998 89999999988764 34445443 566777877643 2 4679999
Q ss_pred EEEeCCHHHHHHHHHHHHHhC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~ 630 (791)
+++++|++.|..++..+++.+
T Consensus 74 i~at~d~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 74 IAATDDEELNRRVAHAARARG 94 (205)
T ss_pred EECCCCHHHHHHHHHHHHHcC
Confidence 999999899999999999875
No 48
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0077 Score=67.08 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=86.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..++|+|+|++|+.+|..|. ..+ .+|++.|.+++.++++.+. ...+..-|+.|.+.|.++ +++.|
T Consensus 2 ~~ilviGaG~Vg~~va~~la----------~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA----------QNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHH----------hCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH-HhcCC
Confidence 46899999999999999997 455 8999999999999999776 488999999999999876 45559
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh----hHHHHHHCCCCeEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM----HLLDLKKAGATDAI 657 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~----~~~~L~~~Gad~Vi 657 (791)
+||.+.+-. .+..+...+-+.. ++.+-.+.+.+ ..+..+++|...+.
T Consensus 71 ~VIn~~p~~-~~~~i~ka~i~~g--v~yvDts~~~~~~~~~~~~a~~Agit~v~ 121 (389)
T COG1748 71 LVINAAPPF-VDLTILKACIKTG--VDYVDTSYYEEPPWKLDEEAKKAGITAVL 121 (389)
T ss_pred EEEEeCCch-hhHHHHHHHHHhC--CCEEEcccCCchhhhhhHHHHHcCeEEEc
Confidence 998888764 4556666666664 45444444443 46667888887654
No 49
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.91 E-value=0.0099 Score=64.23 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=82.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|. ..|.+|++.|.++++.+++.+.+...+. .+.+.+ -++++|.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~----------~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~-~l~~aDiVi 214 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFS----------ALGARVFVGARSSADLARITEMGLIPFP-----LNKLEE-KVAEIDIVI 214 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHH-HhccCCEEE
Confidence 357999999999999999998 8899999999999887777666654332 222332 246899998
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh--hHHHHHHCCCCeEEcC-------cHHHHHHHHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM--HLLDLKKAGATDAILE-------NAETSLQLGSKLL 672 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~--~~~~L~~~Gad~Vi~p-------~~~~~~~la~~~l 672 (791)
.+++..-.| ......+.++.-+|=-+.++. .-+..++.|+..+..| ...+|..+++.+.
T Consensus 215 nt~P~~ii~---~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~~ 282 (287)
T TIGR02853 215 NTIPALVLT---ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLS 282 (287)
T ss_pred ECCChHHhC---HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHHH
Confidence 888754222 223344455544444444332 2478899999998766 3455666665544
No 50
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.0021 Score=68.56 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=132.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHh-cCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLS-AGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~-agi~~a~~v 609 (791)
+.++|+|-|+.++...+.+.+- -+.+.=+.++..|.+.+.... .+-+...+-|+|+.+.|++ .+-+..+++
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~-------~~~~~f~~vv~~~qe~~~~~~~~e~~~fh~fdaTs~~rl~~~~n~~~~~Af 74 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRH-------YSNHNFYIVVVKNQESLIPKNYPETFAFHCFDATSSFRLLQVLNDEVSDAF 74 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHH-------hcCceEEEEEeechhhcccccCcceEEEEEeCCccHHHHHHHhhhHhhhhh
Confidence 4689999999999998877520 034555778888877765443 2346788899999999987 466677766
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCc--EEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhc-CCChHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIP--IYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGF-GVMSDDVTFLR 686 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~--iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l-~~~~~~~~~l~ 686 (791)
|. ..|.++...+...+|..||+.. |+...+..++-+.+++..++.+=.|+ -++++-.+.+ +.+..-
T Consensus 75 i~-~qd~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~lid~~~-----vL~~~F~~~Lp~I~~tp----- 143 (471)
T COG3400 75 II-IQDFKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLILIDEFE-----VLANKFISRLPNIPSTP----- 143 (471)
T ss_pred ee-hhhHHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceeecchHH-----HHHHHHHHhcCCccccc-----
Confidence 54 4566788899999999988765 77777777888888888888764443 3444433332 222110
Q ss_pred HHHhc-ccccceeeeecCCCc--hhhcccccCCcchhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCCC
Q 003861 687 QLVRN-SMEIQAQEVLSQKDD--QEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTN 763 (791)
Q Consensus 687 ~~~~~-~~~~~~~e~~~~~~~--~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~~ 763 (791)
+.+.. .+|+....++..+-. +.-...++..-|+..+.|+.. ..+|.++-.|||||++|..|....-
T Consensus 144 ~~iGLgkGEImEI~vp~gSifaYrhi~sI~qk~~RIvl~YRN~k-----------lll~~~slvlqp~D~lLVvG~P~~l 212 (471)
T COG3400 144 REIGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYRIVLLYRNDK-----------LLLSTKSLVLQPRDILLVVGNPEIL 212 (471)
T ss_pred hhcccccceEEEEecCCCchhhhhhhhhhhhheeEEEEEEECCE-----------EEEeccceEecCCCEEEEeCChHHH
Confidence 11122 233332233322222 222334455556666666443 3789999999999999999987643
No 51
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.79 E-value=0.0043 Score=69.48 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
...++|+|.|+.|+.+++.+. ..|.+|+++|.++++.+++.+..-..+..+..+++.+.++ +.++|.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~----------~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI 235 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMAN----------GLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLI 235 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEE
Confidence 345999999999999999998 8899999999999998887654333445566677777665 68999888
Q ss_pred EEe---CCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 611 IMY---TDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 611 v~~---~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++ +.+..++.....++.+.|+..++-.+
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 876 33333444455566666664444433
No 52
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.75 E-value=0.13 Score=54.77 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=69.8
Q ss_pred HHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhc-CCCHH
Q 003861 372 AFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRV-GLTLQ 450 (791)
Q Consensus 372 AflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~-~~~~r 450 (791)
.++.|++++|-+ +++++.+.+-...++|+|-..+|..+|++.+.+.-...+.+-+..+++--...++.-++. |.+..
T Consensus 177 PlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~~g~ 254 (314)
T TIGR00793 177 PFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGGDGT 254 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCCCCc
Confidence 457788888853 456677777778999999999999999998865322222222222333333444554444 22222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHcC---CcchhhhhHHHHHHHHHHHhHhHHHHHHH
Q 003861 451 ESVRIGLLLSQGGEFAFVVFSLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 451 ~~~~~g~~l~~rG~~~lvla~~a~~~g---~i~~~~~~~iv~~vvlt~iltpll~~l~~ 506 (791)
.....+- .-|.-...=+..+.... ...+.....+...+++|.++.|++..+..
T Consensus 255 aG~A~ss---tAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~ 310 (314)
T TIGR00793 255 AGIAASS---SAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWS 310 (314)
T ss_pred hhhHHHH---HHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 22222111122222111 11122223344567789999999987643
No 53
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.75 E-value=0.017 Score=62.74 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=86.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|+|++|..+++.|. +.|++|++.|.++++++.+.+.+.... .+.+.+.+ ..+++|.++++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~----------~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLA----------KRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEE
Confidence 4789999999999999998 889999999999999999988664332 33333322 34679999999
Q ss_pred eCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeEEcCcHHHHHHHHHH-HHhhcCCChHHHHH
Q 003861 613 YTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILENAETSLQLGSK-LLKGFGVMSDDVTF 684 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~~~~~~~la~~-~l~~l~~~~~~~~~ 684 (791)
++++ ..-.++..+.. +.++ .+++-..+ .+..+.+++.|+..+=.|-. .+..-++. ..-..+=+++..+.
T Consensus 67 vp~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs-Gg~~~a~~G~~~~~gG~~~~~~~ 143 (298)
T TIGR00872 67 VPHG-IVDAVLEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS-GGVWGRERGYCFMIGGDGEAFAR 143 (298)
T ss_pred cCch-HHHHHHHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC-CCHHHHhcCCeeeeCCCHHHHHH
Confidence 9987 33333333333 3444 55655433 23334566778776544421 11221211 11122334555555
Q ss_pred HHHHHhc
Q 003861 685 LRQLVRN 691 (791)
Q Consensus 685 l~~~~~~ 691 (791)
...+++.
T Consensus 144 ~~~~l~~ 150 (298)
T TIGR00872 144 AEPLFAD 150 (298)
T ss_pred HHHHHHH
Confidence 5555543
No 54
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=96.73 E-value=0.012 Score=57.50 Aligned_cols=130 Identities=9% Similarity=0.000 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHh--CCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHhcc-
Q 003861 616 KKRTIEAVQRLRLA--FPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNS- 692 (791)
Q Consensus 616 d~~n~~~~~~ar~l--~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~~~- 692 (791)
|.+++..++.+... .-..++|+.+.|.++.+.++..|.+.|=.-+..+|+.+..=..+ ++.++..++++.-+
T Consensus 17 Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ-----~GL~~Iy~~iL~~~k 91 (206)
T PF06241_consen 17 DADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQ-----PGLAQIYEDILGFEK 91 (206)
T ss_pred hHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccC-----ccHHHHHHHHhCCCC
Confidence 45566666555433 22468999999999999999999998855554455444443333 77788887777554
Q ss_pred cccceeeeecCCCchhhcccccCCcchhhhhhccCCCCCCCC-----ccccccCCCCCCCCCCCCceeeeeccCCCC
Q 003861 693 MEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKTIPSTSN-----DDKLSREDNTDTAGEDAKGVLYCELNGTNN 764 (791)
Q Consensus 693 ~~~~~~e~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~-----~~~~~~~p~~~~~~~~gd~~l~~~~~~~~~ 764 (791)
.++-+...+ .+. +++..+++++ -.+..| +++...-|++++.+++||++|+...-..+.
T Consensus 92 ~vf~l~~~P---------~L~--Gm~y~dvr~~---Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~ 154 (206)
T PF06241_consen 92 NVFNLKRWP---------QLD--GMKYRDVRRS---FPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGKR 154 (206)
T ss_pred cEEEEecCc---------ccC--CcCHHHHHhc---CCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCcc
Confidence 233332222 122 3455555552 222333 888999999999999999999988776554
No 55
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.72 E-value=0.013 Score=63.70 Aligned_cols=109 Identities=22% Similarity=0.329 Sum_probs=73.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|+|++|+.+++.|. +.|+++++.|.++++.+.+.+.|.... .+.+++.+++ +++|.|+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~s~~~~~~~~--~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLR----------EDGHEVVGYDVNQEAVDVAGKLGITAR---HSLEELVSKL--EAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHCCCeec---CCHHHHHHhC--CCCCEEEEE
Confidence 4788999999999999998 889999999999999998887664321 1223444433 357999999
Q ss_pred eCCHHHHHHHHHHHHH-hCCCCcEEEEec------ChhhHHHHHHCCCCeEE
Q 003861 613 YTDKKRTIEAVQRLRL-AFPAIPIYARAQ------DMMHLLDLKKAGATDAI 657 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~-l~p~~~iiara~------~~~~~~~L~~~Gad~Vi 657 (791)
+++++....+...+.. +.++ .+++... ..+..+.+++.|++.+=
T Consensus 67 vp~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 VPAGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred ecCchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 9987554444433333 2333 4555442 23334456677877643
No 56
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.71 E-value=0.014 Score=72.60 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccC---CC-CCCCCCCcEEEEcCChhhHHHHHh-c-CCCEEEccCCCHHHHHhcCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLAS---GS-DGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~---~~-~~~~~g~~vvvID~d~~~v~~~~~-~-~~~~v~GD~t~~~~L~~agi 603 (791)
..++|+|+|.|++|+..++.|.+.-.. +. ..+..+..|++.|.+++..+++.+ . +...+..|.+|.+.|.++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~-v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY-V 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh-h
Confidence 356899999999999999999720000 00 000112349999999999887765 2 677899999999988765 4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH----HHHHCCCC
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL----DLKKAGAT 654 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~----~L~~~Gad 654 (791)
+++|+||++++. ..+..++..|-+.+ .+++....+.+..+ ..+++|+.
T Consensus 647 ~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~eky~~~e~~~L~e~Ak~AGV~ 698 (1042)
T PLN02819 647 SQVDVVISLLPA-SCHAVVAKACIELK--KHLVTASYVSEEMSALDSKAKEAGIT 698 (1042)
T ss_pred cCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEECcCCHHHHHHHHHHHHHcCCE
Confidence 569999999998 45778888888876 35544434444443 33455543
No 57
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.70 E-value=0.017 Score=62.78 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=75.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.++|+|.+|+.+++.|. +.|+++++.|.++++++.+.+.|..+. .+..+..++ .+++|.++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~~~~e~~~~--~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLL----------RGGHEVVGYDRNPEAVEALAEEGATGA---DSLEELVAK--LPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHCCCeec---CCHHHHHhh--cCCCCEEEEE
Confidence 4789999999999999998 789999999999999999887765431 222334433 3467899999
Q ss_pred eCCHHHHHHHHHHHHH-hCCCCcEEEEec--Ch----hhHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAVQRLRL-AFPAIPIYARAQ--DM----MHLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~-l~p~~~iiara~--~~----~~~~~L~~~Gad~Vi~p 659 (791)
.++++....+...+.. +.++ .+++... ++ +..+.+++.|+..+=.|
T Consensus 67 v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 67 VPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred ecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 9886444443333333 3444 4554432 22 23456677898876444
No 58
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.63 E-value=0.011 Score=66.51 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=79.1
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
|+|+|+|.+|+.+++.|.+ ..+. ++++.|.|+++.+++.+ ..+..+..|.+|++.|+++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~---------~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR---------RGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC---------TTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhc---------CCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 6899999999999999982 3334 89999999999888754 4688999999999999887 888898
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~-----~~~~~~~L~~~Gad~Vi~ 658 (791)
||-+.+.. .+..++..+-+.+ ++.+= .. ..+..+..++.|..-++.
T Consensus 71 Vin~~gp~-~~~~v~~~~i~~g--~~yvD-~~~~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 71 VINCAGPF-FGEPVARACIEAG--VHYVD-TSYVTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EEE-SSGG-GHHHHHHHHHHHT---EEEE-SS-HHHHHHHCHHHHHHTTSEEE-S
T ss_pred EEECCccc-hhHHHHHHHHHhC--CCeec-cchhHHHHHHHHHHHHhhCCEEEeC
Confidence 88888764 7778888888886 34333 22 234455566777765543
No 59
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.58 E-value=0.012 Score=58.51 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=67.6
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
|+|.|. |.+|+.+++.|. +.|++|+++-.++++.+. ..+.+++.||..|++.++++ ++++|+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~----------~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLL----------RRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAA-LKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHH-HTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHH----------HCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhh-hhhcchhhhh
Confidence 578896 999999999998 889999999999998887 77899999999999988874 3489999998
Q ss_pred eCC---HHH-HHHHHHHHHHhCC
Q 003861 613 YTD---KKR-TIEAVQRLRLAFP 631 (791)
Q Consensus 613 ~~~---d~~-n~~~~~~ar~l~p 631 (791)
.+. |.. ...++..+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGV 90 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTS
T ss_pred hhhhccccccccccccccccccc
Confidence 874 322 2234455555543
No 60
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.55 E-value=0.013 Score=64.90 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh---------------------hhH----HHHHh--
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP---------------------SVV----KESRK-- 582 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~---------------------~~v----~~~~~-- 582 (791)
+.+|+|+|+|.+|..+++.|. ..|. .+++||.|. .++ +++++
T Consensus 24 ~~~VlIiG~GglGs~va~~La----------~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALV----------RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 458999999999999999998 7887 799999985 122 22222
Q ss_pred cC--CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 583 LG--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 583 ~~--~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.+ +..+..|.+. +.++++ ++++|.||.++++.+.+..+...+++.+
T Consensus 94 p~v~i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ 141 (338)
T PRK12475 94 SEVEIVPVVTDVTV-EELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYN 141 (338)
T ss_pred CCcEEEEEeccCCH-HHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 22 3455667764 445544 7899999999999998888888888875
No 61
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.016 Score=59.37 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=75.5
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
+-.+|+||+|..++++|. +.|++||+.|.|++.++++.+.+ ..+-.|-.+.+.+.+-.++--+++..
T Consensus 3 iGmiGLGrMG~n~v~rl~----------~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 3 IGMIGLGRMGANLVRRLL----------DGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred ceeeccchhhHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccC
Confidence 456899999999999998 89999999999999999999887 23333446677777777777777776
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChh------hHHHHHHCCCCeEE
Q 003861 614 TDKKRTIEAVQRLRLAFPAIPIYARAQDMM------HLLDLKKAGATDAI 657 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l~p~~~iiara~~~~------~~~~L~~~Gad~Vi 657 (791)
++.. +..+-..+-.+.++ .+|.---|.. ..+.+++.|++.+=
T Consensus 70 g~it-~~vi~~la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD 117 (300)
T COG1023 70 GDIT-DAVIDDLAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117 (300)
T ss_pred CCch-HHHHHHHHhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence 6533 33333444445544 4555444333 33346667777653
No 62
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.50 E-value=0.014 Score=63.83 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=58.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+.+..++.||.+|++.++++ ++.+|+|+-
T Consensus 2 kIlVtGatG~iG~~lv~~Ll----------~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~ 70 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQAL----------DEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIID 70 (317)
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEE
Confidence 4788885 999999999998 7899999999998876666667899999999999998765 456788776
Q ss_pred Ee
Q 003861 612 MY 613 (791)
Q Consensus 612 ~~ 613 (791)
+.
T Consensus 71 ~~ 72 (317)
T CHL00194 71 AS 72 (317)
T ss_pred CC
Confidence 54
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.50 E-value=0.013 Score=53.18 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|.|+.|..=++.|. +.|.+++++..+.+..+ .......-+. + ..+++++.|+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll----------~~gA~v~vis~~~~~~~----~~i~~~~~~~------~-~~l~~~~lV~ 65 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLL----------EAGAKVTVISPEIEFSE----GLIQLIRREF------E-EDLDGADLVF 65 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHC----------CCTBEEEEEESSEHHHH----TSCEEEESS-------G-GGCTTESEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCchhhhh----hHHHHHhhhH------H-HHHhhheEEE
Confidence 457999999999999999998 89999999999862222 2333332222 2 3478899999
Q ss_pred EEeCCHHHHHHHHHHHHHhC
Q 003861 611 IMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~ 630 (791)
++++|.+.|-.+...+|+.+
T Consensus 66 ~at~d~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 66 AATDDPELNEAIYADARARG 85 (103)
T ss_dssp E-SS-HHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999875
No 64
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.48 E-value=0.022 Score=58.99 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|+++..=++.|. +.|.+|+||-. +++..+...+..+.++..+.... .++.++.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll----------~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~------dl~g~~L 88 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFL----------KKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE------FIKDKHL 88 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCcE
Confidence 348999999999999888887 78999999954 44443333334566776655433 2467899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
|+++|+|.+.|-.++..+++.+
T Consensus 89 ViaATdD~~vN~~I~~~a~~~~ 110 (223)
T PRK05562 89 IVIATDDEKLNNKIRKHCDRLY 110 (223)
T ss_pred EEECCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999874
No 65
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.43 E-value=0.15 Score=61.14 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhcccCCcC-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 003861 123 VTVIVVPVFKIARASPILGFFFAGIVLNQLGIIR-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVV 201 (791)
Q Consensus 123 ~a~l~~~l~~rl~lP~ivg~ilaGillGp~gli~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~l 201 (791)
......+++..++++..+|-.++|++++....-+ -.+.++.+..+-+.++....|+.+|++.+.+.+..+..+....++
T Consensus 227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~ 306 (621)
T PRK03562 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLA 306 (621)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888999999999999999998532211 124566777787888888899999999887665443322222221
Q ss_pred HHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhcc-HH-HHHHHHHhcCCCC
Q 003861 202 LSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSS-SA-FVLQLLAEKGELP 268 (791)
Q Consensus 202 lt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS-~a-vv~~lL~e~~~~~ 268 (791)
.=++ |..+...++| .++.+++.+|..++.-+ .+ ++..+-.+.|..+
T Consensus 307 ~K~~-------------~~~~~~~~~g--------~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~ 354 (621)
T PRK03562 307 IKIA-------------MLWLLARPLG--------VPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLE 354 (621)
T ss_pred HHHH-------------HHHHHHHHhC--------CCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCC
Confidence 1111 2222345666 68999999999887643 22 2334444555444
No 66
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.43 E-value=0.16 Score=60.73 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhcccCCcCC-chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 003861 123 VTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRN-LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVV 201 (791)
Q Consensus 123 ~a~l~~~l~~rl~lP~ivg~ilaGillGp~gli~~-~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~l 201 (791)
+.....++++.+|++.++|-.++|++++....-+. ...++.+.++-+.++....|+.+|++.+.+.+..++.+.+..++
T Consensus 224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~ 303 (601)
T PRK03659 224 LVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVA 303 (601)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHH
Confidence 34455567889999999999999999986432111 23577778888888889999999999987766544333222222
Q ss_pred HHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhcc
Q 003861 202 LSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSS 253 (791)
Q Consensus 202 lt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS 253 (791)
.=++ +..+...++| .++..++.+|..++..+
T Consensus 304 ~K~~-------------~~~~~~~~~g--------~~~~~al~~g~~L~~~G 334 (601)
T PRK03659 304 VKGL-------------VLYLLARLYG--------LRSSERMQFAGVLSQGG 334 (601)
T ss_pred HHHH-------------HHHHHHHHhC--------CCHHHHHHHHHHHhccc
Confidence 2122 1222345666 68999999998887654
No 67
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.42 E-value=0.091 Score=57.15 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=77.3
Q ss_pred HhCChHHHHHHHHhHhcCC-c-cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003861 363 KLGFSDTLGAFLAGAILAE-T-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 440 (791)
Q Consensus 363 ~lGls~~LgAflaGl~l~~-~-~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~ 440 (791)
..++++.+=|.+.|++++| . ...+..+.-++.-...++.+=-+..|.+++++++.+..+..+......+..-+...++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999 4 3444444444433457778888999999999999875443344444455555556667
Q ss_pred hh-hhcCCCHHHHHHHHHHHhhhhhHHHHHHH
Q 003861 441 IG-PRVGLTLQESVRIGLLLSQGGEFAFVVFS 471 (791)
Q Consensus 441 ~~-~~~~~~~r~~~~~g~~l~~rG~~~lvla~ 471 (791)
.+ +++|++++.+..++.+.+-=|.-+++...
T Consensus 103 lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 77 88999999999999886555654444433
No 68
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.40 E-value=0.15 Score=54.60 Aligned_cols=141 Identities=18% Similarity=0.321 Sum_probs=90.9
Q ss_pred HHHHHHHHhCChHHHHHHHHhHhcCCccch-hHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHH
Q 003861 356 GTSLLTQKLGFSDTLGAFLAGAILAETNFR-TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIK 434 (791)
Q Consensus 356 ~~~~la~~lGls~~LgAflaGl~l~~~~~~-~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K 434 (791)
....+++.++++..++-.++|++++..-.. -+-.+.++.+..+-..++....|+++|++.+.+++.....+....++.-
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~ 85 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVP 85 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999975211 0111235556667777888899999999999876655554444444443
Q ss_pred -HHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhH
Q 003861 435 -TLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALT 498 (791)
Q Consensus 435 -~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~ilt 498 (791)
....+.....++.++.+++.+|..+++-+ .-++.....+.+..+.+.-..+....+++=+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~ 148 (273)
T TIGR00932 86 GVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDIAV 148 (273)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHHHH
Confidence 33333355567899999999998776553 233334445566666555555444444444333
No 69
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.40 E-value=0.013 Score=51.90 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=56.5
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCC---CcEEEE-cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~vvvI-D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.++|+|++|+.+++.|. +.| .++.++ +.++++.+++.++.-..+.. .++.++.+ ++|.+
T Consensus 2 I~iIG~G~mg~al~~~l~----------~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~advv 65 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLL----------ASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA-DDNEEAAQ-----EADVV 65 (96)
T ss_dssp EEEESTSHHHHHHHHHHH----------HTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES-EEHHHHHH-----HTSEE
T ss_pred EEEECCCHHHHHHHHHHH----------HCCCCceeEEeeccCcHHHHHHHHHhhcccccc-CChHHhhc-----cCCEE
Confidence 678899999999999998 778 889967 99999999886543322222 24555654 78889
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
+++.......- ++...+...++ +++.
T Consensus 66 ilav~p~~~~~-v~~~i~~~~~~-~~vi 91 (96)
T PF03807_consen 66 ILAVKPQQLPE-VLSEIPHLLKG-KLVI 91 (96)
T ss_dssp EE-S-GGGHHH-HHHHHHHHHTT-SEEE
T ss_pred EEEECHHHHHH-HHHHHhhccCC-CEEE
Confidence 88887643222 22223444444 4443
No 70
>PLN02494 adenosylhomocysteinase
Probab=96.40 E-value=0.0089 Score=67.99 Aligned_cols=100 Identities=17% Similarity=0.299 Sum_probs=69.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|||++|+.+++.++ ..|.+|+++|.|+.+...+...|+.++ + -++.+ +++|.++
T Consensus 254 GKtVvViGyG~IGr~vA~~ak----------a~Ga~VIV~e~dp~r~~eA~~~G~~vv--~--leEal-----~~ADVVI 314 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMK----------AAGARVIVTEIDPICALQALMEGYQVL--T--LEDVV-----SEADIFV 314 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhHHHHhcCCeec--c--HHHHH-----hhCCEEE
Confidence 467999999999999999998 889999999999988777777777654 1 12333 5689887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE--EecChhhHHHHHHC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKA 651 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~ 651 (791)
.++++. ++........+.++..++- +.++.-+...|.++
T Consensus 315 ~tTGt~--~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 315 TTTGNK--DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred ECCCCc--cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 766653 3333455566666544333 33345666666654
No 71
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.38 E-value=0.92 Score=50.23 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=77.2
Q ss_pred HHHHHHHhC-----ChHHHHHHHHhHhcCCc----cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHH-H
Q 003861 357 TSLLTQKLG-----FSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLA-L 426 (791)
Q Consensus 357 ~~~la~~lG-----ls~~LgAflaGl~l~~~----~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~-l 426 (791)
..++.+.++ ++...++++.|+++.|. ...+...+..+.+.+.-..+|-.+.=|++.+-.+.+.+..++. +
T Consensus 234 G~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL 313 (404)
T COG0786 234 GKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVIL 313 (404)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344666655 67789999999999985 2222344556666788888888888888988888765444333 3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhh-hhHHHHHHHHH
Q 003861 427 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQG-GEFAFVVFSLA 473 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~r-G~~~lvla~~a 473 (791)
.+-.++.-....+...+.+|.++..+...+..++.. |...-.++++.
T Consensus 314 ~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM~ 361 (404)
T COG0786 314 AVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANMQ 361 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhhh
Confidence 333344445555666777899998888766555433 55555665543
No 72
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.36 E-value=0.0088 Score=68.21 Aligned_cols=101 Identities=15% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|+|++|+.+++.++ ..|.+|++.|.||.+...+...|+.+.. ++++ ++.+|.++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~----------a~Ga~ViV~e~dp~~a~~A~~~G~~~~~--------leel-l~~ADIVI 314 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALR----------GFGARVVVTEIDPICALQAAMEGYQVVT--------LEDV-VETADIFV 314 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhHHHHHhcCceecc--------HHHH-HhcCCEEE
Confidence 457999999999999999998 8999999999999887666656665431 2222 46899998
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE--EecChhhHHHHHHCC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKAG 652 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~G 652 (791)
.++++ .++.-....+.+.|+..++- |-+++...+.|+..+
T Consensus 315 ~atGt--~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 315 TATGN--KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred ECCCc--ccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 88764 33333456666666654333 333333445566544
No 73
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.32 E-value=0.0061 Score=58.94 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=74.7
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC----HHHHH--hcCCCCCc
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLL--SAGITSPK 607 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~----~~~L~--~agi~~a~ 607 (791)
+.|+|.|.+|..+|-.|. +.|++|.+++..+ +.+..++.|..+...+..+ +.... ....+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~----------~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA----------QAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHH----------HTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHH----------HCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 579999999999999998 7999999999999 8888888887776655100 00000 34668899
Q ss_pred EEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~ 651 (791)
.+++++......- +...++. ..|+..|+.-.|-..+.+.+++.
T Consensus 70 ~viv~vKa~~~~~-~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 70 LVIVAVKAYQLEQ-ALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp EEEE-SSGGGHHH-HHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred EEEEEecccchHH-HHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 9999987643333 3333444 45555677777778878877765
No 74
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.31 E-value=0.013 Score=66.40 Aligned_cols=100 Identities=14% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|.+|+.+++.++ ..|.+|+++|.|+.+...+...|+.+. + ++++ ++.+|.+|
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr----------~~Ga~ViV~d~dp~ra~~A~~~G~~v~--~------l~ea-l~~aDVVI 272 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLR----------GLGARVIVTEVDPICALQAAMDGFRVM--T------MEEA-AELGDIFV 272 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCchhhHHHHhcCCEec--C------HHHH-HhCCCEEE
Confidence 457999999999999999998 889999999999998777776676543 1 1222 35799888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcE--EEEecChhhHHHHHHC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPI--YARAQDMMHLLDLKKA 651 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~i--iara~~~~~~~~L~~~ 651 (791)
.++++. ++.-....+.+.++..+ +.+.+++-+...|++.
T Consensus 273 ~aTG~~--~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 273 TATGNK--DVITAEHMEAMKDGAILANIGHFDNEIDVAALEEL 313 (425)
T ss_pred ECCCCH--HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhc
Confidence 887763 33323344445444332 2344455555656654
No 75
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.26 E-value=0.013 Score=66.06 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|||..|+.+++.++ ..|.+|+++|.||.+...++..|+.+.. . ++. ++++|.+|
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak----------~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--l--eea-----l~~aDVVI 255 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRAR----------GMGARVIVTEVDPIRALEAAMDGFRVMT--M--EEA-----AKIGDIFI 255 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHh----------hCcCEEEEEeCChhhHHHHHhcCCEeCC--H--HHH-----HhcCCEEE
Confidence 457999999999999999998 8899999999999987777777775431 1 222 46789888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
.++++
T Consensus 256 taTG~ 260 (406)
T TIGR00936 256 TATGN 260 (406)
T ss_pred ECCCC
Confidence 87775
No 76
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.22 E-value=0.015 Score=56.30 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=70.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|+|.+|+.+++.|. +.| .++.++|.++++.+.+.+. +...+..+.++.+.+ ++++|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~----------~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALA----------ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc----cccCCE
Confidence 457999999999999999998 564 7899999999988776543 221111233333222 689999
Q ss_pred EEEEeCCHHH---HHHHHHHHHHhCCCCcEEEEecCh---hhHHHHHHCCCCeEEcCc
Q 003861 609 VMIMYTDKKR---TIEAVQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 609 viv~~~~d~~---n~~~~~~ar~l~p~~~iiara~~~---~~~~~L~~~Gad~Vi~p~ 660 (791)
+|.+++.+.. +.... .....++..++-....+ +-.+..++.|+. ++...
T Consensus 85 vi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~-~v~g~ 139 (155)
T cd01065 85 IINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAK-TIDGL 139 (155)
T ss_pred EEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCc-eeCCH
Confidence 9999988653 22111 12233432233222222 455677888884 44544
No 77
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.22 E-value=0.035 Score=60.27 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=69.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC------HHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR------PAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~------~~~L~~agi~~a 606 (791)
++.|+|.|.+|..++..|. +.|++|++++. +++.+.+++.+..+-..+... ....++ ..+.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~----------~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 69 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL----------EAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEE-LTGPF 69 (305)
T ss_pred eEEEECCCHHHHHHHHHHH----------HCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHH-ccCCC
Confidence 5889999999999999998 78999999999 888888887776554332110 001111 23789
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~ 650 (791)
|.+++++......- +...++. ..++..|+.-.|--.+.+.+++
T Consensus 70 d~vilavk~~~~~~-~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 70 DLVILAVKAYQLDA-AIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred CEEEEEecccCHHH-HHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 99999988754333 2333443 4455456666666555666654
No 78
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.017 Score=62.35 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=52.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcC-----CCEEEccCCCH------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG-----FPILYGDASRP------------ 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~-----~~~v~GD~t~~------------ 595 (791)
++.|+|.|.+|..+|..|. +.|++|+++|.|++.++++.+.- ..+-.|+.++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la----------~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 72 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFA----------VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS 72 (288)
T ss_pred EEEEECccHHHHHHHHHHH----------hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 6899999999999999998 78999999999999988765310 00001112111
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKR 618 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~ 618 (791)
+.+ +..+++||.|+.+.+++..
T Consensus 73 ~~~-~~~~~~aD~Vi~avpe~~~ 94 (288)
T PRK09260 73 LDL-KAAVADADLVIEAVPEKLE 94 (288)
T ss_pred CcH-HHhhcCCCEEEEeccCCHH
Confidence 111 2346889999999988743
No 79
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.15 E-value=0.055 Score=58.76 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
..++.|+|+|+.|+.+++.|+ ..|.+|.++|.++++.+.+++.|...+. .+.+.+ -+.++|.||
T Consensus 152 g~kvlViG~G~iG~~~a~~L~----------~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~~-~l~~aDiVI 215 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLK----------ALGANVTVGARKSAHLARITEMGLSPFH-----LSELAE-EVGKIDIIF 215 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHHH-HhCCCCEEE
Confidence 458999999999999999998 8899999999999988888877765442 122322 356899888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH--HHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL--LDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~--~~L~~~Gad~Vi~p 659 (791)
.+++....+ ....+.+.|+.-+|=-+.++-.. +..++.|+..+-.+
T Consensus 216 ~t~p~~~i~---~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 216 NTIPALVLT---KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAP 263 (296)
T ss_pred ECCChhhhh---HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEEC
Confidence 887653222 22334455654455444443222 34577888877433
No 80
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.10 E-value=0.053 Score=57.74 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=79.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC----cEEEE-cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW----PFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~----~vvvI-D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.++|+|.+|..+++.|. +.|+ ++++. |.++++.+.+.+.|.... .+..+. ++++|
T Consensus 2 kI~~IG~G~mG~a~a~~L~----------~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~---~~~~e~-----~~~aD 63 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLV----------ASGVVPPSRISTADDSNPARRDVFQSLGVKTA---ASNTEV-----VKSSD 63 (266)
T ss_pred eEEEECCcHHHHHHHHHHH----------HCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe---CChHHH-----HhcCC
Confidence 4788999999999999998 6676 78888 999999888887775432 111222 35789
Q ss_pred EEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEe-cChhhHHHHHHCCCCeEE--cCcHHHHHHHHHHHH-hhcCCChHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARA-QDMMHLLDLKKAGATDAI--LENAETSLQLGSKLL-KGFGVMSDDV 682 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara-~~~~~~~~L~~~Gad~Vi--~p~~~~~~~la~~~l-~~l~~~~~~~ 682 (791)
.|++++++ .....+...++.. .++ ++++.. ........-+..|..+++ .|..-....-....+ ..-+.++...
T Consensus 64 vVil~v~~-~~~~~vl~~l~~~~~~~-~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~ 141 (266)
T PLN02688 64 VIILAVKP-QVVKDVLTELRPLLSKD-KLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDR 141 (266)
T ss_pred EEEEEECc-HHHHHHHHHHHhhcCCC-CEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHH
Confidence 99999954 4333433444333 344 444433 443333333445554443 454322111111101 1112344556
Q ss_pred HHHHHHHhccc
Q 003861 683 TFLRQLVRNSM 693 (791)
Q Consensus 683 ~~l~~~~~~~~ 693 (791)
+.+.++++.-+
T Consensus 142 ~~v~~l~~~~G 152 (266)
T PLN02688 142 DLVATLFGAVG 152 (266)
T ss_pred HHHHHHHHhCC
Confidence 66666665544
No 81
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.09 E-value=0.03 Score=61.26 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=61.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--------c--cCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--------G--DASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--------G--D~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++..|. +.|++|.++|.+++.++.+++.+.+..+ + -.++.+ + -
T Consensus 3 kI~iiG~G~mG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 68 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLA----------RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLA---E-A 68 (325)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHH---H-H
Confidence 5899999999999999998 7899999999999999888775432111 0 012222 1 1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 639 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara 639 (791)
++++|.+++++.++.. ..+...+.. ..++..++...
T Consensus 69 ~~~~D~vi~~v~~~~~-~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 69 LADADLILVAVPSQAL-REVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HhCCCEEEEeCCHHHH-HHHHHHHHhhcCCCCEEEEEe
Confidence 4578999999987532 222233333 34554444444
No 82
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.09 E-value=0.0067 Score=68.23 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=58.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE------EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV------AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv------vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.+.|+|+|||..|+.-|..|+ ..|.+|+ +||.+.+..+.+.+.|+.+ + + ++++ ++
T Consensus 36 gKtIaIIGyGSqG~AqAlNLr----------dSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~--~----~~Ea-~~ 96 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMR----------DSGLDISYALRKEAIAEKRASWRKATENGFKV--G--T----YEEL-IP 96 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCc----------cccceeEEeccccccccccchHHHHHhcCCcc--C--C----HHHH-HH
Confidence 467999999999999999998 8899999 8999999888888888854 2 2 3333 78
Q ss_pred CCcEEEEEeCCHHHHHH
Q 003861 605 SPKAVMIMYTDKKRTIE 621 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~ 621 (791)
+||.|+++++|......
T Consensus 97 ~ADvVviLlPDt~q~~v 113 (487)
T PRK05225 97 QADLVINLTPDKQHSDV 113 (487)
T ss_pred hCCEEEEcCChHHHHHH
Confidence 99999999998754333
No 83
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.04 E-value=0.063 Score=58.03 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=71.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-|+|+|.+|+.+++.|. +.|++|++.|.++++.+++.+.|... .++++ + -++++|.++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---~-~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLA----------KAGYQLHVTTIGPEVADELLAAGAVT----AETAR---Q-VTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCcc----cCCHH---H-HHhcCCEEEEe
Confidence 3678999999999999998 88999999999999999888766532 12221 1 13579999999
Q ss_pred eCCHHHHHHHH---H-HHHHhCCCCcEEEEecC--h----hhHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAV---Q-RLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~---~-~ar~l~p~~~iiara~~--~----~~~~~L~~~Gad~Vi~p 659 (791)
.+++.....+. . .+....|+ .+++-..+ + +-.+.+++.|+..+-.|
T Consensus 63 vp~~~~~~~v~~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 63 VPDSPQVEEVAFGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCCHHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 98764322222 1 12233443 45554322 2 23345666788866655
No 84
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.03 E-value=0.041 Score=58.03 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=71.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+++|+|.|..++.+++... ..|++|+++|.+++.....+-.+...+..+. -++.+.. +..-+++
T Consensus 99 p~~~L~IfGaG~va~~la~la~----------~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~t~v 165 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALA----------PLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVAE--APPGSYF 165 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHh----------cCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHhc--CCCCcEE
Confidence 4568999999999999999998 8999999999998854333323333233222 1334443 5567788
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH---HHHHCCC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGA 653 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~---~L~~~Ga 653 (791)
+++|.|.+....+...+-+..|-.+|=+--....+.+ .|++.|.
T Consensus 166 vi~th~h~~D~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 166 LVLTHDHALDLELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGV 212 (246)
T ss_pred EEEeCChHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 8999886655555555543233335555555444444 4445554
No 85
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.01 E-value=0.02 Score=61.61 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=53.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+|.|+|+|.+|..++..|. +.|++|.++|.+++..+++.+.|... -..++.+ .++++|.|+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~----------~~g~~V~~~d~~~~~~~~a~~~g~~~--~~~~~~~-----~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR----------SLGHTVYGVSRRESTCERAIERGLVD--EASTDLS-----LLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCCcc--cccCCHh-----HhcCCCEEEEc
Confidence 4789999999999999998 78999999999999998887765321 1112222 25789999999
Q ss_pred eCCHH
Q 003861 613 YTDKK 617 (791)
Q Consensus 613 ~~~d~ 617 (791)
++.+.
T Consensus 65 vp~~~ 69 (279)
T PRK07417 65 LPIGL 69 (279)
T ss_pred CCHHH
Confidence 98654
No 86
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.01 E-value=0.25 Score=58.63 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchh-HHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHH
Q 003861 351 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 429 (791)
Q Consensus 351 l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~-~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~ 429 (791)
+.++.....++..++++.++|=.++|++++..-... .-.+.++.+.++-..++...+|+++|++.+.+.........+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444555667888999999999999999998752211 0113355566777777778889999999886543322222222
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcch
Q 003861 430 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL 481 (791)
Q Consensus 430 ~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~ 481 (791)
-++.-.+..+.....++.++.+++.+|..++.-+. .++...-.+.+.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 22223333344455678899999998876655322 233444455565544
No 87
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.00 E-value=0.029 Score=58.34 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=67.8
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
|+|.|. |..|+.+++.|. +.+++|.++-.|+. ..+.+++.|..++.+|..|++.|.++ ++.+|.++
T Consensus 1 I~V~GatG~~G~~v~~~L~----------~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL----------SAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHH----------hCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEE
Confidence 467775 999999999998 78999999988864 47788889999999999999999764 56889898
Q ss_pred EEeC---CH--HHHHHHHHHHHHhCC
Q 003861 611 IMYT---DK--KRTIEAVQRLRLAFP 631 (791)
Q Consensus 611 v~~~---~d--~~n~~~~~~ar~l~p 631 (791)
.+++ +. +.-..++..+++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~li~Aa~~agV 95 (233)
T PF05368_consen 70 SVTPPSHPSELEQQKNLIDAAKAAGV 95 (233)
T ss_dssp EESSCSCCCHHHHHHHHHHHHHHHT-
T ss_pred eecCcchhhhhhhhhhHHHhhhcccc
Confidence 8888 33 233345677777763
No 88
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.93 E-value=0.025 Score=63.94 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|.+|+.+++.++ ..|.+|+++|.||.+.+.+++.|+.++.- ++. ++.+|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak----------~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~----~e~-----v~~aDVVI 262 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLR----------GQGARVIVTEVDPICALQAAMEGYEVMTM----EEA-----VKEGDIFV 262 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECChhhHHHHHhcCCEEccH----HHH-----HcCCCEEE
Confidence 457999999999999999998 88999999999999999999888765421 222 25689998
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
.++++.
T Consensus 263 ~atG~~ 268 (413)
T cd00401 263 TTTGNK 268 (413)
T ss_pred ECCCCH
Confidence 888764
No 89
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.92 E-value=0.063 Score=57.99 Aligned_cols=106 Identities=23% Similarity=0.269 Sum_probs=70.1
Q ss_pred EeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC
Q 003861 536 IVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 536 I~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~ 615 (791)
++|.|.+|..+++.|. +.|++|.+.|.++++++.+.+.|... ..+++ + -++++|.|+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---~-~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLL----------KAGHPVRVFDLFPDAVEEAVAAGAQA----AASPA---E-AAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHcCCee----cCCHH---H-HHhcCCEEEEeCCC
Confidence 5799999999999998 88999999999999999998876532 11222 1 14578999999998
Q ss_pred HHHHHHHH---HHHH-HhCCCCcEEEEec--Chhh----HHHHHHCCCCeEEcCc
Q 003861 616 KKRTIEAV---QRLR-LAFPAIPIYARAQ--DMMH----LLDLKKAGATDAILEN 660 (791)
Q Consensus 616 d~~n~~~~---~~ar-~l~p~~~iiara~--~~~~----~~~L~~~Gad~Vi~p~ 660 (791)
+..--.+. ..+. ...++ .+++-.. +++. .+.+++.|++.+=.|-
T Consensus 63 ~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv 116 (288)
T TIGR01692 63 GQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAPV 116 (288)
T ss_pred hHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECCC
Confidence 55333322 1222 33343 3444333 3332 3455667988776553
No 90
>PRK03818 putative transporter; Validated
Probab=95.90 E-value=0.29 Score=57.77 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=48.3
Q ss_pred HHHHHHhHhcCCc--cchhHHHHhhhc-hHhHHHHHHHHHHcccCChHHHHh---h-hHHHHHHHHHHHHHHHHHHHHhh
Q 003861 370 LGAFLAGAILAET--NFRTQIEADIRP-FRGLLLGLFFVTTGSSIDIELLFR---E-WPNVLALLAGLIIIKTLIISAIG 442 (791)
Q Consensus 370 LgAflaGl~l~~~--~~~~~i~~~l~~-~~~~f~~lFFv~vG~~l~l~~l~~---~-~~~~l~l~l~~ll~K~l~~~~~~ 442 (791)
-|++++|++++.- ++...+.+.... ++++...+|...+|++.-++.+.. . |... ++.++.+++-.+.++...
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~-~~~~~~~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLN-LFAVLIVILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5778888888872 112222222233 478999999999999998776643 2 2222 222333333344455556
Q ss_pred hhcCCCHHH
Q 003861 443 PRVGLTLQE 451 (791)
Q Consensus 443 ~~~~~~~r~ 451 (791)
+.+|+++-.
T Consensus 113 ~~~~~~~~~ 121 (552)
T PRK03818 113 KLFGIPLPV 121 (552)
T ss_pred HHhCCCHHH
Confidence 678887663
No 91
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.90 E-value=0.082 Score=53.49 Aligned_cols=128 Identities=21% Similarity=0.289 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCCh-----HHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Q 003861 140 LGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSL-----ARLKALAKFAFGMGLTQVVLSTLAFTAFELPP 214 (791)
Q Consensus 140 vg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl-----~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~ 214 (791)
++.+++|+++|.+...+ .+..+...+..+.+++|.+|+++-- +++|+.+++++.+.+..++.+.+....
T Consensus 2 l~~li~Gi~lG~~~~~~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l----- 75 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLL----- 75 (191)
T ss_pred eeeHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----
Confidence 45678899999865444 3333788999999999999998843 456667788888777766665543332
Q ss_pred CCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHH
Q 003861 215 NGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 293 (791)
Q Consensus 215 ~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~ 293 (791)
..++++ .++.+++.+|+-+.==|- .-.++.|.. +.+.|.+++=.-++-++.++++.-++
T Consensus 76 --------~~~ll~--------~~~~~~lav~sG~GwYSl--sg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 76 --------ASLLLG--------LSLKESLAVASGFGWYSL--SGVLITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred --------HHHHhc--------CCHHHHHHHHccCcHHHh--HHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666 688888888875532111 112244432 34667766665666666555554443
No 92
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.84 E-value=0.082 Score=61.05 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++-|+|.|.+|..+|+.|. +.|++|.+.|.++++++++.+. |..+ .+ .++++-+- ..++++|.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~----------~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v-~~l~~~d~ 69 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIA----------SRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELV-NSLKKPRK 69 (470)
T ss_pred EEEEEeEhHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHH-hcCCCCCE
Confidence 5889999999999999998 8999999999999999888753 4322 12 22332221 13457898
Q ss_pred EEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p 659 (791)
++++..+++..-.+...+.. +.++ .++.-..+ .+..+.+++.|+..+=.|
T Consensus 70 Iil~v~~~~~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 70 VILLIKAGEAVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred EEEEeCChHHHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 88886666544444333333 4444 56665543 234556677788765444
No 93
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.82 E-value=0.062 Score=58.25 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=83.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|.|++|..+++.|. +.|+++.+.|.+++ .+++.+.|.... .+++.+ .+++|.|+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~----------~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLA----------RAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEe
Confidence 4788999999999999998 88999999999885 466665554322 222221 3688999999
Q ss_pred eCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hh----hHHHHHHCCCCeEEcCcHHHHHHHHHH-H-HhhcCCChH
Q 003861 613 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILENAETSLQLGSK-L-LKGFGVMSD 680 (791)
Q Consensus 613 ~~~d~~n~~~~~----~ar~l~p~~~iiara~~--~~----~~~~L~~~Gad~Vi~p~~~~~~~la~~-~-l~~l~~~~~ 680 (791)
..+++....+.. .+....|+ ++++-..+ ++ -.+.+++.|++.+-.|- ..+..-++. - .-..+=++.
T Consensus 63 v~~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPV-sGg~~~a~~g~l~~~~gG~~~ 140 (292)
T PRK15059 63 VPDTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAPV-SGGEIGAREGTLSIMVGGDEA 140 (292)
T ss_pred CCChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHhcCcEEEEEcCCHH
Confidence 998754333321 12223343 56665543 32 33667788999877763 222222221 1 112234555
Q ss_pred HHHHHHHHHhc
Q 003861 681 DVTFLRQLVRN 691 (791)
Q Consensus 681 ~~~~l~~~~~~ 691 (791)
.++.++.+++.
T Consensus 141 ~~~~~~p~l~~ 151 (292)
T PRK15059 141 VFERVKPLFEL 151 (292)
T ss_pred HHHHHHHHHHH
Confidence 56666655554
No 94
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.81 E-value=0.26 Score=54.29 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=70.4
Q ss_pred hCChHHHHHHHHhHhcCCcc---chhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003861 364 LGFSDTLGAFLAGAILAETN---FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 440 (791)
Q Consensus 364 lGls~~LgAflaGl~l~~~~---~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~ 440 (791)
.++++.+=|.+.|++++|.- ..+....-++-....++-+=-+..|++++++++.+..+..+.+.+..+..-+...++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999952 222222222211345566666899999999999765444444444445555555566
Q ss_pred hh-hhcCCCHHHHHHHHHHHhhhhhHHHHH
Q 003861 441 IG-PRVGLTLQESVRIGLLLSQGGEFAFVV 469 (791)
Q Consensus 441 ~~-~~~~~~~r~~~~~g~~l~~rG~~~lvl 469 (791)
.+ +++|++++.+..++.+.+-=|.-+++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 66 689999999999998755555544443
No 95
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.80 E-value=4.6 Score=45.74 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=62.2
Q ss_pred hCChHHHHHHHHhHhcCCc----cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHH-HHH
Q 003861 364 LGFSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT-LII 438 (791)
Q Consensus 364 lGls~~LgAflaGl~l~~~----~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~-l~~ 438 (791)
+.++...+|++.|+++.|. +..+-..+.++.+.+...-+|-++.=|++++..+.+.+..++.+++.-++.-. ...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999984 22222233556667888888888888899999998887776665555544444 344
Q ss_pred HHhhhhcCCCHHHHHH
Q 003861 439 SAIGPRVGLTLQESVR 454 (791)
Q Consensus 439 ~~~~~~~~~~~r~~~~ 454 (791)
++..+.+|.+ -|+..
