Query 003862
Match_columns 790
No_of_seqs 134 out of 230
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 13:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 4E-238 8E-243 2079.3 15.8 731 11-749 1-762 (762)
2 KOG1107 Membrane coat complex 100.0 5E-226 1E-230 1861.1 63.3 754 27-790 1-760 (760)
3 KOG3682 Predicted membrane pro 100.0 2.7E-39 5.9E-44 360.1 43.2 531 20-638 146-759 (930)
4 KOG1107 Membrane coat complex 99.5 1.4E-14 3E-19 164.9 3.4 292 36-419 148-447 (760)
5 KOG1410 Nuclear transport rece 77.7 39 0.00084 41.0 13.7 80 342-422 273-354 (1082)
6 PF03000 NPH3: NPH3 family; I 61.7 1.2E+02 0.0027 32.8 12.6 55 335-397 195-249 (258)
7 PLN03217 transcription factor 56.3 7.4 0.00016 34.8 1.9 49 729-777 13-64 (93)
8 PF14677 FANCI_S3: FANCI solen 36.1 3.1E+02 0.0067 29.0 10.5 109 259-396 106-218 (219)
9 KOG1422 Intracellular Cl- chan 34.0 38 0.00082 35.6 3.2 72 63-152 124-201 (221)
10 PF11864 DUF3384: Domain of un 31.5 9E+02 0.019 28.3 20.9 86 443-534 265-353 (464)
11 PF08767 CRM1_C: CRM1 C termin 30.4 6.5E+02 0.014 27.9 12.4 153 329-493 77-247 (319)
12 PF08673 RsbU_N: Phosphoserine 27.2 2.5E+02 0.0054 24.9 6.7 54 319-378 18-71 (77)
13 PF03474 DMA: DMRTA motif; In 27.1 50 0.0011 25.6 2.0 24 259-283 5-28 (39)
14 PF11864 DUF3384: Domain of un 24.1 1.2E+03 0.026 27.2 25.3 254 423-693 3-311 (464)
15 COG2147 RPL19A Ribosomal prote 23.3 1.5E+02 0.0031 29.6 4.9 46 36-81 95-145 (150)
16 PF06743 FAST_1: FAST kinase-l 23.0 1.3E+02 0.0028 25.8 4.2 45 323-371 19-64 (71)
17 PF07540 NOC3p: Nucleolar comp 22.7 2.8E+02 0.0061 25.6 6.4 36 125-161 24-60 (95)
18 KOG0889 Histone acetyltransfer 21.7 2.3E+03 0.05 31.8 16.9 112 259-377 1958-2072(3550)
19 PF14223 UBN2: gag-polypeptide 20.7 3.6E+02 0.0079 24.8 7.1 52 220-272 32-83 (119)
20 PF15297 CKAP2_C: Cytoskeleton 20.0 1.8E+02 0.0039 33.0 5.4 65 273-353 104-168 (353)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=3.8e-238 Score=2079.31 Aligned_cols=731 Identities=55% Similarity=0.902 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHhchhcHHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhHHhHHHHHHHHhhcCCChhh
Q 003862 11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID 90 (790)
Q Consensus 11 k~L~ea~~~Vk~q~~~Mkr~ld~~~L~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~~~~l~d 90 (790)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHHhHHHhhcCCCchHHHHHHHHHHhhcccChhHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 003862 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD 170 (790)
Q Consensus 91 LYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~s~~~~~~g 170 (790)
|||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|++||+|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 678899
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHhhhhhhhhhhccCCCHHHHhhhhchHHHHHHHhcc
Q 003862 171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250 (790)
Q Consensus 171 ~v~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~ 250 (790)
++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||+|+|+++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHhHhhhhhcCCcchhHHhHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchh-----------hhH
Q 003862 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV 319 (790)
Q Consensus 251 D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~-----------~~~ 319 (790)
|++||||||||||||||||||++||++||++|++++|+||+++|+++|||||++|+.+++++.++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999877654321 268
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC---CCCCChHHHHHHHHHH
Q 003862 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGE---GKLEDNRATKQIVALL 396 (790)
Q Consensus 320 ~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~---~~~~~~~~~~~l~~lL 396 (790)
++|++||+++.++++++|++|++|++++++|+++|+++|||++++|||.+|++|++++... +...+++..++|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 3344566778899999
Q ss_pred HchhhhhhhHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCC----
Q 003862 397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ---- 472 (790)
Q Consensus 397 ~~pl~~~~~~~~vL~l~~f~~Ll~~l~~~~r~~va~~Il~~~l~~~~~I~~~~~v~~ll~~~~~Li~d~~~~~~~~---- 472 (790)
+.|++++.++.++|+|++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|.+++++++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887642
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHhcCCCCCC-------C
Q 003862 473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENP-------F 545 (790)
Q Consensus 473 ~~~~e~~~eq~lvar~vhli~~~d~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~L~~~~~~~~~~~-------~ 545 (790)
.++++|.+||++|||+||+++++|+++|+++|..+|+||++||++|++||||||||++|+|+|+++..+... .