T Consensus 323 fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHhHHhccch-HHHHH
Confidence 5555667777 44444
No 96
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.79 E-value=0.069 Score=57.98 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=84.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|.|.+|..+++.|. +.|++|.+.|.++++.+++.+.+... .++++ ++ ++++|.++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~----------~~G~~V~v~d~~~~~~~~~~~~g~~~----~~s~~---~~-~~~aDvVi~~ 64 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLL----------KQGHQLQVFDVNPQAVDALVDKGATP----AASPA---QA-AAGAEFVITM 64 (296)
T ss_pred eEEEEeeCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCcc----cCCHH---HH-HhcCCEEEEe
Confidence 5889999999999999998 88999999999999999888766432 12222 11 3678999999
Q ss_pred eCCHHHHHHHHHH----HHHhCCCCcEEEEec--Chh----hHHHHHHCCCCeEEcCcHHHHHHHHHH--HHhhcCCChH
Q 003861 613 YTDKKRTIEAVQR----LRLAFPAIPIYARAQ--DMM----HLLDLKKAGATDAILENAETSLQLGSK--LLKGFGVMSD 680 (791)
Q Consensus 613 ~~~d~~n~~~~~~----ar~l~p~~~iiara~--~~~----~~~~L~~~Gad~Vi~p~~~~~~~la~~--~l~~l~~~~~ 680 (791)
.+++..--.+... .+...++ .+++... ++. -.+.+.+.|+..+=.|-.- +..-++. +.-..|-+++
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g-~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g-~~~~a~~g~l~~~~gg~~~ 142 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRD-ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR-TSDNAITGTLLLLAGGTAE 142 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC-CHHHHHhCcEEEEECCCHH
Confidence 9987532222211 1222233 4554433 333 3355677788876555422 2222221 1122344566
Q ss_pred HHHHHHHHHhc
Q 003861 681 DVTFLRQLVRN 691 (791)
Q Consensus 681 ~~~~l~~~~~~ 691 (791)
..+....+++.
T Consensus 143 ~~~~~~p~l~~ 153 (296)
T PRK15461 143 QVERATPILMA 153 (296)
T ss_pred HHHHHHHHHHH
Confidence 66655555543
No 97
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.78 E-value=0.042 Score=58.90 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=76.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+|-++|+|.+|..+|+.|. +.|+++.+.|.++++ ++.+++.|..... ++ ..-++++|.||.
T Consensus 2 kIafIGLG~MG~pmA~~L~----------~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~----s~----~eaa~~aDvVit 63 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLL----------KAGHEVTVYNRTPEKAAELLAAAGATVAA----SP----AEAAAEADVVIT 63 (286)
T ss_pred eEEEEcCchhhHHHHHHHH----------HCCCEEEEEeCChhhhhHHHHHcCCcccC----CH----HHHHHhCCEEEE
Confidence 5788999999999999998 899999999999999 7777777765532 22 123578999999
Q ss_pred EeCCHHHHHHHHH----HHHHhCCCCcEEEEec--C----hhhHHHHHHCCCCeEEcCc
Q 003861 612 MYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--D----MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 612 ~~~~d~~n~~~~~----~ar~l~p~~~iiara~--~----~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.+|+..-..+.. .+..+.|+ .++.-.. + .+..+.+++.|.+.+=-|-
T Consensus 64 mv~~~~~V~~V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPV 121 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAPV 121 (286)
T ss_pred ecCCHHHHHHHHhCccchhhcCCCC-CEEEECCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence 9998765444332 33333344 3443332 3 4555667888988876663
No 98
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.76 E-value=0.1 Score=60.21 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=74.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC--EEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~--~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++-++|.|.+|..+++.|. +.|++|.+.|.++++++++.+.+.. -+. ...+.+.+. ..++++|.|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~----------~~G~~V~v~drt~~~~~~l~~~~~~g~~~~-~~~s~~e~v-~~l~~~dvIi 68 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMA----------DHGFTVSVYNRTPEKTDEFLAEHAKGKKIV-GAYSIEEFV-QSLERPRKIM 68 (467)
T ss_pred CEEEEeeHHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHhhccCCCCce-ecCCHHHHH-hhcCCCCEEE
Confidence 3678999999999999998 8999999999999999988765111 011 123333332 1356789888
Q ss_pred EEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p 659 (791)
++..+++..-.+...+.. +.++ .++.-..+ .+..+.+++.|+..+=.|
T Consensus 69 l~v~~~~~v~~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvdap 123 (467)
T TIGR00873 69 LMVKAGAPVDAVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGSG 123 (467)
T ss_pred EECCCcHHHHHHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCC
Confidence 888885443333333333 3444 56665544 224456677788766554
No 99
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.71 E-value=0.16 Score=55.11 Aligned_cols=110 Identities=22% Similarity=0.141 Sum_probs=79.7
Q ss_pred HHHHHHhCChHHHHHHHHhHhcCCc-cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHH
Q 003861 358 SLLTQKLGFSDTLGAFLAGAILAET-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTL 436 (791)
Q Consensus 358 ~~la~~lGls~~LgAflaGl~l~~~-~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l 436 (791)
....+..|++...=|.+.|+++++. +.+++..+-++--...+..+=-++.|++++++++.+.-...+.+.+..+..-++
T Consensus 29 ~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 29 FFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred hHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHH
Confidence 3455677788888899999999965 333344444443355677777889999999999987544455555666677777
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHhhhhhHHH
Q 003861 437 IISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467 (791)
Q Consensus 437 ~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~l 467 (791)
..++.+.++|++++.+..+|.+-+-=|.-++
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAi 139 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAI 139 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHH
Confidence 7888888999999999999987554454333
No 100
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.71 E-value=0.098 Score=57.07 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHH-----hcCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLL-----SAGITS 605 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~-----~agi~~ 605 (791)
.+|.|+|.|-+|..++-.|. +.|.+|++++..+++++.+++. |.... .+... .... ..-.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~----------~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~-~~~~~~~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA----------RAGLPVRLILRDRQRLAAYQQAGGLTLV-EQGQA-SLYAIPAETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hCCCCeEEEEechHHHHHHhhcCCeEEe-eCCcc-eeeccCCCCcccccc
Confidence 46999999999999999998 7899999999998888888754 54332 22211 1100 111347
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC-CCCeEEc
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA-GATDAIL 658 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~-Gad~Vi~ 658 (791)
+|.+++++-.... ..+...++. ++++..|+.-.|--.+.+.+++. +.+.|+.
T Consensus 71 ~D~viv~vK~~~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~ 124 (305)
T PRK05708 71 IHRLLLACKAYDA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIF 124 (305)
T ss_pred cCEEEEECCHHhH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEE
Confidence 8999999876532 233334444 56777788888877777777554 6555543
No 101
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.024 Score=65.21 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhH----HHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVV----KESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v----~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++++|+|.|+.|..+|+.|. +.|++|+++|.++ +.. +++.+.+..++.+|..+. ..++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLK----------KLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------Hhhc
Confidence 457999999999999999998 8999999999985 333 445566888999998873 2467
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+|.||.+++....|- ....+|+.+ ++++.+
T Consensus 69 ~d~vv~~~g~~~~~~-~~~~a~~~~--i~~~~~ 98 (450)
T PRK14106 69 VDLVVVSPGVPLDSP-PVVQAHKKG--IEVIGE 98 (450)
T ss_pred CCEEEECCCCCCCCH-HHHHHHHCC--CcEEeH
Confidence 899988887654444 556667754 566543
No 102
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.69 E-value=0.079 Score=56.77 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=62.8
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC-----CCC-C
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG-----ITS-P 606 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag-----i~~-a 606 (791)
++|.|. |.+|+.+++.|. +.|++|.++..+++..+ ..+...+.+|.+|++.|+++= ++. +
T Consensus 2 ilVtGatG~iG~~vv~~L~----------~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQ----------AASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred EEEEcCCChHHHHHHHHHH----------hCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 567777 999999999998 78999999999987543 357778899999999998752 345 8
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHHhCC
Q 003861 607 KAVMIMYTDK----KRTIEAVQRLRLAFP 631 (791)
Q Consensus 607 ~~viv~~~~d----~~n~~~~~~ar~l~p 631 (791)
|.++.+.++. +.-..++..+++.+.
T Consensus 69 d~v~~~~~~~~~~~~~~~~~i~aa~~~gv 97 (285)
T TIGR03649 69 SAVYLVAPPIPDLAPPMIKFIDFARSKGV 97 (285)
T ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcCC
Confidence 8887665531 122234556676653
No 103
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.69 E-value=0.13 Score=55.62 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=71.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|..+++.|. +.|++|.+.|.++++.+.+.+.+... .++.+-+ ++++|.++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~~~g~~~----~~~~~e~----~~~~d~vi~~ 65 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLL----------KAGYSLVVYDRNPEAVAEVIAAGAET----ASTAKAV----AEQCDVIITM 65 (296)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCee----cCCHHHH----HhcCCEEEEe
Confidence 6899999999999999998 78999999999999998887766432 1222222 2579999999
Q ss_pred eCCHHHHHHHH---H-HHHHhCCCCcEEEEec--Chh----hHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAV---Q-RLRLAFPAIPIYARAQ--DMM----HLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~---~-~ar~l~p~~~iiara~--~~~----~~~~L~~~Gad~Vi~p 659 (791)
++++.....+. . .+....++ .+++-.. ++. -.+.+++.|++.+-.|
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 98765332222 1 23333444 4555433 332 2334556688766555
No 104
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.68 E-value=0.064 Score=59.37 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=68.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh--------------h-------hH----HHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP--------------S-------VV----KESRKLG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~--------------~-------~v----~~~~~~~ 584 (791)
+.+|+|+|+|..|..+++.|. ..|. ++++||.|. + ++ +++++.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La----------~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLV----------RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 568999999999999999998 7888 899999983 1 11 2223221
Q ss_pred ----CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 585 ----FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 585 ----~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
...+..|.+..+.. +. ++++|.||.++++.+....+...+++.+. ..|.+.
T Consensus 94 p~v~v~~~~~~~~~~~~~-~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~i-P~i~~~ 148 (339)
T PRK07688 94 SDVRVEAIVQDVTAEELE-EL-VTGVDLIIDATDNFETRFIVNDAAQKYGI-PWIYGA 148 (339)
T ss_pred CCcEEEEEeccCCHHHHH-HH-HcCCCEEEEcCCCHHHHHHHHHHHHHhCC-CEEEEe
Confidence 33455666654433 33 68899999999999999988888888762 235443
No 105
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.68 E-value=4.2 Score=44.43 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHcCCChHHHHHHHHHhhcccCCcC--CchhH----HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 003861 131 FKIARASPILGFFFAGIVLNQLGIIR--NLTDV----KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 204 (791)
Q Consensus 131 ~~rl~lP~ivg~ilaGillGp~gli~--~~~~l----~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~ 204 (791)
....++|..+--|+.||++|.+...+ ...-+ +.+-++|+++ -|.+++++++.+.+...+.+....+..++
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t~ 107 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSSTF 107 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHHH
Confidence 34577999999999999999643221 11222 3556667665 58899999999999888877777666666
Q ss_pred HHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHH
Q 003861 205 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVL 258 (791)
Q Consensus 205 ~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~ 258 (791)
+....+ .-++| +++..++++|+--|....+.+.
T Consensus 108 ~~~~~l-------------g~~lg--------ld~~~a~Lia~GssICGasAia 140 (334)
T COG2855 108 LFAYFL-------------GKLLG--------LDKKLALLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHHH-------------HHHhC--------CCHHHHHHHHccchhhHHHHHH
Confidence 554432 23666 7999999999766665444443
No 106
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.66 Score=52.60 Aligned_cols=113 Identities=22% Similarity=0.195 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc--cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHH-HHHH
Q 003861 350 CLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPN-VLAL 426 (791)
Q Consensus 350 ~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~--~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~-~l~l 426 (791)
.++++....++.+.+|+++++|=.++|+++++. ..-.+..+.++-+.++=..++...+|++.|++.+.+.... ....
T Consensus 14 iL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~ 93 (397)
T COG0475 14 LLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGV 93 (397)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhH
Confidence 344455566899999999999999999999983 1122223344445555566677889999999999875444 2222
Q ss_pred HHHHHHHHHHHHHHhhh-hcCCCHHHHHHHHHHHhhh
Q 003861 427 LAGLIIIKTLIISAIGP-RVGLTLQESVRIGLLLSQG 462 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~-~~~~~~r~~~~~g~~l~~r 462 (791)
....+..-+........ .+++++..++++|..++.-
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~s 130 (397)
T COG0475 94 AQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALS 130 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 22222222122211111 4789999999999876444
No 107
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.53 E-value=0.074 Score=58.80 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC----------HHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----------PAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~----------~~~L~~a 601 (791)
.+|.|+|.|.+|..++..|. +.|++|.++|.++. .+.+++.+..+...+..+ ....+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~----------~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA----------AAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-- 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChh--
Confidence 36999999999999999998 78999999998764 466666665443211100 01112
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHHHC
Q 003861 602 GITSPKAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 602 gi~~a~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~~~ 651 (791)
.++++|.+++++..+.. ..++..++.. .++..++.-.+...+.+.+++.
T Consensus 70 ~~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~ 119 (341)
T PRK08229 70 ALATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAA 119 (341)
T ss_pred hccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHh
Confidence 25689999999887532 3344444443 4444444455555555555543
No 108
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.52 E-value=0.025 Score=55.23 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+.|+|||..|+.-+..|+ +.|.+|++-....+ ..+++++.|+.+.. ..+| +++||.|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLr----------DSG~~V~Vglr~~s~s~~~A~~~Gf~v~~--------~~eA-v~~aDvV 64 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLR----------DSGVNVIVGLREGSASWEKAKADGFEVMS--------VAEA-VKKADVV 64 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHH----------HCC-EEEEEE-TTCHHHHHHHHTT-ECCE--------HHHH-HHC-SEE
T ss_pred CCEEEEECCChHHHHHHHHHH----------hCCCCEEEEecCCCcCHHHHHHCCCeecc--------HHHH-HhhCCEE
Confidence 457999999999999999999 88999998887766 78889999987752 3333 5789999
Q ss_pred EEEeCCHHH-HHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCCCCeEEc
Q 003861 610 MIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~-n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~Gad~Vi~ 658 (791)
+++++|... -+.--.....+.|+ .+++-+. +-.+...--..++|.++.
T Consensus 65 ~~L~PD~~q~~vy~~~I~p~l~~G-~~L~fahGfni~~~~i~pp~~vdV~mv 115 (165)
T PF07991_consen 65 MLLLPDEVQPEVYEEEIAPNLKPG-ATLVFAHGFNIHYGLIKPPKDVDVIMV 115 (165)
T ss_dssp EE-S-HHHHHHHHHHHHHHHS-TT--EEEESSSHHHHCTTS---TTSEEEEE
T ss_pred EEeCChHHHHHHHHHHHHhhCCCC-CEEEeCCcchhhcCcccCCCCCeEEEE
Confidence 999987532 22223334444444 3444332 222333334456666544
No 109
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.50 E-value=0.13 Score=59.67 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++-++|+|.+|+.+|+.|. +.|++|+|.|.++++++.+.+. |...+.+ +.+++-+- .+++++|
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~----------~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~-a~s~~e~v-~~l~~~d 74 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIA----------EKGFPISVYNRTTSKVDETVERAKKEGNLPLYG-FKDPEDFV-LSIQKPR 74 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHH----------hCCCeEEEECCCHHHHHHHHHhhhhcCCccccc-CCCHHHHH-hcCCCCC
Confidence 36999999999999999998 8999999999999999887653 3221111 12222221 2567899
Q ss_pred EEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEecCh------hhHHHHHHCCCCeEEcC
Q 003861 608 AVMIMYTDKKRTIEAVQ-RLRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 659 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~-~ar~l~p~~~iiara~~~------~~~~~L~~~Gad~Vi~p 659 (791)
.|+.+..+++.--.+.. .+..+.|+ .|++-..+. +..+.+++.|+..+=.|
T Consensus 75 vIi~~v~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 75 SVIILVKAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred EEEEECCCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 99999988764333322 23334444 566654432 33455677787765444
No 110
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.49 E-value=0.077 Score=55.87 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=55.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCC-HHHHHhcCCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASR-PAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~-~~~L~~agi~~a 606 (791)
.+.++|+|. |.+|+.+++.|. +.|++|+++..++++.+.... .+..++.||.+| ++.+.++-..++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~ 86 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLL----------AKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDS 86 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHH----------hCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCC
Confidence 457899995 999999999998 789999999888877554332 357889999998 455544311478
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.++.+++
T Consensus 87 d~vi~~~g 94 (251)
T PLN00141 87 DAVICATG 94 (251)
T ss_pred CEEEECCC
Confidence 98887764
No 111
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.43 E-value=0.026 Score=61.13 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-+.++|||||..|+-+|..++ ..|.+|+|.|.||-+.-++.-+|+.|+.- ++| .+.+|.+|
T Consensus 209 GK~vVV~GYG~vGrG~A~~~r----------g~GA~ViVtEvDPI~AleA~MdGf~V~~m--------~~A-a~~gDifi 269 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLR----------GMGARVIVTEVDPIRALEAAMDGFRVMTM--------EEA-AKTGDIFV 269 (420)
T ss_pred CceEEEecccccchHHHHHhh----------cCCCeEEEEecCchHHHHHhhcCcEEEEh--------HHh-hhcCCEEE
Confidence 457999999999999999998 89999999999999988888889998872 221 24557666
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
.+|++
T Consensus 270 T~TGn 274 (420)
T COG0499 270 TATGN 274 (420)
T ss_pred EccCC
Confidence 66665
No 112
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.037 Score=59.14 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=60.0
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CC----
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI---- 603 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi---- 603 (791)
.+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++.+.+...+.+|.+|++.++++ .+
T Consensus 4 ~k~vlItGasggiG~~la~~l~----------~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----------SDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 347888988 999999999998 8899999999999998888888889999999999866543 11
Q ss_pred -CCCcEEEEEe
Q 003861 604 -TSPKAVMIMY 613 (791)
Q Consensus 604 -~~a~~viv~~ 613 (791)
.+.|.+|-..
T Consensus 74 ~g~id~li~~A 84 (277)
T PRK05993 74 GGRLDALFNNG 84 (277)
T ss_pred CCCccEEEECC
Confidence 3567776653
No 113
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.42 E-value=5.1 Score=43.67 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCH
Q 003861 160 DVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSI 239 (791)
Q Consensus 160 ~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~ 239 (791)
.++....+.+.+++|..|+.++.+++++..++.. .-+++...+++.+-.+ |.. +.+++ +.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~-~vligl~~qfvlmPll--------a~~-~~~~~----------~l 94 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPR-LVLIGLAAQFVLMPLL--------ALL-LAKLF----------PL 94 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchH-HHHHHHHHHHHHHHHH--------HHH-HHHHc----------CC
Confidence 3444568999999999999999999998655432 2233344444443332 211 12333 34
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHH
Q 003861 240 DEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 293 (791)
Q Consensus 240 ~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~ 293 (791)
...+..|.++..+.|.-+....--.- .+.+ --..+..+.++.+.++++.-++
T Consensus 95 ~~~l~~Gl~ll~~~Pggv~S~~~t~l-AkGn-ValsV~~tsvStll~~f~tPll 146 (319)
T COG0385 95 PPELAVGLLLLGCCPGGVASNAMTYL-AKGN-VALSVCSTSVSTLLGPFLTPLL 146 (319)
T ss_pred CHHHHHhHHheeeCCCchhHHHHHHH-hcCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777665544444433222111 1111 1234455666677666555443
No 114
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.38 E-value=0.1 Score=59.51 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh---cC------
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---AG------ 602 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~---ag------ 602 (791)
.++.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.....+.. ++.-++.+++ .|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La----------~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA----------SRQKQVIGVDINQHAVDTINRGEIHIV--EPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred cEEEEECcchhhHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHCCCCCcC--CCCHHHHHHHHhhcCceeeec
Confidence 46999999999999999998 889999999999999998765443332 2222333321 12
Q ss_pred -CCCCcEEEEEeCCH
Q 003861 603 -ITSPKAVMIMYTDK 616 (791)
Q Consensus 603 -i~~a~~viv~~~~d 616 (791)
.+++|.++++.+++
T Consensus 72 ~~~~aDvvii~vptp 86 (415)
T PRK11064 72 TPEPADAFLIAVPTP 86 (415)
T ss_pred ccccCCEEEEEcCCC
Confidence 45899999999874
No 115
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.38 E-value=0.12 Score=55.43 Aligned_cols=109 Identities=15% Similarity=0.021 Sum_probs=65.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++-|+|+|++|+.+++.|.+ ...+.+++ +.|.++++.+.+.+. +....+ ++.+-|. +++|+|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~--------~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~---~~~eell----~~~D~V 71 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDR--------GLPGLTLSAVAVRDPQRHADFIWGLRRPPPV---VPLDQLA----THADIV 71 (271)
T ss_pred eEEEEECccHHHHHHHHHHHh--------cCCCeEEEEEECCCHHHHHHHHHhcCCCccc---CCHHHHh----cCCCEE
Confidence 479999999999999999971 01467766 679999987766543 322122 3444442 468999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC-----hhhHHHHHHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-----MMHLLDLKKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~-----~~~~~~L~~~Gad~Vi~ 658 (791)
+++++++.. ...+..+-+.+ .++++.... ++-.+..++.|+...+.
T Consensus 72 vi~tp~~~h-~e~~~~aL~aG--k~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 72 VEAAPASVL-RAIVEPVLAAG--KKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred EECCCcHHH-HHHHHHHHHcC--CcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 999998754 33333333443 355553221 22233345667754444
No 116
>PRK08017 oxidoreductase; Provisional
Probab=95.38 E-value=0.037 Score=58.01 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=52.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ 600 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.++++.+.+++.+...+.+|.+|++.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELK----------RRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 46899998 999999999998 789999999999999888887788899999999877654
No 117
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.054 Score=59.13 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=63.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----------hcCCCE------EEccCCCH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----------KLGFPI------LYGDASRP 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----------~~~~~~------v~GD~t~~ 595 (791)
+|.|+|.|.+|..++..|. +.|++|+++|.+++..+.++ +.|..- ..++.+-.
T Consensus 4 ~V~VIG~G~mG~~iA~~la----------~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~ 73 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFA----------RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT 73 (308)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE
Confidence 6899999999999999998 78999999999998877643 222100 00000000
Q ss_pred HHHHhcCCCCCcEEEEEeCCHH-HHHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~-~n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
..+.+ -++++|.++.+++++. ....+...+++..++-.+++...+......+
T Consensus 74 ~~~~~-a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~l 126 (308)
T PRK06129 74 DSLAD-AVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAF 126 (308)
T ss_pred CcHHH-hhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHH
Confidence 11222 2468999999998873 3344444455555443455544443333333
No 118
>PLN02256 arogenate dehydrogenase
Probab=95.32 E-value=0.099 Score=56.99 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=59.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
...++.|+|+|.+|+.+++.|. +.|.+|+++|.++.. +.+.+.|... .++.+.+. ..++|.|
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~----------~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDvV 96 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFV----------KQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDVV 96 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCEE
Confidence 4457999999999999999998 778999999998743 4455556532 23333221 1468999
Q ss_pred EEEeCCHHHHHHHHHHH--HHhCCCCcEEEEecC
Q 003861 610 MIMYTDKKRTIEAVQRL--RLAFPAIPIYARAQD 641 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~a--r~l~p~~~iiara~~ 641 (791)
+++++.+. ...+.... ..+.|+ .++.-+-+
T Consensus 97 ilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 97 LLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred EEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence 99998653 33333332 223444 35554444
No 119
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.31 E-value=0.046 Score=59.39 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=51.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.|+ +.|.+|++.|......+.+.+.|+.+. +-++. +++||.|+
T Consensus 16 gKtVGIIG~GsIG~amA~nL~----------d~G~~ViV~~r~~~s~~~A~~~G~~v~----sl~Ea-----ak~ADVV~ 76 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLR----------DSGVEVVVGVRPGKSFEVAKADGFEVM----SVSEA-----VRTAQVVQ 76 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHH----------HCcCEEEEEECcchhhHHHHHcCCEEC----CHHHH-----HhcCCEEE
Confidence 457999999999999999998 899999999865555555666666432 22222 36789999
Q ss_pred EEeCCHHH
Q 003861 611 IMYTDKKR 618 (791)
Q Consensus 611 v~~~~d~~ 618 (791)
+..++++.
T Consensus 77 llLPd~~t 84 (335)
T PRK13403 77 MLLPDEQQ 84 (335)
T ss_pred EeCCChHH
Confidence 99998543
No 120
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.29 E-value=0.089 Score=56.84 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----------CCCEEEcc--------CC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----------GFPILYGD--------AS 593 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----------~~~~v~GD--------~t 593 (791)
++|.|+|.|.+|..+|..+. ..|++|+++|.|++.++++.+. +......+ .+
T Consensus 4 ~kIaViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA----------FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT 73 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE
Confidence 36999999999999999998 7899999999999987666432 01110000 00
Q ss_pred CHHHHHhcCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecC
Q 003861 594 RPAVLLSAGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~ 641 (791)
-.+.+++ .++++|.||.+++++.+ -..+...+.+..++-.+++...+
T Consensus 74 ~~~d~~~-a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 74 LTTDLAE-AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred EeCCHHH-HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence 0011222 25789999999998632 22223334343333245554333
No 121
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.24 E-value=0.12 Score=60.53 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---------------cCCCEEEccCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------------LGFPILYGDAS 593 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---------------~~~~~v~GD~t 593 (791)
..+.++|.|. |.+|+.+++.|. +.|++|++++.++++.+.+.+ ....++.||.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LL----------k~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELL----------KLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3456888886 899999999998 789999999999988765432 12568999999
Q ss_pred CHHHHHhcCCCCCcEEEEEeCC
Q 003861 594 RPAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~ 615 (791)
|++.++++ ++++|+||.+.+.
T Consensus 149 D~esI~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 149 KPDQIGPA-LGNASVVICCIGA 169 (576)
T ss_pred CHHHHHHH-hcCCCEEEEcccc
Confidence 99988763 5678988877653
No 122
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.24 E-value=0.11 Score=56.64 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=83.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccC----CCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDA----SRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~----t~~~~L~~agi~~a~~ 608 (791)
++.|+|.|-+|...+-.|. +.|.+|+++-.++. ++++++.|..+...+. .....-.......+|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~----------~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 2 KILILGAGAIGSLLGARLA----------KAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADL 70 (307)
T ss_pred eEEEECCcHHHHHHHHHHH----------hCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCE
Confidence 5889999999999999998 78855555555554 8899988887776665 1122222334558999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCe
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATD 655 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~ 655 (791)
+|+++..-..+-.+....+...|+..|+.-.|--.+.+.+++.....
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 99998876555555566666777777888999999999998887776
No 123
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.20 E-value=0.049 Score=59.44 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=81.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHhc--------CCC-EEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL--------GFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~~--------~~~-~v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|+.++..|. ..| .+++++|.|+++.+..... +.. .+.+ .+.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~----------~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~~----- 64 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLV----------NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDYS----- 64 (306)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCHH-----
Confidence 6899999999999999997 667 5899999999986544321 122 1222 2332
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHHC-CC--CeEEcC-c
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKKA-GA--TDAILE-N 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~~-Ga--d~Vi~p-~ 660 (791)
.+++||.+|++++. | ..|.. ++..+++.+|+..++. +.||.+.- .+.+. |- .+|+-. .
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~viv-vsNP~d~~~~~~~~~~g~p~~~v~g~gt 143 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLV-ASNPVDVITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-ecChHHHHHHHHHHHhCcCHHHEeeccc
Confidence 24799999998875 1 23544 3566677788765444 44554432 23332 33 345444 2
Q ss_pred HHHHHHHHHHHHhhcCCChHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
.+-..|+-..+-+.+++++..++
T Consensus 144 ~LDs~R~~~~la~~l~v~~~~v~ 166 (306)
T cd05291 144 SLDTARLRRALAEKLNVDPRSVH 166 (306)
T ss_pred hHHHHHHHHHHHHHHCCCcccce
Confidence 33345666666666777775544
No 124
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.18 E-value=0.094 Score=57.19 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=52.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++.|+|+|.+|..+++.|. +.|+ +|.++|.+++..+.+++.|...... .+.++. ++++|.|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~----------~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~~~~~-----~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIR----------RLGLAGEIVGADRSAETRARARELGLGDRVT-TSAAEA-----VKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHH----------hcCCCcEEEEEECCHHHHHHHHhCCCCceec-CCHHHH-----hcCCCEE
Confidence 47999999999999999998 6674 8999999999988888766432111 111222 3679999
Q ss_pred EEEeCCHH
Q 003861 610 MIMYTDKK 617 (791)
Q Consensus 610 iv~~~~d~ 617 (791)
|++++.+.
T Consensus 71 iiavp~~~ 78 (307)
T PRK07502 71 ILCVPVGA 78 (307)
T ss_pred EECCCHHH
Confidence 99998753
No 125
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.11 E-value=0.097 Score=57.59 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=65.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE--EEccCCC-----HHHHHhcCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI--LYGDASR-----PAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~--v~GD~t~-----~~~L~~agi~~ 605 (791)
++.|+|.|.+|..++..|. +.|++|.+++.|++.++.+++.+.+. ..+.... ...+.++--++
T Consensus 2 kI~IiGaGa~G~ala~~L~----------~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS----------SKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC
Confidence 4889999999999999998 78999999999999988887643222 1111000 01112221257
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHH--hCCCCcEEEEecChhh
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDMMH 644 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~--l~p~~~iiara~~~~~ 644 (791)
+|.+++++.+... ..++..++. ..++..++.-.+--++
T Consensus 72 ~Dliiiavks~~~-~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVPTQQL-RTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeCHHHH-HHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 8999999987543 233444443 3555567776665544
No 126
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.05 E-value=0.56 Score=55.70 Aligned_cols=113 Identities=16% Similarity=0.100 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhHhcCCccch---hHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHH
Q 003861 352 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR---TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 428 (791)
Q Consensus 352 ~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~---~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l 428 (791)
++......+++.+|++..++-.++|++++..... ..-.+..+.+..+..++.....|+++|++.+...+...+.+..
T Consensus 16 ~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~ 95 (562)
T PRK05326 16 LLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLAT 95 (562)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHH
Confidence 3344455688899999999999999999975211 0111234556778888888899999999999887766655544
Q ss_pred HHHHHHHHH-HHHhhhhcCCCHHHHHHHHHHHhhhhh
Q 003861 429 GLIIIKTLI-ISAIGPRVGLTLQESVRIGLLLSQGGE 464 (791)
Q Consensus 429 ~~ll~K~l~-~~~~~~~~~~~~r~~~~~g~~l~~rG~ 464 (791)
..++.-... .+...+.++.+|.+++.+|..+++-..
T Consensus 96 ~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 96 LGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 444443333 234445678999999999987666543
No 127
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.04 E-value=0.14 Score=56.40 Aligned_cols=93 Identities=19% Similarity=0.146 Sum_probs=60.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--cc-----CCCHHHHHhcCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GD-----ASRPAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--GD-----~t~~~~L~~agi~~ 605 (791)
++.|+|.|.+|..++..|. +.|++|.+++.++++.+.+.+.+.+..+ |. ..-.+.++++ +++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~----------~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~ 74 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAA----------SKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAG 74 (328)
T ss_pred eEEEECcCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcC
Confidence 6999999999999999998 8899999999999988877754221111 10 0001112222 367
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
+|.|++++.++.. . ..++.+.|+..++.-.+
T Consensus 75 aD~Vi~~v~~~~~-~---~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 75 ADFAVVAVPSKAL-R---ETLAGLPRALGYVSCAK 105 (328)
T ss_pred CCEEEEECchHHH-H---HHHHhcCcCCEEEEEee
Confidence 9999999998742 1 22244555544444333
No 128
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.02 E-value=0.049 Score=51.41 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=57.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+-++-|+|.|++|..+++.|. +.|++|+.+.. +++..+++...--..-. . .+.+ -++++|.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~----------~ag~~v~~v~srs~~sa~~a~~~~~~~~~---~---~~~~-~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALA----------RAGHEVVGVYSRSPASAERAAAFIGAGAI---L---DLEE-ILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHH----------HTTSEEEEESSCHH-HHHHHHC--TT-----------TTG-GGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCcccccccccccccccc---c---cccc-ccccCCE
Confidence 3558999999999999999998 88999998864 44456666543111111 1 1222 1478999
Q ss_pred EEEEeCCHHHHHHHHHHHHH--hCCCCcEEEEec---ChhhHHHHHHCCC
Q 003861 609 VMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQ---DMMHLLDLKKAGA 653 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~--l~p~~~iiara~---~~~~~~~L~~~Ga 653 (791)
++++++||...-.....+.. ..|+ ++++... +.+-.+-+++.|+
T Consensus 72 v~iavpDdaI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 72 VFIAVPDDAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp EEE-S-CCHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHHHHTT-
T ss_pred EEEEechHHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHHHCCC
Confidence 99999998544333333322 2233 6777654 3344444566665
No 129
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.00 E-value=1.1 Score=53.27 Aligned_cols=81 Identities=11% Similarity=0.302 Sum_probs=52.4
Q ss_pred ChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh---h-hHHHHHHHHHHHHHHHHHHHHh
Q 003861 366 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---E-WPNVLALLAGLIIIKTLIISAI 441 (791)
Q Consensus 366 ls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~---~-~~~~l~l~l~~ll~K~l~~~~~ 441 (791)
+-.+-|++++|++++..... + -..+++++..+|--.+|++.=++.+.+ . |...+ +.++.++.-.+.++..
T Consensus 35 LG~~~gvLfvgl~~G~~g~~--i---~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~-~a~~~~~~~~~~~~~~ 108 (562)
T TIGR03802 35 LGGVAGSLIVAVLIGQLGIQ--I---DPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREII-LALVFAVSGLITVYAL 108 (562)
T ss_pred cchHHHHHHHHHHHHhcCCC--C---ChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHH
Confidence 33356888999999875331 1 122577999999999999998877653 2 44333 3333444445566677
Q ss_pred hhhcCCCHHHH
Q 003861 442 GPRVGLTLQES 452 (791)
Q Consensus 442 ~~~~~~~~r~~ 452 (791)
.++++++...+
T Consensus 109 ~~~~g~~~~~~ 119 (562)
T TIGR03802 109 AKIFGLDKGTA 119 (562)
T ss_pred HHHhCCCHHHH
Confidence 77788876544
No 130
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=95.00 E-value=0.14 Score=55.93 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=48.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++.|+|+|++|+.+++.|. +.|.++++. +.+++..+.+.+.|+.+. +..+. +++||.|+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~----------~sG~~Viv~~~~~~~~~~~a~~~Gv~~~----s~~ea-----~~~ADiVv 64 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLR----------DSGLNVIVGLRKGGASWKKATEDGFKVG----TVEEA-----IPQADLIM 64 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHH----------HCCCeEEEEECcChhhHHHHHHCCCEEC----CHHHH-----HhcCCEEE
Confidence 46899999999999999998 778887764 445566677766676421 12222 37789999
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
++++++
T Consensus 65 LaVpp~ 70 (314)
T TIGR00465 65 NLLPDE 70 (314)
T ss_pred EeCCcH
Confidence 999976
No 131
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.00 E-value=0.25 Score=45.46 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=67.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|+.-.+.+.+ ...+.+++ +.|.|+++.+.+. +.+.+ .+.| -++.+++ ++.|+++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~--------~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~--~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLR--------SSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD--LEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHH--------TTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS--HHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHh--------cCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH--HHHHHHh---hcCCEEE
Confidence 47899999999999988762 12455654 7799999988864 56777 5554 2344543 3899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDLK 649 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L~ 649 (791)
++++++. ....+..+-+.+ .+|++. +.+.+..+.+.
T Consensus 68 I~tp~~~-h~~~~~~~l~~g--~~v~~EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 68 IATPPSS-HAEIAKKALEAG--KHVLVEKPLALTLEEAEELV 106 (120)
T ss_dssp EESSGGG-HHHHHHHHHHTT--SEEEEESSSSSSHHHHHHHH
T ss_pred EecCCcc-hHHHHHHHHHcC--CEEEEEcCCcCCHHHHHHHH
Confidence 9998754 455555565654 477775 44555555543
No 132
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.00 E-value=0.016 Score=58.45 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=48.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC----------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG---------- 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag---------- 602 (791)
+|.|+|.|.+|..+|-.|. +.|++|+.+|.|+++++.+.+...+. .++..++.+++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA----------~~G~~V~g~D~~~~~v~~l~~g~~p~--~E~~l~~ll~~~~~~~~l~~t~~ 69 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALA----------EKGHQVIGVDIDEEKVEALNNGELPI--YEPGLDELLKENVSAGRLRATTD 69 (185)
T ss_dssp EEEEE--STTHHHHHHHHH----------HTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESE
T ss_pred EEEEECCCcchHHHHHHHH----------hCCCEEEEEeCChHHHHHHhhccccc--cccchhhhhccccccccchhhhh
Confidence 5789999999999999998 89999999999999999988654444 2555566666443
Q ss_pred ----CCCCcEEEEEeCC
Q 003861 603 ----ITSPKAVMIMYTD 615 (791)
Q Consensus 603 ----i~~a~~viv~~~~ 615 (791)
++++|+++++.+.
T Consensus 70 ~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 70 IEEAIKDADVVFICVPT 86 (185)
T ss_dssp HHHHHHH-SEEEE----
T ss_pred hhhhhhccceEEEecCC
Confidence 4468888887754
No 133
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.99 E-value=0.4 Score=51.45 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.++.++|+|.+|..+++.|. +.| .++.+.|.++++.+.+.+ .|.... .+..+. ++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~----------~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~---~~~~e~-----~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI----------NKNIVSPDQIICSDLNVSNLKNASDKYGITIT---TNNNEV-----ANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHH----------HCCCCCCceEEEECCCHHHHHHHHHhcCcEEe---CCcHHH-----HhhC
Confidence 36899999999999999997 444 369999999999888765 564321 122233 3578
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHHH
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~~ 650 (791)
|.+++++..+ .-..+...++.. .++ .++...----..+.+++
T Consensus 65 DiIiLavkP~-~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~ 107 (272)
T PRK12491 65 DILILSIKPD-LYSSVINQIKDQIKND-VIVVTIAAGKSIKSTEN 107 (272)
T ss_pred CEEEEEeChH-HHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHH
Confidence 9999998853 333333444442 333 45554444444444444
No 134
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.98 E-value=0.15 Score=54.26 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=77.1
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+ |++|+.+++.+.+ ..+.+++ ++|.++++.+...+.+.. ..+|.+.+. +++|+++
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~---------~~~~elvav~d~~~~~~~~~~~~~i~----~~~dl~~ll----~~~DvVi 65 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEA---------AEDLELVAAVDRPGSPLVGQGALGVA----ITDDLEAVL----ADADVLI 65 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccccCCCCcc----ccCCHHHhc----cCCCEEE
Confidence 5899998 9999999999872 3466655 478888765443111111 123333332 3689887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHH--CCCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKK--AGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara--~~~~~~~~L~~--~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
..++.+ .....+..+.+.+ .+++.-. .+.++.+.+++ .++.-++.|+.-.+..+..++++
T Consensus 66 d~t~p~-~~~~~~~~al~~G--~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 66 DFTTPE-ATLENLEFALEHG--KPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred ECCCHH-HHHHHHHHHHHcC--CCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHH
Confidence 666543 3355666666665 4555432 25666666654 57778999998777777777765
No 135
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.15 Score=55.55 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=51.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCC-----------EEEccCCCH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFP-----------ILYGDASRP 595 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~-----------~v~GD~t~~ 595 (791)
+++.|+|.|.+|..++..|. ..|++|+++|.+++..+.+.+. +.. -+... +|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~- 72 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA----------RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AG- 72 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CC-
Confidence 46899999999999999998 7899999999999988776542 210 01110 11
Q ss_pred HHHHhcCCCCCcEEEEEeCCHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~ 617 (791)
+++ .++++|.|+.++.++.
T Consensus 73 --~~~-~~~~aDlVi~av~~~~ 91 (311)
T PRK06130 73 --LAA-AVSGADLVIEAVPEKL 91 (311)
T ss_pred --HHH-HhccCCEEEEeccCcH
Confidence 111 2578999999998864
No 136
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.98 E-value=0.11 Score=57.01 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=62.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|++|+.+++.|. .. +.+++++|.++++.+.+. +.+..++. .+.+.++ +.++|.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~----------~~g~~~V~v~~r~~~ra~~la~~~g~~~~~-----~~~~~~~-l~~aDv 241 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLA----------AKGVAEITIANRTYERAEELAKELGGNAVP-----LDELLEL-LNEADV 241 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHcCCeEEe-----HHHHHHH-HhcCCE
Confidence 457999999999999999997 44 468999999999876654 44543332 2234333 577999
Q ss_pred EEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 609 VMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 609 viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
++.+++.++. +.... ..+....+-.+++....+.+
T Consensus 242 Vi~at~~~~~~~~~~~-~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 242 VISATGAPHYAKIVER-AMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred EEECCCCCchHHHHHH-HHhhCCCCCeEEEEeCCCCC
Confidence 9999998765 22221 12222112346666555544
No 137
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.94 E-value=0.21 Score=53.24 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=62.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC---CcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++.|+|+|.+|..+++.|. +.| .++.++|.+++..+++.+. +..+. .+..+. ++++|.
T Consensus 4 ~I~iIG~G~mG~~la~~l~----------~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~---~~~~~~-----~~~adv 65 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLL----------ASGVPAKDIIVSDPSPEKRAALAEEYGVRAA---TDNQEA-----AQEADV 65 (267)
T ss_pred EEEEEechHHHHHHHHHHH----------hCCCCcceEEEEcCCHHHHHHHHHhcCCeec---CChHHH-----HhcCCE
Confidence 5899999999999999997 566 7899999999998888764 54321 122222 357899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~ 650 (791)
|++++..+ ....++..++... +..|+.-.+.- ..+.+++
T Consensus 66 Vil~v~~~-~~~~v~~~l~~~~-~~~vvs~~~gi-~~~~l~~ 104 (267)
T PRK11880 66 VVLAVKPQ-VMEEVLSELKGQL-DKLVVSIAAGV-TLARLER 104 (267)
T ss_pred EEEEcCHH-HHHHHHHHHHhhc-CCEEEEecCCC-CHHHHHH
Confidence 99998764 3334444444432 32344433333 3334443
No 138
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.074 Score=57.56 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
+++.|+|.|.+|..++..|. ..|++|+++|.|++.++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA----------RTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHH
Confidence 46999999999999999998 8899999999999988754
No 139
>PRK03818 putative transporter; Validated
Probab=94.89 E-value=0.46 Score=56.16 Aligned_cols=84 Identities=19% Similarity=0.429 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCCh----HHHHHHHHHhhcc----cCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 121 LAVTVIVVPVFKIARASP----ILGFFFAGIVLNQ----LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 121 L~~a~l~~~l~~rl~lP~----ivg~ilaGillGp----~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
+.++..++.+.-|++++. +.|-+++|+++|. +|..-+.....++.++|+.+++|..|++--++.+...++..
T Consensus 11 l~l~i~lG~~lG~i~i~g~~LG~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G 90 (552)
T PRK03818 11 LALVAVVGLWIGNIKIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSG 90 (552)
T ss_pred HHHHHHHHHhhcceEECCCccccHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhh
Confidence 444445555554544332 3799999999998 56533556777899999999999999999988776665544
Q ss_pred HHHHHHHHHHHH
Q 003861 193 FGMGLTQVVLST 204 (791)
Q Consensus 193 ~~la~~~~llt~ 204 (791)
+.+...+++++.
T Consensus 91 ~~~~~~~~~~~~ 102 (552)
T PRK03818 91 LRLNLFAVLIVI 102 (552)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 140
>PRK04972 putative transporter; Provisional
Probab=94.81 E-value=1.4 Score=52.12 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh---h-hHHHHHHHHHHHHHHHHHHHHh
Q 003861 366 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---E-WPNVLALLAGLIIIKTLIISAI 441 (791)
Q Consensus 366 ls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~---~-~~~~l~l~l~~ll~K~l~~~~~ 441 (791)
+...-|++++|++++..... .-...+++...+|...+|++.-++.+.. . +... ++.++.++.-.+.++..
T Consensus 37 LG~~~g~L~vgl~~g~~~~~-----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~ 110 (558)
T PRK04972 37 LGNSIGVLVVSLLLGQQHFS-----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYL-MLALVMVGSALVIALGL 110 (558)
T ss_pred cCcchHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 33455788888888875321 1223367999999999999988766543 2 2222 22333334444455566
Q ss_pred hhhcCCCHHHH
Q 003861 442 GPRVGLTLQES 452 (791)
Q Consensus 442 ~~~~~~~~r~~ 452 (791)
.+++|+++-..
T Consensus 111 ~~~~~~~~~~~ 121 (558)
T PRK04972 111 GKLFGWDIGLT 121 (558)
T ss_pred HHHhCCCHHHH
Confidence 67788876643
No 141
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.80 E-value=0.082 Score=56.69 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=58.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|..+++.|. +.|+ +|+++|.+++..+.+.+.|.... .++. +++ .++|.||
T Consensus 2 ~I~iIG~G~mG~sla~~l~----------~~g~~~~v~~~d~~~~~~~~~~~~g~~~~---~~~~---~~~--~~aD~Vi 63 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK----------EKGLISKVYGYDHNELHLKKALELGLVDE---IVSF---EEL--KKCDVIF 63 (275)
T ss_pred EEEEEccCHHHHHHHHHHH----------hcCCCCEEEEEcCCHHHHHHHHHCCCCcc---cCCH---HHH--hcCCEEE
Confidence 4789999999999999998 6675 68888999999988887665311 1122 222 2499999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
++++.+...- .+..++.+.++ .++.-+.
T Consensus 64 lavp~~~~~~-~~~~l~~l~~~-~iv~d~g 91 (275)
T PRK08507 64 LAIPVDAIIE-ILPKLLDIKEN-TTIIDLG 91 (275)
T ss_pred EeCcHHHHHH-HHHHHhccCCC-CEEEECc
Confidence 9998764332 33333334444 3555443
No 142
>PRK06182 short chain dehydrogenase; Validated
Probab=94.75 E-value=0.069 Score=56.79 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC------CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG------IT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag------i~ 604 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+.+.+++.+|.+|++.++++- ..
T Consensus 4 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLA----------AQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46888886 899999999998 78999999999999888777778899999999999876541 23
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
..|.+|-..+
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6788876654
No 143
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.75 E-value=0.082 Score=61.61 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|+|+.|...++.|. ..|.+|++.|.+++..+.+++.|...+.++-. ++.+ +++|.||
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~----------~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~-~~~l-----~~~D~VV 75 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALT----------RFGARPTVCDDDPDALRPHAERGVATVSTSDA-VQQI-----ADYALVV 75 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHhCCCEEEcCcch-HhHh-----hcCCEEE
Confidence 457999999999999999998 89999999998888777777778777655432 3333 5678777
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
...+-+..| -....+|+.+ ++|+-+.
T Consensus 76 ~SpGi~~~~-p~~~~a~~~g--i~v~~~i 101 (488)
T PRK03369 76 TSPGFRPTA-PVLAAAAAAG--VPIWGDV 101 (488)
T ss_pred ECCCCCCCC-HHHHHHHHCC--CcEeeHH
Confidence 766555444 3456667654 5666543
No 144
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.74 E-value=0.093 Score=58.61 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=56.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|.|.+|..+++.|. +.|+++.+.|.|++..+.....+..+..-..++ +++ -++++|.||++
T Consensus 2 ~I~iIG~GliG~siA~~L~----------~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVila 67 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIK----------AAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLA 67 (359)
T ss_pred eEEEEEeCHHHHHHHHHHH----------hcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEe
Confidence 5889999999999999998 889999999999887665554444333211122 222 25789999999
Q ss_pred eCCHHHHHHHHHHHH
Q 003861 613 YTDKKRTIEAVQRLR 627 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar 627 (791)
++.+. ...++..++
T Consensus 68 vP~~~-~~~vl~~l~ 81 (359)
T PRK06545 68 VPVDA-TAALLAELA 81 (359)
T ss_pred CCHHH-HHHHHHHHh
Confidence 98753 344444444
No 145
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.73 E-value=0.29 Score=55.31 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=49.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH------------h
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------S 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~------------~ 600 (791)
+|.|+|.|.+|..+|..+. .|++|+++|.|+++++.+.+.-.+. + +..-++.++ .
T Consensus 2 kI~VIGlGyvGl~~A~~lA-----------~G~~VigvD~d~~kv~~l~~g~~~~-~-e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-----------QNHEVVALDILPSRVAMLNDRISPI-V-DKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-----------hCCcEEEEECCHHHHHHHHcCCCCC-C-CcCHHHHHHhCCCcEEEecchh
Confidence 4789999999999998774 4999999999999999887632221 1 110001110 0
Q ss_pred cCCCCCcEEEEEeCCH
Q 003861 601 AGITSPKAVMIMYTDK 616 (791)
Q Consensus 601 agi~~a~~viv~~~~d 616 (791)
.-++++|.++++++++
T Consensus 69 ~~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 69 EAYRDADYVIIATPTD 84 (388)
T ss_pred hhhcCCCEEEEeCCCC
Confidence 1147899999999865
No 146
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.69 E-value=0.18 Score=48.34 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=59.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh--------------hh-----H----HHHHhc--CCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP--------------SV-----V----KESRKL--GFP 586 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~--------------~~-----v----~~~~~~--~~~ 586 (791)
+++|+|+|..|..+++.|. ..|. +++++|.|. +. + +++++. ...
T Consensus 1 ~VliiG~GglGs~ia~~L~----------~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~ 70 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA----------RSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVN 70 (143)
T ss_pred CEEEECCCHHHHHHHHHHH----------HCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcE
Confidence 5899999999999999998 7887 699999882 21 1 222221 222
Q ss_pred --EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 587 --ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 587 --~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
.+..+.+++.. ..-++++|.+|.+.++.+....+...+|+.+ ++.+.
T Consensus 71 i~~~~~~~~~~~~--~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~ 119 (143)
T cd01483 71 VTAVPEGISEDNL--DDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVID 119 (143)
T ss_pred EEEEeeecChhhH--HHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 33344444332 2334688988888887666667777788764 45443
No 147
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.67 E-value=0.11 Score=52.66 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=60.3
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.++++|+|. |.+|+.+++.|. +.|.+|++++.++++.+.+.+ .+..+...|..+.+.+.+ -+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~----------~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLA----------REGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAA-AIK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHH-HHh
Confidence 357999996 999999999998 788999999999988766543 256677788888776654 336
Q ss_pred CCcEEEEEeCCHHH
Q 003861 605 SPKAVMIMYTDKKR 618 (791)
Q Consensus 605 ~a~~viv~~~~d~~ 618 (791)
++|.++.+++....
T Consensus 97 ~~diVi~at~~g~~ 110 (194)
T cd01078 97 GADVVFAAGAAGVE 110 (194)
T ss_pred cCCEEEECCCCCce
Confidence 78988888876654
No 148
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.64 E-value=0.1 Score=56.05 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=58.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH--HHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~--~~L~~agi~~a~~ 608 (791)
..+++|+|+|.+|..+++.|+ +.|+.+.+++.|.+.-...+.... +..|+ +......+.+||.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~----------~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~~~~~~aD~ 67 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALK----------EAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLAEAAAEADL 67 (279)
T ss_pred CcEEEEECCchHHHHHHHHHH----------HcCCeEEEEeecCcHHHHHHHhhc-----CcccccccchhhhhcccCCE
Confidence 458999999999999999999 899999888777766444333222 22222 1122345678999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
||++++=....-.+...+..+-++ .++.-+.
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g-~iv~Dv~ 98 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKG-AIVTDVG 98 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCC-CEEEecc
Confidence 999998644333333333333333 3444433
No 149
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.63 E-value=0.18 Score=51.93 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=66.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+.++|+|.|..|..=++.|. +.|.+++|+-.+. +..+.+.+ .....+. +.-+++-+. +++.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll----------~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-----~~~l 75 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLL----------KAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-----DAFL 75 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-----CceE
Confidence 347999999999999999998 8999999997776 44555443 3445555 555555553 3999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
++++|+|.+.|-.+...|++.+
T Consensus 76 viaAt~d~~ln~~i~~~a~~~~ 97 (210)
T COG1648 76 VIAATDDEELNERIAKAARERR 97 (210)
T ss_pred EEEeCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999975
No 150
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.59 E-value=0.24 Score=50.70 Aligned_cols=89 Identities=18% Similarity=0.079 Sum_probs=60.4
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhHH----HHHh--c
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVK----ESRK--L 583 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v~----~~~~--~ 583 (791)
.+.+|+|+|+|..|..+++.|. ..|. +++++|.|. .+++ ++++ .
T Consensus 20 ~~~~VlviG~GglGs~ia~~La----------~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLA----------GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHH----------HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 3568999999999999999998 7887 799999982 2222 2222 1
Q ss_pred CCC--EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 584 GFP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 584 ~~~--~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
... .+..+.++ +.+.+ -++++|.||.++++-+.-..+...+++.+
T Consensus 90 ~v~i~~~~~~i~~-~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 90 DIQVTALKERVTA-ENLEL-LINNVDLVLDCTDNFATRYLINDACVALG 136 (202)
T ss_pred CCEEEEehhcCCH-HHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 222 22233332 33322 35789999888888777777777888875
No 151
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=94.56 E-value=10 Score=42.64 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=58.3
Q ss_pred HhCChHHHHHHHHhHhcCCc----cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHH-HHHHHHHHHHH
Q 003861 363 KLGFSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLAL-LAGLIIIKTLI 437 (791)
Q Consensus 363 ~lGls~~LgAflaGl~l~~~----~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l-~l~~ll~K~l~ 437 (791)
.+.++...++++.|+++.|. +..+--.+.++.+.++..-+|-++.=+++++..+.+.+...+.+ ++..++.-...
T Consensus 244 ~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 244 GLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999984 11121122344556777777767777789999998876655543 33333334445
Q ss_pred HHHhhhhcCCCHHHHHH
Q 003861 438 ISAIGPRVGLTLQESVR 454 (791)
Q Consensus 438 ~~~~~~~~~~~~r~~~~ 454 (791)
.+...+.+|.++..+..
T Consensus 324 ~fv~fr~~gkdydaavm 340 (368)
T PF03616_consen 324 YFVTFRVMGKDYDAAVM 340 (368)
T ss_pred HHHhhhhhCCChhHHHH
Confidence 55666778888755443
No 152
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.56 E-value=0.076 Score=51.97 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=50.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-----------EEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-----------v~GD~t~~~~L~~a 601 (791)
++.|||.|.+|..+|..|. ++|++|.+.+.|++.++.+.+.+.+. +.. -+|.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la----------~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~----~ 65 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA----------DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE----E 65 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH----H
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH----H
Confidence 3789999999999999998 89999999999999998887643211 111 12321 1
Q ss_pred CCCCCcEEEEEeCCHHH
Q 003861 602 GITSPKAVMIMYTDKKR 618 (791)
Q Consensus 602 gi~~a~~viv~~~~d~~ 618 (791)
-+++||.++++++....
T Consensus 66 a~~~ad~IiiavPs~~~ 82 (157)
T PF01210_consen 66 ALEDADIIIIAVPSQAH 82 (157)
T ss_dssp HHTT-SEEEE-S-GGGH
T ss_pred HhCcccEEEecccHHHH
Confidence 23678999999988654
No 153
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.55 E-value=0.59 Score=54.99 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHH
Q 003861 352 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLI 431 (791)
Q Consensus 352 ~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~l 431 (791)
+.+.+...+++.+++++.++-.++|++++..+....+.-.-+.+..++.|......|+++|+..+..++..+..+.+..+
T Consensus 8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~v 87 (525)
T TIGR00831 8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLV 87 (525)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 33444556888999999999999999998542221111011123457888888899999999999888777666555555
Q ss_pred HHHHHHHHHhh-hhcCCCHHHHHHHHHHHhhhhhHHH
Q 003861 432 IIKTLIISAIG-PRVGLTLQESVRIGLLLSQGGEFAF 467 (791)
Q Consensus 432 l~K~l~~~~~~-~~~~~~~r~~~~~g~~l~~rG~~~l 467 (791)
++-.+.+.... +..+++|..++.+|..+++-...+.
T Consensus 88 lit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 88 VVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 54444433333 3578999999999999888876553
No 154
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.54 E-value=0.12 Score=54.03 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcC----------ChhhHHHHHhcCCCEE-E--cc-CCCH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDL----------NPSVVKESRKLGFPIL-Y--GD-ASRP 595 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~----------d~~~v~~~~~~~~~~v-~--GD-~t~~ 595 (791)
..+++|.|+|.+|+.+++.|. +.|..|+ +.|. |++.+.+..+..-... + +. .+..
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~----------~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~ 100 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLH----------EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNE 100 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCc
Confidence 468999999999999999998 7899999 7788 8887776644321111 1 11 1222
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCcH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.+. .++|.++=++..+..|-. ++.++. +++|+..- +++..+.|++-|+-. .|..
T Consensus 101 ~i~~----~~~Dvlip~a~~~~i~~~---~~~~l~--a~~I~egAN~~~t~~a~~~L~~rGi~~--~PD~ 159 (227)
T cd01076 101 ELLE----LDCDILIPAALENQITAD---NADRIK--AKIIVEAANGPTTPEADEILHERGVLV--VPDI 159 (227)
T ss_pred ccee----ecccEEEecCccCccCHH---HHhhce--eeEEEeCCCCCCCHHHHHHHHHCCCEE--EChH
Confidence 3332 278988777766544444 444443 67777543 366889999998854 4764
No 155
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.52 E-value=0.21 Score=57.70 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=63.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|+++..=++.|. +.|.+|+||-. +++.-+...+..+..+..+..+. .+++++.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll----------~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~------dl~~~~l 75 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLL----------DAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDES------LLDTCWL 75 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCEE
Confidence 458999999999999888887 78999999843 44433322333466666665433 2468899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
|+++|+|.+.|-.+...+|+.+
T Consensus 76 v~~at~d~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 76 AIAATDDDAVNQRVSEAAEARR 97 (457)
T ss_pred EEECCCCHHHhHHHHHHHHHcC
Confidence 9999999999999999999874
No 156
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.51 E-value=1.1 Score=55.58 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhHhcCCccch--hH---------HHHhhhchHhHHHHHHHHHHcccCChHHHHhhhH
Q 003861 354 VAGTSLLTQKLGFSDTLGAFLAGAILAETNFR--TQ---------IEADIRPFRGLLLGLFFVTTGSSIDIELLFREWP 421 (791)
Q Consensus 354 ~~~~~~la~~lGls~~LgAflaGl~l~~~~~~--~~---------i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~ 421 (791)
.-...++...+|.+.++|=.++|++++.+-.. +. -...++.+..+-..+|...+|+++|++.+.....
T Consensus 55 a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k 133 (832)
T PLN03159 55 TRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133 (832)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcch
Confidence 33455677888999999999999999864111 11 1123555666777778888999999999876533
No 157
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.48 E-value=0.33 Score=53.13 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--ccCCC--HHHHHh-cCCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDASR--PAVLLS-AGITSP 606 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--GD~t~--~~~L~~-agi~~a 606 (791)
.+|.|+|.|.+|..++..|. +.|++|+++..++. +..++.|...-. |+... ..+... ...+.+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~----------~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLA----------RAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPC 73 (313)
T ss_pred cEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCC
Confidence 47999999999999999998 78999999998863 445555544322 21100 000000 124678
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC-CCCeEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA-GATDAI 657 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~-Gad~Vi 657 (791)
|.+++++..... ..+...++. ..++..++.-.|--.+.+.+.+. +-.+|+
T Consensus 74 D~vilavK~~~~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 74 DWVLVGLKTTAN-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLL 125 (313)
T ss_pred CEEEEEecCCCh-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEE
Confidence 999999876432 333444444 45666677788877787777654 544444
No 158
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.47 E-value=0.28 Score=52.73 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=34.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~ 579 (791)
++.|+|.|.+|..++..+. ..|++|+++|.|++.+++
T Consensus 5 kI~VIG~G~mG~~ia~~la----------~~g~~V~~~d~~~~~~~~ 41 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA----------VAGYDVVMVDISDAAVDR 41 (282)
T ss_pred EEEEEccCHHHHHHHHHHH----------HCCCceEEEeCCHHHHHH
Confidence 6899999999999999998 789999999999998853
No 159
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.41 E-value=0.11 Score=59.95 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=64.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.+++.|+|+|+.|..+++.|. +.|++|.+.|.++. ..+++++.|..+..|+.. ++-+ .+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~ 77 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLV----------KLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DG 77 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHH----------HCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----cc
Confidence 347999999999999999998 89999999997753 234577778888887654 3323 56
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+|.||++.+=+.+| .....+|+.+ ++|+.+.
T Consensus 78 ~dlVV~Spgi~~~~-p~~~~a~~~~--i~i~s~~ 108 (458)
T PRK01710 78 FDVIFKTPSMRIDS-PELVKAKEEG--AYITSEM 108 (458)
T ss_pred CCEEEECCCCCCCc-hHHHHHHHcC--CcEEech
Confidence 88776664333333 4567777765 7787544
No 160
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.39 E-value=2.1 Score=43.07 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 003861 167 WGILFLLFEMGLELSLARLKALAKFAFG 194 (791)
Q Consensus 167 lgl~~lLF~~Gleldl~~Lk~~~~~~~~ 194 (791)
+.+.+++|..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4678999999999999999988766433
No 161
>PRK06953 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.16 Score=52.20 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=58.1
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CC--CCCc
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI--TSPK 607 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi--~~a~ 607 (791)
.++|.| .|.+|+.+++.|. +.|++|++++.+++..+++++.+...+.+|.+|++.++++ .+ .+.|
T Consensus 3 ~vlvtG~sg~iG~~la~~L~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYR----------ADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred eEEEEcCCCchhHHHHHHHH----------hCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 466776 5899999999998 7899999999999988888777788899999999988774 23 3578
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
.++-..
T Consensus 73 ~vi~~a 78 (222)
T PRK06953 73 AAVYVA 78 (222)
T ss_pred EEEECC
Confidence 776654
No 162
>PLN02712 arogenate dehydrogenase
Probab=94.31 E-value=0.46 Score=57.41 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=66.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.++.|+|+|.+|+.+++.|. +.|++|+++|.+++. +.+.+.|... .++.+-+.+ +++|.|
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~a~~~Gv~~----~~~~~el~~---~~aDvV 429 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMV----------KQGHTVLAYSRSDYS-DEAQKLGVSY----FSDADDLCE---EHPEVI 429 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHH----------HCcCEEEEEECChHH-HHHHHcCCeE----eCCHHHHHh---cCCCEE
Confidence 4457999999999999999998 788999999998654 5555666532 123332211 358999
Q ss_pred EEEeCCHHHHHHHHHHHHH--hCCCCcEEEEecCh--hhHHHHHH---CCCCeE
Q 003861 610 MIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDM--MHLLDLKK---AGATDA 656 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~--l~p~~~iiara~~~--~~~~~L~~---~Gad~V 656 (791)
+++++.+ ....++..... +.|+ .+++-+.+- ...+.+++ .|.+.|
T Consensus 430 ILavP~~-~~~~vi~~l~~~~lk~g-~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 430 LLCTSIL-STEKVLKSLPFQRLKRS-TLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred EECCChH-HHHHHHHHHHHhcCCCC-cEEEECCCccHHHHHHHHHhccCCCceE
Confidence 9999864 33333333332 3344 466655333 23333333 355554
No 163
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.31 E-value=2.6 Score=47.64 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHH--cCCChHHHHHHHHHhhccc----CCc-CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 120 FLAVTVIVVPVFKI--ARASPILGFFFAGIVLNQL----GII-RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 120 lL~~a~l~~~l~~r--l~lP~ivg~ilaGillGp~----gli-~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
.+.++..+....+. +.+|..++.+++|+++.+. +.. -.++.++.++++++-+++-.+=+.+++..+.+..-+.
T Consensus 227 ai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Pl 306 (398)
T TIGR00210 227 CLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPI 306 (398)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34455555555554 7799999999999999872 221 1345899999999999999888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHH----HHHHHhhhccHHHHH--HHHHhcCC
Q 003861 193 FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAV----VIGAALSLSSSAFVL--QLLAEKGE 266 (791)
Q Consensus 193 ~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~al----llga~ls~TS~avv~--~lL~e~~~ 266 (791)
+.+...|++++.+....+ ...++| .+...|. .+|..+..|.+++.. .+-+++|.
T Consensus 307 liil~~q~i~~~l~~~fv------------~fr~mg--------~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 307 ALILLVQVMFMALYAIFV------------TFRLMG--------KDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred HHHHHHHHHHHHHHHHHH------------hHHhcc--------chHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 999999999987665544 234555 2444444 466777777666654 34555665
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHH
Q 003861 267 LPTRFGSATLGILLLQDIAVVPLLVIL 293 (791)
Q Consensus 267 ~~~~~g~l~l~~~~l~Di~~v~~l~i~ 293 (791)
.++-+=-.=+-.+.+-|+...+.+..+
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 444333333344677777766655543
No 164
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.28 E-value=0.2 Score=54.95 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCCCE--EEccCCCHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPI--LYGDASRPAVL 598 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~~~--v~GD~t~~~~L 598 (791)
+++.|+|.|.+|..+|..+. ..|++|++.|.+++..+++++ .+... ..+..+-...+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a----------~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL----------AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCH
Confidence 46999999999999999998 899999999999987655432 22110 00011111123
Q ss_pred HhcCCCCCcEEEEEeCCHHH--HHHHHHHHHHhCCCCcEEEEecChhhHHHHH
Q 003861 599 LSAGITSPKAVMIMYTDKKR--TIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~--n~~~~~~ar~l~p~~~iiara~~~~~~~~L~ 649 (791)
+ ..+++||.|+-+..++.+ ........+...|++ |++...+.-....+.
T Consensus 78 ~-~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la 128 (321)
T PRK07066 78 E-ACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFY 128 (321)
T ss_pred H-HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHH
Confidence 3 246899999999887632 222233444445554 777666655555554
No 165
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.21 E-value=0.39 Score=49.10 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=31.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN 573 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d 573 (791)
.+.+|.|+|+|.+|..++..|. ..|. +++++|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La----------~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLA----------RAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHH----------HcCCCEEEEECCC
Confidence 3568999999999999999998 7898 59999999
No 166
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.14 E-value=1.1 Score=54.44 Aligned_cols=108 Identities=17% Similarity=0.261 Sum_probs=70.9
Q ss_pred HHHHHHhCChHHHHHHHHhHhcCCccch--hHH-----HHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHH
Q 003861 358 SLLTQKLGFSDTLGAFLAGAILAETNFR--TQI-----EADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGL 430 (791)
Q Consensus 358 ~~la~~lGls~~LgAflaGl~l~~~~~~--~~i-----~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ 430 (791)
.++.+.+.++..+-+.++|++++..... +.. ......+..+..++--...|+.++...+...|..++.++...
T Consensus 30 ~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~ 109 (810)
T TIGR00844 30 LFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPV 109 (810)
T ss_pred HHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH
Confidence 3445555566666666666665542110 000 011111566778888889999999999998888877766666
Q ss_pred HHHHHHHHHHhhhh--cCCCHHHHHHHHHHHhhhhhH
Q 003861 431 IIIKTLIISAIGPR--VGLTLQESVRIGLLLSQGGEF 465 (791)
Q Consensus 431 ll~K~l~~~~~~~~--~~~~~r~~~~~g~~l~~rG~~ 465 (791)
+.+-++++.+++++ .+++|..++.+|..++|-.-+
T Consensus 110 M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 110 MTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 66666666665553 499999999999988876643
No 167
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.13 E-value=0.48 Score=56.15 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHH-----cCCChHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHH
Q 003861 121 LAVTVIVVPVFKI-----ARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM 195 (791)
Q Consensus 121 L~~a~l~~~l~~r-----l~lP~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~l 195 (791)
+++...++.+.-| +++-.+.|-+++|+++|.+|.- - -+.+.++|+++++|.+|++.-++.++..+|..+..
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i---~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~ 90 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-I---DPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLRE 90 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-C---ChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHH
Confidence 3344445555544 5566788999999999998762 1 12377899999999999999998887777665555
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC
Q 003861 196 GLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG 265 (791)
Q Consensus 196 a~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~ 265 (791)
....+++........ ..+.+++|.+ .+....++-|+.-+..+.+.....+.+.+
T Consensus 91 ~~~a~~~~~~~~~~~----------~~~~~~~g~~------~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 91 IILALVFAVSGLITV----------YALAKIFGLD------KGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHhCCC------HHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 555544443322221 1135677732 13345555555444444455555665554
No 168
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.12 E-value=0.78 Score=49.48 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=61.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|-.|.++++.|. ..|. .++++|.|.-....+ +.++... + ..+
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLa----------laGVg~itI~D~d~ve~snL---~rqf~~~----~-----~dI------ 70 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLI----------LAGVKSVTLHDTKPCSWSDL---SSQFYLR----E-----EDI------ 70 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHH----------HcCCCeEEEEcCCccchhhc---ccCccCC----h-----HHh------
Confidence 568999999999999999998 7777 588999886543322 2222211 0 011
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+ ....-.+...++++||.++|-+...+ ...+.+.+ .|.||.-.
T Consensus 71 ----G-k~Kaea~~~~L~eLNp~V~V~~~~~~-~~~~~l~~--fdvVV~~~ 113 (286)
T cd01491 71 ----G-KNRAEASQARLAELNPYVPVTVSTGP-LTTDELLK--FQVVVLTD 113 (286)
T ss_pred ----C-HHHHHHHHHHHHHHCCCCEEEEEecc-CCHHHHhc--CCEEEEec
Confidence 1 12344567789999999998776544 33455544 56666544
No 169
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.11 E-value=0.44 Score=51.60 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=34.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~ 579 (791)
++|.|+|.|.+|..++..|. ..|++|+++|.+++..++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~----------~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA----------AAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHH
Confidence 36999999999999999998 789999999999988764
No 170
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.09 E-value=0.07 Score=58.01 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=56.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++|.|. |-+|+.+++.|. +.|++|++++.+++..+...+.+..++.+|.+|++.++++ ++++|.++-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~ 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLL----------EQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFH 70 (328)
T ss_pred eEEEECCccchhHHHHHHHH----------HCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4677875 999999999998 7899999999988775555555788999999999988764 346777765
Q ss_pred Ee
Q 003861 612 MY 613 (791)
Q Consensus 612 ~~ 613 (791)
+.
T Consensus 71 ~a 72 (328)
T TIGR03466 71 VA 72 (328)
T ss_pred ec
Confidence 54
No 171
>PRK09291 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.17 Score=52.92 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~agi~ 604 (791)
++++|.|. |.+|+.+++.|. +.|++|++.+.+++..+.+++ .+..++.+|.+|++.++++--.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLA----------RKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 46888887 799999999998 889999999998877655432 2467889999999999887445
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
+.|.+|-+.+
T Consensus 73 ~id~vi~~ag 82 (257)
T PRK09291 73 DVDVLLNNAG 82 (257)
T ss_pred CCCEEEECCC
Confidence 7888877543
No 172
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=94.02 E-value=0.25 Score=54.20 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCHH
Q 003861 371 GAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQ 450 (791)
Q Consensus 371 gAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r 450 (791)
.+++.|+.++| ..+++++...+--.+++|++-...|..+|++++...-+..+++.+..+++.....++..++++....
T Consensus 178 lplliG~~lgn--l~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g 255 (326)
T PRK05274 178 LPLLVGFILGN--LDPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGGGNG 255 (326)
T ss_pred HHHHHHHHHHh--HHHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeecCCC
Confidence 68899999998 3344555555555679999999999999999886542223333344445555555666676643222
Q ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHcC---CcchhhhhHHHHHHHHHHHhHhHHHHH
Q 003861 451 ---ESVRIGLLLSQGGEFAFVVFSLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEI 504 (791)
Q Consensus 451 ---~~~~~g~~l~~rG~~~lvla~~a~~~g---~i~~~~~~~iv~~vvlt~iltpll~~l 504 (791)
.+...+.+ .-...-+..+.-.. -..+.....+..++++|+++.|++..+
T Consensus 256 ~~g~a~~ttaG-----~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 256 VAGAAAGSTAG-----NAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred cchHHHHHHHH-----HHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 11111111221122 223333344455667899999999774
No 173
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.99 E-value=0.14 Score=58.34 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=51.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHH---------------H
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA---------------V 597 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~---------------~ 597 (791)
++.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+...+. + ++.-++ .
T Consensus 2 kI~vIGlG~~G~~lA~~La----------~~G~~V~~~d~~~~~v~~l~~g~~~~-~-e~~l~~~~~~~~~~g~l~~~~~ 69 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA----------DLGHEVTGVDIDQEKVDKLNKGKSPI-Y-EPGLDELLAKALAAGRLRATTD 69 (411)
T ss_pred EEEEECCCchhHHHHHHHH----------hcCCeEEEEECCHHHHHHhhcCCCCC-C-CCCHHHHHHHhhhcCCeEEECC
Confidence 4789999999999999998 89999999999999998876422211 1 111111 1
Q ss_pred HHhcCCCCCcEEEEEeCCH
Q 003861 598 LLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d 616 (791)
.++ -++++|.++++.+++
T Consensus 70 ~~~-~~~~advvii~vpt~ 87 (411)
T TIGR03026 70 YED-AIRDADVIIICVPTP 87 (411)
T ss_pred HHH-HHhhCCEEEEEeCCC
Confidence 111 146799999998875
No 174
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.18 Score=53.58 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=59.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc------CCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GITS 605 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a------gi~~ 605 (791)
.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+.+...+.+|.+|++.++++ ...+
T Consensus 3 ~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFK----------AAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred EEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5778876 889999999998 8899999999999988887777888899999998877653 2356
Q ss_pred CcEEEEEeC
Q 003861 606 PKAVMIMYT 614 (791)
Q Consensus 606 a~~viv~~~ 614 (791)
.|.+|-..+
T Consensus 73 id~vi~~ag 81 (274)
T PRK05693 73 LDVLINNAG 81 (274)
T ss_pred CCEEEECCC
Confidence 788777664
No 175
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.89 E-value=0.49 Score=51.18 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=35.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
++|.|+|.|.+|..++..|. ..|++|++.|.|++.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA----------LAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHH
Confidence 46999999999999999998 88999999999999877643
No 176
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.86 E-value=0.17 Score=58.72 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++++|+|.|..|..+|+.|. +.|.+|+++|.+++ ..+.+++.|..+..|+... -..+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALL----------ELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCC
Confidence 457999999999999999998 89999999996542 2345677899888876543 2356
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
+|.||++.+-...| .....+++.+ ++++
T Consensus 79 ~D~Vv~s~Gi~~~~-~~~~~a~~~g--i~v~ 106 (480)
T PRK01438 79 TDLVVTSPGWRPDA-PLLAAAADAG--IPVW 106 (480)
T ss_pred CCEEEECCCcCCCC-HHHHHHHHCC--Ceec
Confidence 89888887654433 3455566654 5554
No 177
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.86 E-value=0.33 Score=55.69 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=62.5
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-HhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+| +|.+|..+++.|. +.|++|.++|.|++..++. .+.|..+ .++.+ + -++++|.|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~----------~~G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~---e-~~~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLK----------EKGFEVIVTGRDPKKGKEVAKELGVEY----ANDNI---D-AAKDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHH----------HCCCEEEEEECChHHHHHHHHHcCCee----ccCHH---H-HhccCCEEE
Confidence 478997 8999999999998 7899999999999886443 4445421 12221 1 246789999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC--hhhHHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD--MMHLLDLKK 650 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~--~~~~~~L~~ 650 (791)
++++.+...-.+...+..+.|+ .++.-+.+ ....+.+++
T Consensus 64 lavp~~~~~~vl~~l~~~l~~~-~iViDvsSvK~~~~~~l~~ 104 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPHVKEG-SLLMDVTSVKERPVEAMEE 104 (437)
T ss_pred EecCHHHHHHHHHHHHhhCCCC-CEEEEcccccHHHHHHHHH
Confidence 9998764433223333334454 35554443 334444443
No 178
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.84 E-value=0.25 Score=53.39 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=79.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCH-----------
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRP----------- 595 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~----------- 595 (791)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++..++.++. +..+-.|-.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~ 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA----------RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe
Confidence 37999999999999999998 8899999999999987763211 000011111111
Q ss_pred -HHHHhcCCCCCcEEEEEeCCHHHHHHHH-HHHHHh--CCCCcEEEEecChhhHHHHHHC--------CCCeEEcCcHHH
Q 003861 596 -AVLLSAGITSPKAVMIMYTDKKRTIEAV-QRLRLA--FPAIPIYARAQDMMHLLDLKKA--------GATDAILENAET 663 (791)
Q Consensus 596 -~~L~~agi~~a~~viv~~~~d~~n~~~~-~~ar~l--~p~~~iiara~~~~~~~~L~~~--------Gad~Vi~p~~~~ 663 (791)
..++. +++||.|+-+..+|.+--..+ ..+.+. .|+ .|++...+.-....+... |. +.++|...+
T Consensus 76 ~~~~~~--~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~~~r~~g~-hf~~P~~~~ 151 (286)
T PRK07819 76 TTDLGD--FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKRPGRVLGL-HFFNPVPVL 151 (286)
T ss_pred eCCHHH--hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCCCccEEEE-ecCCCcccC
Confidence 11221 478999999998875433222 233333 334 455554444333333321 22 233432211
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHh
Q 003861 664 SLQLGSKLLKGFGVMSDDVTFLRQLVR 690 (791)
Q Consensus 664 ~~~la~~~l~~l~~~~~~~~~l~~~~~ 690 (791)
. +. .+..+-+.++..++.....+.
T Consensus 152 ~--lv-Elv~~~~T~~~~~~~~~~~~~ 175 (286)
T PRK07819 152 P--LV-ELVPTLVTSEATVARAEEFAS 175 (286)
T ss_pred c--eE-EEeCCCCCCHHHHHHHHHHHH
Confidence 1 11 344445566666666655544
No 179
>PRK07680 late competence protein ComER; Validated
Probab=93.77 E-value=0.68 Score=49.57 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=63.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.|+|+|.+|..+++.|. +.| .++.+.|.++++.+.+.+. +..+ ..+..+.+ +++
T Consensus 2 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~---~~~~~~~~-----~~a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL----------ESGAVKPSQLTITNRTPAKAYHIKERYPGIHV---AKTIEEVI-----SQS 63 (273)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCHHHHHHHHHHcCCeEE---ECCHHHHH-----HhC
Confidence 3789999999999999997 556 3799999999988877653 3322 12222333 468
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHHHC
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~~~ 651 (791)
|.+++++.++ ....++..++.. .++ .++.....-...+.+++.
T Consensus 64 DiVilav~p~-~~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 64 DLIFICVKPL-DIYPLLQKLAPHLTDE-HCLVSITSPISVEQLETL 107 (273)
T ss_pred CEEEEecCHH-HHHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHH
Confidence 9999998643 333444444433 333 455555554455566543
No 180
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.65 E-value=0.2 Score=57.75 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=65.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-H----HHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-V----KESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v----~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|.|+.|...|+.|. +.|++|.+.|.++.. . +.+++.|..+..|...+.+.++. ..+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d 70 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK----------AQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPD 70 (459)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCC
Confidence 5899999999999999998 899999999986542 2 23667788888887665543322 346788
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.||+..+-+.+| .....+|+.+ ++++-+
T Consensus 71 ~vv~s~gi~~~~-~~~~~a~~~~--i~v~~~ 98 (459)
T PRK02705 71 LVVVSPGIPWDH-PTLVELRERG--IEVIGE 98 (459)
T ss_pred EEEECCCCCCCC-HHHHHHHHcC--CcEEEh
Confidence 887766555555 3456667764 566543
No 181
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.23 Score=50.85 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=56.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
+.++|.|. |..|+.+++.|. ++ ++|++++.+++..+++.+ .+..++.+|.+|++.++++ .+++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~----------~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 4 PTALITGASRGIGAAIARELA----------PT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHH----------hh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCC
Confidence 35777775 889999999998 56 999999999887665543 3678899999999988764 33468
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.+|-+.+
T Consensus 73 d~vi~~ag 80 (227)
T PRK08219 73 DVLVHNAG 80 (227)
T ss_pred CEEEECCC
Confidence 88876654
No 182
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.59 E-value=0.39 Score=53.31 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-c-cCC------CHHHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-G-DAS------RPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-G-D~t------~~~~L~~ag 602 (791)
..++.|+|.|.+|..++..|. +.| ++++...|++.++.+++.+.+.-+ + +.. -.+-+++ .
T Consensus 7 ~mkI~IiGaGa~G~alA~~La----------~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICA----------RRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-A 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-H
Confidence 347999999999999999998 677 788888999999888765432111 0 100 0011222 2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMH 644 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~ 644 (791)
++++|.++++++... .-.++..++. +.++..++.-++--++
T Consensus 75 ~~~aDlVilavps~~-~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 75 ANCADVVVMGVPSHG-FRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HhcCCEEEEEeCHHH-HHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 578899999998643 2233344443 4555556666665444
No 183
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=93.54 E-value=3.1 Score=47.88 Aligned_cols=95 Identities=25% Similarity=0.325 Sum_probs=55.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++++|+|.|..|+.+++.|.+ ..+.|++++. +|.|++... .-.|.+++ |+..| ..+-+.-.+.|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~--~i~g~pVl-g~~~~--l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSR-------NPDLGYRVVGFVDDRPSDRV--EVAGLPVL-GKLDD--LVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhh-------CccCCeEEEEEEeCCccccc--ccCCCccc-CCHHH--HHHHHHhCCCCEE
Confidence 4579999999999999999962 0134565554 676655421 22355543 44332 2222334567878
Q ss_pred EEEeCCHH--HHHHHHHHHHHhCCCCcEEE
Q 003861 610 MIMYTDKK--RTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 610 iv~~~~d~--~n~~~~~~ar~l~p~~~iia 637 (791)
+++.++.+ .-..+...+++.+.+++++-
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 88877643 22355667777654444443
No 184
>PLN00106 malate dehydrogenase
Probab=93.52 E-value=0.7 Score=50.81 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=88.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhh--HHHHHhcCCCEEEccC-CCHHHHHhcCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGFPILYGDA-SRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~--v~~~~~~~~~~v~GD~-t~~~~L~~agi~ 604 (791)
+.+|.|+|. |++|..++..|. ..+ .+++++|.++.. +.++.+........+. .+.+ +. ..++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~----------~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d-~~-~~l~ 85 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMK----------MNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQ-LG-DALK 85 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCC-HH-HHcC
Confidence 458999999 999999999986 333 379999998821 1123322223222232 1212 21 3568
Q ss_pred CCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh------HHHHHHC-C--CCeEEcCc
Q 003861 605 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH------LLDLKKA-G--ATDAILEN 660 (791)
Q Consensus 605 ~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~------~~~L~~~-G--ad~Vi~p~ 660 (791)
++|.||++.+. | ..|.. ++..+++.+|+..+++ +.|+.+ ...+.+. | .++|+--.
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aiviv-vSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNI-ISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 89999888764 1 23444 4567777888855554 455543 2234443 3 37777766
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
..-+.|+...+-+.+++++..++.
T Consensus 165 ~LDs~Rl~~~lA~~lgv~~~~V~~ 188 (323)
T PLN00106 165 TLDVVRANTFVAEKKGLDPADVDV 188 (323)
T ss_pred cchHHHHHHHHHHHhCCChhheEE
Confidence 677778888888888888866543
No 185
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.48 E-value=0.023 Score=54.34 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=53.8
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
.+|+|.|..++.+++... ..|++|+++|.+++... ...-+. ....++..+...+...++| +++
T Consensus 1 L~I~GaG~va~al~~la~----------~lg~~v~v~d~r~e~~~-----~~~~~~-~~~~~~~~~~~~~~~~t~V-v~t 63 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAA----------LLGFRVTVVDPRPERFP-----EADEVI-CIPPDDILEDLEIDPNTAV-VMT 63 (136)
T ss_dssp EEEES-STCHHHHHHHHH----------HCTEEEEEEES-CCC-T-----TSSEEE-CSHHHHHHHHC-S-TT-EE-E--
T ss_pred CEEEeCcHHHHHHHHHHH----------hCCCEEEEEcCCccccC-----CCCccE-ecChHHHHhccCCCCCeEE-EEc
Confidence 479999999999999998 89999999999988654 222222 2233556677788888887 566
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHH
Q 003861 614 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 647 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~ 647 (791)
.+.+....+...+-+..+ -+|=.-.........
T Consensus 64 h~h~~D~~~L~~~l~~~~-~YiG~lGS~~k~~~~ 96 (136)
T PF13478_consen 64 HDHELDAEALEAALASPA-RYIGLLGSRRKAARR 96 (136)
T ss_dssp S-CCCHHHHHHHHTTSS--SEEEESS-HHHHHHH
T ss_pred CCchhHHHHHHHHHcCCC-CEEEeecCchHHHHH
Confidence 554444444445544432 234443333333333
No 186
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.46 E-value=0.93 Score=48.71 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=55.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCCh-hhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~-~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.++|+|.+|..+++.|. +.| .++++.|.++ ++.+.+.+ .+.... . +..+. ++++
T Consensus 5 kI~~IG~G~mG~aia~~l~----------~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~--~~~e~-----~~~a 66 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLL----------HANVVKGEQITVSNRSNETRLQELHQKYGVKGT-H--NKKEL-----LTDA 66 (279)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-C--CHHHH-----HhcC
Confidence 6899999999999999997 555 7789999865 46666654 354322 1 11222 3678
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEe
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARA 639 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara 639 (791)
|.|++++.++.. ..++..++.. .++ ++++..
T Consensus 67 DvVilav~p~~~-~~vl~~l~~~~~~~-~liIs~ 98 (279)
T PRK07679 67 NILFLAMKPKDV-AEALIPFKEYIHNN-QLIISL 98 (279)
T ss_pred CEEEEEeCHHHH-HHHHHHHHhhcCCC-CEEEEE
Confidence 999999987543 2333444443 344 444443
No 187
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.46 E-value=0.09 Score=50.13 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=54.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a 606 (791)
..++++|+|.|..|+.++..|. +.|.+ +.++..++++.+++.+. +..+-..+..+.. ..+.++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~----------~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALA----------ALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEA 76 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHH----------HTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTE
T ss_pred CCCEEEEECCHHHHHHHHHHHH----------HcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhC
Confidence 3568999999999999999998 77887 99999999998887653 2333333333333 124678
Q ss_pred cEEEEEeCCHHH
Q 003861 607 KAVMIMYTDKKR 618 (791)
Q Consensus 607 ~~viv~~~~d~~ 618 (791)
|.+|.+|+....
T Consensus 77 DivI~aT~~~~~ 88 (135)
T PF01488_consen 77 DIVINATPSGMP 88 (135)
T ss_dssp SEEEE-SSTTST
T ss_pred CeEEEecCCCCc
Confidence 999888887543
No 188
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.46 E-value=0.58 Score=48.40 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=58.8
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--------CCCE-EEccCCCHHHHHhcC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--------GFPI-LYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--------~~~~-v~GD~t~~~~L~~ag 602 (791)
++.|+| .|.+|..+++.|. +.|++|++.+.++++.+.+.+. +... +.. .++.+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~----------~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea----- 65 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA----------KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEA----- 65 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH----------hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHH-----
Confidence 378997 8999999999998 7899999999999988776542 1110 111 122222
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 642 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~ 642 (791)
++++|.+++++..... ..++..++...++ +++..+.+.
T Consensus 66 ~~~aDvVilavp~~~~-~~~l~~l~~~l~~-~vvI~~~ng 103 (219)
T TIGR01915 66 AKRADVVILAVPWDHV-LKTLESLRDELSG-KLVISPVVP 103 (219)
T ss_pred HhcCCEEEEECCHHHH-HHHHHHHHHhccC-CEEEEeccC
Confidence 4578999999887533 2223334333333 566555444
No 189
>PRK08264 short chain dehydrogenase; Validated
Probab=93.44 E-value=0.21 Score=51.67 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
.+.++|.|. |.+|+.+++.|. +.|+ +|++++.+++..+. ...+..++.+|.+|++.++++ ...+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~----------~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLL----------ARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDV 74 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 356888885 999999999998 8898 99999999887654 334577889999999887653 33457
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|++|-+.+
T Consensus 75 d~vi~~ag 82 (238)
T PRK08264 75 TILVNNAG 82 (238)
T ss_pred CEEEECCC
Confidence 87766654
No 190
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.44 E-value=0.25 Score=51.19 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhc--CCCCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA--GITSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~a--gi~~a~ 607 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .+..++.+|.+|++.++++ .....|
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALA----------QRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 46888887 799999999998 889999999999988776654 3577889999999877654 234578
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
.+|-..+
T Consensus 80 ~vi~~ag 86 (245)
T PRK07060 80 GLVNCAG 86 (245)
T ss_pred EEEECCC
Confidence 7776553
No 191
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.43 E-value=1.7 Score=42.63 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHcCCC--hHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHH
Q 003861 120 FLAVTVIVVPVFKIARAS--PILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAF 193 (791)
Q Consensus 120 lL~~a~l~~~l~~rl~lP--~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~ 193 (791)
.+.++.+.+.+++++|+| ..+|-++++.++.-.+.. +...-+.+.+.+.+++--.+|.+++.+.+++..+...
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~-~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGL-EITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455777888899999998 677777777777644432 2234456777888888899999999999988776544
No 192
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.41 E-value=0.38 Score=52.82 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=59.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|.|.|-.|....+..+ ..|.+|+++|.++++.+.+++.|...+.-.. |++..++..- .+|.++
T Consensus 167 G~~V~I~G~GGlGh~avQ~Ak----------a~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAK----------AMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcEEE
Confidence 457999999999999988887 7899999999999999999999877766433 7766666543 399998
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
.+.+
T Consensus 235 ~tv~ 238 (339)
T COG1064 235 DTVG 238 (339)
T ss_pred ECCC
Confidence 8888
No 193
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.19 Score=51.96 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=54.6
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcC--C-CCCc
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG--I-TSPK 607 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~ag--i-~~a~ 607 (791)
+++|.|. |.+|+.+++.|. ++|++|++++.++++.+...+ .+..++.+|.+|++.++++- + ++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id 71 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFR----------NDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLD 71 (223)
T ss_pred eEEEEeCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCc
Confidence 3677776 899999999998 889999999999988776643 46788999999999877541 1 2467
Q ss_pred EEEEE
Q 003861 608 AVMIM 612 (791)
Q Consensus 608 ~viv~ 612 (791)
.+|-.
T Consensus 72 ~lv~~ 76 (223)
T PRK05884 72 TIVNV 76 (223)
T ss_pred EEEEC
Confidence 76654
No 194
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.17 Score=52.27 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=55.9
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc---
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a--- 601 (791)
.+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++.+ ...+++.+|.+|++.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALL----------AEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHH----------HCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 356888875 999999999998 789999999999987655533 3467889999999876542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|-+.
T Consensus 76 ~~~~~~~~d~vi~~a 90 (237)
T PRK07326 76 IVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678877654
No 195
>PLN02427 UDP-apiose/xylose synthase
Probab=93.41 E-value=0.17 Score=56.98 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~ag 602 (791)
.+|+|.|. |-+|+.+++.|. +. |++|+++|.+++..+.+.+ .+++++.||.+|++.++++
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~----------~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLM----------TETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL- 83 (386)
T ss_pred cEEEEECCcchHHHHHHHHHH----------hcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-
Confidence 46889985 999999999998 55 6999999988776655432 2477899999999988775
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++++|+||=+.
T Consensus 84 ~~~~d~ViHlA 94 (386)
T PLN02427 84 IKMADLTINLA 94 (386)
T ss_pred hhcCCEEEEcc
Confidence 34578776443
No 196
>PLN02712 arogenate dehydrogenase
Probab=93.37 E-value=0.24 Score=59.72 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=49.9
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+.++.|+|+|++|+.+++.|. +.|++|+++|.+++. +.+++.|... .++.+.+ -.+++|.
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~e~---~~~~aDv 111 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLI----------SQGHTVLAHSRSDHS-LAARSLGVSF----FLDPHDL---CERHPDV 111 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHHHH---hhcCCCE
Confidence 34567999999999999999998 789999999998554 4455556432 2233221 1245888
Q ss_pred EEEEeCCH
Q 003861 609 VMIMYTDK 616 (791)
Q Consensus 609 viv~~~~d 616 (791)
|+++++.+
T Consensus 112 ViLavP~~ 119 (667)
T PLN02712 112 ILLCTSII 119 (667)
T ss_pred EEEcCCHH
Confidence 88888854
No 197
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.36 E-value=0.62 Score=49.74 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhh-------------------H----HHHHh--c
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSV-------------------V----KESRK--L 583 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~-------------------v----~~~~~--~ 583 (791)
.+.+|+|+|+|-+|..+++.|. ..| -+++++|.|.-. + +++++ .
T Consensus 29 ~~s~VlVvG~GGVGs~vae~La----------r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP 98 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALA----------RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP 98 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHH----------HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC
Confidence 3568999999999999999998 677 479999988211 1 22222 2
Q ss_pred CCCEEEc-cCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 584 GFPILYG-DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 584 ~~~~v~G-D~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
...+..- +..+++...+.-..++|.||.++++......+...+++.+ +++|.
T Consensus 99 ~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~ 151 (268)
T PRK15116 99 ECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVT 151 (268)
T ss_pred CcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 2222211 2223444444434579999888888777777788888875 56654
No 198
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.33 E-value=0.31 Score=55.14 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=54.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH------HH--HhcCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK------ES--RKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~------~~--~~~~~~~v~GD~t~~~~L~~agi 603 (791)
.++|.|. |.+|+.+++.|. ++|++|++++.+++..+ .. ...+.+++.||.+|++.++++--
T Consensus 62 kVLVtGatG~IG~~l~~~Ll----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 62 TVLVVGATGYIGKFVVRELV----------RRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHH
Confidence 5778876 999999999998 78999999998875432 11 12468899999999999887522
Q ss_pred C---CCcEEEEEe
Q 003861 604 T---SPKAVMIMY 613 (791)
Q Consensus 604 ~---~a~~viv~~ 613 (791)
+ ++|.|+.+.
T Consensus 132 ~~~~~~D~Vi~~a 144 (390)
T PLN02657 132 SEGDPVDVVVSCL 144 (390)
T ss_pred HhCCCCcEEEECC
Confidence 2 689887554
No 199
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.33 E-value=0.28 Score=53.84 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=50.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+++.|+|+|.+|+.+++.|+ +.|++|++.+.+++ ..+.+++.|+.+. +..+. +++||.|
T Consensus 17 gktIgIIG~GsmG~AlA~~L~----------~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s~~ea-----a~~ADVV 77 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLR----------DSGVDVVVGLREGSKSWKKAEADGFEVL----TVAEA-----AKWADVI 77 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHH----------HCCCEEEEEECCchhhHHHHHHCCCeeC----CHHHH-----HhcCCEE
Confidence 346999999999999999998 88999988776644 3444555666431 22233 4678999
Q ss_pred EEEeCCHHH
Q 003861 610 MIMYTDKKR 618 (791)
Q Consensus 610 iv~~~~d~~ 618 (791)
+++++++..
T Consensus 78 vLaVPd~~~ 86 (330)
T PRK05479 78 MILLPDEVQ 86 (330)
T ss_pred EEcCCHHHH
Confidence 999987643
No 200
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.27 E-value=0.69 Score=49.44 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=74.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEE-Ec-CChhhH-HHHHh------cCCCEEEccCCCHHHHHhcC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FD-LNPSVV-KESRK------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID-~d~~~v-~~~~~------~~~~~v~GD~t~~~~L~~ag 602 (791)
++.|+| +|++|+.+++.+.+ ..+.+++. +| .+++.. +.+.+ .+.. ++ +|.+.+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~---------~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~-~~---~d~~~l---- 65 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALA---------AEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVP-VT---DDLEAV---- 65 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccCCCHHHhcCcCcCCce-ee---CCHHHh----
Confidence 589999 69999999999972 46777555 66 344332 11111 1111 11 333334
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE--ecChhhHHHHH----HCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR--AQDMMHLLDLK----KAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar--a~~~~~~~~L~----~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
..++|++|.++.. +.-...+..+.+.+ .++++- ..+++..+.++ +.|+--++.|+...|..+..++++
T Consensus 66 ~~~~DvVIdfT~p-~~~~~~~~~al~~g--~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~ 139 (266)
T TIGR00036 66 ETDPDVLIDFTTP-EGVLNHLKFALEHG--VRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLE 139 (266)
T ss_pred cCCCCEEEECCCh-HHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 2568988888754 44455566666664 455542 34555555554 445667788998888888777765
No 201
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.27 E-value=0.21 Score=55.36 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.7
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~agi 603 (791)
...+++|.|. |-+|+.+++.|. +.|++|++++.+++..+...+ .++.++.+|.+|++.++++ +
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLL----------QRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-H
Confidence 4457999984 899999999998 789999999888776544321 2467889999999888775 3
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
+++|.||-+.
T Consensus 78 ~~~d~Vih~A 87 (353)
T PLN02896 78 KGCDGVFHVA 87 (353)
T ss_pred cCCCEEEECC
Confidence 4577766554
No 202
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.26 E-value=0.75 Score=47.43 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=57.4
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCCh------------------hhHH----HHHh--cC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVK----ESRK--LG 584 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~------------------~~v~----~~~~--~~ 584 (791)
.+.+|+|+|+|.+|..+++.|. ..|.. ++++|.|. .+++ ++++ .+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALA----------RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC
Confidence 3568999999999999999998 77886 99999982 1122 2222 22
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
...+..+.+++ .+.+ -++++|.||.++++.+.-..+...+++.
T Consensus 97 v~v~~~~~~i~~~-~~~~-~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 97 VEIEAHNEKIDED-NIEE-LFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred CEEEEEeeecCHH-HHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 22333344433 2222 3578998888887766555566666666
No 203
>PLN02858 fructose-bisphosphate aldolase
Probab=93.24 E-value=0.59 Score=60.93 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+++-++|+|.+|..+++.|. +.|++|.+.|.++++++.+.+.|... ..+++.+ ++++|.|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvV 384 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLL----------KSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVL 384 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEE
Confidence 3457999999999999999998 89999999999999999988776433 2334322 3578999
Q ss_pred EEEeCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hhhH----HHHHH--CCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MMHL----LDLKK--AGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~----~ar~l~p~~~iiara~~--~~~~----~~L~~--~Gad~Vi~p 659 (791)
+++.++++..-.+.. .+..+.++ .+++-..+ ++.. +.+++ .|+..+=.|
T Consensus 385 i~~V~~~~~v~~Vl~g~~g~~~~l~~g-~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 385 VIMVANEVQAENVLFGDLGAVSALPAG-ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred EEecCChHHHHHHHhchhhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 999998754333321 22233343 45554433 3333 44455 677766555
No 204
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.27 Score=52.29 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ ....++.+|.+|++.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLL----------ARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888885 899999999998 889999999999988777654 2567889999999877653
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-+.