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~ 559 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDD 559 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccc
Confidence 478899999999999999999999999999999999999999999999999999999999999998765211 1
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHH
Q 003862 546 GEEGSTTPKKVFQLLNQTIETLYGVP-APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLI 624 (790)
Q Consensus 546 ~~~~~~~~kk~f~fv~~~i~~L~~~~-~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~i 624 (790)
.++...+++++|+|||+||+.|.+.. .++++||||||||++||++|++++|||||+|||+||||+|+||++|++||.+|
T Consensus 560 ~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~i 639 (762)
T PF03635_consen 560 DEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLI 639 (762)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 11112357899999999999997543 47999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCC-----CCccchhHHHHHHHHHHHHHHHHH
Q 003862 625 IGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQ-----DNMKDGERVLLCLKRALRIANAAQ 699 (790)
Q Consensus 625 i~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~-----~~~~d~krVleCLqkslkiA~~~~ 699 (790)
||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++. +.+||||||+|||||||||||+||
T Consensus 640 i~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 640 IGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp HHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999863 369999999999999999999999
Q ss_pred HhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHHHh
Q 003862 700 QMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEM 749 (790)
Q Consensus 700 d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~i~~~~in~Li~li~~~~ 749 (790)
| +.++++|||||||+|+|||++||++||++||||||++|++|+
T Consensus 720 d-------~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~~ 762 (762)
T PF03635_consen 720 D-------PSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKENL 762 (762)
T ss_dssp S-------HHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC-
T ss_pred C-------cchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcCC
Confidence 9 899999999999999999999999999999999999999985
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-226 Score=1861.06 Aligned_cols=754 Identities=66% Similarity=1.024 Sum_probs=723.7
Q ss_pred HHHHhchhcHHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhHHhHHHHHHHHhhcCCChhhHHHHHHHhcchhhHHH
Q 003862 27 MHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLY 106 (790)
Q Consensus 27 Mkr~ld~~~L~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~~~~l~dLYE~VQyagnIlPRLY 106 (790)
|+||||+|||||||||+++||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhcCCCchHHHHHHHHHHhhcccChhHHHHHHHHHHHhhhccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 003862 107 LLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (790)
Q Consensus 107 LmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~s~~~~~~g~v~dsi~Fll~NF~EM 186 (790)
||||||++|++++++|+|||||||+|||||||||+||||||+||+|++|++||+.|+++++....+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877777889999999999999
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHHHHHhhhhhhhhhhccCCCHHHHhhhhchHHHHHHHhccchhhhhHhHhhhhhcC
Q 003862 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVF 266 (790)
Q Consensus 187 NKLWVRlQhqg~~rer~~R~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvF 266 (790)