T Consensus 73 ~~~~id~vi~~a 84 (276)
T PRK06482 73 ALGRIDVVVSNA 84 (276)
T ss_pred HcCCCCEEEECC
Confidence 234678777654
No 205
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.21 E-value=0.23 Score=52.74 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+.++|||||.+|+.-|+.|+ ..|..|.|-|.||-..-++.-+|+++..- +++ ++++|.+
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLk----------g~g~~VivTEiDPI~ALQAaMeG~~V~tm--------~ea-~~e~dif 273 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALK----------GFGARVIVTEIDPICALQAAMEGYEVTTL--------EEA-IREVDIF 273 (434)
T ss_pred cccEEEEeccCccchhHHHHHh----------hcCcEEEEeccCchHHHHHHhhccEeeeH--------HHh-hhcCCEE
Confidence 3457999999999999999998 89999999999999877777788888753 332 4677877
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.+|++ .|+....+.+++- +--|++.
T Consensus 274 VTtTGc--~dii~~~H~~~mk-~d~IvCN 299 (434)
T KOG1370|consen 274 VTTTGC--KDIITGEHFDQMK-NDAIVCN 299 (434)
T ss_pred EEccCC--cchhhHHHHHhCc-CCcEEec
Confidence 777776 4666677777763 3245553
No 206
>PLN02858 fructose-bisphosphate aldolase
Probab=93.17 E-value=0.63 Score=60.62 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+++-++|+|.+|..+++.|. +.|++|.+.|.++++++++.+.|.... .++.-+- +++|.|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~----------~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~a----~~advV 64 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLL----------RSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEAA----KDAAAL 64 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHHH----hcCCEE
Confidence 3567999999999999999998 899999999999999999998875432 2333222 568999
Q ss_pred EEEeCCHHHHHHHHH----HHHHhCCCCcEEEEec--Chh----hHHHHHHCC--CCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DMM----HLLDLKKAG--ATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~----~ar~l~p~~~iiara~--~~~----~~~~L~~~G--ad~Vi~p 659 (791)
+++.++++....+.. .+..+.|+ .+++-.. +++ -.+.+++.| +..+=.|
T Consensus 65 i~~l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP 125 (1378)
T PLN02858 65 VVVLSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125 (1378)
T ss_pred EEEcCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999998765444431 22233343 4555433 333 334456778 6555444
No 207
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.17 E-value=0.51 Score=51.54 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHH-HHH---hcC----C-CEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK-ESR---KLG----F-PILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~-~~~---~~~----~-~~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..+|..+. ..|. +|+++|.+++..+ ++. +.+ . .-+.. .+| +++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la----------~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d---~~~- 66 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA----------EKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNN---YAD- 66 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCC---HHH-
Confidence 36899999999999999997 6665 8999999877543 211 111 1 11221 122 222
Q ss_pred CCCCCcEEEEEeCC-----H------HHHHHHHH----HHHHhCCCCcEEEEecChhhHH---HHHHCCC--CeEEcCc-
Q 003861 602 GITSPKAVMIMYTD-----K------KRTIEAVQ----RLRLAFPAIPIYARAQDMMHLL---DLKKAGA--TDAILEN- 660 (791)
Q Consensus 602 gi~~a~~viv~~~~-----d------~~n~~~~~----~ar~l~p~~~iiara~~~~~~~---~L~~~Ga--d~Vi~p~- 660 (791)
+++||.+|++.+. . ..|..++. .+++.+|+..++ .+.||.+.- ..+..|- .+|+---
T Consensus 67 -~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iI-v~tNP~di~t~~~~~~sg~~~~rviG~g~ 144 (305)
T TIGR01763 67 -TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIV-VVSNPLDAMTYVAWQKSGFPKERVIGQAG 144 (305)
T ss_pred -hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCcHHHHHHHHHHHHCcCHHHEEEecc
Confidence 5899999999872 1 24665544 356667775444 445544332 2344343 3465542
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTFL 685 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~l 685 (791)
..-..|+-+.+-+.+++++..++..
T Consensus 145 ~lds~R~~~~la~~l~v~~~~v~~~ 169 (305)
T TIGR01763 145 VLDSARFRTFIAMELGVSVQDVTAC 169 (305)
T ss_pred chHHHHHHHHHHHHhCcCHHHeeee
Confidence 3334456666777778888765543
No 208
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.15 E-value=16 Score=40.10 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 162 KVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 162 ~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
+....+++..+.|..|+.++.+++++..+..
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~ 60 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNW 60 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence 4677888999999999999999999876554
No 209
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.15 E-value=0.11 Score=51.90 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=46.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|+ ..|.+|++.|..++......+.++.. + +-++.++ ++|.|+
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~~~~~~~~~~~~---~-~l~ell~-----~aDiv~ 96 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLK----------AFGMRVIGYDRSPKPEEGADEFGVEY---V-SLDELLA-----QADIVS 96 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSCHHHHHHHHTTEEE---S-SHHHHHH-----H-SEEE
T ss_pred CCEEEEEEEcCCcCeEeeeee----------cCCceeEEecccCChhhhccccccee---e-ehhhhcc-----hhhhhh
Confidence 457999999999999999998 89999999999998766444443311 1 2234443 588888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
+..+-
T Consensus 97 ~~~pl 101 (178)
T PF02826_consen 97 LHLPL 101 (178)
T ss_dssp E-SSS
T ss_pred hhhcc
Confidence 88774
No 210
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.04 E-value=0.42 Score=55.64 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-------------H
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-------------A 596 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-------------~ 596 (791)
...+|+|+|.|..|...+..++ ..|.+|+++|.++++.+.+++.|...+.-|..++ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak----------~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAG----------SLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchh
Confidence 4668999999999999999998 8899999999999999999999988654444321 1
Q ss_pred HHH------hcCCCCCcEEEEEeCCHH---HHHHHHHHHHHhCCCCcEEEEe
Q 003861 597 VLL------SAGITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 597 ~L~------~agi~~a~~viv~~~~d~---~n~~~~~~ar~l~p~~~iiara 639 (791)
..+ .-.++.+|.+|-++..+. ..+..-...+...|+-.|+-..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 112467999988887642 1122244555566654444333
No 211
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.03 E-value=0.15 Score=57.62 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=86.8
Q ss_pred cCCCCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHH-Hhc--CCCEEEccCCCHHHHHh
Q 003861 529 EGSEPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKES-RKL--GFPILYGDASRPAVLLS 600 (791)
Q Consensus 529 ~~~~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~-~~~--~~~~v~GD~t~~~~L~~ 600 (791)
..++|++|||.= .+..-+-+.|.+ |+++.+.+||....-+.. .+-+ .++ .++..+|..-++.-|.+
T Consensus 355 hgkkhivvcghityesvshflkdflhe------drddvdvevvflhr~~pdleleglfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLKDFLHE------DRDDVDVEVVFLHRISPDLELEGLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHHHHhhc------cccccceEEEEEecCCCCcchHHHHhhheeeEEEecccccChhhhhh
Confidence 468899999963 334444444441 345555666666543322 1222 222 35678899999999999
Q ss_pred cCCCCCcEEEEEeC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH-------HCCCCeEEcCcHHHHH
Q 003861 601 AGITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK-------KAGATDAILENAETSL 665 (791)
Q Consensus 601 agi~~a~~viv~~~--------~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~-------~~Gad~Vi~p~~~~~~ 665 (791)
..+++||+..+..+ +|..|++-+...|...|+++||...-+-.+...|. |-| |+||+-.+.-=-
T Consensus 429 vki~~adaclvlankyc~dpdaedaanimrvisiknys~dirvi~qlmqyhnkayllnipswdwk~g-ddviclaelklg 507 (1103)
T KOG1420|consen 429 VKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSPDIRVITQLMQYHNKAYLLNIPSWDWKEG-DDVICLAELKLG 507 (1103)
T ss_pred eeccccceeeeecccccCCCChhhhhhheEEEEeccCCCchhHHHHHHHhhchheeecCCCcccccC-CceEEehhhhhh
Confidence 99999999877664 25678887888888888888877655555544443 234 456665543323
Q ss_pred HHHHHHHh
Q 003861 666 QLGSKLLK 673 (791)
Q Consensus 666 ~la~~~l~ 673 (791)
-+|...+.
T Consensus 508 fiaqscla 515 (1103)
T KOG1420|consen 508 FIAQSCLA 515 (1103)
T ss_pred hhHHHhhc
Confidence 34555554
No 212
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.02 E-value=0.22 Score=51.81 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=49.2
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhc
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~a 601 (791)
.++|.| .|.+|+.+++.|. ++|++|++++.++++.+++.+. ....+.+|.+|++.++++
T Consensus 3 ~vlItGas~giG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYA----------KQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 467776 5899999999998 8899999999999887776543 467889999999977764
No 213
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.98 E-value=0.38 Score=56.15 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=50.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc------CCCE-------EEccCCCHHHHH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPI-------LYGDASRPAVLL 599 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~------~~~~-------v~GD~t~~~~L~ 599 (791)
++.|+|.|.+|..+|..|. +.|++|++.|.+++..+.+.+. ...- ..|..+-.+.++
T Consensus 6 kIavIG~G~MG~~iA~~la----------~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ 75 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFL----------LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLA 75 (495)
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHH
Confidence 6899999999999999998 8899999999999987664320 0000 001111111232
Q ss_pred hcCCCCCcEEEEEeCCHH
Q 003861 600 SAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d~ 617 (791)
+ -+++||.|+.+..++.
T Consensus 76 e-a~~~aD~Vieavpe~~ 92 (495)
T PRK07531 76 E-AVAGADWIQESVPERL 92 (495)
T ss_pred H-HhcCCCEEEEcCcCCH
Confidence 2 2578999999988874
No 214
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.98 E-value=0.96 Score=48.60 Aligned_cols=142 Identities=12% Similarity=0.133 Sum_probs=73.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|.+|..+++.|. +.| +++++++.++ ++.+.+.+....+.. .++.+ ++ ++++|
T Consensus 3 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~--~~~~~---e~-~~~aD 66 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLL----------ETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL--ADNEA---EI-FTKCD 66 (277)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE--eCCHH---HH-HhhCC
Confidence 4889999999999999997 555 6899998764 445544432111111 12221 11 35789
Q ss_pred EEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-CCCCeE--EcCcHHHHHHHHHHHHh-hcCCChHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDA--ILENAETSLQLGSKLLK-GFGVMSDDV 682 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~-~Gad~V--i~p~~~~~~~la~~~l~-~l~~~~~~~ 682 (791)
.+++++..+. -..++..++. +.++..++..+.--... .|++ .+...| +.|+.-....-+-..+. .-.+.....
T Consensus 67 vVilavpp~~-~~~vl~~l~~~l~~~~~ivS~~aGi~~~-~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~ 144 (277)
T PRK06928 67 HSFICVPPLA-VLPLLKDCAPVLTPDRHVVSIAAGVSLD-DLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANK 144 (277)
T ss_pred EEEEecCHHH-HHHHHHHHHhhcCCCCEEEEECCCCCHH-HHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHH
Confidence 9999988543 3334444443 33443455544433333 4433 342233 45664332222211111 112334445
Q ss_pred HHHHHHHhcc
Q 003861 683 TFLRQLVRNS 692 (791)
Q Consensus 683 ~~l~~~~~~~ 692 (791)
+..+++++.-
T Consensus 145 ~~v~~l~~~~ 154 (277)
T PRK06928 145 SRLEETLSHF 154 (277)
T ss_pred HHHHHHHHhC
Confidence 5666666553
No 215
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=92.94 E-value=0.92 Score=48.45 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=63.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCc-EEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWP-FVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~-vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++.|+|+|++|+.+++.+. +. +.+ +.++|.++++.+.+.+ .+... + ++.+.+- .++|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~----------~~~~~~elv~v~d~~~~~a~~~a~~~~~~~-~---~~~~ell----~~~Dv 64 (265)
T PRK13304 3 KIGIVGCGAIASLITKAIL----------SGRINAELYAFYDRNLEKAENLASKTGAKA-C---LSIDELV----EDVDL 64 (265)
T ss_pred EEEEECccHHHHHHHHHHH----------cCCCCeEEEEEECCCHHHHHHHHHhcCCee-E---CCHHHHh----cCCCE
Confidence 5899999999999999987 33 344 5578999998887755 23221 2 2333332 67999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHH----HHHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLD----LKKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~----L~~~Gad~Vi~ 658 (791)
|+.+++.+. ....+..+.+.+. ++++-.. |.+..+. .++.|..-.+.
T Consensus 65 Vvi~a~~~~-~~~~~~~al~~Gk--~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 65 VVECASVNA-VEEVVPKSLENGK--DVIIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred EEEcCChHH-HHHHHHHHHHcCC--CEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 999987643 3444555555443 4444322 4333333 35557654443
No 216
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=92.94 E-value=0.95 Score=45.36 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=69.8
Q ss_pred eCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h---cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 537 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K---LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 537 ~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~---~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
||.|.++-+.+ +. .....|++||.|++.++..+ + .++.++.||+ |+.|. ++.+.|++
T Consensus 43 aGtGsi~iE~a--~~----------~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~--~~~~~dai 106 (187)
T COG2242 43 AGTGSITIEWA--LA----------GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP--DLPSPDAI 106 (187)
T ss_pred CCccHHHHHHH--Hh----------CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc--CCCCCCEE
Confidence 55567777776 43 67789999999999976654 2 3456777776 57777 56699999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHH----HHHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD----LKKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~----L~~~Gad~Vi~ 658 (791)
.+.-+...+.+. =.....+.|.-++|+.+.+.++... +++.|...++.
T Consensus 107 FIGGg~~i~~il-e~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 107 FIGGGGNIEEIL-EAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred EECCCCCHHHHH-HHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEE
Confidence 887664333332 1222334666689999888877654 46667643433
No 217
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.88 E-value=0.57 Score=52.67 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..++.|+| .|.+|..+++.|. +.|++|.++|.++. ++.+ .-+.+||.|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~----------~~G~~V~~~d~~~~-----------------~~~~----~~~~~aDlV 146 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLT----------LSGYQVRILEQDDW-----------------DRAE----DILADAGMV 146 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHH----------HCCCeEEEeCCCcc-----------------hhHH----HHHhcCCEE
Confidence 46799998 9999999999998 88999999998632 1111 124578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
|.+++.+...-.+ ..+..+.|+ .+++-..+
T Consensus 147 ilavP~~~~~~~~-~~l~~l~~~-~iv~Dv~S 176 (374)
T PRK11199 147 IVSVPIHLTEEVI-ARLPPLPED-CILVDLTS 176 (374)
T ss_pred EEeCcHHHHHHHH-HHHhCCCCC-cEEEECCC
Confidence 9998876543222 222223333 46665554
No 218
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.81 E-value=0.21 Score=53.21 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHh--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS-- 600 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~-- 600 (791)
++++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 73 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELA----------KKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQ 73 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHH
Confidence 46788875 899999999998 789999999999887655432 246778999999988764
Q ss_pred ---cCCCCCcEEEEEeC
Q 003861 601 ---AGITSPKAVMIMYT 614 (791)
Q Consensus 601 ---agi~~a~~viv~~~ 614 (791)
......|.+|-+.+
T Consensus 74 ~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 74 LVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHhcCCeeEEEECCc
Confidence 12245687777654
No 219
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.78 E-value=0.24 Score=52.07 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a---- 601 (791)
++++|.| .|.+|+.+++.|. +.|++|+++|.+++..++..+. ....+.+|.+|++.++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYA----------RQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 4678887 5899999999998 7899999999999887665432 467889999998877553
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 73 ~~~~g~id~lv~~a 86 (257)
T PRK07024 73 IAAHGLPDVVIANA 86 (257)
T ss_pred HHhCCCCCEEEECC
Confidence 123467776654
No 220
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.77 E-value=0.19 Score=49.87 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeC
Q 003861 535 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 614 (791)
Q Consensus 535 iI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~ 614 (791)
||+--|+.|..++++.. ++|++|++|-.|+.++... ++..+++.|..|++.+ .-.+...|+||.+.+
T Consensus 5 iIgAsG~~Gs~i~~EA~----------~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~ 71 (211)
T COG2910 5 IIGASGKAGSRILKEAL----------KRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFG 71 (211)
T ss_pred EEecCchhHHHHHHHHH----------hCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEecc
Confidence 55566999999999998 8999999999999987644 5889999999999998 557888999988865
Q ss_pred C
Q 003861 615 D 615 (791)
Q Consensus 615 ~ 615 (791)
.
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 4
No 221
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.74 E-value=0.27 Score=51.05 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++
T Consensus 7 k~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 7 PRALITGASSGIGKATALAFA----------KAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHH
Confidence 46788876 899999999998 899999999999887655432 2356789999999876543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246788876654
No 222
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.73 E-value=0.18 Score=55.82 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|.+.|.+++... ..+.+.. ..+ ++++ ++++|.|+
T Consensus 150 gktvgIiG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~---l~el-l~~aDiV~ 209 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAK----------GFGMRILYYSRTRKPEA-EKELGAE-----YRP---LEEL-LRESDFVS 209 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCChhh-HHHcCCE-----ecC---HHHH-HhhCCEEE
Confidence 457999999999999999998 88999999998765432 2222321 112 2222 46789898
Q ss_pred EEeCCHHHHH--HHHHHHHHhCCCCc
Q 003861 611 IMYTDKKRTI--EAVQRLRLAFPAIP 634 (791)
Q Consensus 611 v~~~~d~~n~--~~~~~ar~l~p~~~ 634 (791)
++.+..+++. .-......+.|+..
T Consensus 210 l~lP~t~~T~~~i~~~~~~~mk~ga~ 235 (333)
T PRK13243 210 LHVPLTKETYHMINEERLKLMKPTAI 235 (333)
T ss_pred EeCCCChHHhhccCHHHHhcCCCCeE
Confidence 8888755333 22344444555433
No 223
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.71 E-value=1.1 Score=51.88 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=54.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh----------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---------- 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~---------- 600 (791)
++.|+|.|.+|..++-.|. +. |++|+.+|.|+++++.+++.+.+. .+..-++.+++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA----------~~g~g~~V~gvD~~~~~v~~l~~g~~~~--~e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIA----------LKCPDIEVVVVDISVPRIDAWNSDQLPI--YEPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCeEEEEECCHHHHHHHHcCCCcc--CCCCHHHHHHHhhcCCEEEEc
Confidence 4889999999999999997 55 588999999999999998766544 24445555433
Q ss_pred ---cCCCCCcEEEEEeC
Q 003861 601 ---AGITSPKAVMIMYT 614 (791)
Q Consensus 601 ---agi~~a~~viv~~~ 614 (791)
..+++||+++++.+
T Consensus 71 ~~~~~i~~advi~I~V~ 87 (473)
T PLN02353 71 DVEKHVAEADIVFVSVN 87 (473)
T ss_pred CHHHHHhcCCEEEEEeC
Confidence 12568999999874
No 224
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.69 E-value=0.45 Score=54.35 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-c----------CChhhHHHHHhcC---CCEEE---c-c-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-D----------LNPSVVKESRKLG---FPILY---G-D- 591 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D----------~d~~~v~~~~~~~---~~~v~---G-D- 591 (791)
..+++|.|+|.+|+.+|+.|. +.|..|+++ | .|.+.+.+..+.. ..-+. | +
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~----------~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~ 301 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQ----------QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY 301 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee
Confidence 458999999999999999998 899999998 8 7888665554321 11110 0 1
Q ss_pred CCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCc
Q 003861 592 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 592 ~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.++++.+. .++|.++=+...+..|-.-+...+. .++++|+..- +++..+.|++-|+-. .|.
T Consensus 302 i~~~~i~~----~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~~--vPD 366 (445)
T PRK09414 302 LEGGSPWS----VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVLF--APG 366 (445)
T ss_pred cCCccccc----cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcEE--ECc
Confidence 12233332 3789888777766555555555543 2578888654 468888899998754 476
No 225
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.68 E-value=3.3 Score=46.43 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred HHHHHHHHHHH--HcCCChHHHHHHHHHhhccc----CCcC-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 003861 122 AVTVIVVPVFK--IARASPILGFFFAGIVLNQL----GIIR-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 194 (791)
Q Consensus 122 ~~a~l~~~l~~--rl~lP~ivg~ilaGillGp~----gli~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~ 194 (791)
.++..+..+.+ .+.+|..++-+++|+++... +..+ +.+.++.++++.+-+++..+=+.+++..+.+..-+.+.
T Consensus 231 ~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plli 310 (368)
T PF03616_consen 231 GLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLI 310 (368)
T ss_pred HHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444 36789999999999999862 3322 56789999999999999988889999999999998888
Q ss_pred HHHHHHHHHHHHHHHh
Q 003861 195 MGLTQVVLSTLAFTAF 210 (791)
Q Consensus 195 la~~~~llt~~~~~~~ 210 (791)
+-.+|++++.+....+
T Consensus 311 il~~q~i~~~~f~~fv 326 (368)
T PF03616_consen 311 ILAVQTILMVLFAYFV 326 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877654443
No 226
>PLN00016 RNA-binding protein; Provisional
Probab=92.67 E-value=0.32 Score=54.57 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCCCEEEe----C-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH-----------HHHhcCCCEEEccCC
Q 003861 530 GSEPVVIV----G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----------ESRKLGFPILYGDAS 593 (791)
Q Consensus 530 ~~~~viI~----G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~-----------~~~~~~~~~v~GD~t 593 (791)
....|+|. | .|.+|+.+++.|. +.|++|++++.+++..+ .+.+.+..++.||.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELV----------KAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPA 120 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHH----------HCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHH
Confidence 34569999 5 5999999999998 88999999998876432 233457899999998
Q ss_pred CHHHHHhcCCCCCcEEEEEeCCHH-HHHHHHHHHHHhCC
Q 003861 594 RPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFP 631 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~d~-~n~~~~~~ar~l~p 631 (791)
|.+.+. ...++|+|+-+.+.+. ....++..+++.+.
T Consensus 121 d~~~~~--~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gv 157 (378)
T PLN00016 121 DVKSKV--AGAGFDVVYDNNGKDLDEVEPVADWAKSPGL 157 (378)
T ss_pred HHHhhh--ccCCccEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 833222 2357888877655442 23334555666553
No 227
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.67 E-value=19 Score=39.75 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHHHHhhh-hhHHHHHHH
Q 003861 432 IIKTLIISAIGPRVGLTLQESVRIGLLLSQG-GEFAFVVFS 471 (791)
Q Consensus 432 l~K~l~~~~~~~~~~~~~r~~~~~g~~l~~r-G~~~lvla~ 471 (791)
+.-+...+..++.+|.+.+++..+.+.-+.| +..++.++.
T Consensus 257 ~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 257 YIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 3444555667777899999998888776665 355555554
No 228
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=92.56 E-value=0.16 Score=56.98 Aligned_cols=108 Identities=23% Similarity=0.287 Sum_probs=69.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
.+.|+|.|+.|+.+++..+ +.|++|+++|.+++... .......+.+|..|++.+++.- +.+|++ +
T Consensus 4 ~igilG~Gql~~ml~~aa~----------~lG~~v~~~d~~~~~pa--~~~ad~~~~~~~~D~~~l~~~a-~~~dvi--t 68 (372)
T PRK06019 4 TIGIIGGGQLGRMLALAAA----------PLGYKVIVLDPDPDSPA--AQVADEVIVADYDDVAALRELA-EQCDVI--T 68 (372)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCch--hHhCceEEecCCCCHHHHHHHH-hcCCEE--E
Confidence 5889999999999999998 89999999999876522 2223456778999999998763 578865 3
Q ss_pred eCCHHHHHHHHHHHHH---hCCCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 613 YTDKKRTIEAVQRLRL---AFPAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~---l~p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
.+.+..+......+.+ ..|+...+..+.|... .+.|+++|+..
T Consensus 69 ~e~e~i~~~~l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~ 115 (372)
T PRK06019 69 YEFENVPAEALDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPV 115 (372)
T ss_pred eCcCCCCHHHHHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 3322222222222222 2344344445555443 44467778764
No 229
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.54 E-value=0.46 Score=53.27 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+.+++|.|. |-+|+.+++.|. +.|++|+++|..+...........+++.+|.+|.+.+.++ ++++|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~----------~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLK----------AEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKV-TKGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHH----------hCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHH-HhCCCE
Confidence 4567999998 999999999998 7899999999754321111112356788999999888765 246787
Q ss_pred EEEEe
Q 003861 609 VMIMY 613 (791)
Q Consensus 609 viv~~ 613 (791)
|+=+.
T Consensus 89 Vih~A 93 (370)
T PLN02695 89 VFNLA 93 (370)
T ss_pred EEEcc
Confidence 66554
No 230
>PLN02650 dihydroflavonol-4-reductase
Probab=92.53 E-value=0.21 Score=55.26 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHh
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~ 600 (791)
.+++++|.|. |-+|+.+++.|. ++|++|++++.+++..+...+ ..+.++.||.+|++.+++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLL----------ERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHH----------HCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence 3557888886 999999999998 789999998887765443221 135688999999988876
Q ss_pred cCCCCCcEEEEEe
Q 003861 601 AGITSPKAVMIMY 613 (791)
Q Consensus 601 agi~~a~~viv~~ 613 (791)
+ ++++|.|+-+.
T Consensus 74 ~-~~~~d~ViH~A 85 (351)
T PLN02650 74 A-IRGCTGVFHVA 85 (351)
T ss_pred H-HhCCCEEEEeC
Confidence 4 34577776543
No 231
>PLN03139 formate dehydrogenase; Provisional
Probab=92.52 E-value=0.4 Score=53.97 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|.++...+...+.+... .+ +-++.+ +++|.|+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~----------afG~~V~~~d~~~~~~~~~~~~g~~~--~~-~l~ell-----~~sDvV~ 260 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLK----------PFNCNLLYHDRLKMDPELEKETGAKF--EE-DLDAML-----PKCDVVV 260 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHH----------HCCCEEEEECCCCcchhhHhhcCcee--cC-CHHHHH-----hhCCEEE
Confidence 457999999999999999998 88999999998754333333333221 11 222333 5689898
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCCc
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAIP 634 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~~ 634 (791)
+..+..+++.-+ ...+..+.|+..
T Consensus 261 l~lPlt~~T~~li~~~~l~~mk~ga~ 286 (386)
T PLN03139 261 INTPLTEKTRGMFNKERIAKMKKGVL 286 (386)
T ss_pred EeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence 888875444332 344445555533
No 232
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.48 E-value=0.39 Score=55.72 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-HhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+++.|+|+|..|..+++.|. +.|.+|.+.|.++....++ ++.|+.+..|+-. ++ +++++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~-----~~~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLS----------ELGCDVVVADDNETARHKLIEVTGVADISTAEA-SD-----QLDSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHH----------HCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hh-----HhcCCCEE
Confidence 457999999999999999998 8999999999877665443 4557777765322 22 23567877
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
|...+=+..|- ....+|+.+ ++++.+..
T Consensus 79 V~Spgi~~~~p-~~~~a~~~g--i~v~~~~e 106 (473)
T PRK00141 79 VTSPGWRPDSP-LLVDAQSQG--LEVIGDVE 106 (473)
T ss_pred EeCCCCCCCCH-HHHHHHHCC--CceeeHHH
Confidence 66654444443 345667654 56665443
No 233
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.47 E-value=0.15 Score=51.27 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=57.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-----EEEccCCCH------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-----ILYGDASRP------------ 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-----~v~GD~t~~------------ 595 (791)
+|.|+|.|.+|+.+|..+. ..|++|+++|.|++..++.++.-.. +-.|..+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA----------RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH----------HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcCCHHHHHHHHHHH----------hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 4789999999999999998 7899999999999986554421000 011111111
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
+-++++. +||.||=++.+|.+ =..+-..+.+.-|.-.+++...+.-....+
T Consensus 71 ~dl~~~~--~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 71 TDLEEAV--DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp SSGGGGC--TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred cCHHHHh--hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 1133333 88988888887632 223334444444333566665554444444
No 234
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=92.36 E-value=1.1 Score=50.40 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=66.0
Q ss_pred CEEEeCCChhHH-HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-EE-EccC---------------CC
Q 003861 533 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-IL-YGDA---------------SR 594 (791)
Q Consensus 533 ~viI~G~G~~G~-~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-~v-~GD~---------------t~ 594 (791)
+++++|.|.+|+ .+...|. +.|++|+.+|.+++.++.+++.|.. +. .|+. ++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~----------~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~ 71 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLA----------DNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADE 71 (381)
T ss_pred ceEEECCchhhHHHHHHHHH----------hCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCH
Confidence 589999999999 5577887 7899999999999999999887754 22 2332 11
Q ss_pred HHHHHhcCCCCCcEEEEEeCCHH-H----HHHHHHHHHHh---CCCCcEEEEecChhhHHHHHHC
Q 003861 595 PAVLLSAGITSPKAVMIMYTDKK-R----TIEAVQRLRLA---FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 595 ~~~L~~agi~~a~~viv~~~~d~-~----n~~~~~~ar~l---~p~~~iiara~~~~~~~~L~~~ 651 (791)
+++++ .+.++|.+..++.... . .+.-.+..|.. .+...|++-.|-..|.+.|++.
T Consensus 72 ~~~~~--~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 72 EAVIE--AIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHHHH--HhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 12222 2346675555554321 1 12222333332 2334566766777777777765
No 235
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.34 E-value=0.3 Score=53.43 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|.+|+.+++.|+ ..|.+|.++|..++... +.....+ .+.|++ -++++|.|+
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~----------afG~~V~~~~~~~~~~~-----~~~~~~~----~~~l~e-~l~~aDvvv 195 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQ----------TWGFPLRCWSRSRKSWP-----GVQSFAG----REELSA-FLSQTRVLI 195 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCCC-----Cceeecc----cccHHH-HHhcCCEEE
Confidence 357999999999999999998 89999999998665421 2222211 112221 236789999
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCC
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~ 633 (791)
++.+..+.|..+ ....+.+.|+.
T Consensus 196 ~~lPlt~~T~~li~~~~l~~mk~ga 220 (312)
T PRK15469 196 NLLPNTPETVGIINQQLLEQLPDGA 220 (312)
T ss_pred ECCCCCHHHHHHhHHHHHhcCCCCc
Confidence 988876554443 33445555553
No 236
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.33 E-value=1.1 Score=47.52 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=57.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc---EEEEcCChhhHHHHHhcC--CCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP---FVAFDLNPSVVKESRKLG--FPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~---vvvID~d~~~v~~~~~~~--~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|++|+.+++.|. +.|++ +.+.|.++++.+++.+.. ..+ .. +..+.. +++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~----------~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~--~~~~~~-----~~aD 63 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL----------TSPADVSEIIVSPRNAQIAARLAERFPKVRI-AK--DNQAVV-----DRSD 63 (258)
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCChheEEEECCCHHHHHHHHHHcCCceE-eC--CHHHHH-----HhCC
Confidence 4789999999999999997 55543 578889999888776642 222 11 122222 4689
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~ 649 (791)
.|++++.++ ....+...++ ..++ ++++..--....+.++
T Consensus 64 vVilav~p~-~~~~vl~~l~-~~~~-~~vis~~ag~~~~~l~ 102 (258)
T PRK06476 64 VVFLAVRPQ-IAEEVLRALR-FRPG-QTVISVIAATDRAALL 102 (258)
T ss_pred EEEEEeCHH-HHHHHHHHhc-cCCC-CEEEEECCCCCHHHHH
Confidence 999998853 2233332222 2343 3444344444444444
No 237
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.29 E-value=0.4 Score=56.00 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=35.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++.++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la----------~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA----------SAGHQVLLYDIRAEALARA 44 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 46999999999999999998 8899999999999998754
No 238
>PRK01581 speE spermidine synthase; Validated
Probab=92.25 E-value=1.5 Score=48.84 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------------cCCCEEEccCCCH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------------LGFPILYGDASRP 595 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------------~~~~~v~GD~t~~ 595 (791)
..++|+++|+|. |..+.+.|+ .....++++||.|++.++.+++ ....++.+|+.+
T Consensus 150 ~PkrVLIIGgGd-G~tlrelLk---------~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~- 218 (374)
T PRK01581 150 DPKRVLILGGGD-GLALREVLK---------YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE- 218 (374)
T ss_pred CCCEEEEECCCH-HHHHHHHHh---------cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH-
Confidence 456899999884 555555554 1223689999999999887774 245678888874
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHH----HH----HHHHHHHHhCCCCcEEEEec
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKR----TI----EAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~----n~----~~~~~ar~l~p~~~iiara~ 640 (791)
.+++. -++.|.|++-.+|+.. .+ ......+.+.|+--+++.+.
T Consensus 219 -fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 219 -FLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred -HHHhc-CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 44443 2579999888765321 11 12334455677644444433
No 239
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.13 E-value=0.42 Score=49.64 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ ....++.+|.+|++-++++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFA----------AEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46788876 889999999998 789999999999987665533 2356889999999988754
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|++|-..+
T Consensus 76 ~~~~~~~d~vi~~ag 90 (251)
T PRK07231 76 LERFGSVDILVNNAG 90 (251)
T ss_pred HHHhCCCCEEEECCC
Confidence 2246787777654
No 240
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.3 Score=51.58 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.|.|++..+++.+. ...++.+|.+|++.++++
T Consensus 7 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALV----------AAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 46778876 899999999998 8999999999998876665432 356788999999877553
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~g~id~lv~~a 88 (261)
T PRK08265 77 RFGRVDILVNLA 88 (261)
T ss_pred HhCCCCEEEECC
Confidence 123567776554
No 241
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.12 E-value=0.33 Score=53.00 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH---h-----cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~---~-----~~~~~v~GD~t~~~~L~~a 601 (791)
.+.++|.|. |-+|+.+++.|. ++|++|++++.|++..+... . ...+++.+|.+|++.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLL----------FRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH
Confidence 457888885 899999999998 88999988877765433221 1 2366889999999988765
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
+++.|.+|-+.+
T Consensus 75 -~~~~d~vih~A~ 86 (325)
T PLN02989 75 -IDGCETVFHTAS 86 (325)
T ss_pred -HcCCCEEEEeCC
Confidence 456787776653
No 242
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.11 E-value=2.2 Score=46.87 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHH----HHh----cCCC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKE----SRK----LGFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~----~~~----~~~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++..+. ..| .+++++|.|++..+- +.+ .+.. -+.+ .+|.+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~----------~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~---- 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLIL----------QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE---- 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHH----------HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH----
Confidence 458999999999999999887 455 589999999876431 111 1111 1221 13333
Q ss_pred cCCCCCcEEEEEeCCH--H---------HHH----HHHHHHHHhCCCCcEEEEecChhh--HHHHHHC-C--CCeEEcCc
Q 003861 601 AGITSPKAVMIMYTDK--K---------RTI----EAVQRLRLAFPAIPIYARAQDMMH--LLDLKKA-G--ATDAILEN 660 (791)
Q Consensus 601 agi~~a~~viv~~~~d--~---------~n~----~~~~~ar~l~p~~~iiara~~~~~--~~~L~~~-G--ad~Vi~p~ 660 (791)
.+++||.||++.+.. . .|. .++..+++.+|+.. +..+.|+.+ ...+.+. | ..+|+--.
T Consensus 70 -~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~-vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 70 -DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAF-VICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred -HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE-EEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 347889998887321 1 122 35566677788754 333455443 3334343 3 35676333
Q ss_pred -HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 -AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 -~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
..-..|+-+.+-+.+++++..++.
T Consensus 148 t~lds~R~~~~la~~l~v~~~~v~~ 172 (319)
T PTZ00117 148 GVLDSSRFRCNLAEKLGVSPGDVSA 172 (319)
T ss_pred chHHHHHHHHHHHHHhCCCcccceE
Confidence 333345666666777888866553
No 243
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.11 E-value=0.33 Score=51.20 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=57.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ...++.+|.+|++.++++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALA----------AAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 45888885 889999999998 8899999999999887666543 467889999999876543
Q ss_pred -CCCCCcEEEEEeC
Q 003861 602 -GITSPKAVMIMYT 614 (791)
Q Consensus 602 -gi~~a~~viv~~~ 614 (791)
.....|.++.+.+
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 1356788877654
No 244
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.10 E-value=0.67 Score=50.53 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=56.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-EEccCCCHHHHHh-----cCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRPAVLLS-----AGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-v~GD~t~~~~L~~-----agi~~a 606 (791)
++.|+|.|.+|.++|..|. +.|++|.+...||+.++++.+...+. +..|..-|+.++. .-++++
T Consensus 3 kI~ViGaGswGTALA~~la----------~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLA----------RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGA 72 (329)
T ss_pred eEEEEcCChHHHHHHHHHH----------hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcC
Confidence 6899999999999999998 88999999999999999987643232 2335544443321 123569
Q ss_pred cEEEEEeCCH
Q 003861 607 KAVMIMYTDK 616 (791)
Q Consensus 607 ~~viv~~~~d 616 (791)
|.+++++++.
T Consensus 73 d~iv~avPs~ 82 (329)
T COG0240 73 DIIVIAVPSQ 82 (329)
T ss_pred CEEEEECChH
Confidence 9999999875
No 245
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.07 E-value=0.29 Score=53.17 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=53.3
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH---HHHh-----cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRK-----LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~---~~~~-----~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.| .|-+|+.+++.|. ++|++|++++.|++..+ .+.. ....++.||.+|++.++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 73 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLL----------QRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV- 73 (322)
T ss_pred CEEEEECChHHHHHHHHHHHH----------HCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-
Confidence 4689998 5999999999998 88999998887765422 2211 2467899999999888765
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++++|+|+-+.
T Consensus 74 ~~~~d~Vih~A 84 (322)
T PLN02662 74 VDGCEGVFHTA 84 (322)
T ss_pred HcCCCEEEEeC
Confidence 34678776655
No 246
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.02 E-value=20 Score=38.64 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhh
Q 003861 167 WGILFLLFEMGLELSLARLKALAK 190 (791)
Q Consensus 167 lgl~~lLF~~Gleldl~~Lk~~~~ 190 (791)
..+.+++|..|+.++++++++..+
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~ 35 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLR 35 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHh
Confidence 348899999999999999998765
No 247
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.36 Score=51.48 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=56.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+. ....+.+|.+|++.++++
T Consensus 5 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAAL----------AAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CEEEEecCCChHHHHHHHHHH----------hCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 45888887 889999999998 8899999999999987766543 366789999999887653
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|++|-+.+
T Consensus 75 ~~~~~d~vv~~ag 87 (277)
T PRK06180 75 TFGPIDVLVNNAG 87 (277)
T ss_pred HhCCCCEEEECCC
Confidence 1235677765543
No 248
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.00 E-value=1.1 Score=47.09 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=57.1
Q ss_pred EEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 534 VVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 534 viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++|.| -|..|+.+++.|. +.|++|++.-.+++...... .+..+..+|.++++++..+ .+..+.++..
T Consensus 3 ilV~GatG~~G~~~~~~L~----------~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a-~~G~~~~~~i 70 (275)
T COG0702 3 ILVTGATGFVGGAVVRELL----------ARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAG-AKGVDGVLLI 70 (275)
T ss_pred EEEEecccchHHHHHHHHH----------hCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHH-hccccEEEEE
Confidence 45555 5999999999998 78999999999999999888 8999999999999999865 4555554444
Q ss_pred eC
Q 003861 613 YT 614 (791)
Q Consensus 613 ~~ 614 (791)
.+
T Consensus 71 ~~ 72 (275)
T COG0702 71 SG 72 (275)
T ss_pred ec
Confidence 44
No 249
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.98 E-value=0.34 Score=53.56 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=52.1
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCC-CHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDAS-RPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t-~~~~L~~agi~~a~~v 609 (791)
+++|.|. |-+|+.+++.|.+ +.|++|+++|.+++...... ..+++++.+|.+ +.+.++++ ++++|+|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~---------~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~V 72 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILE---------TTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVI 72 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHh---------CCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEE
Confidence 5899997 9999999999971 34799999998776654443 346889999998 66666554 4578887
Q ss_pred E
Q 003861 610 M 610 (791)
Q Consensus 610 i 610 (791)
|
T Consensus 73 i 73 (347)
T PRK11908 73 L 73 (347)
T ss_pred E
Confidence 7
No 250
>COG2985 Predicted permease [General function prediction only]
Probab=91.97 E-value=1.3 Score=50.23 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHcC-C-----ChHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHH---HHHhhh
Q 003861 120 FLAVTVIVVPVFKIAR-A-----SPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLAR---LKALAK 190 (791)
Q Consensus 120 lL~~a~l~~~l~~rl~-l-----P~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~---Lk~~~~ 190 (791)
.+++...++..+.|+| . -...|-+++|.+++.+|.--+.+.+.+ |+|++++.+.+|+|--+.. +|+.++
T Consensus 12 aLvvvl~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl 89 (544)
T COG2985 12 ALFVVLALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINTDMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGL 89 (544)
T ss_pred HHHHHHHHHhhhceeEEeccccccchhhHhHHHHHhcccccccccchhhh--hhhhhHhhhhhhheecccHhHHHHHhhh
Confidence 4445555566666766 2 234567777888888775434445544 9999999999999987754 455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCC
Q 003861 191 FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGEL 267 (791)
Q Consensus 191 ~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~ 267 (791)
+-..++++-++... ..+.+ ...+++++ .+.....+-|+.-+...-+.+..++++.+..
T Consensus 90 ~~~~~allivi~~~-~~a~~------------l~k~~~~~------~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 90 NLNAFALLIVIAAL-LLAWV------------LHKLFGID------LGLIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred HHHHHHHHHHHHHH-HHHHH------------HHhhcCCC------HHHhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 55555554432222 11211 23455532 2334555556665666666777888887754
No 251
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.93 E-value=0.76 Score=46.92 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=65.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.+.|+|.|++|..+++.+. +.|++|++--. +|+..+.+.+.-.+.+.|- +.++ -++.+|.|+.
T Consensus 3 ~~~i~GtGniG~alA~~~a----------~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~-~~~d-----A~~~aDVVvL 66 (211)
T COG2085 3 IIAIIGTGNIGSALALRLA----------KAGHEVIIGSSRGPKALAAAAAALGPLITGG-SNED-----AAALADVVVL 66 (211)
T ss_pred EEEEeccChHHHHHHHHHH----------hCCCeEEEecCCChhHHHHHHHhhccccccC-ChHH-----HHhcCCEEEE
Confidence 5789999999999999998 89999999944 4555555444323333331 1122 2367898988
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
+.+= +....+...+++...+ +|+.-+.++..
T Consensus 67 AVP~-~a~~~v~~~l~~~~~~-KIvID~tnp~~ 97 (211)
T COG2085 67 AVPF-EAIPDVLAELRDALGG-KIVIDATNPIE 97 (211)
T ss_pred eccH-HHHHhHHHHHHHHhCC-eEEEecCCCcc
Confidence 8875 5566667777776554 88888888743
No 252
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.92 E-value=1 Score=52.74 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-----------HhcCCC----------EEEc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-----------RKLGFP----------ILYG 590 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-----------~~~~~~----------~v~G 590 (791)
+++.|+|.|.+|..+|..+. ..|++|++.|.+++.+++. .+.|.- -+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la----------~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 77 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA----------QAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP 77 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 57999999999999999998 8899999999999998774 233310 0111
Q ss_pred cCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEE
Q 003861 591 DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQ-RLRLAFPAIPIYA 637 (791)
Q Consensus 591 D~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~-~ar~l~p~~~iia 637 (791)
. ++. ++ +.+||.||-+..+|.+--..+. .+.+..+.-.|++
T Consensus 78 ~-~~~---~~--~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 78 V-EAL---AD--LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred e-CCH---HH--hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 122 22 4589999999988754333322 2333332224665
No 253
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.90 E-value=0.52 Score=54.78 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC-------------HHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-------------PAV 597 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~-------------~~~ 597 (791)
..+++|+|+|+.|...++.++ ..|..|+++|.++++.+.+++.|...+.-|..+ ++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak----------~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAAN----------SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 468999999999999999998 889999999999999999998888876666422 111
Q ss_pred H------HhcCCCCCcEEEEEe---CCHHHHHHHHHHHHHhCCCCcEE
Q 003861 598 L------LSAGITSPKAVMIMY---TDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 598 L------~~agi~~a~~viv~~---~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
. -.-.++++|.+|-+. +...--+..-...+.+.|+..|+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1 111357799887766 32221233334466666664433
No 254
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.89 E-value=1.3 Score=46.33 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=61.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChh-------------------hH----HHHHh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS-------------------VV----KESRK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~-------------------~v----~~~~~--~~ 584 (791)
+.+|+|+|+|-+|..+++.|. ..|. +++++|.|.= ++ +++++ ..
T Consensus 11 ~~~VlVvG~GGvGs~va~~La----------r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALA----------RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 568999999999999999998 6777 7899997741 11 12222 12
Q ss_pred CC--EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 585 FP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 585 ~~--~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.. .+....+ ++...+.--+++|.||.++++-+.-..+...+++.+ +++|..
T Consensus 81 ~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s 133 (231)
T cd00755 81 CEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISS 133 (231)
T ss_pred cEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEE
Confidence 22 2333333 233333333468999888888776666777777765 666653
No 255
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.88 E-value=0.14 Score=50.71 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=43.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD 591 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD 591 (791)
.+.+++|.|.|+.|+..++.+. ..|.+|+++|.++++.++.+..+...+.-+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~----------~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAK----------GLGAEVVVPDERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSHHHHHHHHHTTTEESEET
T ss_pred CCeEEEEECCCHHHHHHHHHHh----------HCCCEEEeccCCHHHHHhhhcccCceEEEc
Confidence 3468999999999999999998 899999999999999988887766655554
No 256
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.84 E-value=1.1 Score=48.78 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
+.++.|+|.|.+|+.+++.|. +.|++|.+.|.+++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~----------~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLAS----------ANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHH----------HCCCEEEEEeCCCC
Confidence 346999999999999999998 88999999998764
No 257
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.83 E-value=1.9 Score=45.07 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=59.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC---Cc-EEEEcC-ChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WP-FVAFDL-NPSVVKESRK-LGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~-vvvID~-d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++.|+|+|++|+.+++.|. +.+ .+ +++.+. ++++.+.+.+ .+... .. +..+.+ ++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-----~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLL----------KTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-TT--DWKQHV-----TS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHH----------hCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-eC--ChHHHH-----hc
Confidence 46999999999999999986 443 23 566765 5777777765 34332 21 122333 57
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~ 650 (791)
+|.|+++++++.. -.++..++...++ ++++....--..+.+++
T Consensus 67 ~DiViiavp~~~~-~~v~~~l~~~~~~-~~vis~~~gi~~~~l~~ 109 (245)
T PRK07634 67 VDTIVLAMPPSAH-EELLAELSPLLSN-QLVVTVAAGIGPSYLEE 109 (245)
T ss_pred CCEEEEecCHHHH-HHHHHHHHhhccC-CEEEEECCCCCHHHHHH
Confidence 8999999997644 3333444443333 45554444444444554
No 258
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.74 E-value=0.87 Score=50.27 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|++|+.+|+.|. ..|.+|++.|.+++..... .. + .++ +++ -++++|.|++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~----------~~G~~V~~~d~~~~~~~~~----~~--~--~~~---l~e-ll~~aDiVil 204 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA----------GFGATITAYDAYPNKDLDF----LT--Y--KDS---VKE-AIKDADIISL 204 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCChhHhhhh----hh--c--cCC---HHH-HHhcCCEEEE
Confidence 36999999999999999998 8999999999988653211 00 0 112 222 2467899999
Q ss_pred EeCCHHHH--HHHHHHHHHhCCCCc
Q 003861 612 MYTDKKRT--IEAVQRLRLAFPAIP 634 (791)
Q Consensus 612 ~~~~d~~n--~~~~~~ar~l~p~~~ 634 (791)
+.+...++ +.-......+.++..
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gav 229 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAI 229 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcE
Confidence 98876543 333333344445533
No 259
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=91.72 E-value=0.66 Score=43.08 Aligned_cols=87 Identities=22% Similarity=0.172 Sum_probs=51.4
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHhcC--C-CEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRKLG--F-PILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~~~--~-~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+| .|..|+.+++.|. +..+.+++.+ +.+++.-+.+++.+ . +..+.+. +.+.++ ..++|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~---------~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~D 67 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLA---------EHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE---ELAVD 67 (122)
T ss_pred CEEEECCCChHHHHHHHHHh---------cCCCceEEEEEechhhcCcCHHHHCccccccccccc-ccCChh---hcCCC
Confidence 478999 5999999999997 2468888877 65544433443322 1 1222233 223333 25889
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPA 632 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~ 632 (791)
.++++++++...-.+....+...++
T Consensus 68 vV~~~~~~~~~~~~~~~~~~~~~~g 92 (122)
T smart00859 68 IVFLALPHGVSKEIAPLLPKAAEAG 92 (122)
T ss_pred EEEEcCCcHHHHHHHHHHHhhhcCC
Confidence 9999999874433322233444555
No 260
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.68 E-value=0.37 Score=50.71 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=56.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhc--C---
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSA--G--- 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~a--g--- 602 (791)
+++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++ +
T Consensus 3 ~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFA----------AEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5788875 789999999998 889999999999998777654 2467889999998877653 2
Q ss_pred --CCCCcEEEEEeC
Q 003861 603 --ITSPKAVMIMYT 614 (791)
Q Consensus 603 --i~~a~~viv~~~ 614 (791)
..+.|.+|-+.+
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 245687776553
No 261
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.57 E-value=0.37 Score=50.43 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhcC-
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~ag- 602 (791)
.++++|.|. |.+|+.+++.|. ++|++|++++.++++.+.+.+ ....++.+|.++++.++++-
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLA----------QAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 357788876 999999999998 789999999999988765543 24668899999998776531
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 79 HAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 235677776554
No 262
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.55 E-value=0.38 Score=49.46 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=54.3
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhc----CCCCC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA----GITSP 606 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~a----gi~~a 606 (791)
.++|.| .|.+|+.+++.|. +.|++|++++.+++..+.+.+ .+..+..+|.+|++.++++ .=.+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLL----------ERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred EEEEeCCCchHHHHHHHHHH----------hCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 577777 5899999999998 789999999999887765543 3577788999998766543 11357
Q ss_pred cEEEEEe
Q 003861 607 KAVMIMY 613 (791)
Q Consensus 607 ~~viv~~ 613 (791)
|.++...
T Consensus 73 d~vi~~a 79 (225)
T PRK08177 73 DLLFVNA 79 (225)
T ss_pred CEEEEcC
Confidence 8777654
No 263
>PLN02686 cinnamoyl-CoA reductase
Probab=91.52 E-value=0.37 Score=53.97 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCCCEEEccCCCHHHH
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAVL 598 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~~~v~GD~t~~~~L 598 (791)
.+.++|.|. |-+|+.+++.|. ++|++|+++..+++..+.+++ .+..++.+|.+|++.+
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~----------~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l 122 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLL----------RHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESL 122 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHH
Confidence 456888887 899999999998 889999887666665444332 1467889999999988
Q ss_pred HhcCCCCCcEEE
Q 003861 599 LSAGITSPKAVM 610 (791)
Q Consensus 599 ~~agi~~a~~vi 610 (791)
+++ ++++|.++
T Consensus 123 ~~~-i~~~d~V~ 133 (367)
T PLN02686 123 HEA-FDGCAGVF 133 (367)
T ss_pred HHH-HHhccEEE
Confidence 764 34455544
No 264
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.52 E-value=0.8 Score=43.43 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=60.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+++|+|+|..|..+++.|. ..|. +++++|.|.=... |..+.- -....+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~----------~~Gv~~i~lvD~d~v~~~------------nl~r~~-----~~~~~~v- 53 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA----------RSGVGKITLVDDDIVEPS------------NLNRQF-----LYTEEDV- 53 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH----------HHTTSEEEEEESSBB-GG------------GCCTCT-----TS-GGGT-
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HhCCCceeecCCcceeec------------cccccc-----ccccccc-
Confidence 347999999999999999998 6787 6889997643222 111110 1111121
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
.......+...+++.||.+++.+...+. ++...+- .+.|.||.-.
T Consensus 54 -----G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-~~~d~vi~~~ 100 (135)
T PF00899_consen 54 -----GKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELL-KDYDIVIDCV 100 (135)
T ss_dssp -----TSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHH-HTSSEEEEES
T ss_pred -----hhHHHHHHHHHHHHhcCceeeeeeecccccccccccc-cCCCEEEEec
Confidence 1234555678899999999988866554 3333333 2789888643
No 265
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.51 E-value=0.42 Score=49.99 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=54.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------C
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------g 602 (791)
.++|.|. |..|..+++.|. ++|++|++++.+++..+.+.+ .....+.+|.+|++.++++ .
T Consensus 2 ~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFI----------QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4677775 889999999998 889999999999988766543 2466789999999877653 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|...
T Consensus 72 ~~~id~vi~~a 82 (248)
T PRK10538 72 WRNIDVLVNNA 82 (248)
T ss_pred cCCCCEEEECC
Confidence 24678877554
No 266
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.45 E-value=0.62 Score=50.90 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=80.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHH-HHHhcC--C-----CEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVK-ESRKLG--F-----PILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~-~~~~~~--~-----~~v~GD~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++..|. ..| .+++++|.|+++.+ .+.+.. . ..++ .+|.+ .
T Consensus 2 kI~IIGaG~VG~~~a~~l~----------~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~~-----~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL----------LRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDYA-----D 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCHH-----H
Confidence 4889999999999999997 667 58999999998765 232211 1 1112 12332 2
Q ss_pred CCCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecC-hhhHHHHHHC-C--CCeEEcC-cHH
Q 003861 603 ITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQD-MMHLLDLKKA-G--ATDAILE-NAE 662 (791)
Q Consensus 603 i~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~-~~~~~~L~~~-G--ad~Vi~p-~~~ 662 (791)
+++||.++++.+.. ..|.. ++..+++.+|+..++...|- +.....+.+. | -++|+-- ..+
T Consensus 65 l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 65 CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchh
Confidence 68999999987641 12443 45556667777665555432 2223233333 3 2344432 233
Q ss_pred HHHHHHHHHHhhcCCChHHHHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDVTFL 685 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~~~l 685 (791)
-..|+-+.+-+.+++++..++..
T Consensus 145 Ds~R~~~~la~~~~v~~~~v~~~ 167 (308)
T cd05292 145 DTARFRYLLGEHLGVDPRSVHAY 167 (308)
T ss_pred hHHHHHHHHHHHhCCCccceece
Confidence 34556666666677777665443
No 267
>PRK07574 formate dehydrogenase; Provisional
Probab=91.44 E-value=0.67 Score=52.17 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++.|+|+|++|+.+++.|+ ..|.+|.+.|..+...+..++.+.. +- .+ ++++ ++++|.|++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~----------~fG~~V~~~dr~~~~~~~~~~~g~~--~~--~~---l~el-l~~aDvV~l 254 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLK----------PFDVKLHYTDRHRLPEEVEQELGLT--YH--VS---FDSL-VSVCDVVTI 254 (385)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCchhhHhhcCce--ec--CC---HHHH-hhcCCEEEE
Confidence 46999999999999999998 8999999999876433322333321 11 12 2222 477899988
Q ss_pred EeCCHHHH--HHHHHHHHHhCCCCcEE
Q 003861 612 MYTDKKRT--IEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 612 ~~~~d~~n--~~~~~~ar~l~p~~~ii 636 (791)
..+..+++ +.-......+.++..+|
T Consensus 255 ~lPlt~~T~~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 255 HCPLHPETEHLFDADVLSRMKRGSYLV 281 (385)
T ss_pred cCCCCHHHHHHhCHHHHhcCCCCcEEE
Confidence 88875443 33234444455554433
No 268
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=91.42 E-value=0.76 Score=56.44 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=51.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++.|+|+|.+|..+++.|. +.| .+|+++|.++++.+.+++.|... -..++. ++ -++++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~----------~~G~~~~V~~~d~~~~~~~~a~~~g~~~--~~~~~~---~~-~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALR----------ERGLAREVVAVDRRAKSLELAVSLGVID--RGEEDL---AE-AVSGADVI 67 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHH----------hcCCCCEEEEEECChhHHHHHHHCCCCC--cccCCH---HH-HhcCCCEE
Confidence 46999999999999999998 667 47999999999988887766431 011222 11 14688999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+++++.+
T Consensus 68 ilavp~~ 74 (735)
T PRK14806 68 VLAVPVL 74 (735)
T ss_pred EECCCHH
Confidence 9998865
No 269
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.39 E-value=0.42 Score=51.09 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=54.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC--
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag-- 602 (791)
++.++|.|.|.+|+.+++.|. +|++|+++|.+++..++.. +.+ ...+.+|.+|++.++++=
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-----------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~ 70 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-----------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAAT 70 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 457899999999999999994 5999999999987654432 223 456889999998776531
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
....|.+|-..+
T Consensus 71 ~~~~g~id~li~nAG 85 (275)
T PRK06940 71 AQTLGPVTGLVHTAG 85 (275)
T ss_pred HHhcCCCCEEEECCC
Confidence 235787776543
No 270
>PRK06483 dihydromonapterin reductase; Provisional
Probab=91.39 E-value=0.5 Score=48.86 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=55.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHhcCCCEEEccCCCHHHHHhc------C
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~~~~~~v~GD~t~~~~L~~a------g 602 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.+++. .+.+++.+..++.+|.+|++.++++ .
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLL----------AQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred CceEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 346788886 679999999998 889999999988754 4445556778899999998876542 1
Q ss_pred CCCCcEEEEEeC
Q 003861 603 ITSPKAVMIMYT 614 (791)
Q Consensus 603 i~~a~~viv~~~ 614 (791)
....|.+|-..+
T Consensus 72 ~~~id~lv~~ag 83 (236)
T PRK06483 72 TDGLRAIIHNAS 83 (236)
T ss_pred CCCccEEEECCc
Confidence 235676666543
No 271
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.28 E-value=5.2 Score=39.76 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=50.4
Q ss_pred HHcCCChHHHHHHHHHhhcccC----CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHH
Q 003861 132 KIARASPILGFFFAGIVLNQLG----IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLS 203 (791)
Q Consensus 132 ~rl~lP~ivg~ilaGillGp~g----li~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt 203 (791)
+.+++-...|-+++|+++|.++ ...+....+.+.++|+.++++..|++--++.+...++.-+..-..+++++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~ 94 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIIT 94 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4466667779999999999753 22355677899999999999999999887665554444333333343333
No 272
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=91.26 E-value=2 Score=45.27 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=74.0
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhH-----HHHHhc-CCCEEEccCCCHHHHHhcCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVV-----KESRKL-GFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v-----~~~~~~-~~~~v~GD~t~~~~L~~agi~ 604 (791)
+++|+|+ ||+|+.+++.+. +..+.+ +-++|..++.. .++... ...+.. ++. ...-..
T Consensus 4 ki~V~Ga~GRMG~~ii~~v~---------~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v---~~~---~~~~~~ 68 (266)
T COG0289 4 KVAVAGASGRMGRTLIRAVL---------EAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV---TDD---LLLVKA 68 (266)
T ss_pred eEEEEcCCChHHHHHHHHHh---------cCCCceEEEEEecCCccccccchhhhccccccCcee---ecc---hhhccc
Confidence 5899999 999999999997 245555 44566665421 111100 011111 111 112346
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE-EecChhhHHHHHHCC--CCeEEcCcHHHHHHHHHHHHh
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQDMMHLLDLKKAG--ATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia-ra~~~~~~~~L~~~G--ad~Vi~p~~~~~~~la~~~l~ 673 (791)
++|++ +-.+.++.....+..+.+.... .||- .--++++.+.++++. +--|+.|+...|..+-.++++
T Consensus 69 ~~DV~-IDFT~P~~~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~ 138 (266)
T COG0289 69 DADVL-IDFTTPEATLENLEFALEHGKP-LVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAE 138 (266)
T ss_pred CCCEE-EECCCchhhHHHHHHHHHcCCC-eEEECCCCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHH
Confidence 78854 5666667777777777776532 3444 334666667776653 445899998877777766654
No 273
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.25 E-value=0.43 Score=49.57 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
++++|.|. |.+|+.+++.|. ++|+++++++.+++..+...+ . ...++.+|.+|++.++++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALA----------EAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56777775 899999999998 889999999999886654432 2 356789999999877643
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|++|-+.+
T Consensus 78 ~~~~~~~id~vi~~ag 93 (250)
T PRK12939 78 AAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246888877654
No 274
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.24 E-value=0.5 Score=54.26 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh----hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++++|+|.|+.|..+++.|. +.|.+|++.|.+++ ..+++++.|..+..|+-. .+.+. +.+|
T Consensus 6 k~v~v~G~g~~G~s~a~~l~----------~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~----~~~d 70 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLH----------KLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LELLD----EDFD 70 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHHhc----CcCC
Confidence 46899999999999999998 89999999997653 235566778877766433 22332 1478
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.+|...+=+.+| .....||+.+ ++|+-+
T Consensus 71 ~vV~s~gi~~~~-~~~~~a~~~~--i~v~~~ 98 (447)
T PRK02472 71 LMVKNPGIPYTN-PMVEKALEKG--IPIITE 98 (447)
T ss_pred EEEECCCCCCCC-HHHHHHHHCC--CcEEeH
Confidence 776655333333 3456667654 566654
No 275
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=91.22 E-value=0.88 Score=40.66 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=66.3
Q ss_pred EEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEecC
Q 003861 567 FVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 567 vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
|+++|.|+...+.++ +.|+..+..=.+-.+.++...-...|.+++-..-+ .+-..++..+|+.+|++++++-..+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 578899888765554 35652333333445567777777799888876543 5667788999999999998877744
Q ss_pred --hhhHHHHHHCCCCeEEcCc
Q 003861 642 --MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 642 --~~~~~~L~~~Gad~Vi~p~ 660 (791)
........++|++..+.-.
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp 101 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKP 101 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHCCCCEEEECC
Confidence 5577788899999876544
No 276
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.22 E-value=0.46 Score=49.50 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ . ....+.+|.+|++.++++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALA----------REGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46888887 999999999998 789999999999876544432 2 345788999999876542
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-+.+
T Consensus 77 ~~~~~~~id~vi~~ag 92 (250)
T PRK07774 77 TVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1236788876554
No 277
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.22 E-value=0.45 Score=49.93 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.|++..+.+.+. ....+.+|.+|++.++++=
T Consensus 7 ~~vlItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYL----------AEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 45788875 899999999998 8899999999999887665432 3567889999998876531
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
....|++|-+.
T Consensus 77 ~~~~id~li~~a 88 (257)
T PRK07067 77 RFGGIDILFNNA 88 (257)
T ss_pred HcCCCCEEEECC
Confidence 23577776654
No 278
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.18 E-value=0.5 Score=49.53 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=55.7
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcC-----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~ag----- 602 (791)
.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ .....+.+|.+|++.++++=
T Consensus 4 ~ilItGat~~iG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFL----------AAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred EEEEECCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5777776 899999999998 789999999999887665543 34678899999999876421
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-+.+
T Consensus 74 ~~~~~d~vi~~ag 86 (257)
T PRK07074 74 ERGPVDVLVANAG 86 (257)
T ss_pred HcCCCCEEEECCC
Confidence 135788777764
No 279
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.45 Score=49.64 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=46.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHh---cCCCEEEccCCCHHHHHh
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK---LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~---~~~~~v~GD~t~~~~L~~ 600 (791)
+++|.| .|.+|+.+++.|. ++|++|++++.++ +..+.+.+ ..+.++.+|.+|++.+++
T Consensus 3 ~vlItGasggiG~~ia~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLL----------EKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred EEEEecCCchHHHHHHHHHH----------hcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 677887 4899999999998 7899999999887 44444433 246688999999988764
No 280
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.5 Score=49.55 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhc----
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~a---- 601 (791)
.++++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ....+.+|.+|++.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFA----------EAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 357777776 899999999998 8899999999998877665432 236789999999987653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|++|-..+
T Consensus 81 ~~~~~~~d~vi~~ag 95 (264)
T PRK12829 81 VERFGGLDVLVNNAG 95 (264)
T ss_pred HHHhCCCCEEEECCC
Confidence 1246888876543
No 281
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.07 E-value=0.42 Score=49.77 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a---- 601 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.+++..+...+. ....+.+|.+|++.++++
T Consensus 6 k~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFA----------REGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHH----------HCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46777776 899999999998 7899999999998876554432 257889999999887653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|+++-+.+
T Consensus 76 ~~~~~~id~vi~~ag 90 (252)
T PRK06138 76 AARWGRLDVLVNNAG 90 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246787776654
No 282
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=91.01 E-value=0.98 Score=49.71 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=45.3
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHH-hcCCCEEEccCC--------------CHHH
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESR-KLGFPILYGDAS--------------RPAV 597 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~-~~~~~~v~GD~t--------------~~~~ 597 (791)
+.|.|||++|+.+++.+.+ ..+.+++. .|.+++....+. ..++..+++... +++-
T Consensus 1 VaInG~GrIGr~varav~~---------~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~ee 71 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTK---------QDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLED 71 (333)
T ss_pred CEEECCcHHHHHHHHHHhh---------CCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHH
Confidence 4689999999999999862 34566665 477777654443 356666553221 1222
Q ss_pred HHhcCCCCCcEEEEEeCCH
Q 003861 598 LLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d 616 (791)
|- +++|.|+.+++..
T Consensus 72 Ll----~~vDiVve~Tp~~ 86 (333)
T TIGR01546 72 LL----EKVDIVVDATPGG 86 (333)
T ss_pred Hh----hcCCEEEECCCCC
Confidence 21 5689888888764
No 283
>PRK06194 hypothetical protein; Provisional
Probab=90.99 E-value=0.43 Score=51.01 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag-- 602 (791)
++++|.|. |.+|+.+++.|. ++|++|+++|.+++..++.. +.+ ..++.+|.+|++.++++-
T Consensus 7 k~vlVtGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGA----------ALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46788875 789999999998 88999999999887655443 223 455899999998877641
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
....|.++-..+
T Consensus 77 ~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 77 ALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHcCCCCEEEECCC
Confidence 134677766553
No 284
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.97 E-value=1.5 Score=40.52 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCHHHHHhcCCCCCcEEEEEeCCH---HHHHHHHHHHHHhCC-CCcEEEEecCh-hhHHHHHHCCCCeEEcCcHH
Q 003861 593 SRPAVLLSAGITSPKAVMIMYTDK---KRTIEAVQRLRLAFP-AIPIYARAQDM-MHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 593 t~~~~L~~agi~~a~~viv~~~~d---~~n~~~~~~ar~l~p-~~~iiara~~~-~~~~~L~~~Gad~Vi~p~~~ 662 (791)
+.++..+.+.-.++|.|.++..+. +....++..+|+.+| +++|++--.-. .+.+.+++.|+|.++.+..+
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~~ 112 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPATE 112 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHHH
Confidence 344566666777889877776532 344556788888888 77766633322 23468999999999988753
No 285
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.95 E-value=0.42 Score=54.58 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh----HHHHHhcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~----v~~~~~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.++|.|+|+|+.|..+++.|. +.|.+|++.|.++.. .+.+..++..+..|.-.+ ....++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~----------~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~------~~~~~~ 70 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLL----------KLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD------EDLAEF 70 (448)
T ss_pred CCEEEEEecccccHHHHHHHH----------HCCCeEEEEcCCCCccchhhhhhhccCceeecCccch------hccccC
Confidence 568999999999999999998 899999999988876 223335677777775444 245678
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l 629 (791)
|.+|..-+=..++- .+..+++.
T Consensus 71 d~vV~SPGi~~~~p-~v~~A~~~ 92 (448)
T COG0771 71 DLVVKSPGIPPTHP-LVEAAKAA 92 (448)
T ss_pred CEEEECCCCCCCCH-HHHHHHHc
Confidence 86655543222222 44455554
No 286
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=90.93 E-value=29 Score=38.37 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCh--HHH-HHHHHHhhcccCC-cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 114 GLDTLTFLAVTVIVVPVFKIARASP--ILG-FFFAGIVLNQLGI-IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~lP~--ivg-~ilaGillGp~gl-i~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
..+..+.+..+.+.++++..+++|. ..| -+++|++.+-.+. +..+ ..+...+-..+=-.+|..+..+.+....
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P---~~l~~~~q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP---RGLFKAGQVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCC---hHHHHHHHHHHHHHHhhhcCHHHHHHHH
Confidence 3455566778888899999988765 566 7778888875442 2222 5677778888888999999988876544
Q ss_pred h
Q 003861 190 K 190 (791)
Q Consensus 190 ~ 190 (791)
+
T Consensus 85 ~ 85 (352)
T COG3180 85 S 85 (352)
T ss_pred H
Confidence 3
No 287
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.92 E-value=0.58 Score=53.88 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=60.4
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHh--cCCCEEEccCCCHHHHHhcCCC
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRK--LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~--~~~~~v~GD~t~~~~L~~agi~ 604 (791)
+..+.++|+|.|..|..+|+.|. +.|++|.+.|.++. ..+++++ .|..+..|.-. ++.+ +
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~-----~ 67 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLA----------RQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELL-----V 67 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHH----------hCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHh-----c
Confidence 34678999999999999999998 89999999997654 2344555 37777766322 3333 4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
++|.||+...=+.+|- ....+|+.+ ++|+-
T Consensus 68 ~~d~vV~sp~i~~~~p-~~~~a~~~~--i~i~~ 97 (448)
T PRK03803 68 QASEIIISPGLALDTP-ALRAAAAMG--IEVIG 97 (448)
T ss_pred CCCEEEECCCCCCCCH-HHHHHHHCC--CcEEE
Confidence 5787766554334444 345566653 55654
No 288
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.88 E-value=0.46 Score=49.77 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
++++|.|. |.+|+.+++.|. ++|++|++.+.+++..+.+. +.+ ...+.+|.+|++.++++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLA----------QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CEEEEECCcchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 56888886 899999999998 78999999999988655433 222 56778999999877654
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|++|-..+
T Consensus 81 ~~~~~~~~d~li~~ag 96 (255)
T PRK07523 81 FEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1235677776654
No 289
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=90.87 E-value=30 Score=38.35 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=72.6
Q ss_pred CChHHHHHHHHhHhcCCcc-chhHHHHhhhchHhHH----HHHHHHHHccc-CChHHHHhhh-HHHHHHHHHHHHHHHHH
Q 003861 365 GFSDTLGAFLAGAILAETN-FRTQIEADIRPFRGLL----LGLFFVTTGSS-IDIELLFREW-PNVLALLAGLIIIKTLI 437 (791)
Q Consensus 365 Gls~~LgAflaGl~l~~~~-~~~~i~~~l~~~~~~f----~~lFFv~vG~~-l~l~~l~~~~-~~~l~l~l~~ll~K~l~ 437 (791)
++|+..-+.+.|.++.... ..+++++....+..|+ ....++-+|+. .|++.+.+.. +..+.+++..+++-.+.
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 6777777888888887653 3345565555554333 34444555776 7898887643 33444555566667777
Q ss_pred HHHhhhhcCC-CHHHHHHHHHHHhhhh-hHHHHHHHHHHHcCCcc
Q 003861 438 ISAIGPRVGL-TLQESVRIGLLLSQGG-EFAFVVFSLANRLGVLP 480 (791)
Q Consensus 438 ~~~~~~~~~~-~~r~~~~~g~~l~~rG-~~~lvla~~a~~~g~i~ 480 (791)
.++.++++|+ |...++..|+.++.+| .=.+.+.+.+.+.++++
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 7888888886 5555566677775554 34445555555556554
No 290
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.86 E-value=0.55 Score=49.26 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=55.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcC------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG------I 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~ag------i 603 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+...+ .+...+.+|.+|++.++++- .
T Consensus 8 ~~vlItGasggIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLA----------AEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46888888 899999999998 789999999999887665543 34468899999998765421 2
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
.+.|.+|-+.+
T Consensus 78 ~~id~vi~~ag 88 (255)
T PRK06057 78 GSVDIAFNNAG 88 (255)
T ss_pred CCCCEEEECCC
Confidence 45677766553
No 291
>PRK08643 acetoin reductase; Validated
Probab=90.86 E-value=0.5 Score=49.50 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .....+.+|.+|++.++++
T Consensus 3 k~~lItGas~giG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLV----------EDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 35677765 789999999998 889999999999877655432 2345788999999876542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-+.
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678777665
No 292
>PRK06179 short chain dehydrogenase; Provisional
Probab=90.85 E-value=0.36 Score=51.05 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=55.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--C----CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--G----IT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--g----i~ 604 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+. ..+..++.+|.+|++.++++ + ..
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLA----------RAGYRVFGTSRNPARAAP--IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCChhhccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 45777775 899999999998 889999999999876543 24678999999999887764 1 23
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
..|.+|.+.+
T Consensus 73 ~~d~li~~ag 82 (270)
T PRK06179 73 RIDVLVNNAG 82 (270)
T ss_pred CCCEEEECCC
Confidence 5787776654
No 293
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.83 E-value=0.55 Score=49.78 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-c-CCCEEEccCCCHHHHHhc------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~-~~~~v~GD~t~~~~L~~a------g 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|++.+.|++..++..+ . ...++.+|.+|++.++++ .
T Consensus 6 ~~ilVtGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 6 KVVAITGGARGIGLATARALA----------ALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 46888887 889999999998 789999999999988776543 2 377889999999876432 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
....|.+|-..
T Consensus 76 ~~~id~li~~a 86 (273)
T PRK07825 76 LGPIDVLVNNA 86 (273)
T ss_pred cCCCCEEEECC
Confidence 24567776554
No 294
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.81 E-value=0.59 Score=54.05 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+++.|+|.|..|.. +|+.|. +.|++|.+.|.++. ..+++++.|..+..|. +++.+ +++|.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~ 69 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLL----------NLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADV 69 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHH----------hCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCE
Confidence 357999999999999 799998 89999999998654 3445666787776544 44433 46887
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
||+..+=+.+|- ....||+.+ ++|+.
T Consensus 70 vv~spgi~~~~~-~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 70 VVYSSAIPDDNP-ELVAARELG--IPVVR 95 (461)
T ss_pred EEECCCCCCCCH-HHHHHHHCC--CcEEe
Confidence 766654444443 355667664 56655
No 295
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.79 E-value=1.2 Score=45.30 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhh---------------------H----HHHHh--
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSV---------------------V----KESRK-- 582 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~---------------------v----~~~~~-- 582 (791)
+.+|+|+|+|-.|.++++.|. ..|.. ++++|.|.-. + +++++
T Consensus 19 ~s~VlviG~gglGsevak~L~----------~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLV----------LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 568999999999999999998 67775 8888877211 1 11222
Q ss_pred cCC--CEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCc-EEEEe
Q 003861 583 LGF--PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIP-IYARA 639 (791)
Q Consensus 583 ~~~--~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~-iiara 639 (791)
++. ..+..+.++.+.....-++++|.||.+.++.+....+-..+++.+ ++ +.+..
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~ 146 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCAT 146 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEe
Confidence 222 233334431111112225688988888777666677777788875 45 44443
No 296
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.79 E-value=2.7 Score=46.24 Aligned_cols=137 Identities=17% Similarity=0.222 Sum_probs=81.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHH-----HHHh---cCCC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK-----ESRK---LGFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~-----~~~~---~~~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++..+. ..|. +++++|.|++..+ .... .+.. -+.+. +|.+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la----------~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-~d~~---- 70 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV----------LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-NNYE---- 70 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-CCHH----
Confidence 357999999999999999987 5664 8999999998532 1111 1222 23321 2322
Q ss_pred cCCCCCcEEEEEeCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHHHHC-CC--Ce
Q 003861 601 AGITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDLKKA-GA--TD 655 (791)
Q Consensus 601 agi~~a~~viv~~~~--------------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~--~~~L~~~-Ga--d~ 655 (791)
.+++||.||.+.+. | ..|.. ++..+++..|+. ++..+.|+.+ ...+.+. |- ++
T Consensus 71 -~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv~sNP~di~t~~~~~~sg~p~~r 148 (321)
T PTZ00082 71 -DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIVITNPLDVMVKLLQEHSGLPKNK 148 (321)
T ss_pred -HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHhcCCChhh
Confidence 35899988886522 1 23443 455666677875 4444445553 3334333 43 45
Q ss_pred EEcCc-HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 656 AILEN-AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 656 Vi~p~-~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
|+--- ..-+.++-+.+-+.+++++..++.
T Consensus 149 viGlgt~lds~R~~~~la~~l~v~~~~v~~ 178 (321)
T PTZ00082 149 VCGMAGVLDSSRLRTYIAEKLGVNPRDVHA 178 (321)
T ss_pred EEEecCcccHHHHHHHHHHHhCCCccccee
Confidence 55443 333456666677777888866544
No 297
>PRK12828 short chain dehydrogenase; Provisional
Probab=90.77 E-value=0.56 Score=48.19 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH----HHHhcCCCEEEccCCCHHHHHhc-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESRKLGFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~----~~~~~~~~~v~GD~t~~~~L~~a----- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.|++..+ +..+.+..++.+|.+|++.++++
T Consensus 8 k~vlItGatg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLA----------ARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHH----------HCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHH
Confidence 35677765 999999999998 78999999999887643 33345678889999998877643
Q ss_pred -CCCCCcEEEEEeC
Q 003861 602 -GITSPKAVMIMYT 614 (791)
Q Consensus 602 -gi~~a~~viv~~~ 614 (791)
.....|+++-..+
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 1236777766543
No 298
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=90.77 E-value=0.88 Score=48.69 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=42.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~ 587 (791)
....+=-+|.|.+|..++..|. +.|++|+|.|.+.++++++.+.|..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLi----------k~G~kVtV~dr~~~k~~~f~~~Ga~v 81 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLI----------KAGYKVTVYDRTKDKCKEFQEAGARV 81 (327)
T ss_pred ccceeeEEeeccchHHHHHHHH----------HcCCEEEEEeCcHHHHHHHHHhchhh
Confidence 3567888999999999999998 89999999999999999988776443
No 299
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.76 E-value=0.52 Score=48.79 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHh------cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~ag- 602 (791)
++++|.|. |.+|+.+++.|. +.|++++++ +.+++..+.+.+ ....++.+|.+|++.++++=
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~----------~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLA----------KEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46788876 899999999998 789999999 998887655432 12567889999999776531
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
....|++|-..+
T Consensus 76 ~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 76 QIVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 125787776543
No 300
>PRK05086 malate dehydrogenase; Provisional
Probab=90.74 E-value=2.1 Score=46.87 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH---HHHHhcC-CCEEEc-cCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRKLG-FPILYG-DASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v---~~~~~~~-~~~v~G-D~t~~~~L~~agi~~a 606 (791)
+++|+|. |++|+.++..|... ...+.+++++|.++... -++.+.+ ...+.| +.+|. .+ .++++
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~-------~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~--~~--~l~~~ 70 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQ-------LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDP--TP--ALEGA 70 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcC-------CCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCH--HH--HcCCC
Confidence 5889999 99999999877410 03567899999876531 1233322 234555 23331 12 23679
Q ss_pred cEEEEEeCCH-----------HHHH----HHHHHHHHhCCCCcEEEEecChhhHHH------H-HHCC--CCeEEcCcHH
Q 003861 607 KAVMIMYTDK-----------KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLD------L-KKAG--ATDAILENAE 662 (791)
Q Consensus 607 ~~viv~~~~d-----------~~n~----~~~~~ar~l~p~~~iiara~~~~~~~~------L-~~~G--ad~Vi~p~~~ 662 (791)
|.||++.+.. ..|. .++..+++.+|+ .++..+.||.+.-- + +..| .++|+---..
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~L 149 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTL 149 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecH
Confidence 9999988751 1232 345566777777 56777777773211 1 2223 3445554444
Q ss_pred HHHHHHHHHHhhcCCChHHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~~ 683 (791)
-..|+-+.+-+.+++++..++
T Consensus 150 ds~R~~~~ia~~l~~~~~~v~ 170 (312)
T PRK05086 150 DVIRSETFVAELKGKQPGEVE 170 (312)
T ss_pred HHHHHHHHHHHHhCCChhheE
Confidence 445666666666777776544
No 301
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.69 E-value=2 Score=42.91 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=52.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCCh------------------hhHH----HHHh--cCCC-
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVK----ESRK--LGFP- 586 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~------------------~~v~----~~~~--~~~~- 586 (791)
+|+|+|+|-+|..+++.|. ..|.. ++++|.|. .+++ ++++ ....
T Consensus 1 ~VlViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i 70 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA----------RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKI 70 (174)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEE
Confidence 5899999999999999998 78885 99999986 1121 1222 1222
Q ss_pred -EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 587 -ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 587 -~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
.+..+.+++ .+++ -++++|.||.++++.+.-..+...+.+.
T Consensus 71 ~~~~~~~~~~-~~~~-~l~~~DlVi~~~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 71 EAINIKIDEN-NLEG-LFGDCDIVVEAFDNAETKAMLAESLLGN 112 (174)
T ss_pred EEEEeecChh-hHHH-HhcCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 233333332 2222 3567888888877655444455555555
No 302
>COG0679 Predicted permeases [General function prediction only]
Probab=90.68 E-value=29 Score=37.92 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=84.1
Q ss_pred ChHHHHHHHHhHhcCCc--cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhh-hHHHHHHHHHHHHHHHHHHHHhh
Q 003861 366 FSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIG 442 (791)
Q Consensus 366 ls~~LgAflaGl~l~~~--~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~-~~~~l~l~l~~ll~K~l~~~~~~ 442 (791)
.++.+=|++.|+.+... +..+.+.+.++.+.+...|+-.+.+|+.++....... +..+......-++..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666642 4445677888888999999999999999999555443 33333333334677777777878
Q ss_pred hhcCCCHHHHHHHHH-HHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHH
Q 003861 443 PRVGLTLQESVRIGL-LLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 503 (791)
Q Consensus 443 ~~~~~~~r~~~~~g~-~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~ 503 (791)
..+|++..+...+=+ ...|.+..+.+++.. .+.-.+...+.+..+..++.+..|....
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877665521111 136666666666544 4444444455555556666666655543
No 303
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.66 E-value=4.2 Score=39.74 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHhhcccCCc------CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhh
Q 003861 136 ASPILGFFFAGIVLNQLGII------RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK 190 (791)
Q Consensus 136 lP~ivg~ilaGillGp~gli------~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~ 190 (791)
+-...|-+++|+++|.++-. -+......+.++|+.++++.+|++--.+.+...++
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~ 81 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKD 81 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33467899999999986531 13456778999999999999999998876655444
No 304
>PRK08309 short chain dehydrogenase; Provisional
Probab=90.65 E-value=0.62 Score=46.62 Aligned_cols=87 Identities=10% Similarity=-0.028 Sum_probs=58.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc--C---
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--G--- 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a--g--- 602 (791)
+++|.|...+|..+++.|. +.|++|.+.+.+++..+.+.. .....+.+|.+|++.++++ +
T Consensus 2 ~vlVtGGtG~gg~la~~L~----------~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~ 71 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLC----------EKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE 71 (177)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5788998889899999998 899999999999888766543 2345667899998776543 1
Q ss_pred -CCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 603 -ITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 603 -i~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.+..|.++.....+- .-.++..+++.+
T Consensus 72 ~~g~id~lv~~vh~~~-~~~~~~~~~~~g 99 (177)
T PRK08309 72 KNGPFDLAVAWIHSSA-KDALSVVCRELD 99 (177)
T ss_pred HcCCCeEEEEeccccc-hhhHHHHHHHHc
Confidence 134556655555442 222344455544
No 305
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.65 E-value=1 Score=49.02 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=78.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHH----hcC----CC-EEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----KLG----FP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~----~~~----~~-~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..++..+. ..|. +++++|.|+++.+... +.. .. -+.. .+|. +
T Consensus 3 ~KI~VIGaG~vG~~ia~~la----------~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~---~-- 66 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLA----------LKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY---E-- 66 (307)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH---H--
Confidence 37899999999999999997 5554 9999999998753321 111 11 1111 1222 2
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcCc-
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILEN- 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p~- 660 (791)
.+++||.+|++.+. | ..|..+ +..+++..|+..++ -+.|+.+. ..+.+ .|- .+|+---
T Consensus 67 ~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~vi-v~tNP~d~~~~~~~~~s~~~~~~viG~gt 145 (307)
T PRK06223 67 DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVI-VVTNPVDAMTYVALKESGFPKNRVIGMAG 145 (307)
T ss_pred HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCcHHHHHHHHHHHhCCCcccEEEeCC
Confidence 25899988887531 1 244443 44455566764333 34444432 23333 343 4565542
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
..-..++-+.+-+.++++++.++.
T Consensus 146 ~lds~r~~~~la~~l~v~~~~v~~ 169 (307)
T PRK06223 146 VLDSARFRTFIAEELNVSVKDVTA 169 (307)
T ss_pred CcHHHHHHHHHHHHhCcChhhCcc
Confidence 333456666666777888866554
No 306
>PLN02602 lactate dehydrogenase
Probab=90.62 E-value=2 Score=47.74 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHH----HHHhc----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVK----ESRKL----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~----~~~~~----~~~~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..++-.|. ..+ .+++++|.+++..+ ++.+. +..-+.++ +|.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~----------~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~-~dy~----- 101 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTIL----------TQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS-TDYA----- 101 (350)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC-CCHH-----
Confidence 58999999999999999886 333 37999999987642 22221 11233332 2222
Q ss_pred CCCCCcEEEEEeCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHHH---HHHCC--CCeEEcC-c
Q 003861 602 GITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLD---LKKAG--ATDAILE-N 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~----~~~~~ar~l~p~~~iiara~~~~~~~~---L~~~G--ad~Vi~p-~ 660 (791)
.+++||.||++.+. | ..|. .++..+++.+|+..++ .+.|+.+.-- .+..| .++|+-- .
T Consensus 102 ~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi-vvtNPvdv~t~~~~k~sg~p~~rviG~gt 180 (350)
T PLN02602 102 VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL-IVSNPVDVLTYVAWKLSGFPANRVIGSGT 180 (350)
T ss_pred HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCchHHHHHHHHHHhCCCHHHEEeecc
Confidence 36899988888553 2 2454 3566677778885544 4445544322 34455 4556544 2
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
.+-..|+-+.+-+.+++++..++.
T Consensus 181 ~LDs~R~r~~lA~~l~v~~~~V~~ 204 (350)
T PLN02602 181 NLDSSRFRFLIADHLDVNAQDVQA 204 (350)
T ss_pred hHHHHHHHHHHHHHhCCCccceee
Confidence 333456666666677777766544
No 307
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.61 E-value=0.55 Score=48.76 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc--
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a-- 601 (791)
.+.++|.|. |.+|+.+++.|. ++|..|+++|.++++.+... +.+ ...+..|.+|++.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLA----------QKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 347888887 999999999998 78999999999987655443 222 45688999998766431
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
.....|++|-..+
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 75 QIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 2246787776544
No 308
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.60 E-value=0.47 Score=54.27 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|.+|+.+++.|. ..|. ++++++.++++.+.+.+ .+..++ +.+.+.+ .+.++|.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~----------~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~-~l~~aDv 245 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLA----------EKGVRKITVANRTLERAEELAEEFGGEAI-----PLDELPE-ALAEADI 245 (423)
T ss_pred CCEEEEECchHHHHHHHHHHH----------HCCCCeEEEEeCCHHHHHHHHHHcCCcEe-----eHHHHHH-HhccCCE
Confidence 457999999999999999998 7786 79999999998776544 343222 2233332 3468999
Q ss_pred EEEEeCCHHH
Q 003861 609 VMIMYTDKKR 618 (791)
Q Consensus 609 viv~~~~d~~ 618 (791)
||.+|+.+..
T Consensus 246 VI~aT~s~~~ 255 (423)
T PRK00045 246 VISSTGAPHP 255 (423)
T ss_pred EEECCCCCCc
Confidence 9999887543
No 309
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.57 E-value=0.5 Score=49.12 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=53.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--C
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a--g 602 (791)
+++|.| -|.+|+.+++.|. +.|++|++++.+++..+...+ ....++.+|.+|++-++++ .
T Consensus 3 ~vlItGas~giG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 3 KILIIGATSDIARACARRYA----------AAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 577777 5999999999998 889999999999987654432 2356889999999877653 1
Q ss_pred C-CCCcEEEEEe
Q 003861 603 I-TSPKAVMIMY 613 (791)
Q Consensus 603 i-~~a~~viv~~ 613 (791)
+ ++.|.++...
T Consensus 73 ~~~~~d~vv~~a 84 (243)
T PRK07102 73 LPALPDIVLIAV 84 (243)
T ss_pred HhhcCCEEEECC
Confidence 1 2457777543
No 310
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=90.56 E-value=3.5 Score=43.96 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=61.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHH-HHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVK-ESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~-~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.++|+|++|+.++.-|. +.| .++++.|.++++.+ ...+.|... .+|.+.. ++++|
T Consensus 3 ~IgfIG~G~Mg~Ai~~gl~----------~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~----~~~ad 64 (266)
T COG0345 3 KIGFIGAGNMGEAILSGLL----------KSGALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEA----VEEAD 64 (266)
T ss_pred eEEEEccCHHHHHHHHHHH----------hcCCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHH----HhhCC
Confidence 5789999999999999998 566 68999999999987 444565552 3332222 36788
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAG 652 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~G 652 (791)
.++++..- ..-..++..++...++-.+|.-+---.-...-+..|
T Consensus 65 vv~LavKP-q~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 65 VVFLAVKP-QDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred EEEEEeCh-HhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 88888754 222233344444334433444444333333333333
No 311
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=90.55 E-value=1.3 Score=50.61 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=50.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH----------HhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL----------LSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L----------~~ag 602 (791)
++-|+|.|.+|..+|..|. + |++|+++|.|+++++.+. .|...+. +...++.. .+ .
T Consensus 8 kI~vIGlGyvGlpmA~~la----------~-~~~V~g~D~~~~~ve~l~-~G~~~~~-e~~~~~l~~~g~l~~t~~~~-~ 73 (425)
T PRK15182 8 KIAIIGLGYVGLPLAVEFG----------K-SRQVVGFDVNKKRILELK-NGVDVNL-ETTEEELREARYLKFTSEIE-K 73 (425)
T ss_pred eEEEECcCcchHHHHHHHh----------c-CCEEEEEeCCHHHHHHHH-CcCCCCC-CCCHHHHHhhCCeeEEeCHH-H
Confidence 5899999999999999996 4 699999999999999998 3432211 11111110 11 2
Q ss_pred CCCCcEEEEEeCCH
Q 003861 603 ITSPKAVMIMYTDK 616 (791)
Q Consensus 603 i~~a~~viv~~~~d 616 (791)
++++|.++++.+++
T Consensus 74 ~~~advvii~Vptp 87 (425)
T PRK15182 74 IKECNFYIITVPTP 87 (425)
T ss_pred HcCCCEEEEEcCCC
Confidence 67999999998865
No 312
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.49 E-value=3.3 Score=45.45 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHhc----CCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRKL----GFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~~----~~~~v~GD~t~~~~L~ 599 (791)
...++.|+|.|.+|..++..|. ..|. +++++|.+++..+ ++++. .-..+.+ .+.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~----------~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~~~--- 69 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV----------NQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GDYS--- 69 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CCHH---
Confidence 3458999999999999999997 5566 7999999888642 22221 1112222 2322
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HHH-HCCC--CeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DLK-KAGA--TDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~~--~L~-~~Ga--d~Vi~p 659 (791)
..++||.+|++.+. | ..|..+ +..+++.+|+..++. +.||.+.- .+. ..|. .+|+--
T Consensus 70 --~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~viv-vsNP~d~~~~~~~k~sg~p~~~viG~ 146 (315)
T PRK00066 70 --DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLV-ASNPVDILTYATWKLSGFPKERVIGS 146 (315)
T ss_pred --HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-ccCcHHHHHHHHHHHhCCCHHHEeec
Confidence 25799999887663 1 245554 455666678765444 44554332 222 2332 234322
Q ss_pred -cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 -NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 -~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..|+-+.+-+.+++++..+
T Consensus 147 gt~LDs~R~~~~la~~l~v~~~~V 170 (315)
T PRK00066 147 GTSLDSARFRYMLSEKLDVDPRSV 170 (315)
T ss_pred CchHHHHHHHHHHHHHhCCCcccE
Confidence 22223445555555666666544
No 313
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.48 E-value=0.62 Score=53.59 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHh--cCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRK--LGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~--~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.++++|+|.|..|..+++.|. +.|++|++.|.++.. .+++++ .|..+..|+..+ +.+ .++
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-~~~-----~~~ 68 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLR----------KNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-ALD-----NGF 68 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-HHH-----hCC
Confidence 347999999999999999998 899999999987653 344544 377777665432 222 568
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.||...+=+.+|- ....||+.+ ++++.+
T Consensus 69 d~vv~spgi~~~~p-~~~~a~~~~--i~v~~~ 97 (445)
T PRK04308 69 DILALSPGISERQP-DIEAFKQNG--GRVLGD 97 (445)
T ss_pred CEEEECCCCCCCCH-HHHHHHHcC--CcEEEh
Confidence 88877766555554 455566653 556543
No 314
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.44 E-value=0.54 Score=49.22 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.+.+++..++..+ . ....+.+|.+|++..+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYV----------EAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46788887 789999999998 899999999999887665543 1 345778999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 80 ~~~~~g~id~lv~~a 94 (253)
T PRK05867 80 VTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 124678777654
No 315
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=90.43 E-value=11 Score=43.28 Aligned_cols=94 Identities=24% Similarity=0.322 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++++|+|.|.-|+.+++.|.+ ..+.|++++ .+|.|++..... .|.+++ |+..| .-+.+.-.++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~~~--~gvpVl-g~~~d--l~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLAR-------NPELGYRVVGFFDDRPDARTGV--RGVPVL-GKLDD--LEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHh-------CccCCcEEEEEEeCCCcccccc--CCCCcc-CCHHH--HHHHHHhcCCCEE
Confidence 5679999999999999999962 012355554 467666543222 345543 44332 2222334668888
Q ss_pred EEEeCCHH--HHHHHHHHHHHhCCCCcEE
Q 003861 610 MIMYTDKK--RTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 610 iv~~~~d~--~n~~~~~~ar~l~p~~~ii 636 (791)
+++.++.+ .-..+...+++.+.+++++
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 88887642 2234555666665443443
No 316
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.41 E-value=0.56 Score=49.68 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++++.|++..++..+ .....+.+|.+|++.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLA----------RAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 35677877 579999999998 899999999999887655432 1356789999999876653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|...
T Consensus 79 ~~~~~g~iD~lv~na 93 (263)
T PRK08339 79 ELKNIGEPDIFFFST 93 (263)
T ss_pred HHHhhCCCcEEEECC
Confidence 123567766554
No 317
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.39 E-value=0.91 Score=49.16 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCCh---hhHHHHHh----c--CCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP---SVVKESRK----L--GFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~---~~v~~~~~----~--~~~~v~GD~t~~~~L~~ 600 (791)
.++++|+|.|..|+.++..|. +.|.. +++++.++ ++.+++.+ . ...+...|.++++.+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La----------~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCA----------LDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 357999999999999999998 78886 99999986 55544332 2 12345578777766643
Q ss_pred cCCCCCcEEEEEeC
Q 003861 601 AGITSPKAVMIMYT 614 (791)
Q Consensus 601 agi~~a~~viv~~~ 614 (791)
.++++|.+|-+|+
T Consensus 196 -~~~~~DilINaTp 208 (289)
T PRK12548 196 -EIASSDILVNATL 208 (289)
T ss_pred -hhccCCEEEEeCC
Confidence 4567898888874
No 318
>PLN02583 cinnamoyl-CoA reductase
Probab=90.37 E-value=0.87 Score=49.26 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--H-HHHHh-----cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--V-KESRK-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v-~~~~~-----~~~~~v~GD~t~~~~L~~a 601 (791)
++.++|.|. |.+|+.+++.|. ++|++|++++.+++. . +.+.+ .+..++.+|.+|++.+.++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll----------~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLL----------SRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH
Confidence 457888886 899999999998 899999998764322 1 11221 2467889999999988765
Q ss_pred CCCCCcEEEE
Q 003861 602 GITSPKAVMI 611 (791)
Q Consensus 602 gi~~a~~viv 611 (791)
+.++++++-
T Consensus 76 -l~~~d~v~~ 84 (297)
T PLN02583 76 -LKGCSGLFC 84 (297)
T ss_pred -HcCCCEEEE
Confidence 446777663
No 319
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.35 E-value=0.56 Score=50.71 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .+ ..++.+|.+|++.++++
T Consensus 41 k~vlItGasggIG~~la~~La----------~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFA----------RRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45788886 899999999998 789999999999987665532 22 45788999998866543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 111 ~~~~~g~id~li~~AG 126 (293)
T PRK05866 111 VEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2347788876653
No 320
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.35 E-value=0.52 Score=49.18 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--g 602 (791)
++++|.| -|.+|+.+++.|. ++|++|++++.+++..+.+.+ .....+.+|.+|++.++++ .
T Consensus 5 ~~vlItG~sg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALA----------KEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4788888 4999999999998 789999999999887655432 2356789999999987654 1
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
....|++|-+..
T Consensus 75 ~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHcCCCCEEEECCC
Confidence 236787776553
No 321
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.35 E-value=0.61 Score=54.49 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+++.|+|.|..|..+|+.|. +.|++|.+.|.++. ..+.+++. +..+..|+.. ++.+ +++|
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~-~~~~-----~~~d 71 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCA----------RHGARLRVADTREAPPNLAALRAELPDAEFVGGPFD-PALL-----DGVD 71 (498)
T ss_pred CEEEEEeecHhHHHHHHHHH----------HCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCc-hhHh-----cCCC
Confidence 46999999999999999998 89999999997653 33445555 4455555333 4444 3578
Q ss_pred EEEEEeCCHHHH---HHHHHHHHHhCCCCcEEEEec
Q 003861 608 AVMIMYTDKKRT---IEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 608 ~viv~~~~d~~n---~~~~~~ar~l~p~~~iiara~ 640 (791)
.||+..+=+..| ......||+.+ ++|+-+..
T Consensus 72 ~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~~~~e 105 (498)
T PRK02006 72 LVALSPGLSPLEAALAPLVAAARERG--IPVWGEIE 105 (498)
T ss_pred EEEECCCCCCcccccCHHHHHHHHCC--CcEEEHHH
Confidence 777654322233 34556667664 67775543
No 322
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.34 E-value=0.6 Score=48.82 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc------CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~------~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ....+..|.+|++.++++
T Consensus 6 k~vlItGa~~~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAA----------RAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 46777776 899999999998 8999999999999876555422 356789999999877532
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|++|-..
T Consensus 76 ~~~~~g~~d~vi~~a 90 (258)
T PRK07890 76 ALERFGRVDALVNNA 90 (258)
T ss_pred HHHHcCCccEEEECC
Confidence 234678776655
No 323
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=90.32 E-value=0.53 Score=48.85 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.||+|||.|-+|.-+++.|. +.|+ +.++||.|.=.+...-. ..++..+
T Consensus 30 ~~~V~VvGiGGVGSw~veALa----------RsGig~itlID~D~v~vTN~NR-Qi~A~~~------------------- 79 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALA----------RSGIGRITLIDMDDVCVTNTNR-QIHALLG------------------- 79 (263)
T ss_pred hCcEEEEecCchhHHHHHHHH----------HcCCCeEEEEecccccccccch-hhHhhhh-------------------
Confidence 459999999999999999998 6777 68899987543221110 0111111
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCCCCeEEcCcH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
..+. ...-......++.||+++|-+... ++++.+.|-.-+-|+||.--.
T Consensus 80 --~iGk-~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD 130 (263)
T COG1179 80 --DIGK-PKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAID 130 (263)
T ss_pred --hccc-HHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchh
Confidence 1122 222334678889999988777544 788888888889999998553
No 324
>PRK09186 flagellin modification protein A; Provisional
Probab=90.29 E-value=0.61 Score=48.70 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++.++++
T Consensus 5 k~vlItGas~giG~~~a~~l~----------~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAIL----------EAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHH
Confidence 46888886 799999999998 899999999998887654421 1234568999999877653
Q ss_pred -C----CCCCcEEEEEe
Q 003861 602 -G----ITSPKAVMIMY 613 (791)
Q Consensus 602 -g----i~~a~~viv~~ 613 (791)
. ....|.+|-+.
T Consensus 75 ~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 75 SKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHcCCccEEEECC
Confidence 1 12367777554
No 325
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.27 E-value=0.68 Score=47.92 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |..|+.+++.|. +.|++|++++.+++..++.. .. ...++.+|.++++.++++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALA----------KEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 46788875 689999999998 88999999999987654432 22 355788999999987654
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|++|.+.+
T Consensus 78 ~~~~~~~id~vi~~ag 93 (239)
T PRK07666 78 LKNELGSIDILINNAG 93 (239)
T ss_pred HHHHcCCccEEEEcCc
Confidence 1246788876653
No 326
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.25 E-value=0.66 Score=47.90 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=55.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a---- 601 (791)
++++|.|. |.+|+.+++.|. +.|++|++.+.+++..+.+.+ ...+.+.+|.+|++.++++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFAL----------KEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred cEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 46788877 779999999998 889999999999987765522 1467889999999877642
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
.....|.++...+
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 1234677776664
No 327
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=90.24 E-value=5.6 Score=41.44 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=86.5
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChh--hHHHHHhcCCCEEEccCCCH----------
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPS--VVKESRKLGFPILYGDASRP---------- 595 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~--~v~~~~~~~~~~v~GD~t~~---------- 595 (791)
+..+.++----|+.||+++-.-+ ..|+|..+| -.|.. +++..+.+|.++++.|++++
T Consensus 71 k~~kgvithSSGNHaqAlalaAk----------~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~lt 140 (323)
T KOG1251|consen 71 KRAKGVITHSSGNHAQALALAAK----------ILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLT 140 (323)
T ss_pred hhcCceEeecCCcHHHHHHHHHH----------hcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHH
Confidence 45667888899999999987765 678875443 23322 34444556666666666542
Q ss_pred -------------------------HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHH
Q 003861 596 -------------------------AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDL 648 (791)
Q Consensus 596 -------------------------~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L 648 (791)
|.|++.| .-|++++..+.----.-+++.+|.+.|+++|++... -++..+-+
T Consensus 141 ee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg--~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf 218 (323)
T KOG1251|consen 141 EETGYYLIHPYNHPSVIAGQGTIALELLEQVG--EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSF 218 (323)
T ss_pred HhcCcEEeCCCCCcceeeccchHHHHHHHhhC--ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHH
Confidence 5666655 888899998887666678899999999999999766 34445556
Q ss_pred HHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 649 KKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 649 ~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
++-++-++-.|+ -+|.-+..
T Consensus 219 ~~g~I~~l~tp~-----TIADG~r~ 238 (323)
T KOG1251|consen 219 LKGKIVHLDTPK-----TIADGVRT 238 (323)
T ss_pred hcCCeEecCCch-----hhhhhhhh
Confidence 666666643333 45555544
No 328
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.22 E-value=0.61 Score=48.74 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ . ....+.+|.+|++.++++ .
T Consensus 8 k~ilItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFA----------REGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46777776 799999999998 889999999999887554432 2 356788999999876653 1
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|++|-..
T Consensus 78 ~~~~~g~id~li~~a 92 (253)
T PRK06172 78 TIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 13557776554
No 329
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=90.21 E-value=1.1 Score=48.05 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=50.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCCh-----hhHHHHH-hcCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNP-----SVVKESR-KLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~-----~~v~~~~-~~~~~~v~GD~t~~~~L~~agi 603 (791)
+++|.|. |.+|+.+++.|. +.| ++|+++|... +..+... ..+..++.+|.+|++.++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~ 69 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYIL----------NEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-F 69 (317)
T ss_pred CEEEEcCCchHHHHHHHHHH----------HhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-H
Confidence 3677776 999999999997 555 7899888532 2222221 12567889999999988776 3
Q ss_pred C--CCcEEEEEeC
Q 003861 604 T--SPKAVMIMYT 614 (791)
Q Consensus 604 ~--~a~~viv~~~ 614 (791)
+ ++|+||-+..
T Consensus 70 ~~~~~d~vi~~a~ 82 (317)
T TIGR01181 70 TEHQPDAVVHFAA 82 (317)
T ss_pred hhcCCCEEEEccc
Confidence 3 3898877664
No 330
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.18 E-value=0.6 Score=49.20 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=54.0
Q ss_pred CCCEEEeCC-C-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----c---CCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGF-G-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----L---GFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~-G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~---~~~~v~GD~t~~~~L~~ 600 (791)
.+.++|.|. | .+|+.+++.|. ++|++|+++|.++++.++..+ . ....+.+|.+|++..++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~----------~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRAL----------EEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 457888897 5 59999999998 889999999998876554432 1 25578899999876654
Q ss_pred c------CCCCCcEEEEEeC
Q 003861 601 A------GITSPKAVMIMYT 614 (791)
Q Consensus 601 a------gi~~a~~viv~~~ 614 (791)
+ .....|.+|-+.+
T Consensus 87 ~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 87 LIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 2 1246677766654
No 331
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.11 E-value=24 Score=41.33 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=53.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+++|+|.|.-|..+++.+++ .....+|-.+|.|++.... .=.|.+|+-... =+++.++-+++ .+
T Consensus 115 ~~~r~lIiGAG~ag~~l~r~~~~--------~~~~~pV~fiDdd~~~~g~-~i~Gv~V~g~~~-i~~~v~~~~~~---~i 181 (588)
T COG1086 115 NRIRLLIIGAGSAGDLLLRALRR--------DPEYTPVAFLDDDPDLTGM-KIRGVPVLGRIE-IERVVEELGIQ---LI 181 (588)
T ss_pred CCCceEEEcCchHHHHHHHHHHh--------CCCcceEEEECCChhhcCC-EEeceeeechhH-HHHHHHHcCCc---eE
Confidence 46689999999999999999972 2336788999999976431 113666666555 67788877776 56
Q ss_pred EEEeCC
Q 003861 610 MIMYTD 615 (791)
Q Consensus 610 iv~~~~ 615 (791)
+++.++
T Consensus 182 iiAips 187 (588)
T COG1086 182 LIAIPS 187 (588)
T ss_pred EEecCC
Confidence 677666
No 332
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.05 E-value=0.65 Score=49.05 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|.+ .+|+.+++.|. ++|++|++++.+++..+.+.+ ....++.+|.+|++.++++
T Consensus 11 ~~vlItGasggIG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFA----------EAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 457777764 69999999998 889999999999887655432 1356778999999987643
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|++|-..
T Consensus 81 ~~~~~~~id~vi~~A 95 (263)
T PRK07814 81 AVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678776543
No 333
>PRK04972 putative transporter; Provisional
Probab=90.03 E-value=5.7 Score=47.13 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHH-----cCCChHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 003861 122 AVTVIVVPVFKI-----ARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 196 (791)
Q Consensus 122 ~~a~l~~~l~~r-----l~lP~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la 196 (791)
+++..++.+.-| +++-...|-+++|+++|.+|.- - -..+.++|+.+++|.+|++--++.+...++.-+...
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~-~---~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~ 93 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS-I---NTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYL 93 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC-C---ChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHH
Confidence 334444444444 5566677999999999998752 1 223468999999999999998877766555444444
Q ss_pred HHHHHHHH
Q 003861 197 LTQVVLST 204 (791)
Q Consensus 197 ~~~~llt~ 204 (791)
..+++++.
T Consensus 94 ~~~~~~~~ 101 (558)
T PRK04972 94 MLALVMVG 101 (558)
T ss_pred HHHHHHHH
Confidence 44444443
No 334
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=90.01 E-value=0.99 Score=46.66 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=56.1
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
++++|.| .|.+|+.+++.|. ++|+.|++.+.+++..+...+ ....++.+|.+|++.++++
T Consensus 7 ~~vlItGa~g~iG~~la~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLH----------AQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4677777 5899999999998 889999899998887766543 2356788999999988764
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 77 ~~~~id~vi~~ag 89 (245)
T PRK12936 77 DLEGVDILVNNAG 89 (245)
T ss_pred HcCCCCEEEECCC
Confidence 2346787776654
No 335
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.99 E-value=0.69 Score=47.97 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=54.0
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH----HHhc--CCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKL--GFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~----~~~~--~~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.| .|.+|+.+++.|. ++|+.|++++.+++..+. +++. ...++.+|.+|++.++++ +
T Consensus 7 ~~ilItGasg~iG~~l~~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLA----------ADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4677777 6999999999998 789999999999765433 3332 266789999999887764 1
Q ss_pred C----CCCcEEEEEe
Q 003861 603 I----TSPKAVMIMY 613 (791)
Q Consensus 603 i----~~a~~viv~~ 613 (791)
+ .+.|+++-+.
T Consensus 77 ~~~~~~~~d~vi~~a 91 (251)
T PRK12826 77 GVEDFGRLDILVANA 91 (251)
T ss_pred HHHHhCCCCEEEECC
Confidence 1 3678776665
No 336
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.99 E-value=0.63 Score=51.56 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=52.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh----HHHHHh-------cCCCEEEccCCCHHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRK-------LGFPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~----v~~~~~-------~~~~~v~GD~t~~~~L~ 599 (791)
++++|.|. |-.|+.+++.|. +.|++|+++|..++. .+...+ ..+..+.||.+|.+.+.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELL----------FLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHH
Confidence 46899986 999999999998 789999999975432 221111 13567899999998877
Q ss_pred hcCCCCCcEEEEEe
Q 003861 600 SAGITSPKAVMIMY 613 (791)
Q Consensus 600 ~agi~~a~~viv~~ 613 (791)
++ ++++|+||=+.
T Consensus 86 ~~-~~~~d~ViHlA 98 (348)
T PRK15181 86 KA-CKNVDYVLHQA 98 (348)
T ss_pred HH-hhCCCEEEECc
Confidence 54 34688776554
No 337
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=89.99 E-value=0.71 Score=50.67 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
++++|.|. |-+|+.+++.|. +.| .+|+++|.++...+.+.+ .+..++.+|.+|++.++++ ++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~----------~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~ 73 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLL----------ENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LR 73 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-Hh
Confidence 35777775 899999999998 554 689999988765433321 2467889999999998875 35
Q ss_pred CCcEEEEEe
Q 003861 605 SPKAVMIMY 613 (791)
Q Consensus 605 ~a~~viv~~ 613 (791)
++|.++-+.
T Consensus 74 ~iD~Vih~A 82 (324)
T TIGR03589 74 GVDYVVHAA 82 (324)
T ss_pred cCCEEEECc
Confidence 678877644
No 338
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.97 E-value=0.47 Score=50.54 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=75.1
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHH----hcCC----CEEEccCCCHHHHHh
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESR----KLGF----PILYGDASRPAVLLS 600 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~----~~~~----~~v~GD~t~~~~L~~ 600 (791)
+.|+|. |.+|..++..|. ..| .+++++|.|+++.+... +.-. .-+.. .+|. .
T Consensus 1 I~IIGagG~vG~~ia~~l~----------~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~----~ 65 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA----------DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDP----Y 65 (263)
T ss_pred CEEECCCChHHHHHHHHHH----------hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCch----H
Confidence 478999 999999999987 455 78999999997754432 2111 11121 2231 2
Q ss_pred cCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHHC---CCCeEEcCc
Q 003861 601 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKKA---GATDAILEN 660 (791)
Q Consensus 601 agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~~---Gad~Vi~p~ 660 (791)
..+++||.||.+.+. | ..|.. ++..+++.+|+..++.- .||.+.- .+++. .-.+|+---
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~-tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV-SNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHHHHHHHhCCCchhEEEee
Confidence 235789988885532 1 23443 45667777888665444 4554332 33333 334555444
Q ss_pred HHHHHHHHHHHHhhcCCChHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDD 681 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~ 681 (791)
..-..++-+.+-+.+++++..
T Consensus 145 ~ld~~r~~~~la~~l~v~~~~ 165 (263)
T cd00650 145 TLDPIRFRRILAEKLGVDPDD 165 (263)
T ss_pred cchHHHHHHHHHHHhCCCccc
Confidence 233344444455555666543
No 339
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=89.92 E-value=4 Score=44.29 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003861 139 ILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTA 209 (791)
Q Consensus 139 ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~ 209 (791)
.+--++.|+++|++.- +-.+.++.=..+++.+..|..|.++|++++.+.+...+.+++..+.++......
T Consensus 169 lilpILiGmilGNld~-~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhccch-hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4556678888887321 112222222334888899999999999999999999998888888777665443
No 340
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.84 E-value=1.1 Score=46.59 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhc--CCCEEEccCCCHHHHHhc-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~--~~~~v~GD~t~~~~L~~a----- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.++. ..+..++. ...++.+|.+|++.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLA----------EAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46888887 789999999998 88999999998763 23333332 356889999999877632
Q ss_pred -CCCCCcEEEEEe
Q 003861 602 -GITSPKAVMIMY 613 (791)
Q Consensus 602 -gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 76 ~~~~~~d~li~~a 88 (248)
T TIGR01832 76 EEFGHIDILVNNA 88 (248)
T ss_pred HHcCCCCEEEECC
Confidence 234678877654
No 341
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=89.80 E-value=0.78 Score=48.35 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++++.+++..+.+.+. ...++.+|.+|++.++++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFL----------AEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 46788887 679999999998 8899999999999887776542 356789999998876643
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~g~id~li~~a 88 (263)
T PRK06200 77 AFGKLDCFVGNA 88 (263)
T ss_pred hcCCCCEEEECC
Confidence 223567766554
No 342
>PLN00203 glutamyl-tRNA reductase
Probab=89.79 E-value=0.47 Score=55.46 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..+++|+|.|.+|+.+++.|. ..|. ++++++.++++.+.+.+. +..+..-+..+ +. ..+.++|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~----------~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~-~al~~aD 331 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLV----------SKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---ML-ACAAEAD 331 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHH----------hCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HH-HHHhcCC
Confidence 457999999999999999998 7785 699999999998887653 33332222222 22 2357899
Q ss_pred EEEEEeCCH
Q 003861 608 AVMIMYTDK 616 (791)
Q Consensus 608 ~viv~~~~d 616 (791)
.||.+|+..
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999988764
No 343
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.78 E-value=0.68 Score=48.49 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +.+ ...+.+|.+|++.++++
T Consensus 8 ~~vlItGasg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELA----------RAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 46888887 999999999998 89999999999997654443 233 45678999999987653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-+.+
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 78 VAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHcCCCCEEEECCc
Confidence 1235677766553
No 344
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=89.73 E-value=0.45 Score=53.34 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~viv 611 (791)
.+.|+|.|+.|..+++.+. +.|++|+++|.+++.... ......+.+|.+|++.+.+. .-.+.|+|+.
T Consensus 1 kililG~g~~~~~l~~aa~----------~~G~~v~~~d~~~~~~~~--~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQ----------RLGVEVIAVDRYANAPAM--QVAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCchh--hhCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 4789999999999999998 899999999999875322 12234567888998877654 3347887765
Q ss_pred EeCCHHHHHHHHHHHHHhC----CCCcEEEEecChhhHHH-H-HHCCCCe
Q 003861 612 MYTDKKRTIEAVQRLRLAF----PAIPIYARAQDMMHLLD-L-KKAGATD 655 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~----p~~~iiara~~~~~~~~-L-~~~Gad~ 655 (791)
..++ .+......+.+.+ |+...+..+.|....+. + ++.|+..
T Consensus 69 ~~e~--v~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~ 116 (380)
T TIGR01142 69 EIEA--IATDALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPT 116 (380)
T ss_pred ccCc--cCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCC
Confidence 4443 1222223333332 22223333445554444 3 6788763
No 345
>PLN00198 anthocyanidin reductase; Provisional
Probab=89.72 E-value=0.78 Score=50.44 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=52.3
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH------Hh-cCCCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES------RK-LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~------~~-~~~~~v~GD~t~~~~L~~ag 602 (791)
.+.++|.| .|-+|+.+++.|. +.|++|+++..|++..... .+ ..+.++.||.+|++.++++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 77 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLL----------QKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP- 77 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHH----------HCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-
Confidence 45688888 6899999999998 7899998777665443221 11 1367889999999887764
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++++|+|+-+.
T Consensus 78 ~~~~d~vih~A 88 (338)
T PLN00198 78 IAGCDLVFHVA 88 (338)
T ss_pred HhcCCEEEEeC
Confidence 34678877554
No 346
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.72 E-value=1.1 Score=47.23 Aligned_cols=72 Identities=11% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.++ +..+...+.....+..|.+|++.+++. ..+.|.+
T Consensus 15 k~~lITGas~gIG~ala~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~iDil 83 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFR----------AKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQ-LASLDVL 83 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHh-cCCCCEE
Confidence 46788877 679999999998 8999999999887 332222222235678999999877653 4578887
Q ss_pred EEEeC
Q 003861 610 MIMYT 614 (791)
Q Consensus 610 iv~~~ 614 (791)
|-..+
T Consensus 84 VnnAG 88 (245)
T PRK12367 84 ILNHG 88 (245)
T ss_pred EECCc
Confidence 76653
No 347
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.71 E-value=17 Score=35.46 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhCCh--HHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh---hhHHHHHHH
Q 003861 353 TVAGTSLLTQKLGFS--DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---EWPNVLALL 427 (791)
Q Consensus 353 ~~~~~~~la~~lGls--~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~---~~~~~l~l~ 427 (791)
++...+++.+.+|++ ..+|+++++.+++-....+ .+.=..+..+-+.+.=..+|.+++.+.+.+ .++..+...
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~--~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~ 83 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE--ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLST 83 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc--CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 334455567788886 6888888887776432111 001112234455555678999999887754 344444444
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHH
Q 003861 428 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSL 472 (791)
Q Consensus 428 l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~ 472 (791)
+..+..-....++..+..+.++.++++. ..|.|.-++.+...
T Consensus 84 ~~~l~~~~~~~~~l~~~~~~~~~ta~La---~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 84 VLLLALSALLAWLLARLTGVDPLTAFLA---TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCchHHHHHHHHH
Confidence 5555666666677778889999988743 47888777766544
No 348
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.70 E-value=0.53 Score=55.33 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|++.|..... +...+.+... .| + |+++ ++++|.++
T Consensus 138 gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~--~~--~---l~el-l~~aDvV~ 198 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAK----------AFGMKVLAYDPYISP-ERAEQLGVEL--VD--D---LDEL-LARADFIT 198 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEE--cC--C---HHHH-HhhCCEEE
Confidence 356999999999999999998 899999999974221 2223333321 11 1 2222 35678777
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCC
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~ 633 (791)
+..+..+++--+ ......+.|+.
T Consensus 199 l~lPlt~~T~~li~~~~l~~mk~ga 223 (525)
T TIGR01327 199 VHTPLTPETRGLIGAEELAKMKKGV 223 (525)
T ss_pred EccCCChhhccCcCHHHHhcCCCCe
Confidence 777765433322 24444444543
No 349
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=89.69 E-value=1 Score=51.13 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-h--cCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-K--LGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~--~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+.++|.|. |.+|+++++.|. ++|.+|++++.+++..+... + .+...+..|.+|++.+++. +++.|
T Consensus 179 K~VLITGASgGIG~aLA~~La----------~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~-l~~ID 247 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELH----------QQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAEL-LEKVD 247 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHH-hCCCC
Confidence 46788877 899999999998 88999999999887654332 1 2345788999999987764 45788
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
.+|...
T Consensus 248 iLInnA 253 (406)
T PRK07424 248 ILIINH 253 (406)
T ss_pred EEEECC
Confidence 877643
No 350
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.69 E-value=0.75 Score=47.86 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.| -|.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFA----------AKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVF 72 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHH
Confidence 3577777 5899999999998 789999999999987665532 1356788999999876542
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|.+|...
T Consensus 73 ~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 73 AEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 234678777765
No 351
>PRK06196 oxidoreductase; Provisional
Probab=89.66 E-value=0.72 Score=50.28 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=56.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a------g 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+...+ .+..++.+|.+|++.++++ .
T Consensus 27 k~vlITGasggIG~~~a~~L~----------~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALA----------QAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 46788887 789999999998 889999999999987765543 2478899999999877653 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 24678777654
No 352
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.62 E-value=1.6 Score=49.08 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=59.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC-------------------hhhHHHH----Hh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN-------------------PSVVKES----RK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d-------------------~~~v~~~----~~--~~ 584 (791)
+.+|+|+|+|..|..+++.|. ..|. +++++|.| ..+++.+ ++ ..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La----------~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 204 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLA----------AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD 204 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence 558999999999999999998 7787 69999998 2333332 22 22
Q ss_pred CCE--EEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 FPI--LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 ~~~--v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
..+ +....++. .+.+. ++++|.||.++++.+.-..+...+++.+
T Consensus 205 v~v~~~~~~~~~~-~~~~~-~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ 250 (376)
T PRK08762 205 VQVEAVQERVTSD-NVEAL-LQDVDVVVDGADNFPTRYLLNDACVKLG 250 (376)
T ss_pred CEEEEEeccCChH-HHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 332 23333332 22222 4679999888888776666777777775
No 353
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.58 E-value=0.71 Score=48.57 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=53.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+. .. ...++.+|.+|++.++++
T Consensus 3 ~vlVtGasg~iG~~la~~l~----------~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLA----------RAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred EEEEecCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5788887 899999999998 88999999999987655442 22 355788999999877653
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|++|-+.
T Consensus 73 ~~~~~~id~vi~~a 86 (263)
T PRK06181 73 VARFGGIDILVNNA 86 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 123678777664
No 354
>PLN02214 cinnamoyl-CoA reductase
Probab=89.56 E-value=0.8 Score=50.65 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH-----HHHh--cCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----ESRK--LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~-----~~~~--~~~~~v~GD~t~~~~L~~agi 603 (791)
++++|.|. |-+|+.+++.|. ++|++|++++.+++... .+.. ..+.++.+|.+|++.++++ +
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~ 79 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILL----------ERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA-I 79 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-H
Confidence 46899998 999999999998 88999999988766422 1111 1356788999999988764 3
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
+.+|+|+-+..
T Consensus 80 ~~~d~Vih~A~ 90 (342)
T PLN02214 80 DGCDGVFHTAS 90 (342)
T ss_pred hcCCEEEEecC
Confidence 46788777653
No 355
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=89.50 E-value=0.79 Score=48.32 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+++.+. ....+.+|.+|++..+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFV----------AEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 46777776 679999999998 8999999999999887776543 255788999998765442
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-+.
T Consensus 76 ~~g~id~li~~A 87 (262)
T TIGR03325 76 AFGKIDCLIPNA 87 (262)
T ss_pred HhCCCCEEEECC
Confidence 124567766654
No 356
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.49 E-value=0.96 Score=52.24 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|+.|+.+++.|. + |.+|++.|.+++....+.+.....+.|+-. .+.+ .++|.||
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~----------~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~d~vV 68 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ----------N-KYDVIVYDDLKANRDIFEELYSKNAIAALS-DSRW-----QNLDKIV 68 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh----------C-CCEEEEECCCCCchHHHHhhhcCceeccCC-hhHh-----hCCCEEE
Confidence 457999999999999999996 5 999999996655433332211122244322 2222 4678776
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
...+=+.+| .....+|+.+ ++|+-
T Consensus 69 ~SPgI~~~~-p~~~~a~~~g--i~v~~ 92 (454)
T PRK01368 69 LSPGIPLTH-EIVKIAKNFN--IPITS 92 (454)
T ss_pred ECCCCCCCC-HHHHHHHHCC--Cceec
Confidence 655434444 3456666654 56654
No 357
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.48 E-value=0.81 Score=53.07 Aligned_cols=87 Identities=13% Similarity=-0.019 Sum_probs=57.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh----hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++++|+|+|+.|+..++.|. +.|.+|++.|.++. ..+++++ +...+.|+-. ++.+ .++|
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~----------~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~-~~~~-----~~~d 71 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALR----------AHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS-AQRL-----AAFD 71 (468)
T ss_pred CEEEEEccchhhHHHHHHHH----------HcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC-hHHc-----cCCC
Confidence 46999999999999999998 89999999997543 1223444 4445555333 3333 5688
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.||...+=+.+|- ....+|+.+ ++|+.+
T Consensus 72 ~vV~SpgI~~~~p-~~~~a~~~~--i~i~~~ 99 (468)
T PRK04690 72 VVVKSPGISPYRP-EALAAAARG--TPFIGG 99 (468)
T ss_pred EEEECCCCCCCCH-HHHHHHHcC--CcEEEH
Confidence 7766554333333 456667664 667653
No 358
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=89.48 E-value=1.5 Score=40.27 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=61.2
Q ss_pred HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe-CC--HHHHHH
Q 003861 545 VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY-TD--KKRTIE 621 (791)
Q Consensus 545 ~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~-~~--d~~n~~ 621 (791)
.++..|+ +.|++|..+|.+.+. ++..+.+.-.++|.|.+.. .. .+....
T Consensus 19 ~la~~l~----------~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~ 70 (121)
T PF02310_consen 19 YLAAYLR----------KAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKR 70 (121)
T ss_dssp HHHHHHH----------HTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHH
T ss_pred HHHHHHH----------HCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHH
Confidence 4566676 679999988877643 4444545556888777765 22 245566
Q ss_pred HHHHHHHhCCCCcEEEEecC--hhhHHHHHH-CCCCeEEcCcHH
Q 003861 622 AVQRLRLAFPAIPIYARAQD--MMHLLDLKK-AGATDAILENAE 662 (791)
Q Consensus 622 ~~~~ar~l~p~~~iiara~~--~~~~~~L~~-~Gad~Vi~p~~~ 662 (791)
++..+|+.+|++++++-=.. ....+.+++ .|+|.|+..+-+
T Consensus 71 l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE 114 (121)
T PF02310_consen 71 LARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRGEGE 114 (121)
T ss_dssp HHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTS
T ss_pred HHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCCChH
Confidence 77788999999998876554 445555666 899999887643
No 359
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.46 E-value=2.8 Score=40.22 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=59.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH----HHh----cCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~----~~~----~~~~~v~GD~t~~~~L~~agi 603 (791)
++.|+|. |.+|+.++..|.. .....+++++|.+++..+- +++ ...+..... .+.+. +
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~--------~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~-----~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ--------QGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEA-----L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGG-----G
T ss_pred EEEEECCCChHHHHHHHHHHh--------CCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccc-----c
Confidence 6899999 9999999999872 1345579999999876432 222 122333333 44443 4
Q ss_pred CCCcEEEEEeCCH-----------HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 604 TSPKAVMIMYTDK-----------KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 604 ~~a~~viv~~~~d-----------~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
++||.+|++.+.. +.|..+ +..+++.+|+.. +..+.||-+
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~-vivvtNPvd 122 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAI-VIVVTNPVD 122 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSE-EEE-SSSHH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccE-EEEeCCcHH
Confidence 6899888777541 345443 445566677754 444455544
No 360
>PRK12320 hypothetical protein; Provisional
Probab=89.41 E-value=1.1 Score=54.07 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=52.6
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.| .|.+|+.+++.|. +.|++|+++|.++... ...++.++.+|.+|+. ++++ +.++|.|+-
T Consensus 2 kILVTGAaGFIGs~La~~Ll----------~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIH 66 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLI----------AAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIH 66 (699)
T ss_pred EEEEECCCCHHHHHHHHHHH----------hCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEE
Confidence 478888 6999999999998 8899999999876542 2346789999999986 4443 456888877
Q ss_pred EeC
Q 003861 612 MYT 614 (791)
Q Consensus 612 ~~~ 614 (791)
+..
T Consensus 67 LAa 69 (699)
T PRK12320 67 LAP 69 (699)
T ss_pred cCc
Confidence 764
No 361
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.40 E-value=0.68 Score=51.08 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=50.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHH-------hcCCCEEEccCCCHHHHH
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR-------KLGFPILYGDASRPAVLL 599 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~-------~~~~~~v~GD~t~~~~L~ 599 (791)
.++|.|. |-+|+.+++.|. +.|++|+++|.+++ ..+.+. +.+..++.||.+|++.++
T Consensus 2 ~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~ 71 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLL----------EKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLR 71 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHH----------HCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHH
Confidence 5778886 899999999998 78999999998753 222221 134788999999998876
Q ss_pred hcCC-CCCcEEEEEe
Q 003861 600 SAGI-TSPKAVMIMY 613 (791)
Q Consensus 600 ~agi-~~a~~viv~~ 613 (791)
++=- .++|.|+=+.
T Consensus 72 ~~~~~~~~d~ViH~A 86 (343)
T TIGR01472 72 RIIDEIKPTEIYNLA 86 (343)
T ss_pred HHHHhCCCCEEEECC
Confidence 6421 1467665443
No 362
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.36 E-value=0.64 Score=53.08 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|.+|+.+++.|. ..| .++++++.++++.+.+.+ .+...+.. +.+.+ .+.++|.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~----------~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~-----~~l~~-~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLL----------RKGVGKILIANRTYERAEDLAKELGGEAVKF-----EDLEE-YLAEADI 243 (417)
T ss_pred CCEEEEECChHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHcCCeEeeH-----HHHHH-HHhhCCE
Confidence 457999999999999999998 678 789999999998765543 34333321 22322 2458999
Q ss_pred EEEEeCCHH
Q 003861 609 VMIMYTDKK 617 (791)
Q Consensus 609 viv~~~~d~ 617 (791)
|+.+|++.+
T Consensus 244 Vi~aT~s~~ 252 (417)
T TIGR01035 244 VISSTGAPH 252 (417)
T ss_pred EEECCCCCC
Confidence 999987654
No 363
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=89.32 E-value=0.75 Score=50.64 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=75.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
.+-|+|.|+.|+-++..=. ..|++|.+.|.+++.-. ..-.-..+.++.+|++.++++ ++.+|++ +
T Consensus 3 tvgIlGGGQLgrMm~~aa~----------~lG~~v~vLdp~~~~PA--~~va~~~i~~~~dD~~al~el-a~~~DVi--T 67 (375)
T COG0026 3 TVGILGGGQLGRMMALAAA----------RLGIKVIVLDPDADAPA--AQVADRVIVAAYDDPEALREL-AAKCDVI--T 67 (375)
T ss_pred eEEEEcCcHHHHHHHHHHH----------hcCCEEEEecCCCCCch--hhcccceeecCCCCHHHHHHH-HhhCCEE--E
Confidence 5789999999999999887 89999999999988632 222345777888899999986 4778855 6
Q ss_pred eCCHHHHHHHHHHH---HHhCCCCcEEEEecChhhH-HHHHHCCCCe
Q 003861 613 YTDKKRTIEAVQRL---RLAFPAIPIYARAQDMMHL-LDLKKAGATD 655 (791)
Q Consensus 613 ~~~d~~n~~~~~~a---r~l~p~~~iiara~~~~~~-~~L~~~Gad~ 655 (791)
++-+..+......+ -...|+...+....|+-.+ +.|+++|+..
T Consensus 68 ~EfE~V~~~aL~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~v 114 (375)
T COG0026 68 YEFENVPAEALEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLPV 114 (375)
T ss_pred EeeccCCHHHHHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCCC
Confidence 55543333333333 3456776666666665544 4578888763
No 364
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.28 E-value=0.81 Score=48.04 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|..+++.|. ++|++|++++.+++..+...+ . ....+.+|.+|++.++++
T Consensus 13 k~ilItGa~g~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALG----------EAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46888875 899999999998 889999999999887655442 2 245789999999888542
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-+.+
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1235787776654
No 365
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.27 E-value=0.98 Score=50.23 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=55.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS------------ 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~------------ 600 (791)
++.|+|.|-+|...+-.|. +.|++|+.+|.|+++++.+.+...+.+ ++-=++.|++
T Consensus 2 kI~viGtGYVGLv~g~~lA----------~~GHeVv~vDid~~KV~~ln~g~~PI~--EpgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 2 KITVIGTGYVGLVTGACLA----------ELGHEVVCVDIDESKVELLNKGISPIY--EPGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred ceEEECCchHHHHHHHHHH----------HcCCeEEEEeCCHHHHHHHhCCCCCCc--CccHHHHHHhccccCcEEEEcC
Confidence 4789999999999999998 899999999999999999886554444 2333444442
Q ss_pred --cCCCCCcEEEEEeCC
Q 003861 601 --AGITSPKAVMIMYTD 615 (791)
Q Consensus 601 --agi~~a~~viv~~~~ 615 (791)
..++++|.++++++.
T Consensus 70 ~~~a~~~adv~fIavgT 86 (414)
T COG1004 70 YEEAVKDADVVFIAVGT 86 (414)
T ss_pred HHHHHhcCCEEEEEcCC
Confidence 246689988888765
No 366
>PRK05875 short chain dehydrogenase; Provisional
Probab=89.26 E-value=0.78 Score=48.65 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a 601 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++-++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLV----------AAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARA 76 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHH
Confidence 357899986 899999999998 889999999999877554332 1356778999999866543
Q ss_pred ------CCCCCcEEEEEeC
Q 003861 602 ------GITSPKAVMIMYT 614 (791)
Q Consensus 602 ------gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 77 ~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 77 VDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1236787776543
No 367
>PLN02477 glutamate dehydrogenase
Probab=89.26 E-value=1.1 Score=50.69 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=69.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCC----------hhhHHHHHhcCCCEE--Ec--cCCCH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLN----------PSVVKESRKLGFPIL--YG--DASRP 595 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d----------~~~v~~~~~~~~~~v--~G--D~t~~ 595 (791)
..+++|.|+|.+|+.+++.|. +.|..|+ |-|.+ .+.+.+..+..-.+. .+ ..+++
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~----------e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~ 275 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIH----------EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPD 275 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCc
Confidence 347999999999999999998 8899999 66876 655544332211110 01 12334
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCc
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.|. .++|.++=+.-....| ..++.++ ++++|+..- +++..+.|++-|+-. .|.
T Consensus 276 e~l~----~~~DvliP~Al~~~I~---~~na~~i--~ak~I~egAN~p~t~ea~~~L~~rGI~~--~PD 333 (410)
T PLN02477 276 DILV----EPCDVLIPAALGGVIN---KENAADV--KAKFIVEAANHPTDPEADEILRKKGVVV--LPD 333 (410)
T ss_pred ccee----ccccEEeeccccccCC---HhHHHHc--CCcEEEeCCCCCCCHHHHHHHHHCCcEE--ECh
Confidence 4443 3889776665443333 2344444 478888654 467888999998754 466
No 368
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=89.25 E-value=0.33 Score=44.65 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc--------CCCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD--------ASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD--------~t~~~~L~~agi 603 (791)
++++|+|-|..+..+++.++ +.|++++++..|++....-.+...+++.-. .+-+++++-+.-
T Consensus 3 kkvLIanrGeia~r~~ra~r----------~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALR----------ELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHH----------HTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------HhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhh
Confidence 57999999999999999999 899999999999998654443333333322 233445555555
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
+.++++.-..+--.+|...+....+.
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~~ 98 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACEDA 98 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHHT
T ss_pred hcCcccccccchhHHHHHHHHHHHHC
Confidence 56676655555556666666555543
No 369
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.21 E-value=1.2 Score=46.91 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. +.|.+|++++.+++..+++.+ .....+..|.+|++-++++
T Consensus 8 k~vlItG~~~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFA----------AEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46777787 689999999998 789999999999887665432 1256788999998876553
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 78 ~~g~id~lv~~ag 90 (259)
T PRK06125 78 EAGDIDILVNNAG 90 (259)
T ss_pred HhCCCCEEEECCC
Confidence 2356787776543
No 370
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.21 E-value=3.1 Score=42.14 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=56.2
Q ss_pred CCCCEEEeCCCh--hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC----CCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQ--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG----FPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~--~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~----~~~v~GD~t~~~~L~ 599 (791)
..+.++-+|+|. ++..+++.+ ..+.+|+.+|.+++.++.+++ .+ ..++.+|..+ .+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~-----------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~--~l~ 106 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV-----------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE--ILF 106 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh-----------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh--hHh
Confidence 345788888865 444554544 345689999999998876542 23 4567788753 343
Q ss_pred hcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 600 SAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+. -+.+|.+++..+.++.--.+-...+.+.|+-.++...
T Consensus 107 ~~-~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 107 TI-NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred hc-CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 1478988775433222122233345566765655433
No 371
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=89.21 E-value=0.84 Score=47.41 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++.+ ....++.+|.+|++.++++
T Consensus 4 ~~ilItGas~~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFA----------EEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45777774 889999999998 889999999999887665432 2367789999999887764
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|.+.+
T Consensus 74 ~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 74 AEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246787777764
No 372
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.20 E-value=0.72 Score=50.75 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=54.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+-|+|+|++|+.+++.++ ..|.+|++.|. .++... +..-+++-.+=+++| +++|.+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~----------afgm~v~~~d~~~~~~~~-----~~~~~~~~~~Ld~lL-----~~sDiv 201 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLK----------AFGMKVIGYDPYSPRERA-----GVDGVVGVDSLDELL-----AEADIL 201 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCeEEEECCCCchhhh-----ccccceecccHHHHH-----hhCCEE
Confidence 457999999999999999998 89999999998 333322 222333333344555 456766
Q ss_pred EEEeCC--HHHHHHHHHHHHHhCCCC
Q 003861 610 MIMYTD--KKRTIEAVQRLRLAFPAI 633 (791)
Q Consensus 610 iv~~~~--d~~n~~~~~~ar~l~p~~ 633 (791)
++.++- +..++.-......+-|++
T Consensus 202 ~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 202 TLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred EEcCCCCcchhcccCHHHHhhCCCCe
Confidence 666544 345555566666665554
No 373
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.05 E-value=6.8 Score=42.17 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=58.4
Q ss_pred CCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++. ++|-|. +-.|+.+|.++. +.|..+++.|.|++-.++-.+ ..++.| +|++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa----------~rg~~~vl~Din~~~~~etv~--------------~~~~~g--~~~~ 90 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFA----------KRGAKLVLWDINKQGNEETVK--------------EIRKIG--EAKA 90 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHH----------HhCCeEEEEeccccchHHHHH--------------HHHhcC--ceeE
Confidence 444 555565 469999999998 899999999999886553322 122223 7777
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
-.+-.+++++=...+...|+...++.|++
T Consensus 91 y~cdis~~eei~~~a~~Vk~e~G~V~ILV 119 (300)
T KOG1201|consen 91 YTCDISDREEIYRLAKKVKKEVGDVDILV 119 (300)
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 77778887777777888888877777666
No 374
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.01 E-value=2.1 Score=47.19 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=54.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHH--HHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAV--LLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~--L~~agi~~a~ 607 (791)
.++++|.|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+. |..+++. +.+.. ..+|
T Consensus 170 g~~VlV~G~G~vG~~aiqlak----------~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~-g~~D 237 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVK----------TLGAAEIVCADVSPRSLSLAREMGADKLV-NPQNDDLDHYKAEK-GYFD 237 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCcccHHHHhccC-CCCC
Confidence 357999999999999999887 7887 588999999999999998876543 3333222 11111 2489
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++...
T Consensus 238 ~vid~~G~~~ 247 (343)
T PRK09880 238 VSFEVSGHPS 247 (343)
T ss_pred EEEECCCCHH
Confidence 8888887643
No 375
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=89.00 E-value=18 Score=41.42 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhHhcCCc---cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHH
Q 003861 354 VAGTSLLTQKLGFSDTLGAFLAGAILAET---NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGL 430 (791)
Q Consensus 354 ~~~~~~la~~lGls~~LgAflaGl~l~~~---~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ 430 (791)
......+.+.+..+...-..+.|++.+.. .......-.-+.+..++.|.--..-|.++|...+.++|..+..+....
T Consensus 18 ~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~ 97 (429)
T COG0025 18 GLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPL 97 (429)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHH
Confidence 33444455555555555555555444421 111111111112236777777778899999999988888877777767
Q ss_pred HHHHHHHHHHhhhhc--CCCHHHHHHHHHHHhhhhhHHHH
Q 003861 431 IIIKTLIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFV 468 (791)
Q Consensus 431 ll~K~l~~~~~~~~~--~~~~r~~~~~g~~l~~rG~~~lv 468 (791)
++...+++....++. ++++..++..|..++|-.-+++.
T Consensus 98 v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 98 VLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 766666666555554 78888999999888777655443
No 376
>PRK05717 oxidoreductase; Validated
Probab=88.98 E-value=0.87 Score=47.74 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++-++++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLI----------AEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 45788876 899999999998 789999999998876555432 2356789999998766432
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 81 ~~g~id~li~~a 92 (255)
T PRK05717 81 QFGRLDALVCNA 92 (255)
T ss_pred HhCCCCEEEECC
Confidence 123577776544
No 377
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=88.96 E-value=0.9 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.035 Sum_probs=53.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc-----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a----- 601 (791)
+++|.|. +.+|+.+++.|. ++|++|++++.+++..++..+ .....+.+|.+|++..+++
T Consensus 2 ~vlItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELL----------KKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 4677776 779999999998 889999999999887655432 2466789999998876643
Q ss_pred -CCCCCcEEEEEe
Q 003861 602 -GITSPKAVMIMY 613 (791)
Q Consensus 602 -gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 72 ~~~g~id~li~na 84 (259)
T PRK08340 72 ELLGGIDALVWNA 84 (259)
T ss_pred HhcCCCCEEEECC
Confidence 234677776544
No 378
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.95 E-value=1 Score=42.23 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=55.7
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChh-hH----HHHH---hcCCCEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPS-VV----KESR---KLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~-~v----~~~~---~~~~~~v~GD~t~~~~L~~ag 602 (791)
+|+|+|+ ||+|+.+++.+.+ +.+.+ +-++|.+++ .+ .++. ..+.++. +| ++++-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~---------~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~---l~~~~ 65 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILE---------SPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DD---LEELL 65 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------STTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S----HHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHh---------cCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hh---HHHhc
Confidence 5899999 9999999999982 57887 456677762 11 1111 1222222 22 22221
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHCCCC
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKAGAT 654 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara--~~~~~~~~L~~~Gad 654 (791)
+++|++|=.+ ..+........+.+.+ +++|.-. -+++..+.++++...
T Consensus 66 -~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 66 -EEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp -TH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred -ccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHHhcc
Confidence 2288665555 5555555566666653 4544433 345666777775433
No 379
>PLN02253 xanthoxin dehydrogenase
Probab=88.95 E-value=0.83 Score=48.61 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcC---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAG--- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~ag--- 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|+++|.+++..++..+ .....+.+|.+|++.++++=
T Consensus 19 k~~lItGas~gIG~~la~~l~----------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFH----------KHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 35777775 789999999998 899999999998876554432 23668899999998876531
Q ss_pred ---CCCCcEEEEEe
Q 003861 603 ---ITSPKAVMIMY 613 (791)
Q Consensus 603 ---i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 23577776544
No 380
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=88.95 E-value=1.2 Score=46.49 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=53.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----HhcC--CCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKLG--FPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~~~--~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |.+|+.+++.|. +.|.+|++++.+++..++. ++.+ ...+.+|.+|++.++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLA----------KDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5778875 899999999998 8899999999988765443 2223 56788999999977653
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
.....|.+|-+.
T Consensus 72 ~~~~~~id~vi~~a 85 (254)
T TIGR02415 72 AEKFGGFDVMVNNA 85 (254)
T ss_pred HHHcCCCCEEEECC
Confidence 223567776655
No 381
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.94 E-value=0.7 Score=55.90 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=55.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---------------------HHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---------------------v~~~~~~~~~~v 588 (791)
..++++|+|.|..|...|..|. +.|++|+++|.+++. ++.+++.|.++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La----------~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~ 261 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLL----------RKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFR 261 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3568999999999999999998 889999999987542 455667787777
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~d 616 (791)
.+.....+ .+++.. .++|+++++++..
T Consensus 262 ~~~~v~~dv~~~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 262 FNTVFGRDITLEELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred eCCcccCccCHHHHH-hhcCEEEEEcCCC
Confidence 66542111 122211 3589999999863
No 382
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.88 E-value=0.84 Score=47.52 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=52.4
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.| .|.+|+.+++.|. ++|++|++++.+++..+.+.+ ..+..+.+|.+|++.++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALA----------AAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred EEEEcCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 477777 5899999999998 889999999999887665543 2366789999999844321
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 73 ~~~~~~~d~vi~~a 86 (255)
T TIGR01963 73 AAEFGGLDILVNNA 86 (255)
T ss_pred HHhcCCCCEEEECC
Confidence 134567666544
No 383
>PRK08605 D-lactate dehydrogenase; Validated
Probab=88.87 E-value=0.63 Score=51.46 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=50.8
Q ss_pred CCEEEeCCChhHHHHHHHh-hhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLL-SAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L-~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++.|+|+|++|+.+++.| . ..|.+|.+.|.+++... . ... ... +.++++ ++++|.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~----------~~g~~V~~~d~~~~~~~--~-~~~-----~~~--~~l~el-l~~aDvIv 205 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAK----------GYGSDVVAYDPFPNAKA--A-TYV-----DYK--DTIEEA-VEGADIVT 205 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHh----------cCCCEEEEECCCccHhH--H-hhc-----ccc--CCHHHH-HHhCCEEE
Confidence 4699999999999999999 5 67899999998765421 1 111 111 123332 46789999
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCC
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~ 633 (791)
++++....+-.+ ....+.+.|+.
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~ga 230 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKGA 230 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCCc
Confidence 888775433322 22344445553
No 384
>PRK06500 short chain dehydrogenase; Provisional
Probab=88.84 E-value=0.92 Score=47.09 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cC--CCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~--~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..++..+ .+ ...+++|.+|++..+++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFL----------AEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46888886 899999999998 889999999999887665543 22 45678999998755432
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~id~vi~~a 88 (249)
T PRK06500 77 AFGRLDAVFINA 88 (249)
T ss_pred HhCCCCEEEECC
Confidence 124677776554
No 385
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=88.84 E-value=6.5 Score=43.77 Aligned_cols=117 Identities=23% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHH--HcCCChHHHHHHHHHhhcc----cCCcC-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHH
Q 003861 121 LAVTVIVVPVFK--IARASPILGFFFAGIVLNQ----LGIIR-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAF 193 (791)
Q Consensus 121 L~~a~l~~~l~~--rl~lP~ivg~ilaGillGp----~gli~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~ 193 (791)
+..+..+..+.+ .+.+|..+..+++|+++.. .+..+ ..+.++.+++.++.+++=.+=+.+.+-+|-+.+-+.+
T Consensus 231 ~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~ 310 (404)
T COG0786 231 LAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLL 310 (404)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 334444444444 3679999999999999987 23222 5578899999999988888878999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHH----HHHHhhhccHHHH
Q 003861 194 GMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVV----IGAALSLSSSAFV 257 (791)
Q Consensus 194 ~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~all----lga~ls~TS~avv 257 (791)
.+-.+|+++..+...++ .+-.+| -++.++.+ +|.-+..|-+++.
T Consensus 311 viL~vQ~i~m~lfa~fv------------tfr~mG--------~~YdAaV~~~G~~G~gLGATPtAia 358 (404)
T COG0786 311 VILAVQTIVMALFAIFV------------TFRLMG--------KNYDAAVLAAGHCGFGLGATPTAIA 358 (404)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHhC--------cchhHHHHhcccccCccCCcHHHHH
Confidence 88888888766554444 234556 46666666 4455555554444
No 386
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=88.83 E-value=0.82 Score=48.63 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+ .+ ...+.+|.+|++.++++
T Consensus 11 k~vlVtGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELA----------RAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 45777776 889999999998 899999999999876554432 22 56789999999866543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 81 ~~~~~g~id~li~~ag 96 (278)
T PRK08277 81 ILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1346787776544
No 387
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.79 E-value=3.5 Score=45.05 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=79.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhH----HHHHhc----C-CC-EEEccCCCHHHHHh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVV----KESRKL----G-FP-ILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v----~~~~~~----~-~~-~v~GD~t~~~~L~~ 600 (791)
.+.|+|.|.+|..+|..|. ..+. +++++|.++++. .++.+. + .. .+++ .|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~----------~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y~---- 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYAL----------ALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDYD---- 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCHH----
Confidence 4789999999999999886 3333 799999998753 223321 1 12 2232 3333
Q ss_pred cCCCCCcEEEEEeCC------H-------HHHHHH----HHHHHHhCCCCcEEEEecChhhHHH--H-HHCC--CCeEEc
Q 003861 601 AGITSPKAVMIMYTD------K-------KRTIEA----VQRLRLAFPAIPIYARAQDMMHLLD--L-KKAG--ATDAIL 658 (791)
Q Consensus 601 agi~~a~~viv~~~~------d-------~~n~~~----~~~ar~l~p~~~iiara~~~~~~~~--L-~~~G--ad~Vi~ 658 (791)
..++||.+|++.+. + ..|..+ +..+++.+|+. ++..+.||-+.-. . +..| -.+||-
T Consensus 65 -~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~-i~ivvsNPvDv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 65 -DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEA-VIILITNPLDIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred -HhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEecCcHHHHHHHHHHHhCcChhheec
Confidence 45789988887763 1 345543 45566667775 4555555544322 2 2233 334555
Q ss_pred C-cHHHHHHHHHHHHhhcCCChHHHHH
Q 003861 659 E-NAETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 659 p-~~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
. ..+-..|+-..+-+.+++++..++-
T Consensus 143 ~gt~LDs~R~~~~la~~l~v~~~~V~~ 169 (307)
T cd05290 143 TGTMLDTARLRRIVADKYGVDPKNVTG 169 (307)
T ss_pred ccchHHHHHHHHHHHHHhCCCcccEEE
Confidence 4 3444566666666777777765443
No 388
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.71 E-value=0.83 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=52.6
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |.+|+.+++.|. +.|++|++.+.+++..+++.+ .....+.+|.+|++.++++
T Consensus 3 ~~lItG~s~giG~~ia~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFA----------EEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred EEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4677776 569999999998 889999999999887655432 2356788999999877652
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 73 ~~~~~~id~lI~~a 86 (252)
T PRK07677 73 DEKFGRIDALINNA 86 (252)
T ss_pred HHHhCCccEEEECC
Confidence 123567777554
No 389
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.71 E-value=3.5 Score=41.98 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=59.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|..|.++++.|. ..|.. ++++|.|.=... +.+.+.++. + +..|
T Consensus 21 ~s~VlIiG~gglG~evak~La----------~~GVg~i~lvD~d~ve~s---nL~rqfl~~----~---~diG------- 73 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLV----------LSGIGSLTILDDRTVTEE---DLGAQFLIP----A---EDLG------- 73 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHH----------HcCCCEEEEEECCcccHh---hCCCCcccc----H---HHcC-------
Confidence 568999999999999999998 78885 889998753222 122222221 0 1111
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHCCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--~~~~~L~~~Gad~Vi~p 659 (791)
......++..++++||++++-+...+. ...+.++ +.|-||..
T Consensus 74 ------~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~--~~dvVi~~ 117 (197)
T cd01492 74 ------QNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFS--QFDVVVAT 117 (197)
T ss_pred ------chHHHHHHHHHHHHCCCCEEEEEecCccccHHHHHh--CCCEEEEC
Confidence 123345678899999998876654432 2223333 57888764
No 390
>PRK12742 oxidoreductase; Provisional
Probab=88.67 E-value=1.6 Score=44.90 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHH-hcCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESR-KLGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~-~~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.+. +++..+++. +.+...+.+|.+|++.++++ ...+.
T Consensus 7 k~vlItGasggIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFV----------TDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 46888886 899999999998 88999888754 556665553 34677888999998866543 23456
Q ss_pred cEEEEEe
Q 003861 607 KAVMIMY 613 (791)
Q Consensus 607 ~~viv~~ 613 (791)
|.+|-..
T Consensus 77 d~li~~a 83 (237)
T PRK12742 77 DILVVNA 83 (237)
T ss_pred cEEEECC
Confidence 7776554
No 391
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.60 E-value=0.75 Score=53.30 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++++|+|.|..|...|..|. ..|++|+++|.++. ..+.+++.|..+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~----------~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 209 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA----------RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFH 209 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998 78999999998752 3455677787765
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~d 616 (791)
.+-.-..+ .+++. ..++|+++++++..
T Consensus 210 ~~~~v~~~~~~~~~-~~~~D~vilAtGa~ 237 (467)
T TIGR01318 210 LNCEVGRDISLDDL-LEDYDAVFLGVGTY 237 (467)
T ss_pred CCCEeCCccCHHHH-HhcCCEEEEEeCCC
Confidence 44211111 12221 13699999999874
No 392
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=88.59 E-value=0.61 Score=51.83 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=65.8
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
+.|+|.|+.|+.+++..+ +.|++|+++|.+++.... +..-..+.+|.+|++.+++.- +.+|.+ +.
T Consensus 2 igiiG~gql~~~l~~aa~----------~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t~ 66 (352)
T TIGR01161 2 VGILGGGQLGRMLALAAR----------PLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--TF 66 (352)
T ss_pred EEEECCCHHHHHHHHHHH----------HcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--Ee
Confidence 679999999999999998 899999999998864321 222335578999999887753 456754 33
Q ss_pred CCHHHHHHHHHHHHHh----CCCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 614 TDKKRTIEAVQRLRLA----FPAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l----~p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
+.+..+......+.+. .|+...+..++|... .+.|+++|+..
T Consensus 67 e~e~i~~~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~ 113 (352)
T TIGR01161 67 EFEHVDVEALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPV 113 (352)
T ss_pred CcCcCCHHHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 3322222223333333 233233334444333 34467777763
No 393
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.58 E-value=1.9 Score=47.89 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--------CcEEEEcC-----ChhhHHHHHhcCCCEEEc-cCCCH---
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--------WPFVAFDL-----NPSVVKESRKLGFPILYG-DASRP--- 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--------~~vvvID~-----d~~~v~~~~~~~~~~v~G-D~t~~--- 595 (791)
++.|+|.|.+|.++|..|. +.| ++|.+... +++..+...+...+.-+- +..-+
T Consensus 1 kI~VIGaG~wGtALA~~la----------~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA----------ENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCe
Confidence 4789999999999999998 567 89999987 556666655422222110 11000
Q ss_pred ---HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 003861 596 ---AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 639 (791)
Q Consensus 596 ---~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara 639 (791)
.-+++ -+++||.+++++++...- .++..++. +.++..++.-+
T Consensus 71 ~at~dl~e-al~~ADiIIlAVPs~~i~-~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 71 VAVPDLVE-AAKGADILVFVIPHQFLE-GICKQLKGHVKPNARAISCI 116 (342)
T ss_pred EEECCHHH-HHhcCCEEEEECChHHHH-HHHHHHHhhcCCCCEEEEEe
Confidence 01221 246889999999986432 22344443 33444454433
No 394
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.57 E-value=0.98 Score=47.78 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc--
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
.++++|.|. |.+|..+++.|. +.|+.|++++.+++..+... +. ...++.+|.+|++.++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFA----------RAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 347778877 899999999998 88999999999887755432 22 245678999998877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
.....|.+|...
T Consensus 79 ~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 79 QIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124568776543
No 395
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.56 E-value=2.9 Score=45.40 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHH----HHhc----CCC-EEEccCCCHHHHHhcCC
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE----SRKL----GFP-ILYGDASRPAVLLSAGI 603 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~----~~~~----~~~-~v~GD~t~~~~L~~agi 603 (791)
+.|+|.|.+|..++..+. ..|. +++++|.|++..+. +.+. +.. -+.. .+| .+ .+
T Consensus 1 I~IIGaG~vG~~ia~~la----------~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t~d---~~--~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA----------LKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TND---YE--DI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHH----------hCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-cCC---HH--Hh
Confidence 468999999999999987 5555 99999999886421 1111 111 1221 122 22 26
Q ss_pred CCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-CCCC--eEEcCc-HH
Q 003861 604 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGAT--DAILEN-AE 662 (791)
Q Consensus 604 ~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Gad--~Vi~p~-~~ 662 (791)
++||.+|++.+. | .+|.. ++..+++..|+..++ .+.|+.+. ..+.+ .|-+ +|+--- ..
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iI-v~sNP~di~t~~~~~~s~~~~~rviGlgt~l 143 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVI-VVTNPLDVMTYVAYKASGFPRNRVIGMAGVL 143 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCcHHHHHHHHHHHhCCCHHHEEEecchH
Confidence 899999887641 1 23444 345556667764433 34454433 23333 3433 455433 23
Q ss_pred HHHHHHHHHHhhcCCChHHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~~ 683 (791)
-..|+-..+-+.+++++..++
T Consensus 144 ds~r~~~~la~~l~v~~~~v~ 164 (300)
T cd01339 144 DSARFRYFIAEELGVSVKDVQ 164 (300)
T ss_pred HHHHHHHHHHHHhCCCccceE
Confidence 334555555566677665543
No 396
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.52 E-value=1.9 Score=46.39 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=72.4
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
-.+.+|+|+|.|-.|..-|+... ..|-+|+++|.|.++.+.+.+. +.. +.--.++++.+++ .+.++|
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~----------glgA~Vtild~n~~rl~~ldd~f~~r-v~~~~st~~~iee-~v~~aD 233 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI----------GLGADVTILDLNIDRLRQLDDLFGGR-VHTLYSTPSNIEE-AVKKAD 233 (371)
T ss_pred CCCccEEEECCccccchHHHHHh----------ccCCeeEEEecCHHHHhhhhHhhCce-eEEEEcCHHHHHH-Hhhhcc
Confidence 35678999999999999999987 8899999999999999888763 332 3333466667764 578899
Q ss_pred EEEEEe---CCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 608 AVMIMY---TDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 608 ~viv~~---~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
.+|-+. +.+.-.+..-...|++.|..-||=.+-
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 776543 334445555566888888755554443
No 397
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.44 E-value=0.92 Score=50.06 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC-
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag- 602 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.|++..+++. +.+ ..++..|.+|++..+++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la----------~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFA----------RRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 347888888 799999999998 89999999999998865543 333 446789999998877641
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
....|.+|-..+
T Consensus 77 ~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 77 QAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 246787766654
No 398
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.36 E-value=1 Score=53.08 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|++.|..+.. +...+.+.... +-++. ++++|.++
T Consensus 140 gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~~----~l~el-----l~~aDiV~ 199 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAK----------AFGMKVIAYDPYISP-ERAAQLGVELV----SLDEL-----LARADFIT 199 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEEE----cHHHH-----HhhCCEEE
Confidence 456899999999999999998 899999999975432 22233343322 22233 34667777
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++.+..+
T Consensus 200 l~lP~t~ 206 (526)
T PRK13581 200 LHTPLTP 206 (526)
T ss_pred EccCCCh
Confidence 7776643
No 399
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.33 E-value=0.96 Score=49.92 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +.+ ..++.+|.+|++.++++
T Consensus 9 k~vlITGas~gIG~~la~~la----------~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFA----------RRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46777776 899999999998 89999999999988765543 223 45678999999988764
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 79 ~~~~~g~iD~lInnA 93 (334)
T PRK07109 79 AEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHCCCCCEEEECC
Confidence 123567766544
No 400
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.28 E-value=2 Score=47.52 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC---ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL---NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~---d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|.|.|.+|...++.++ ..|.+|++++. ++++.+.+++.|...+ |..+++.-+...-..+|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak----------~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLR----------LRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCC
Confidence 457999999999999999887 78889999987 6888888888887654 44333221111224689
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++.+.
T Consensus 241 ~vid~~g~~~ 250 (355)
T cd08230 241 LIIEATGVPP 250 (355)
T ss_pred EEEECcCCHH
Confidence 9988888653
No 401
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.27 E-value=1.1 Score=47.18 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=51.8
Q ss_pred CCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH---hcCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---KLGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~---~~~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|.+ .+|+.+++.|. ++|++|++.+.|++..+.+. ......+..|.+|++..+++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIK----------DQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHH----------HCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHH
Confidence 468888885 79999999998 89999999988754333332 23456788999998876542
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 78 ~~~~g~iD~lv~nA 91 (252)
T PRK06079 78 KERVGKIDGIVHAI 91 (252)
T ss_pred HHHhCCCCEEEEcc
Confidence 234678776543
No 402
>PRK03612 spermidine synthase; Provisional
Probab=88.26 E-value=2.2 Score=50.17 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh--------------cCCCEEEccCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK--------------LGFPILYGDASR 594 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~--------------~~~~~v~GD~t~ 594 (791)
..++|+++|+|. |....+.++ ..+ .+++++|.|++.++.+++ ...+++.+|+.+
T Consensus 297 ~~~rVL~IG~G~-G~~~~~ll~----------~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 297 RPRRVLVLGGGD-GLALREVLK----------YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCeEEEEcCCc-cHHHHHHHh----------CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 345799999984 443333343 333 689999999999988876 235678888863
Q ss_pred HHHHHhcCCCCCcEEEEEeCC
Q 003861 595 PAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 595 ~~~L~~agi~~a~~viv~~~~ 615 (791)
.+++.. ++.|.|++..++
T Consensus 366 --~l~~~~-~~fDvIi~D~~~ 383 (521)
T PRK03612 366 --WLRKLA-EKFDVIIVDLPD 383 (521)
T ss_pred --HHHhCC-CCCCEEEEeCCC
Confidence 344432 689998887655
No 403
>PLN02775 Probable dihydrodipicolinate reductase
Probab=88.26 E-value=8.2 Score=41.53 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHH---HHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVK---ESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~---~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
..-+|+|.|+ |++|+++++.+. +.+.+.+. +|..++-.+ ++...+.+ +++....+++|.+.--+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~----------~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~-~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAV----------SAGLQLVPVSFTGPAGVGVTVEVCGVEVR-LVGPSEREAVLSSVKAE 78 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHh----------cCCCEEEEEeccccccccccceeccceee-eecCccHHHHHHHhhcc
Confidence 3458999998 999999999997 56676554 554442211 11111111 22234445667666556
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHH-CCCCeEEcCcHHHHHHHHHHHHh
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKK-AGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~-~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
.++.|++-.+..+.....+..+.+.+ +++|+-.. +++..+.+.+ .++--++.|+.-.|..+..++.+
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~~g--~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~ 148 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCKNG--LPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAME 148 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 79988888888777667677777764 45444322 3344444444 47788999999888887777765
No 404
>PRK07775 short chain dehydrogenase; Provisional
Probab=88.25 E-value=0.97 Score=48.11 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=54.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc--
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a-- 601 (791)
++.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ . ....+.+|.+|++.++++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELA----------AAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357888885 899999999998 889999999988776544332 2 245678999999988642
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
.....|++|-..+
T Consensus 80 ~~~~~~~~id~vi~~Ag 96 (274)
T PRK07775 80 QAEEALGEIEVLVSGAG 96 (274)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1245677765553
No 405
>PRK08223 hypothetical protein; Validated
Probab=88.24 E-value=3.3 Score=44.66 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|-.|..+++.|. ..|. .++++|.|.=....+. -++.+ ...| +
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA----------~aGVG~i~lvD~D~Ve~SNLn---RQ~l~--------------~~~d-i 78 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLA----------RLGIGKFTIADFDVFELRNFN---RQAGA--------------MMST-L 78 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHH----------HhCCCeEEEEeCCCcchhccc---cccCc--------------ChhH-C
Confidence 568999999999999999998 6777 5888887754332221 11111 1111 0
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+. ...-.+...++++||+++|.+... ++++...+- .+.|-|+.-.
T Consensus 79 ----G~-~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll-~~~DlVvD~~ 125 (287)
T PRK08223 79 ----GR-PKAEVLAEMVRDINPELEIRAFPEGIGKENADAFL-DGVDVYVDGL 125 (287)
T ss_pred ----CC-cHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHH-hCCCEEEECC
Confidence 11 233345678899999999777543 344444432 2688888654
No 406
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.24 E-value=1.1 Score=46.23 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.|. |..|+.+++.|. ++|++|++++.+++..+...+ .+ ...+.+|.+|++.++++ +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLA----------ADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46888876 899999999998 789999999999887554432 22 55677999999877553 2
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
....|+++-+.
T Consensus 76 ~~~~~~~id~vi~~a 90 (246)
T PRK05653 76 AVEAFGALDILVNNA 90 (246)
T ss_pred HHHHhCCCCEEEECC
Confidence 23568777765
No 407
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.22 E-value=1.3 Score=46.14 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=58.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhh-------------------H----HHHHhc--C
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSV-------------------V----KESRKL--G 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~-------------------v----~~~~~~--~ 584 (791)
+.+|+|+|+|..|..+++.|. ..|. .++++|.|.=. + +++++. .
T Consensus 21 ~~~VlivG~GglGs~va~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLA----------AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD 90 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence 568999999999999999998 6777 68888776421 1 112221 1
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
...+..+.+.+ .+.+ -++++|.||.++++.+....+...+++.+
T Consensus 91 ~~i~~~~~~i~~~-~~~~-~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ 136 (228)
T cd00757 91 VEIEAYNERLDAE-NAEE-LIAGYDLVLDCTDNFATRYLINDACVKLG 136 (228)
T ss_pred CEEEEecceeCHH-HHHH-HHhCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 22333333322 2222 24679999999988877777778888875
No 408
>PTZ00325 malate dehydrogenase; Provisional
Probab=88.21 E-value=4.4 Score=44.55 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
+++.|+|. |++|..++..|.. .....+++++|.+... +.++++........+.+|+..+ ...++++|+
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~--------~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~-~~~l~gaDv 79 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQ--------NPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELW-EKALRGADL 79 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhc--------CCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCch-HHHhCCCCE
Confidence 48999999 9999999998861 1234689999984322 2233332223344555554332 234678999
Q ss_pred EEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHHHHH------H---CCCCeEEcCcHHHH
Q 003861 609 VMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLLDLK------K---AGATDAILENAETS 664 (791)
Q Consensus 609 viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~~~~L~------~---~Gad~Vi~p~~~~~ 664 (791)
||++.+.. ..|.. ++..+++.+|+ .++.-+.++-+.-... + ...++|+--..+-+
T Consensus 80 VVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs 158 (321)
T PTZ00325 80 VLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDV 158 (321)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHH
Confidence 98887651 13433 34567777887 4555555544432211 2 23455555544555
Q ss_pred HHHHHHHHhhcCCChHHHH
Q 003861 665 LQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 665 ~~la~~~l~~l~~~~~~~~ 683 (791)
.|+-..+-+.+++++..++
T Consensus 159 ~R~r~~la~~l~v~~~~V~ 177 (321)
T PTZ00325 159 VRARKFVAEALGMNPYDVN 177 (321)
T ss_pred HHHHHHHHHHhCcChhheE
Confidence 5666666666666665443
No 409
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.18 E-value=1 Score=49.18 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+++.|+ ..|.+|++.|.+... .+....+ .+ ++++ ++++|.|+
T Consensus 122 gktvgIiG~G~IG~~vA~~l~----------afG~~V~~~~r~~~~------~~~~~~~---~~---l~el-l~~aDiv~ 178 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAK----------AFGMNIYAYTRSYVN------DGISSIY---ME---PEDI-MKKSDFVL 178 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcc------cCccccc---CC---HHHH-HhhCCEEE
Confidence 457899999999999999997 789999999986431 1221111 12 2221 36788888
Q ss_pred EEeCCHHHHH--HHHHHHHHhCCCCcEE
Q 003861 611 IMYTDKKRTI--EAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~d~~n~--~~~~~ar~l~p~~~ii 636 (791)
+..+..+++- .-......+.|+..+|
T Consensus 179 ~~lp~t~~T~~li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 179 ISLPLTDETRGMINSKMLSLFRKGLAII 206 (303)
T ss_pred ECCCCCchhhcCcCHHHHhcCCCCeEEE
Confidence 8887754433 3244455555554433
No 410
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=88.14 E-value=2.5 Score=44.83 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=68.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEc----------CChhhHHHH---Hh-cCC--CEE---E-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFD----------LNPSVVKES---RK-LGF--PIL---Y- 589 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID----------~d~~~v~~~---~~-~~~--~~v---~- 589 (791)
..+++|-|||.+|+.+++.|. +.|..|+ +-| .|.+.++++ .+ .+. .-. +
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~----------e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~ 107 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLL----------ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG 107 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC
Confidence 348999999999999999998 8899999 445 233333222 11 111 000 0
Q ss_pred -cc-CCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCc
Q 003861 590 -GD-ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 590 -GD-~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.. .++++.|. .+||.++=+.-.+..|-..+..+++ +++++|+..- +++..+.|++-|+-. .|.
T Consensus 108 ~a~~~~~~~~~~----~~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L~~rGI~v--vPD 176 (254)
T cd05313 108 TAKYFEGKKPWE----VPCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVFRQAGVLF--APG 176 (254)
T ss_pred CCEEeCCcchhc----CCCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHHHHCCcEE--ECc
Confidence 01 13334442 3699877776655555554444443 3478888654 467888899998754 476
No 411
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=88.10 E-value=1.1 Score=47.05 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.|. |.+|+.+++.|. +.|++++++|.+++..+...+ .....+.+|.+|++.++++-
T Consensus 3 k~ilItG~~~~IG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLA----------EEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 35677776 688999999998 789999999998876544322 13668899999988776541
Q ss_pred ------CCCCcEEEEEeC
Q 003861 603 ------ITSPKAVMIMYT 614 (791)
Q Consensus 603 ------i~~a~~viv~~~ 614 (791)
....|++|-..+
T Consensus 73 ~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 135677766553
No 412
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=88.05 E-value=1.1 Score=51.70 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=60.2
Q ss_pred CEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
|+.++|.|..|.. +|+.|. +.|++|.+.|.++. ..+.+++.|..+..| .+++.+ +++|.||
T Consensus 1 ~~~~iGiggsGm~~la~~L~----------~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~~-----~~~d~vV 63 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILL----------NRGYQVSGSDIAENATTKRLEALGIPIYIG--HSAENL-----DDADVVV 63 (448)
T ss_pred CEEEEEECHHHHHHHHHHHH----------HCCCeEEEECCCcchHHHHHHHCcCEEeCC--CCHHHC-----CCCCEEE
Confidence 4788999999998 999998 89999999997654 345567778888766 445443 5688776
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+..+=+..|- ....||+.+ ++|+-+
T Consensus 64 ~spgi~~~~p-~~~~a~~~~--i~v~~~ 88 (448)
T TIGR01082 64 VSAAIKDDNP-EIVEAKERG--IPVIRR 88 (448)
T ss_pred ECCCCCCCCH-HHHHHHHcC--CceEeH
Confidence 6544334443 345566654 566643
No 413
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.01 E-value=1.2 Score=49.39 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc---C-----
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA---G----- 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a---g----- 602 (791)
...+-|+|+|-+|--+|-.+. +.|.+|+-+|.|+++++.+.+- ...+ .++.++++++++ |
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA----------~~G~~ViG~DIn~~~Vd~ln~G-~~~i-~e~~~~~~v~~~v~~g~lraT 76 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFA----------SAGFKVIGVDINQKKVDKLNRG-ESYI-EEPDLDEVVKEAVESGKLRAT 76 (436)
T ss_pred ceEEEEEccccccHHHHHHHH----------HcCCceEeEeCCHHHHHHHhCC-ccee-ecCcHHHHHHHHHhcCCceEe
Confidence 357999999999999999998 8999999999999999988753 2222 277777655543 2
Q ss_pred -----CCCCcEEEEEeCC
Q 003861 603 -----ITSPKAVMIMYTD 615 (791)
Q Consensus 603 -----i~~a~~viv~~~~ 615 (791)
++.||+++++.+.
T Consensus 77 td~~~l~~~dv~iI~VPT 94 (436)
T COG0677 77 TDPEELKECDVFIICVPT 94 (436)
T ss_pred cChhhcccCCEEEEEecC
Confidence 3389999998764
No 414
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=87.78 E-value=6.6 Score=42.66 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=73.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+-++.|+|.|++|+.....+.+ ..+.+++ ++|.|++. .+.+++.|.+..+.| -++.+++...++.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~---------~~~velvAVvdid~es~gla~A~~~Gi~~~~~~--ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILR---------SEHLEPGAMVGIDPESDGLARARRLGVATSAEG--IDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhc---------CCCcEEEEEEeCChhhHHHHHHHHcCCCcccCC--HHHHHhCcCCCCCC
Confidence 3469999999999998877762 4455654 67888864 355666776665422 24455544567899
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--------hhHHHHHH-CCCCeEEcCcHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--------MHLLDLKK-AGATDAILENAET 663 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--------~~~~~L~~-~Gad~Vi~p~~~~ 663 (791)
.++.+++++ .....+..+.+.+ .+++....-- -|.+.+.+ .+.+.|.+|...+
T Consensus 73 iVf~AT~a~-~H~e~a~~a~eaG--k~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 73 IVFDATSAG-AHVRHAAKLREAG--IRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred EEEECCCHH-HHHHHHHHHHHcC--CeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 999998874 4455555666553 3444322211 22233333 4577888888543
No 415
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.77 E-value=2.7 Score=46.79 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=55.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-cCCCEEEccCCCH---HHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRP---AVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~---~~L~~agi~~a~ 607 (791)
+++|+|.|++|.-.+...+ ..| .+|+++|.++++.+.+++ .+...+.-+..+. ..++.-+=..+|
T Consensus 171 ~V~V~GaGpIGLla~~~a~----------~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAK----------LLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCC
Confidence 7999999999999888776 566 578888999999999988 5666665544431 222333335799
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++...
T Consensus 241 ~vie~~G~~~ 250 (350)
T COG1063 241 VVIEAVGSPP 250 (350)
T ss_pred EEEECCCCHH
Confidence 9999999543
No 416
>PLN02928 oxidoreductase family protein
Probab=87.75 E-value=1.4 Score=48.97 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.+.+.|+|+|++|+.+|+.|+ ..|.+|++.|...+...... ..............+.|++ =++++
T Consensus 159 gktvGIiG~G~IG~~vA~~l~----------afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~a 227 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLR----------PFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEA 227 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------hCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhC
Confidence 457899999999999999998 89999999998643211110 0000000000001122322 13568
Q ss_pred cEEEEEeCCHHH--HHHHHHHHHHhCCCCc
Q 003861 607 KAVMIMYTDKKR--TIEAVQRLRLAFPAIP 634 (791)
Q Consensus 607 ~~viv~~~~d~~--n~~~~~~ar~l~p~~~ 634 (791)
|.|++..+..++ ++.-......+.|+..
T Consensus 228 DiVvl~lPlt~~T~~li~~~~l~~Mk~ga~ 257 (347)
T PLN02928 228 DIVVLCCTLTKETAGIVNDEFLSSMKKGAL 257 (347)
T ss_pred CEEEECCCCChHhhcccCHHHHhcCCCCeE
Confidence 888888775433 3333455555555543
No 417
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=87.69 E-value=1.2 Score=46.96 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. +.+|+.+++.|. +.|++|++.+.+++..++.. +. ....+.+|.+|++.++++-
T Consensus 11 k~~lItGa~~~iG~~ia~~l~----------~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYA----------KAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45777776 789999999998 88999999999988765543 22 3567899999999876531
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
....|++|.+.
T Consensus 81 ~~~~~~~id~li~~a 95 (265)
T PRK07097 81 IEKEVGVIDILVNNA 95 (265)
T ss_pred HHHhCCCCCEEEECC
Confidence 24578777655
No 418
>PLN02735 carbamoyl-phosphate synthase
Probab=87.66 E-value=0.39 Score=61.29 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=62.2
Q ss_pred CCCCEEEeCCCh--hHH---------HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQ--MGQ---------VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~--~G~---------~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
.++.++|+|.|. +|| ++++.|+ +.|+++++|+.||+.+..-.+.....++-+.+-++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr----------~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl 642 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQ----------DAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVL 642 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHH----------HcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHH
Confidence 467899999996 675 3669998 8999999999999986532233344555566777788
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHH
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIE 621 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~ 621 (791)
+-+.-+++|+|+...+.+..+..
T Consensus 643 ~i~~~e~~d~Vi~~~Ggq~~l~l 665 (1102)
T PLN02735 643 NVIDLERPDGIIVQFGGQTPLKL 665 (1102)
T ss_pred HHHHHhCCCEEEECCCchHHHHH
Confidence 88899999999888887654443
No 419
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=87.61 E-value=5.4 Score=46.65 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCCCEEE---eCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-------hhHHHHHhc--CCCEEEccCCCHHH
Q 003861 530 GSEPVVI---VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-------SVVKESRKL--GFPILYGDASRPAV 597 (791)
Q Consensus 530 ~~~~viI---~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-------~~v~~~~~~--~~~~v~GD~t~~~~ 597 (791)
.+++.++ +|.+.-...-++.|. +.|.+++++|... +.++++++. +..++.||....+-
T Consensus 233 ~~~~l~vgaavg~~~~~~~r~~~l~----------~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~ 302 (505)
T PLN02274 233 KDGKLLVGAAIGTRESDKERLEHLV----------KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQ 302 (505)
T ss_pred CCCCEEEEEEEcCCccHHHHHHHHH----------HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHH
Confidence 4566655 566677788889998 8999999999865 346777763 68888999988887
Q ss_pred HHhcCCCCCcEEEEEe-------CC--------HHHHHHHHHHHHHhCCCCcEEE--EecChhhHHHHHHCCCCeEEcCc
Q 003861 598 LLSAGITSPKAVMIMY-------TD--------KKRTIEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 598 L~~agi~~a~~viv~~-------~~--------d~~n~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
-+.+--..||+|.+.. +. ...++..+..+.+.. +++||| ..++..+..+...+||+.|+.-.
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs 381 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMMGS 381 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 6666666788886641 11 112333333333332 478998 57788999999999999998866
Q ss_pred H
Q 003861 661 A 661 (791)
Q Consensus 661 ~ 661 (791)
.
T Consensus 382 ~ 382 (505)
T PLN02274 382 F 382 (505)
T ss_pred h
Confidence 3
No 420
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=87.60 E-value=0.55 Score=52.84 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=44.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.-.|+|+|.|..|..+|-.|. +.|++|+++|.++.........+...+.-.+...++|++.|+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La----------~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALA----------DAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHh----------cCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCch
Confidence 347999999999999999998 8999999999986421111111223333445556677777764
No 421
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=87.59 E-value=0.91 Score=55.03 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCC-CCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHH-HHhcCCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNT-VGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAV-LLSAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~-~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~-L~~agi~~ 605 (791)
..++|+|.|. |-+|+.+++.|. + .|++|+++|.+++...... +.+++++.||.+|++. ++++ +++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll----------~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~ 382 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLL----------RDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKK 382 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHH----------hCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcC
Confidence 3457999995 999999999998 5 4799999999876544332 3468889999998654 4433 456
Q ss_pred CcEEE
Q 003861 606 PKAVM 610 (791)
Q Consensus 606 a~~vi 610 (791)
+|+|+
T Consensus 383 ~D~Vi 387 (660)
T PRK08125 383 CDVVL 387 (660)
T ss_pred CCEEE
Confidence 88777
No 422
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=87.50 E-value=3.6 Score=39.15 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred HhcCCCEEEc--cCCCHHHHHhcCCCCCcEEEEEeCCH--HHH-HHHHHHHHHhCC-CCcEEEEe-cChhhHHHHHHCCC
Q 003861 581 RKLGFPILYG--DASRPAVLLSAGITSPKAVMIMYTDK--KRT-IEAVQRLRLAFP-AIPIYARA-QDMMHLLDLKKAGA 653 (791)
Q Consensus 581 ~~~~~~~v~G--D~t~~~~L~~agi~~a~~viv~~~~d--~~n-~~~~~~ar~l~p-~~~iiara-~~~~~~~~L~~~Ga 653 (791)
+..|+.+++. |.+-++..+.+-=+++|.+.++.-+. ..+ -.++..+|+.++ ++++++-- .-++..+.|+++|+
T Consensus 27 ~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 27 ADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 4455665552 44556677777778899877776543 222 234555666655 45676652 33455778999999
Q ss_pred CeEEcCcHHH
Q 003861 654 TDAILENAET 663 (791)
Q Consensus 654 d~Vi~p~~~~ 663 (791)
|.++.|....
T Consensus 107 d~~~~~gt~~ 116 (132)
T TIGR00640 107 AEIFGPGTPI 116 (132)
T ss_pred CEEECCCCCH
Confidence 9999998643
No 423
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.48 E-value=1.3 Score=49.55 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=29.7
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN 573 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d 573 (791)
.+.++.|+|. |.+|..+++.|++ ..+++|+.+|.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~---------~~~~~V~g~D~~ 38 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRT---------RMQLEVIGHDPA 38 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh---------cCCCEEEEEcCC
Confidence 3568999999 9999999999982 348889999975
No 424
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.46 E-value=1.3 Score=46.44 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ . ...++.+|.+|++.++++
T Consensus 7 k~~lItGas~giG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFA----------REGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46777776 689999999998 899999999999887665432 2 255778999999866543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 77 ~~~~~~~id~li~~ag 92 (254)
T PRK07478 77 AVERFGGLDIAFNNAG 92 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1236777775553
No 425
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=87.45 E-value=9.1 Score=42.06 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhH
Q 003861 114 GLDTLTFLAVTVIVVPVFKIARASP--ILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 191 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~lP~--ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~ 191 (791)
.....+++.++.+.+.+++|+|+|. ++|-++.+.++.-.+ ..+...=+.+..++.+++--.+|.+++.+.+|+.+|.
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~-~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG-GPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHH
Q 003861 192 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVV 244 (791)
Q Consensus 192 ~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~all 244 (791)
........+..-......... ++.+.| .++..+++
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~----------l~~~~~--------~~~~t~~L 267 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWL----------LSRLTG--------IDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHC--------CCHHHHHH
No 426
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=87.36 E-value=17 Score=39.80 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhcccCCcCCc---hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHH
Q 003861 124 TVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNL---TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQV 200 (791)
Q Consensus 124 a~l~~~l~~rl~lP~ivg~ilaGillGp~gli~~~---~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~ 200 (791)
......+.+-++-|.+.+.++ |+++...|+--+. +.++.+++....+-||..|+.++.+++++.++........-.
T Consensus 170 ~~~~~~~~~~~~nP~iia~i~-Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 170 LMLIFVWKKLIKFPPLWAPLL-SVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHHHHHHHHHHhCCChHHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 003861 201 VLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILL 280 (791)
Q Consensus 201 llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~ 280 (791)
++.=+++..+ ..+++ -.....-...+.+..-+++...++.++--.+.+.....+..+.
T Consensus 249 il~P~i~~~~-------------~~~~~---------l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT 306 (321)
T TIGR00946 249 LVQPAVMAGI-------------SKLIG---------LRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLST 306 (321)
T ss_pred HHHHHHHHHH-------------HHHhC---------CChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHH
Q 003861 281 LQDIAVVPLLVIL 293 (791)
Q Consensus 281 l~Di~~v~~l~i~ 293 (791)
+--+..+++...+
T Consensus 307 ~ls~~tlp~~~~l 319 (321)
T TIGR00946 307 VLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHHH
No 427
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.35 E-value=0.75 Score=55.68 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++|+|+|.|..|...|..|. +.|++|+++|.+++ ..+.+++.|..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~----------~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLA----------RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEE
Confidence 3568999999999999999998 88999999998754 2444566676665
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~ 615 (791)
.+.....+ .+++. ..++|+++++++.
T Consensus 396 ~~~~v~~~i~~~~~-~~~~DavilAtGa 422 (654)
T PRK12769 396 LNCEVGKDISLESL-LEDYDAVFVGVGT 422 (654)
T ss_pred CCCEeCCcCCHHHH-HhcCCEEEEeCCC
Confidence 43211000 11111 1468999999875
No 428
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.35 E-value=1.5 Score=45.95 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHHhcCCCEEEccCCCHHHHHhc------CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSA------GI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~~~~~~~v~GD~t~~~~L~~a------gi 603 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+ ++..+++++.+...+.+|.+|++.++++ ..
T Consensus 8 k~~lItGas~gIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFL----------REGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 46778875 899999999998 889999887654 4455566656788899999999887654 12
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
.+.|.+|-+.
T Consensus 78 ~~id~li~~a 87 (255)
T PRK06463 78 GRVDVLVNNA 87 (255)
T ss_pred CCCCEEEECC
Confidence 4678777654
No 429
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=87.31 E-value=1.4 Score=42.40 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=46.9
Q ss_pred eCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c---CCCEEEccCCCHHHHHhcCC-CCCcE
Q 003861 537 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L---GFPILYGDASRPAVLLSAGI-TSPKA 608 (791)
Q Consensus 537 ~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~---~~~~v~GD~t~~~~L~~agi-~~a~~ 608 (791)
||.|+++..+++.+ ..+.+++.+|.+++.++.+++ . ..+++++|.++ +.+. + +++|.
T Consensus 12 cG~G~~~~~l~~~~-----------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~-~~~~~D~ 76 (152)
T PF13847_consen 12 CGTGRLLIQLAKEL-----------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQE-LEEKFDI 76 (152)
T ss_dssp -TTSHHHHHHHHHS-----------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGC-SSTTEEE
T ss_pred CcCcHHHHHHHHhc-----------CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccc-cCCCeeE
Confidence 66779999999876 357789999999999888865 2 35788999988 3332 3 79998
Q ss_pred EEEE
Q 003861 609 VMIM 612 (791)
Q Consensus 609 viv~ 612 (791)
|+..
T Consensus 77 I~~~ 80 (152)
T PF13847_consen 77 IISN 80 (152)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7776
No 430
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.31 E-value=1.3 Score=46.00 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=51.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHH----HHhc--CCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKE----SRKL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~----~~~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++ ..+. +++. ....+.+|.+|++.++++
T Consensus 7 k~vlItGasggiG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILA----------GAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 46888886 899999999998 88999999887643 3332 2222 346788999999877542
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
.....|.+|...
T Consensus 77 ~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 77 TAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHhCCCCcEEEECC
Confidence 223577776554
No 431
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=87.25 E-value=4.9 Score=43.39 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=69.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|.|++|+..+..+.+ ..+.+++ ++|.|++. .+.+++.|.+..+.|. ++.+++ ++.|+|
T Consensus 3 rVAIIG~G~IG~~h~~~ll~---------~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~--e~ll~~---~dIDaV 68 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR---------SEHLEMVAMVGIDPESDGLARARELGVKTSAEGV--DGLLAN---PDIDIV 68 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh---------CCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCH--HHHhcC---CCCCEE
Confidence 58899999999988776651 4566665 46888875 4556677877766432 334433 478999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--------ChhhHHHHH-HCCCCeEEcCcHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--------DMMHLLDLK-KAGATDAILENAE 662 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~--------~~~~~~~L~-~~Gad~Vi~p~~~ 662 (791)
++++++. .-...+..+.+.+ .+++.... -+-+.+... ..+.+.|.+|...
T Consensus 69 ~iaTp~~-~H~e~a~~al~aG--k~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~a 127 (285)
T TIGR03215 69 FDATSAK-AHARHARLLAELG--KIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQA 127 (285)
T ss_pred EECCCcH-HHHHHHHHHHHcC--CEEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHH
Confidence 9999886 3344555666654 34432211 112233333 3456777787753
No 432
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.24 E-value=0.83 Score=50.02 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.++ ..|.+|...|..+... +.++.. .+-++. ++++|.|+
T Consensus 145 gktvGIiG~G~IG~~vA~~~~----------~fgm~V~~~d~~~~~~----~~~~~~----~~l~el-----l~~sDvv~ 201 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQ----------AFGAKVVYYSTSGKNK----NEEYER----VSLEEL-----LKTSDIIS 201 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------hcCCEEEEECCCcccc----ccCcee----ecHHHH-----hhcCCEEE
Confidence 457999999999999999998 8899999999753211 112211 111223 35678887
Q ss_pred EEeCCH--HHHHHHHHHHHHhCCCCcEE
Q 003861 611 IMYTDK--KRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~d--~~n~~~~~~ar~l~p~~~ii 636 (791)
+..+-. ..++.-......+.|+..+|
T Consensus 202 lh~Plt~~T~~li~~~~~~~Mk~~a~lI 229 (311)
T PRK08410 202 IHAPLNEKTKNLIAYKELKLLKDGAILI 229 (311)
T ss_pred EeCCCCchhhcccCHHHHHhCCCCeEEE
Confidence 777643 33444455566666654433
No 433
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=87.23 E-value=0.82 Score=46.87 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=38.1
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
...++|.|+|.|.+|.-+|+.-. ..|++|.++|.|++...+++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a----------~sg~~V~l~d~~~~aL~~A~ 51 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAA----------TSGLNVWLVDANEDALSRAT 51 (298)
T ss_pred ccccceEEEcccccchhHHHHHH----------hcCCceEEecCCHHHHHHHH
Confidence 34679999999999999999887 89999999999999877665
No 434
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.23 E-value=14 Score=40.42 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=81.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH----HHHhcC----CCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESRKLG----FPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~----~~~~~~----~~~v~GD~t~~~~L~~ag 602 (791)
+.++.|+|.|.+|..++..|.. .....+++++|.+++..+ ++.+.. ..-+.+ .+|.+ .
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~--------~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~-~~dy~-----~ 68 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA--------KGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA-DKDYS-----V 68 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE-CCCHH-----H
Confidence 4589999999999999998861 133447999999887532 222211 123332 12333 2
Q ss_pred CCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcC-cH
Q 003861 603 ITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILE-NA 661 (791)
Q Consensus 603 i~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p-~~ 661 (791)
+++||.||++.+. | +.|..+ +..+++.+|+..++. +.|+.+. ..+.+ .|. ++|+-- ..
T Consensus 69 ~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~viv-vsNP~d~~t~~~~k~sg~p~~~viG~gt~ 147 (312)
T cd05293 69 TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLV-VSNPVDIMTYVAWKLSGLPKHRVIGSGCN 147 (312)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ccChHHHHHHHHHHHhCCCHHHEEecCch
Confidence 5889988886542 1 345543 455666778755444 4455443 23333 344 356654 44
Q ss_pred HHHHHHHHHHHhhcCCChHHHH
Q 003861 662 ETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 662 ~~~~~la~~~l~~l~~~~~~~~ 683 (791)
+-..|+-+.+-+.+++++..++
T Consensus 148 Ld~~R~~~~la~~l~v~~~~v~ 169 (312)
T cd05293 148 LDSARFRYLIAERLGVAPSSVH 169 (312)
T ss_pred HHHHHHHHHHHHHhCCChhhEE
Confidence 4455666666667777776544
No 435
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.21 E-value=0.84 Score=38.98 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+++|+|.|..|-++|..|. +.|.+|++++.++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~----------~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA----------ELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHH----------HhCcEEEEEeccchh
Confidence 4799999999999999998 899999999987764
No 436
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.17 E-value=1.3 Score=46.44 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=53.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.+.+++..++.. +.+ ...+.+|.+|++.++++
T Consensus 10 k~~lItGas~giG~~ia~~L~----------~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLA----------EYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 35777775 789999999998 88999999999987755442 222 45678999999877653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 80 ~~~~~~~id~vi~~ag 95 (254)
T PRK08085 80 IEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1245787776654
No 437
>PRK07041 short chain dehydrogenase; Provisional
Probab=87.15 E-value=1.7 Score=44.57 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc--CCCCCcEEE
Q 003861 538 GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--GITSPKAVM 610 (791)
Q Consensus 538 G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a--gi~~a~~vi 610 (791)
|-|.+|+.+++.|. ++|++|++++.+++..+...+ .+.+++.+|.+|++.++++ ...+.|.+|
T Consensus 5 as~~iG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li 74 (230)
T PRK07041 5 GSSGIGLALARAFA----------AEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVV 74 (230)
T ss_pred CCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEE
Confidence 45789999999998 889999999999887665432 2466889999999988764 345678777
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
-..+
T Consensus 75 ~~ag 78 (230)
T PRK07041 75 ITAA 78 (230)
T ss_pred ECCC
Confidence 7654
No 438
>PRK05650 short chain dehydrogenase; Provisional
Probab=87.14 E-value=1.3 Score=46.90 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=53.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h--cCCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~--~~~~~v~GD~t~~~~L~~a---- 601 (791)
+++|.|. |.+|+.+++.|. +.|.+|++++.+++..+.+. + ....++.+|.+|++.++++
T Consensus 2 ~vlVtGasggIG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWA----------REGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4667665 899999999998 88999999999988755432 2 2356788999998877653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 72 ~~~~~~id~lI~~ag 86 (270)
T PRK05650 72 EEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246777776544
No 439
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.13 E-value=1.4 Score=48.00 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=51.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH---HHHHh-----cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRK-----LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v---~~~~~-----~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.| .|-+|+.+++.|. +.|++|+++..|++.. +...+ .....+.+|.+|++.++++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLL----------LRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-
Confidence 4688888 5999999999998 7899998776555432 22211 2467889999999988765
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++.+|+|+-+.
T Consensus 75 ~~~~d~vih~A 85 (322)
T PLN02986 75 IEGCDAVFHTA 85 (322)
T ss_pred HhCCCEEEEeC
Confidence 23577776555
No 440
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.13 E-value=1 Score=54.32 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++|+|+|.|..|...|..|. +.|++|+++|.++. ..+.+++.|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~----------~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA----------RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFH 378 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEE
Confidence 3578999999999999999998 78999999998873 3455667787776
Q ss_pred EccCC-CHHHHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDAS-RPAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t-~~~~L~~agi~~a~~viv~~~~ 615 (791)
.+-.- ....+++. ..++|+++++++.
T Consensus 379 ~~~~v~~~~~~~~l-~~~~DaV~latGa 405 (639)
T PRK12809 379 LNCEIGRDITFSDL-TSEYDAVFIGVGT 405 (639)
T ss_pred cCCccCCcCCHHHH-HhcCCEEEEeCCC
Confidence 65321 11122222 2468999999886
No 441
>PRK06141 ornithine cyclodeaminase; Validated
Probab=87.13 E-value=1.5 Score=48.09 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.+++.|+|.|.+|+..++.+.. .....++.+.+.++++.+++.+. +..+.. ..+.+ + -+++|
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~--------~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~--~~~~~---~-av~~a 190 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHAS--------VRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV--VTDLE---A-AVRQA 190 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHh--------cCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE--eCCHH---H-HHhcC
Confidence 4579999999999999986641 03357899999999998776543 333332 22222 1 23689
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
|.|+.+|++.+ - +.....+.|+..|.+.-.
T Consensus 191 DIVi~aT~s~~-p---vl~~~~l~~g~~i~~ig~ 220 (314)
T PRK06141 191 DIISCATLSTE-P---LVRGEWLKPGTHLDLVGN 220 (314)
T ss_pred CEEEEeeCCCC-C---EecHHHcCCCCEEEeeCC
Confidence 98877777652 2 122345567766555433
No 442
>PRK08862 short chain dehydrogenase; Provisional
Probab=87.09 E-value=1.3 Score=45.82 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCEEEeCCCh-hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~G~-~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|.++ +|+.+++.|. ++|.+|++++.+++..++..+ .+ ...+..|.+|++.++++
T Consensus 6 k~~lVtGas~GIG~aia~~la----------~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFA----------RLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred eEEEEECCccHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 4678888755 9999999998 899999999999988665432 23 34556788888877642
Q ss_pred ---CCC-CCcEEEEEe
Q 003861 602 ---GIT-SPKAVMIMY 613 (791)
Q Consensus 602 ---gi~-~a~~viv~~ 613 (791)
... +.|.+|...
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 123 567766655
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.08 E-value=2.3 Score=52.03 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHH---HHH---
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---VLL--- 599 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~---~L~--- 599 (791)
-+++.|+|.|.+|..+|..+. ..|++|+++|.|++..++..+. ...+-.|-.+.++ .+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 382 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSA----------SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT 382 (714)
T ss_pred cceEEEECCchHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 457999999999999999998 7899999999999987654321 0011122222211 111
Q ss_pred ----hcCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 600 ----SAGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 600 ----~agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
-..+++||.||=+..+|.+ --.+-..+-+.-+.-.|+|.-.+.-....+
T Consensus 383 ~~~~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~i 436 (714)
T TIGR02437 383 PTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLL 436 (714)
T ss_pred EeCCHHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 1246899999888877632 222222333333322566665555444444
No 444
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=87.07 E-value=3.7 Score=43.83 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=64.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCCh--hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~--~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|+|++|+.+++.+.+ ..+.+++.+ +.++ ++.......+. .++ +|.+.+ -.++|.+
T Consensus 3 rVgIiG~G~iG~~~~~~l~~---------~~~~~l~~v~~~~~~~~~~~~~~~~~~-~~~---~d~~~l----~~~~DvV 65 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEH---------DPDLRVDWVIVPEHSIDAVRRALGEAV-RVV---SSVDAL----PQRPDLV 65 (265)
T ss_pred EEEEECCCHHHHHHHHHHhh---------CCCceEEEEEEcCCCHHHHhhhhccCC-eee---CCHHHh----ccCCCEE
Confidence 58999999999999999972 335555443 3322 22221111122 222 233333 3679999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEe----cChhhHH----HHHHCCCCeEEcCcHHHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA----QDMMHLL----DLKKAGATDAILENAETSLQLGS 669 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara----~~~~~~~----~L~~~Gad~Vi~p~~~~~~~la~ 669 (791)
+.+++.+.. ...+..+-+.+ .++++.. .+.+..+ ..++.|..-.+.+....+..+-+
T Consensus 66 ve~t~~~~~-~e~~~~aL~aG--k~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 66 VECAGHAAL-KEHVVPILKAG--IDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred EECCCHHHH-HHHHHHHHHcC--CCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 999987644 34444444443 4555432 2333333 34667886666666555544443
No 445
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.00 E-value=3.3 Score=44.28 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCC-HHHHHh-cCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLS-AGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~-~~~L~~-agi~~a~ 607 (791)
.+.++|.|.|.+|...++.++ ..|.+ |+++|.++++.+.+++.|...+. |..+ .+.+++ .+-..+|
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak----------~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAA----------AAGAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCC
Confidence 457899999999999999887 78987 88899999999988888865443 2222 222322 2334689
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++++.
T Consensus 190 ~vid~~G~~~ 199 (280)
T TIGR03366 190 VALEFSGATA 199 (280)
T ss_pred EEEECCCChH
Confidence 8887777644
No 446
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.99 E-value=1.1 Score=55.72 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCEEEeCCChhHHHH-HHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVL-ANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~l-a~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+|+.|+|.|..|... |+.|. +.|++|.+-|.++. ..+++++.|..+..|. +++.+ +++|.|
T Consensus 5 ~~i~viG~G~sG~salA~~L~----------~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~--~~~~~-----~~~d~v 67 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILL----------DRGYSVSGSDLSEGKTVEKLKAKGARFFLGH--QEEHV-----PEDAVV 67 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHH----------HCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHc-----CCCCEE
Confidence 479999999999998 99998 89999999997653 4556777888888776 33433 567877
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|...+=..+|-. ...||+.+ ++|+-+
T Consensus 68 V~SpgI~~~~p~-~~~a~~~g--i~v~~~ 93 (809)
T PRK14573 68 VYSSSISKDNVE-YLSAKSRG--NRLVHR 93 (809)
T ss_pred EECCCcCCCCHH-HHHHHHCC--CcEEeH
Confidence 665543444443 44566654 566554
No 447
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.85 E-value=2.4 Score=51.84 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHH---HHHh---
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---VLLS--- 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~---~L~~--- 600 (791)
++|.|+|.|.+|..+|..+. ..|++|+++|.+++..++..+. ...+-.|..+..+ .+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA----------SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred ceEEEECCchhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 57999999999999999998 8899999999999986553321 0011112222111 1111
Q ss_pred ----cCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 601 ----AGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 601 ----agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
..+++||.||=+..+|.+ --.+-..+-+.-|.-.|++.-.+.-....+
T Consensus 384 ~~~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~l 436 (715)
T PRK11730 384 TLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLL 436 (715)
T ss_pred eCCHHHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 235789999888777632 222223333333332466655544444444
No 448
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=86.84 E-value=0.82 Score=49.22 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=50.2
Q ss_pred EeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHH--HHHhcCCC-EEEccCCCHHHHHhcCCCCCcEEE
Q 003861 536 IVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVK--ESRKLGFP-ILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 536 I~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~--~~~~~~~~-~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.=|.|-+|+.++++|. +.| ++|.++|.++.... ...+.+.. +++||.+|++.++++ ++.+|+|+
T Consensus 3 TGgsGflG~~iv~~Ll----------~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLL----------ERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred EcCCcHHHHHHHHHHH----------HCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH-hcCCceEE
Confidence 3478999999999998 788 78999998776432 34444444 889999999999875 46678776
Q ss_pred EE
Q 003861 611 IM 612 (791)
Q Consensus 611 v~ 612 (791)
=+
T Consensus 72 H~ 73 (280)
T PF01073_consen 72 HT 73 (280)
T ss_pred Ee
Confidence 55
No 449
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=86.84 E-value=2.4 Score=47.89 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|+|.+|+-+++.|. +.| ..+++...+.++.+++.+ .+ +++..-+-|. .-+.++|.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~----------~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~-~~l~~~Dv 241 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLA----------EKGVKKITIANRTLERAEELAKKLG-----AEAVALEELL-EALAEADV 241 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHH----------hCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHH-HhhhhCCE
Confidence 457999999999999999998 777 578888999999888764 45 3443333333 35789999
Q ss_pred EEEEeCCHH
Q 003861 609 VMIMYTDKK 617 (791)
Q Consensus 609 viv~~~~d~ 617 (791)
||.+|+...
T Consensus 242 VissTsa~~ 250 (414)
T COG0373 242 VISSTSAPH 250 (414)
T ss_pred EEEecCCCc
Confidence 999988753
No 450
>PRK07063 short chain dehydrogenase; Provisional
Probab=86.84 E-value=1.3 Score=46.48 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~----------~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFA----------REGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 45777776 689999999998 899999999999887655432 1245788999999877653
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 78 ~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHhCCCcEEEECCC
Confidence 1246777776543
No 451
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.83 E-value=0.95 Score=52.52 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=53.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++++|+|.|..|...|..|. +.|++|+++|.++. ..+.+.+.|..+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLA----------RAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------hCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999998 78999999997642 2344566777776
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~d 616 (791)
.+.....+ ..++. ..++|.++++++..
T Consensus 212 ~~~~v~~~~~~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 212 TNVEVGKDITAEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred eCCEECCcCCHHHH-HhhCCEEEEecCCC
Confidence 65433211 11111 14689999998873
No 452
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=86.82 E-value=1.1 Score=48.25 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=70.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|+|.|..|+.++..|. +.| .+|++++.++++.+.+.+.-......+. +.+ + ...+.++|.|
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~----------~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~-~-~~~~~~~Div 189 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLL----------DLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLE-L-QEELADFDLI 189 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhhhccceee-ccc-c-hhccccCCEE
Confidence 347999999999999999998 788 7899999999998777543111000011 000 0 1345789999
Q ss_pred EEEeCCHHHH-HHH-HHHHHHhCCCCcEEEEecChhh---HHHHHHCCCCeEEcCcHHHHHHHHH
Q 003861 610 MIMYTDKKRT-IEA-VQRLRLAFPAIPIYARAQDMMH---LLDLKKAGATDAILENAETSLQLGS 669 (791)
Q Consensus 610 iv~~~~d~~n-~~~-~~~ar~l~p~~~iiara~~~~~---~~~L~~~Gad~Vi~p~~~~~~~la~ 669 (791)
|-+|+..... ... -.....+.++..++=-+.++.. .+..++.|+ .++.-....-.+-+.
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~-~~~~G~~Ml~~Qa~~ 253 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGA-RTIDGLGMLVHQAAE 253 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcC-eecCCHHHHHHHHHH
Confidence 8888754211 000 0011223333333333344443 344567788 455655433333333
No 453
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=86.80 E-value=1.3 Score=55.76 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=55.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++|+|+|.|+-|-+.|..|. +.|++|+++|.++. .++.+++.|..+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La----------r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA----------VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFV 374 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEE
Confidence 3578999999999999999998 89999999998642 2445667787766
Q ss_pred EccCCCH-HHHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDASRP-AVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t~~-~~L~~agi~~a~~viv~~~~ 615 (791)
.+..... -++++..-.++|+|+++++.
T Consensus 375 ~n~~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 375 KNFVVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeEEeccEEeHHHhccccCCEEEEeCCC
Confidence 5432211 13444333579999999986
No 454
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=86.77 E-value=0.81 Score=51.57 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi 603 (791)
..|+|+|.|..|-.+|..|. +.|++|+++|..++.. .+.+ ..+.-.+...+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~----------~~G~~V~l~E~~~~~~---~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALA----------RAGLDVTLLERAPREL---LERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHH----------hCCCcEEEEccCcccc---ccCc-eeeeecHhHHHHHHHcCC
Confidence 47999999999999999998 8999999999983322 2222 455556666778888887
No 455
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.77 E-value=4.2 Score=37.40 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+++|+=+|-|++- .+|+.|+ +.|.+++++|.++.... +|.+.+.-|.|+|+.=- -+.||++
T Consensus 13 ~~gkVvEVGiG~~~-~VA~~L~----------e~g~dv~atDI~~~~a~----~g~~~v~DDitnP~~~i---Y~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFL-DVAKRLA----------ERGFDVLATDINEKTAP----EGLRFVVDDITNPNISI---YEGADLI 74 (129)
T ss_pred cCCcEEEEccchHH-HHHHHHH----------HcCCcEEEEecccccCc----ccceEEEccCCCccHHH---hhCccce
Confidence 46689999999986 5788998 89999999999999543 79999999999997543 2567777
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
-..-+-.|---.+...+|..+-.+.|.-
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 6666666666667778888765444433
No 456
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.76 E-value=5.7 Score=46.37 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=80.9
Q ss_pred EeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC---Chh----hHHHHHhc--CCCEEEccCCCHHHHHhcCCCCC
Q 003861 536 IVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL---NPS----VVKESRKL--GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 536 I~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~---d~~----~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.+|.+.--...++.|. +.|.+++++|. +.. .++++++. +..++-|+..+.+.-+.+--..|
T Consensus 235 avg~~~~~~~~~~~l~----------~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 235 AISTRPEDIERAAALI----------EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGA 304 (495)
T ss_pred EECCCHHHHHHHHHHH----------HCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCC
Confidence 4677666678888898 89999999997 332 46666654 67899999998877555544556
Q ss_pred cEEEEEeC-------C-------H-HHH-HHHHHHHHHhCCCCcEEE--EecChhhHHHHHHCCCCeEEcCcH
Q 003861 607 KAVMIMYT-------D-------K-KRT-IEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 607 ~~viv~~~-------~-------d-~~n-~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
|.+.+..+ . + ... ..++..+++. ++++|+ ...++.+..+...+|||.|+.-..
T Consensus 305 d~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 305 DGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER--GVPCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred CEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc--CCeEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 67765421 1 1 111 2333444444 479999 999999999999999999998774
No 457
>PRK05865 hypothetical protein; Provisional
Probab=86.76 E-value=5.9 Score=49.16 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=72.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++.. ...+..++.+|.+|++.++++ ++++|+||-
T Consensus 2 kILVTGATGfIGs~La~~Ll----------~~G~~Vv~l~R~~~~~---~~~~v~~v~gDL~D~~~l~~a-l~~vD~VVH 67 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLL----------SQGHEVVGIARHRPDS---WPSSADFIAADIRDATAVESA-MTGADVVAH 67 (854)
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCchhh---cccCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4788885 999999999998 8899999999875421 123578899999999888764 346888877
Q ss_pred EeCC----HHHHHHH----HHHHHHhCCCCcEEEEecCh---hhHHHHHHCCCCeEEc
Q 003861 612 MYTD----KKRTIEA----VQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAIL 658 (791)
Q Consensus 612 ~~~~----d~~n~~~----~~~ar~l~p~~~iiara~~~---~~~~~L~~~Gad~Vi~ 658 (791)
+... .+.|+.. +..+++.+.+ ++|- ..+. ..++.+++.|.+.++.
T Consensus 68 lAa~~~~~~~vNv~GT~nLLeAa~~~gvk-r~V~-iSS~~K~aaE~ll~~~gl~~vIL 123 (854)
T PRK05865 68 CAWVRGRNDHINIDGTANVLKAMAETGTG-RIVF-TSSGHQPRVEQMLADCGLEWVAV 123 (854)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHcCCC-eEEE-ECCcHHHHHHHHHHHcCCCEEEE
Confidence 6532 2345443 3444544422 3322 2322 3344556678776543
No 458
>PRK06197 short chain dehydrogenase; Provisional
Probab=86.74 E-value=2.4 Score=45.93 Aligned_cols=72 Identities=17% Similarity=0.039 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----Hh----cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RK----LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~----~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+.+ .+ ....++.+|.+|++.++++
T Consensus 17 k~vlItGas~gIG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALA----------AKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 46777776 899999999998 7899999999988765433 21 1355788999999877653
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|++|-..
T Consensus 87 ~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 87 DALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHhhCCCCCEEEECC
Confidence 234678776655
No 459
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=86.64 E-value=1.6 Score=45.01 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~ 607 (791)
.+.+++|+|+|..|+.+++.+.. ...|++++ ++|.|+++..... .+.++ .+. +.+.+. .-.++|
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~--------~~~g~~ivgv~D~d~~~~~~~i-~g~~v--~~~---~~l~~li~~~~iD 148 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF--------EKRGFKIVAAFDVDPEKIGTKI-GGIPV--YHI---DELEEVVKENDIE 148 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc--------ccCCcEEEEEEECChhhcCCEe-CCeEE--cCH---HHHHHHHHHCCCC
Confidence 34579999999999999986430 14577766 5788887653211 12322 122 223322 224689
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.++++++++... .++..+.+.+
T Consensus 149 ~ViIa~P~~~~~-~i~~~l~~~G 170 (213)
T PRK05472 149 IGILTVPAEAAQ-EVADRLVEAG 170 (213)
T ss_pred EEEEeCCchhHH-HHHHHHHHcC
Confidence 899998876543 3444455543
No 460
>PRK09242 tropinone reductase; Provisional
Probab=86.59 E-value=1.3 Score=46.42 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ .....+.+|.++++.++++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFL----------GLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 35677775 799999999998 889999999999887665542 1245678999998765432
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 80 ~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 80 DWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1246787777664
No 461
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.57 E-value=1.2 Score=46.65 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=52.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--C----CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--G----IT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--g----i~ 604 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++. ........++.+|.+|++.++++ . ..
T Consensus 7 k~~lItGas~gIG~~la~~l~----------~~g~~v~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFL----------AAGATVVVCGRRAPE--TVDGRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCChhh--hhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677776 689999999998 889999999998865 22233467889999999877653 1 24
Q ss_pred CCcEEEEEe
Q 003861 605 SPKAVMIMY 613 (791)
Q Consensus 605 ~a~~viv~~ 613 (791)
+.|.+|-+.
T Consensus 75 ~id~vi~~a 83 (252)
T PRK07856 75 RLDVLVNNA 83 (252)
T ss_pred CCCEEEECC
Confidence 568777654
No 462
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=86.52 E-value=45 Score=38.71 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCE-EEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPI-LYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~-v~GD~t~~~~L~~agi~~a~~ 608 (791)
+++++|+|.|.-|+.+++.|++ ..+.|++++ .+|.|+.. +.++ +.|+..| ..+-+.-.++|.
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~-------~~~~g~~vVGfiDdd~~~-------g~~VpvlG~~~d--L~~~v~~~~Ide 206 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRN-------EPWLGFEVVGVYHDPKPG-------GVSNDWAGNLQQ--LVEDAKAGKIHN 206 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhc-------CccCCeEEEEEEeCCccc-------cCCCCcCCCHHH--HHHHHHhCCCCE
Confidence 4579999999999999999972 012355554 46765421 2222 3454333 222233467888
Q ss_pred EEEEeCCHH--HHHHHHHHHHHhCCCCcEEEEe
Q 003861 609 VMIMYTDKK--RTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 609 viv~~~~d~--~n~~~~~~ar~l~p~~~iiara 639 (791)
|+++.++.+ .-..+...+++...+++++-..
T Consensus 207 ViIAip~~~~~~l~ell~~~~~~~v~V~ivP~l 239 (463)
T PRK10124 207 VYIAMSMCDGARVKKLVRQLADTTCSVLLIPDV 239 (463)
T ss_pred EEEeCCCcchHHHHHHHHHHHHcCCeEEEecch
Confidence 888887643 3344556666665444444433
No 463
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.52 E-value=1.6 Score=46.28 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=52.5
Q ss_pred CCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh---hhHHHHHhc--CCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---SVVKESRKL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~---~~v~~~~~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|.+ .+|+.+++.|. ++|++|++.+.++ +.++++.+. ....+..|.+|++..+++
T Consensus 7 k~~lITGas~~~GIG~aia~~la----------~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHH----------HCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHH
Confidence 468899987 59999999998 8999999998773 334444432 245678999999877753
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~~~g~iD~linnA 92 (262)
T PRK07984 77 ELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHhhcCCCCEEEECC
Confidence 234567777555
No 464
>PRK07035 short chain dehydrogenase; Provisional
Probab=86.48 E-value=1.5 Score=45.76 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=52.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|..+++.|. +.|++|++++.+++..+.+.+ .+ ...+..|.+|++..+++
T Consensus 9 k~vlItGas~gIG~~l~~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLA----------QQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45777775 788999999998 789999999999887655443 22 45778999999866542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 79 ~~~~~~~id~li~~a 93 (252)
T PRK07035 79 IRERHGRLDILVNNA 93 (252)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776444
No 465
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.46 E-value=1.7 Score=45.97 Aligned_cols=72 Identities=15% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCEEEeCCCh---hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---hHHHHHhc-C-CCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGFGQ---MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRKL-G-FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~G~---~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---~v~~~~~~-~-~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|.++ +|+.+++.|. ++|++|++.+.+++ .++++.+. + ...+..|.+|++..+++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la----------~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAK----------KHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHH----------HcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 4678889974 9999999998 89999999887742 34444332 3 23567999998876543
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 79 ~~~~~~g~iDilVnna 94 (260)
T PRK06603 79 DIKEKWGSFDFLLHGM 94 (260)
T ss_pred HHHHHcCCccEEEEcc
Confidence 224567665543
No 466
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=86.44 E-value=4.4 Score=43.42 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=64.9
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC---H-HHHH-hcCCCCCcEEEEEeCCH
Q 003861 542 MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR---P-AVLL-SAGITSPKAVMIMYTDK 616 (791)
Q Consensus 542 ~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~---~-~~L~-~agi~~a~~viv~~~~d 616 (791)
+|..++-.|. +.|++|.+++.+ ++.+..++.|..+...+... + .+.. ....+.+|.+++++...
T Consensus 2 iG~~~a~~L~----------~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~ 70 (293)
T TIGR00745 2 VGSLYGAYLA----------RAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY 70 (293)
T ss_pred chHHHHHHHH----------hCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch
Confidence 5788888898 789999999997 67778887776544322110 0 1111 01245899999998875
Q ss_pred HHHHHHHHHHH-HhCCCCcEEEEecChhhHHHHHHC-CCCeE
Q 003861 617 KRTIEAVQRLR-LAFPAIPIYARAQDMMHLLDLKKA-GATDA 656 (791)
Q Consensus 617 ~~n~~~~~~ar-~l~p~~~iiara~~~~~~~~L~~~-Gad~V 656 (791)
.. ..+...++ .+.++..|+.-.|--.+.+.+++. +.+.|
T Consensus 71 ~~-~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v 111 (293)
T TIGR00745 71 QT-EEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRI 111 (293)
T ss_pred hH-HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCE
Confidence 32 23333344 346666777777777777777654 44443
No 467
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=86.44 E-value=2.4 Score=46.49 Aligned_cols=68 Identities=13% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++.|+|+|++|+..++.+.+ ..+.+++. +|.++ +... .+..+ +.. .|.+.+ ..++|++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~---------~pd~ELVgV~dr~~~~~~~----~~~~v-~~~-~d~~e~----l~~iDVV 64 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQ---------QPDMELVGVFSRRGAETLD----TETPV-YAV-ADDEKH----LDDVDVL 64 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHh---------CCCcEEEEEEcCCcHHHHh----hcCCc-ccc-CCHHHh----ccCCCEE
Confidence 479999999999999999962 45778775 58885 4332 12332 222 222222 2789999
Q ss_pred EEEeCCHHH
Q 003861 610 MIMYTDKKR 618 (791)
Q Consensus 610 iv~~~~d~~ 618 (791)
+++++++..
T Consensus 65 iIctPs~th 73 (324)
T TIGR01921 65 ILCMGSATD 73 (324)
T ss_pred EEcCCCccC
Confidence 999987544
No 468
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=86.43 E-value=1.4 Score=50.32 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=57.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HH----HHH-hcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VK----ESR-KLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~----~~~-~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.++|.|..|..+|+.|. +.|++|.+-|.++.. .+ .++ +.|..+..| .+++.+ +++
T Consensus 1 ~~~~iG~G~~G~a~a~~l~----------~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~~~~~-----~~~ 63 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLH----------KKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LHLEDL-----NNA 63 (433)
T ss_pred CEEEEEeCHhHHHHHHHHH----------HCCCEEEEEeCCCCccchhHHHHHhhccCcEEEec--CchHHh-----ccC
Confidence 3689999999999999998 899999999976542 21 123 357777776 334333 568
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.||...+=+.+|- ....||+.+ ++|+.+
T Consensus 64 d~vv~sp~i~~~~p-~~~~a~~~~--i~i~~~ 92 (433)
T TIGR01087 64 DLVVKSPGIPPDHP-LVQAAAKRG--IPVVGD 92 (433)
T ss_pred CEEEECCCCCCCCH-HHHHHHHCC--CcEEEH
Confidence 87766654444444 345566654 556554
No 469
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.40 E-value=6.4 Score=41.39 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|.|-.|..+++.|. ..|. +++++|.|.-....+. -+.++-+ ..+
T Consensus 24 ~~~VlvvG~GglGs~va~~La----------~~Gvg~i~lvD~D~ve~sNL~---RQ~l~~~---------~di------ 75 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLA----------AAGVGNLTLLDFDTVSLSNLQ---RQVLHSD---------ANI------ 75 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHH----------HcCCCEEEEEeCCcccccCcc---cceeeeH---------hhC------
Confidence 458999999999999999998 6675 5888887754332221 1222110 011
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh--hHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM--HLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~--~~~~L~~~Gad~Vi~p~ 660 (791)
+ ......+...+++.||+++|.+....-+ +...+- .++|-||.-.
T Consensus 76 ----G-~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~-~~~DlVvd~~ 122 (240)
T TIGR02355 76 ----G-QPKVESAKDALTQINPHIAINPINAKLDDAELAALI-AEHDIVVDCT 122 (240)
T ss_pred ----C-CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh-hcCCEEEEcC
Confidence 1 1234445788899999998777654332 222221 2678888543
No 470
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=86.40 E-value=1.7 Score=47.87 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=54.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+-|+|+|++|+.+|+.++ .-|.++..-|..+. -+ .++. ..+-+.| -++.| +++|.+.
T Consensus 146 gktvGIiG~GrIG~avA~r~~----------~Fgm~v~y~~~~~~-~~-~~~~-~~~~y~~--l~ell-----~~sDii~ 205 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK----------GFGMKVLYYDRSPN-PE-AEKE-LGARYVD--LDELL-----AESDIIS 205 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------cCCCEEEEECCCCC-hH-HHhh-cCceecc--HHHHH-----HhCCEEE
Confidence 457999999999999999998 88999999998875 11 1111 2222333 34444 4556555
Q ss_pred EEeCC--HHHHHHHHHHHHHhCCCCcEE
Q 003861 611 IMYTD--KKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~--d~~n~~~~~~ar~l~p~~~ii 636 (791)
+..+- +..++.-....+.+.|++.+|
T Consensus 206 l~~Plt~~T~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 206 LHCPLTPETRHLINAEELAKMKPGAILV 233 (324)
T ss_pred EeCCCChHHhhhcCHHHHHhCCCCeEEE
Confidence 55443 334444456666666654443
No 471
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=86.39 E-value=0.97 Score=50.96 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~ 608 (791)
.+++++|+|.|+.|+.+++.+. +.|++++++|.+|+..... ..-..+..|.+|++.+.+. .-.+.|+
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~----------~~G~~v~~~~~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~ 78 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQ----------RLGVEVIAVDRYANAPAMQ--VAHRSHVIDMLDGDALRAVIEREKPDY 78 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCchHH--hhhheEECCCCCHHHHHHHHHHhCCCE
Confidence 3557999999999999999998 8899999999998752211 1123567788888776554 3346887
Q ss_pred EEEEeCC
Q 003861 609 VMIMYTD 615 (791)
Q Consensus 609 viv~~~~ 615 (791)
++...++
T Consensus 79 vi~~~e~ 85 (395)
T PRK09288 79 IVPEIEA 85 (395)
T ss_pred EEEeeCc
Confidence 7655443
No 472
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=86.35 E-value=5.2 Score=41.09 Aligned_cols=66 Identities=24% Similarity=0.196 Sum_probs=46.5
Q ss_pred CEEEe--CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH----hcCCCCC
Q 003861 533 PVVIV--GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL----SAGITSP 606 (791)
Q Consensus 533 ~viI~--G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~----~agi~~a 606 (791)
.++=+ |.|.+.+.+++.. ..+..|+.||.++.. ...++.+++||.+++++++ ..+-+.+
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~-----------~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQI-----------GDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred EEEEEcccCCHHHHHHHHHc-----------CCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 34444 5566777888766 345689999998821 2246889999999987654 3566789
Q ss_pred cEEEEEe
Q 003861 607 KAVMIMY 613 (791)
Q Consensus 607 ~~viv~~ 613 (791)
|.|+...
T Consensus 119 D~V~S~~ 125 (209)
T PRK11188 119 QVVMSDM 125 (209)
T ss_pred CEEecCC
Confidence 9887644
No 473
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.30 E-value=6.9 Score=43.11 Aligned_cols=139 Identities=16% Similarity=0.232 Sum_probs=84.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh--hhHH----HHHhcCC-----CEEEccCCCHHHHHh
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVK----ESRKLGF-----PILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~--~~v~----~~~~~~~-----~~v~GD~t~~~~L~~ 600 (791)
++.|+|. |.+|..++..|. ..++..+...++++++|.++ +..+ ++.+... ..+. ..+ .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~---~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-----~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIA---SGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-----E 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH---hCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-----H
Confidence 5789999 999999999886 12332333556799999987 5321 1111100 0111 112 2
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHHHH----HHHHHHh-CCCCcEEEEecChhhH---HHHHHCC---CCeEEc
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTIEA----VQRLRLA-FPAIPIYARAQDMMHL---LDLKKAG---ATDAIL 658 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~~~----~~~ar~l-~p~~~iiara~~~~~~---~~L~~~G---ad~Vi~ 658 (791)
..+++||.||++.+.. ..|..+ +..+++. +|+..+++ +.|+-+. -..+..| .++|+-
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~t~~~~k~sg~~p~~~vig 150 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANTNALIALKNAPNLPPKNFTA 150 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHHHHHHHHHHcCCCCHHHEEE
Confidence 3457899988887641 224443 4455566 47755444 5666543 2345556 456776
Q ss_pred CcHHHHHHHHHHHHhhcCCChHHH
Q 003861 659 ENAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 659 p~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
-..+-..|+-..+-+.+++++..+
T Consensus 151 ~t~LDs~R~r~~la~~l~v~~~~V 174 (323)
T cd00704 151 LTRLDHNRAKAQVARKLGVRVSDV 174 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcCHHHc
Confidence 666666777777878888888766
No 474
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.27 E-value=3.4 Score=46.13 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=58.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhH----HHHHh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVV----KESRK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v----~~~~~--~~ 584 (791)
+.+|+|+|+|-.|..+++.|. ..|. +++++|.|. .++ +++++ ..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 97 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLA----------GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD 97 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence 458999999999999999998 6777 688889885 122 22332 22
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
+.++..+.+.++..+- ++++|.||.++++-+.-..+...+++.+
T Consensus 98 v~v~~~~~~i~~~~~~~~--~~~~DvVvd~~d~~~~r~~~n~~c~~~~ 143 (355)
T PRK05597 98 VKVTVSVRRLTWSNALDE--LRDADVILDGSDNFDTRHLASWAAARLG 143 (355)
T ss_pred cEEEEEEeecCHHHHHHH--HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2233445554433322 5789988888887655555666777765
No 475
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.25 E-value=1 Score=57.62 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=72.9
Q ss_pred CCCCEEEeCCChh-----------HHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~~-----------G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
.-++|+|+|.|.. |..+++.|+ +.|++|+++|.||..+..-... ...++-++.+.+.+
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~----------e~G~~vi~v~~np~~~~~d~~~-ad~~y~ep~~~e~l 74 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALK----------EEGYQVVLVNPNPATIMTDPAP-ADTVYFEPLTVEFV 74 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHH----------HcCCEEEEEeCCcchhhcCccc-CCeeEECCCCHHHH
Confidence 3468999999986 788999998 8999999999999765422222 22345567677766
Q ss_pred Hh-cCCCCCcEEEEEeCCH-HHHHHHHHH----HHHh-----CCCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 599 LS-AGITSPKAVMIMYTDK-KRTIEAVQR----LRLA-----FPAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 599 ~~-agi~~a~~viv~~~~d-~~n~~~~~~----ar~l-----~p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
.+ +.-++.|+++.+.+.+ ..|....+. +.+. +|+...+..+.|... .+.++++|...
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpv 143 (1068)
T PRK12815 75 KRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV 143 (1068)
T ss_pred HHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 66 4556899888776544 334332111 2222 233334445555544 35678888763
No 476
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=86.18 E-value=28 Score=39.45 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=67.5
Q ss_pred HcCCChHHHHHHHHHhhcccCCcCCc------hhHHHHHHHHHHHHHHHHhhc-CChHHHHHhhhHHHHHHHHHHHHHHH
Q 003861 133 IARASPILGFFFAGIVLNQLGIIRNL------TDVKVLSEWGILFLLFEMGLE-LSLARLKALAKFAFGMGLTQVVLSTL 205 (791)
Q Consensus 133 rl~lP~ivg~ilaGillGp~gli~~~------~~l~~l~elgl~~lLF~~Gle-ldl~~Lk~~~~~~~~la~~~~llt~~ 205 (791)
.+++|.....++.=+++.-+|++++. +..+++..--...+|+-.|+. +|++++.+.......+-.+.++++..
T Consensus 268 ~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~ 347 (414)
T PF03390_consen 268 LIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAV 347 (414)
T ss_pred hcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 35999999999998888888887642 456677888888899999998 99999988765555444444444433
Q ss_pred HHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhh
Q 003861 206 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALS 250 (791)
Q Consensus 206 ~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls 250 (791)
+.+ .+..+++|- .+...|+.-|.+.+
T Consensus 348 ~~a------------~~vG~l~g~-------YPvEsAItaGLC~a 373 (414)
T PF03390_consen 348 IGA------------FLVGKLVGF-------YPVESAITAGLCMA 373 (414)
T ss_pred HHH------------HHHHHHhCC-------ChHHHHHHhhhccc
Confidence 333 334566762 34555555554554
No 477
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=85.97 E-value=1.4 Score=50.70 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=68.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-c------cCCCHH-HHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-G------DASRPA-VLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-G------D~t~~~-~L~~agi 603 (791)
+++.|+|-|+.+..+++.++ +.|++++++|.+++.-.......-..+. + |.+|.+ +++-+.-
T Consensus 3 kkili~g~g~~~~~~~~aa~----------~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~ 72 (449)
T TIGR00514 3 DKILIANRGEIALRILRACK----------ELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEI 72 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHH----------HcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHH
Confidence 47899999999999999999 8999999998866532111111112222 2 334433 4444566
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAF-----PAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~-----p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
+++|+++-..+-..+|...+..+.+.+ |+...+..++|... .+.+++.|+..
T Consensus 73 ~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~ 130 (449)
T TIGR00514 73 TGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPC 130 (449)
T ss_pred hCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCC
Confidence 789988776642223333455555543 22234444455443 44467778764
No 478
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=85.96 E-value=23 Score=39.22 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHhhcccCCcCCc------hhHHHHHHHHHHHHHHHHhhc-CChHHHHHhh
Q 003861 135 RASPILGFFFAGIVLNQLGIIRNL------TDVKVLSEWGILFLLFEMGLE-LSLARLKALA 189 (791)
Q Consensus 135 ~lP~ivg~ilaGillGp~gli~~~------~~l~~l~elgl~~lLF~~Gle-ldl~~Lk~~~ 189 (791)
++|..+..++.|+++.-+|++++. ..-+++..--...+++-.|+. .|++++-+..
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~ 264 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL 264 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh
Confidence 789999999999999999987643 222355555556677778986 8999998876
No 479
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=85.94 E-value=3.5 Score=41.19 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=51.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|+|.|..|+.+++.|+ +.|++++ .+|.|++...+. -.|.+++ | ..+.+.+. ..+.+.+++
T Consensus 1 ~~~I~Gag~~g~~~~~~l~----------~~g~~vvgfid~~~~~~~~~-i~g~pvl-g---~~~~l~~~-~~~~~~~ii 64 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAE----------DSGWEIVGFLDDNPALQGTS-VDGLPVL-G---GDEDLLRY-PPDEVDLVV 64 (201)
T ss_pred CEEEEcCCHHHHHHHHHHH----------hCCCEEEEEEcCCccccCcc-cCCccEE-C---CHHHHhhh-cccccEEEE
Confidence 4799999999999999998 6788877 667776543211 2466654 4 23344443 234577777
Q ss_pred EeCCHHHHHHHHHHHHHh
Q 003861 612 MYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l 629 (791)
+.++...-..+...+++.
T Consensus 65 ai~~~~~~~~i~~~l~~~ 82 (201)
T TIGR03570 65 AIGDNKLRRRLFEKLKAK 82 (201)
T ss_pred EcCCHHHHHHHHHHHHhC
Confidence 876544333444444443
No 480
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.94 E-value=1.5 Score=46.15 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c----CCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~----~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++++.+++..+...+ . ....+.+|.+|++.++++
T Consensus 9 k~~lItGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLL----------EAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 46777777 579999999998 889999999999887654432 1 244678999999877543
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 2346787766554
No 481
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.92 E-value=1.6 Score=46.03 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=51.3
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhh-HHH----HHhc---CCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSV-VKE----SRKL---GFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~-v~~----~~~~---~~~~v~GD~t~~~~L~~ 600 (791)
.+.++|.|. |.+|+.++++|. ++ |++|++++.+++. .++ +.+. ..+++.+|.+|++..++
T Consensus 8 ~~~vlItGas~giG~~la~~l~----------~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~ 77 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYL----------KNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPK 77 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHH----------hcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHH
Confidence 446888876 789999999997 66 5899999988775 333 3332 36788999999875432
Q ss_pred ----c-CCCCCcEEEEEe
Q 003861 601 ----A-GITSPKAVMIMY 613 (791)
Q Consensus 601 ----a-gi~~a~~viv~~ 613 (791)
+ .-.+.|.+|...
T Consensus 78 ~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHhcCCCCEEEEee
Confidence 1 114688777554
No 482
>PRK08263 short chain dehydrogenase; Provisional
Probab=85.91 E-value=1.9 Score=45.84 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=55.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.| .|.+|+.+++.|. ++|++|++++.+++..+++.+ .....+.+|.+|++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAAL----------ERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 3567776 5899999999998 789999999999988766544 2466788999999887643
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
.....|++|-+.+
T Consensus 74 ~~~~~d~vi~~ag 86 (275)
T PRK08263 74 HFGRLDIVVNNAG 86 (275)
T ss_pred HcCCCCEEEECCC
Confidence 1246787776654
No 483
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=85.82 E-value=1.7 Score=45.56 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|.++++++.+++..+++.+ . ....+..|.+|++.++++
T Consensus 12 k~vlVtG~s~gIG~~la~~l~----------~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45666665 788999999998 889999999998887665432 2 245778999999876542
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|++|-+.+
T Consensus 82 ~~~~~~~~d~li~~ag 97 (255)
T PRK06113 82 ALSKLGKVDILVNNAG 97 (255)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1245677766543
No 484
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.81 E-value=4.6 Score=45.35 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhH----HHHHh--c
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVV----KESRK--L 583 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v----~~~~~--~ 583 (791)
.+.+|+|+|+|..|..+++.|. ..|. +++++|.|. .++ +++++ .
T Consensus 40 ~~~~VliiG~GglG~~v~~~La----------~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np 109 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLA----------SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP 109 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC
Confidence 3568999999999999999998 7776 799999881 112 22222 2
Q ss_pred C--CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 584 G--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 584 ~--~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
+ +..+....+++ ...+. ++++|.|+-++++-+.-..+-..+++.+
T Consensus 110 ~v~i~~~~~~i~~~-~~~~~-~~~~DlVid~~Dn~~~r~~in~~~~~~~ 156 (370)
T PRK05600 110 DIRVNALRERLTAE-NAVEL-LNGVDLVLDGSDSFATKFLVADAAEITG 156 (370)
T ss_pred CCeeEEeeeecCHH-HHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2 23344444432 23322 5789999888888777666667777765
No 485
>PRK08324 short chain dehydrogenase; Validated
Probab=85.77 E-value=1.4 Score=53.58 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=57.8
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhcC---
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSAG--- 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~ag--- 602 (791)
+.++|.| .|.+|+.+++.|. +.|.+|+++|.+++..+.+.+. ....+.+|.+|++.++++-
T Consensus 423 k~vLVTGasggIG~~la~~L~----------~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLA----------AEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHH
Confidence 5688888 5999999999998 8899999999999887665443 5668899999998776531
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
....|.+|-+.+
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 236788877765
No 486
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=85.77 E-value=1 Score=53.47 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++.+.|+|.|+.|+.+++..+ +.|++|+++|.|++... .......+.+|..|++.+.+..- ++|++
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~----------~lG~~Vi~ld~~~~apa--~~~AD~~~v~~~~D~~~l~~~a~-~~dvI 87 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAAS----------QMGIKVKVLDPLEDCPA--SSVAARHVVGSFDDRAAVREFAK-RCDVL 87 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCch--hhhCceeeeCCCCCHHHHHHHHH-HCCEE
Confidence 4557889999999999999998 89999999999987321 11123356688999998876543 36755
Q ss_pred EEEeCCHHHHHHHHHHHHHhC----CCCcEEEEecChhhHHH-HHHCCCCe
Q 003861 610 MIMYTDKKRTIEAVQRLRLAF----PAIPIYARAQDMMHLLD-LKKAGATD 655 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~----p~~~iiara~~~~~~~~-L~~~Gad~ 655 (791)
.....+ .+......+.+.+ |....+..++|....+. |++.|+..
T Consensus 88 t~e~e~--v~~~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIpt 136 (577)
T PLN02948 88 TVEIEH--VDVDTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPL 136 (577)
T ss_pred EEecCC--CCHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCC
Confidence 333222 1122223344433 22233444445444444 56677653
No 487
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.75 E-value=1.8 Score=45.67 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC---hhhHHHHHhc----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN---PSVVKESRKL----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d---~~~v~~~~~~----~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++.+.+ ++..+++.+. ....+..|.+|++..+++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLH----------NAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHH----------HCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Confidence 46889997 489999999998 899999998654 3455555432 245778999999876542
Q ss_pred ------CCCCCcEEEEE
Q 003861 602 ------GITSPKAVMIM 612 (791)
Q Consensus 602 ------gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 78 ~~~~~~~~g~ld~lv~n 94 (257)
T PRK08594 78 FETIKEEVGVIHGVAHC 94 (257)
T ss_pred HHHHHHhCCCccEEEEC
Confidence 23456766643
No 488
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=85.74 E-value=1.6 Score=55.90 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCCCEEEeCCCh--hHHH---------HHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQ--MGQV---------LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~--~G~~---------la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
.+++++|+|.|. +|+. +++.|+ +.|++++++|.||+.+..-.+.....++-..+-++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk----------~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~ 622 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALR----------EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVL 622 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHH----------HCCCEEEEEeCCccccccccchhhheeecCCCHHHHH
Confidence 457899999987 4544 589998 8999999999999985432222222333333445566
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEE-------EEecC-hhhHHHHHHCCCC
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIY-------ARAQD-MMHLLDLKKAGAT 654 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~ii-------ara~~-~~~~~~L~~~Gad 654 (791)
+-+.-++.|+++...+.+.. +.++..+.+.+ ++++ ..+.| ....+.|+++|+.
T Consensus 623 ~i~~~e~~dgVi~~~g~~~~-~~la~~le~~G--i~ilg~s~~ai~~~~DK~~~~~~L~~~GIp 683 (1066)
T PRK05294 623 EIIEKEKPKGVIVQFGGQTP-LKLAKALEAAG--VPILGTSPDAIDLAEDRERFSKLLEKLGIP 683 (1066)
T ss_pred HHHHHcCCCEEEEEeCchhH-HHHHHHHHHCC--CceeCCCHHHHHHhCCHHHHHHHHHHcCcC
Confidence 66677899999887776533 34444555543 3333 22333 3344557888876
No 489
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.73 E-value=1.7 Score=45.41 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH---HHh--cCCCEEEccCCCHHHHHhc--C-
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE---SRK--LGFPILYGDASRPAVLLSA--G- 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~---~~~--~~~~~v~GD~t~~~~L~~a--g- 602 (791)
+.++|.| .|.+|+.+++.|. +.|++|++++.+++..+. +++ ....++.+|.+|++.++++ +
T Consensus 8 ~~ilItGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLA----------EEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4677777 4789999999998 899999999988876422 222 2366789999999977653 1
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
....|.+|-+.+
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 135787777665
No 490
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=85.72 E-value=4.2 Score=46.04 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=67.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|-.|..+++.|. ..|. .++++|.|.=....+. -++++. +..+
T Consensus 42 ~~~VlviG~GGlGs~va~~La----------~~Gvg~i~lvD~D~ve~sNL~---Rq~l~~---------~~di------ 93 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLA----------AAGVGTLGIVEFDVVDESNLQ---RQVIHG---------QSDV------ 93 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHH----------HcCCCeEEEECCCEecCcccc---cccccC---------hhcC------
Confidence 558999999999999999998 6777 5889997754332221 122211 1111
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh--HHHHHHCCCCeEEcCc-HHHHHHHHHHHHhhcCCC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH--LLDLKKAGATDAILEN-AETSLQLGSKLLKGFGVM 678 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~--~~~L~~~Gad~Vi~p~-~~~~~~la~~~l~~l~~~ 678 (791)
+. .....+...++++||+++|.+...+.+. ...+- .+.|.||.-. ....+.+.+.+....+.|
T Consensus 94 ----G~-~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~-~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 159 (392)
T PRK07878 94 ----GR-SKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELF-SQYDLILDGTDNFATRYLVNDAAVLAGKP 159 (392)
T ss_pred ----CC-hHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHH-hcCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 11 2233467788999999988766543332 22221 2688888652 233444444444444444
No 491
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=85.72 E-value=13 Score=40.71 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=77.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCCh--hhHHHHH----h----cCCCE-EEccCCCHHHH
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNP--SVVKESR----K----LGFPI-LYGDASRPAVL 598 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~--~~v~~~~----~----~~~~~-v~GD~t~~~~L 598 (791)
++.|+|. |.+|..++..|. ..|. +++++|.++ +..+..+ + .+... +.+ .+|.
T Consensus 2 kI~IiGatG~vG~~~a~~l~----------~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d~--- 67 (309)
T cd05294 2 KVSIIGASGRVGSATALLLA----------KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSDL--- 67 (309)
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCCH---
Confidence 5889998 999999999997 5665 499999965 3321111 1 11111 222 1222
Q ss_pred HhcCCCCCcEEEEEeCC------H-----HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHH-HHCCCC--eEEc
Q 003861 599 LSAGITSPKAVMIMYTD------K-----KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDL-KKAGAT--DAIL 658 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~------d-----~~n~~----~~~~ar~l~p~~~iiara~~~~~--~~~L-~~~Gad--~Vi~ 658 (791)
+ .+.+||.++++.+. + ..|.. ++..+++.+|+..+++-. |+-+ ...+ +..|.. +|+-
T Consensus 68 ~--~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~-npvd~~t~~~~~~~g~~~~~viG 144 (309)
T cd05294 68 S--DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT-NPVDVMTYKALKESGFDKNRVFG 144 (309)
T ss_pred H--HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHHHhcCCCHHHEee
Confidence 2 27899999998862 1 12333 344456667775555544 4432 2222 333433 4554
Q ss_pred C-cHHHHHHHHHHHHhhcCCChHHHHH
Q 003861 659 E-NAETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 659 p-~~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
- ..+-+.|+.+.+-+.+++++..++.
T Consensus 145 ~gt~LDs~R~~~~la~~l~v~~~~v~~ 171 (309)
T cd05294 145 LGTHLDSLRFKVAIAKHFNVHISEVHT 171 (309)
T ss_pred ccchHHHHHHHHHHHHHHCcChHHeEE
Confidence 4 2333566677777777888866543
No 492
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.71 E-value=1.7 Score=46.46 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.| .|.+|+.+++.|. ++|++|++.|.+++..++.. +.+ ...+..|.+|++.++++
T Consensus 7 k~vlVTGas~gIG~ala~~La----------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFA----------RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577776 5789999999998 89999999999987765443 233 45678999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~~g~id~li~nA 91 (275)
T PRK05876 77 AFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567666544
No 493
>PRK08618 ornithine cyclodeaminase; Validated
Probab=85.69 E-value=6.3 Score=43.39 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-----cCCCEEEccCCC-HHHHHhcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-----LGFPILYGDASR-PAVLLSAGI 603 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~-~~~L~~agi 603 (791)
.+++.|+|.|..|+..++.+.+ ..+ .++.+++.++++.+++.+ .+..+.. ..| ++.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~---------~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~----- 190 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLA---------VRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYV--VNSADEAI----- 190 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHh---------cCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEE--eCCHHHHH-----
Confidence 4579999999999998887641 223 579999999999877654 2343332 233 2233
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh-----hhHHHHHHCCCCeEEcCcHH
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM-----MHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~-----~~~~~L~~~Gad~Vi~p~~~ 662 (791)
+++|.|+.+|++.+- ... ..+.|+.+|.+.-.+. -..+.+++ ++.++.-..+
T Consensus 191 ~~aDiVi~aT~s~~p----~i~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~--a~~vvvD~~~ 247 (325)
T PRK08618 191 EEADIIVTVTNAKTP----VFS-EKLKKGVHINAVGSFMPDMQELPSEAIAR--ANKVVVESKE 247 (325)
T ss_pred hcCCEEEEccCCCCc----chH-HhcCCCcEEEecCCCCcccccCCHHHHhh--CCEEEECCHH
Confidence 689999999987632 223 5567787877653321 12234443 5666655543
No 494
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=85.67 E-value=1.5 Score=48.56 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
....+||+|.|-.|..+|..|. +.|.+|.|||.|-..
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~----------kdGRrVhVIERDl~E 80 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALA----------KDGRRVHVIERDLSE 80 (509)
T ss_pred CcccEEEECCcchHHHHHHHHh----------hCCcEEEEEeccccc
Confidence 4456999999999999999998 899999999998654
No 495
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=85.57 E-value=1.1 Score=53.28 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh---------------------hhHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---------------------SVVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~---------------------~~v~~~~~~~~~~v 588 (791)
..++|+|+|.|..|...+..|. +.|++|+++|.++ ++.+.+++.|..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~----------~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~ 205 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLR----------RMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVR 205 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998 7899999999642 34556777887766
Q ss_pred EccCC--C--HHHHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDAS--R--PAVLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t--~--~~~L~~agi~~a~~viv~~~~d 616 (791)
.+... | .+.+. ..+|+++.+++..
T Consensus 206 ~~~~~~~~~~~~~~~----~~~D~Vi~AtG~~ 233 (564)
T PRK12771 206 LGVRVGEDITLEQLE----GEFDAVFVAIGAQ 233 (564)
T ss_pred eCCEECCcCCHHHHH----hhCCEEEEeeCCC
Confidence 54222 1 22222 2589999999864
No 496
>PRK06487 glycerate dehydrogenase; Provisional
Probab=85.55 E-value=1.1 Score=49.15 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN 573 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d 573 (791)
.+.+.|+|+|++|+.+|+.++ ..|.+|+..|..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~----------~fgm~V~~~~~~ 180 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAE----------AFGMRVLIGQLP 180 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------hCCCEEEEECCC
Confidence 457999999999999999998 889999999865
No 497
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=85.54 E-value=4.1 Score=45.23 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=48.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHh-cCCCEE---------------EccCCCH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK-LGFPIL---------------YGDASRP 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~-~~~~~v---------------~GD~t~~ 595 (791)
++.|+|+|++|+.+++.+. +..+.+++.+ |.+++....+.+ .|+... .-..+.+
T Consensus 3 kVaI~G~GrIGr~va~al~---------~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~ 73 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVA---------AQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIE 73 (341)
T ss_pred EEEEECCCHHHHHHHHHHh---------cCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChh
Confidence 5899999999999999987 2456676654 656655444322 343311 0011222
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
+.+ +++|.++.+++.+ .....+..+.+.
T Consensus 74 el~-----~~vDVVIdaT~~~-~~~e~a~~~~~a 101 (341)
T PRK04207 74 DLL-----EKADIVVDATPGG-VGAKNKELYEKA 101 (341)
T ss_pred Hhh-----ccCCEEEECCCch-hhHHHHHHHHHC
Confidence 222 4689999998875 333333344433
No 498
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.45 E-value=2.1 Score=49.15 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=58.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++.|+|.|..|...++.|. +.|++|.+.|.++.. .+.++ .|..+..|+-. ++.+ +..|.+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~----------~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~-~~~~-----~~~d~v 69 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFL----------ARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLN-DEWL-----LAADLI 69 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHH----------HCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCC-HHHh-----cCCCEE
Confidence 47999999999999999998 899999999986543 23343 37777665332 2222 456766
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|+..+-+.+|- ....+++.+ ++|+.+
T Consensus 70 v~spgi~~~~~-~~~~a~~~g--~~v~~~ 95 (438)
T PRK03806 70 VASPGIALAHP-SLSAAADAG--IEIVGD 95 (438)
T ss_pred EECCCCCCCCH-HHHHHHHCC--CeEEEH
Confidence 66554444444 455567654 566665
No 499
>PLN02735 carbamoyl-phosphate synthase
Probab=85.44 E-value=3.6 Score=52.74 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCCEEEeCCChh-----------HHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~~-----------G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~ 599 (791)
-+.|+|+|.|.. |..+++.|+ +.|++|+++|.||+.+..-.+.... ++-++.+++.+.
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLk----------e~G~~Vi~vd~np~t~~~~~~~aD~-~yi~p~~~e~v~ 91 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALK----------EEGYEVVLINSNPATIMTDPETADR-TYIAPMTPELVE 91 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHH----------HcCCEEEEEeCCcccccCChhhCcE-EEeCCCCHHHHH
Confidence 458999999984 778999998 8999999999999753221111122 344677777776
Q ss_pred h-cCCCCCcEEEEEeCCH-HHHHHHHHH----HHHhC-----CCCcEEEEecChhhH-HHHHHCCCCe
Q 003861 600 S-AGITSPKAVMIMYTDK-KRTIEAVQR----LRLAF-----PAIPIYARAQDMMHL-LDLKKAGATD 655 (791)
Q Consensus 600 ~-agi~~a~~viv~~~~d-~~n~~~~~~----ar~l~-----p~~~iiara~~~~~~-~~L~~~Gad~ 655 (791)
+ +.-++.|+++.+.+.+ ..|....+. +.+.+ ++...+..+.|.... +.+++.|...
T Consensus 92 ~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpv 159 (1102)
T PLN02735 92 QVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKT 159 (1102)
T ss_pred HHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 6 4667899998877665 344332211 12222 122233344454444 3467778763
No 500
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=85.43 E-value=2.4 Score=48.93 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=53.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---------------------HHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---------------------v~~~~~~~~~~v 588 (791)
...+++|+|.|..|.+.|..|. +.|++|+++|.++.. .+.+++.|+.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 201 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELA----------KAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFR 201 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEE
Confidence 3568999999999999999998 789999999975311 234556778877
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~ 615 (791)
.+.....+ ++++. ..++|.++++++.
T Consensus 202 ~~~~v~~~v~~~~~-~~~yd~viiAtGa 228 (449)
T TIGR01316 202 MNFLVGKTATLEEL-FSQYDAVFIGTGA 228 (449)
T ss_pred eCCccCCcCCHHHH-HhhCCEEEEeCCC
Confidence 77543222 22221 2368999999985
Done!