||||||||||||+||||+|++||+|||||||+||||||||+|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 003862 267 PDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (790)
Q Consensus 267 PDefHl~TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~ 346 (790)
|||||++||+.+|+||.+++|+||++.++.+|++||++|+.+++++.|....+.+|++||.++.+++++||+||+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998887776689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHH--HHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHHhcCCc
Q 003862 347 LYSSLLTFTLHVHPDRLDYADQVL--GACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424 (790)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll~~l~~ 424 (790)
+++|+++|+++|||++.+|+|++| +.|...+...+...+.+..+++.++|..|++.|+++.+++++++|++++..+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 888888877777777888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 003862 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKII 504 (790)
Q Consensus 425 ~~r~~va~~Il~~~l~~~~~I~~~~~v~~ll~~~~~Li~d~~~~~~~~~~~~e~~~eq~lvar~vhli~~~d~e~q~~~l 504 (790)
++++.+|..|++++++.++.+.+.++++.+|+++++|++|.++.|.++.|+++|.+||++||++||++.++||+.|+.|+
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003862 505 CTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCA 584 (790)
Q Consensus 505 ~~~r~~f~~gg~~ri~~t~p~LV~~~l~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~L~~~~~~~~~lkLyLq~A 584 (790)
..+|++|.+||++ ++||+||+||++|+|+|+++..++....|+ ....+++|+|+.+| +.++.++.++++||||||||
T Consensus 481 ~~~r~~f~~gG~~-l~~t~Pplv~~~~~Lir~~~~~~~~~~~~~-s~~~~~~~q~~~~~-~l~~~~e~~eL~LrLyLq~A 557 (760)
T KOG1107|consen 481 NSAKKHFIKGGPN-LKYTLPPLVFSAYKLVRRFRDMKDNDDKWD-SATKKFIFQFLNIC-ELLSNVELPELALRLYLQCA 557 (760)
T ss_pred HHHHHHhhcCCcc-ccccccHHHHHHHHHHHHcccccccchhhh-hhhHHHHHHHHhHH-HHhccCCchhhHHHHHHHHH
Confidence 9999999999986 999999999999999999998766554444 34568999999999 55567789999999999999
Q ss_pred HHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhccCchhhHHHHH
Q 003862 585 EAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVY 664 (790)
Q Consensus 585 ~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askLLkK~dQcrav~ 664 (790)
.+||+|+++++|||||+|||++|||+|||||+|++||.+|||||++||+|++||||+|+||||+||||||||||||||||
T Consensus 558 ~aAd~~~~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKPDQcRaVy 637 (760)
T KOG1107|consen 558 EAADQCDLETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKPDQCRAVY 637 (760)
T ss_pred HhcccCCCcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCC--CCCccchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHHH
Q 003862 665 ACSHLFWVDD--QDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLI 742 (790)
Q Consensus 665 ~cshL~w~~~--~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~i~~~~in~Li 742 (790)
.||||||+++ +..++|||||+||||||||||++||| +..+++|||||||+|+|||++||++||+++||+||
T Consensus 638 tcsHLfW~~~~ngE~l~dGkRVleCLkkAlkIA~qcmd-------~~~~vqLFIEILnrYiYfyek~n~~iti~~I~~LI 710 (760)
T KOG1107|consen 638 TCSHLFWSGRTNGEKLKDGKRVLECLKKALKIAQQCMD-------NLRQVQLFIEILNRYIYFYEKGNDGITIKHIESLI 710 (760)
T ss_pred eeehhhhcccCCccccCchHHHHHHHHHHHHHHHHHHh-------hccchhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Confidence 9999999987 56799999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhcc-CCCCCChhHHHHHHHHHHHHHHHhhhC-CCCCCCCCCCCC
Q 003862 743 ELITAEMQS-ESNSPDPAADAFFASTLRYIQFQKQKG-GAVGEKYEPIKV 790 (790)
Q Consensus 743 ~li~~~~~~-~~~~~~~~~~~~f~~t~~yI~~~~~~~-~~~~~r~~~i~~ 790 (790)
++|++|+.+ +.+++.+.+.+||.||++||+-+++++ ++.++.|++|.+
T Consensus 711 ~lik~n~~~l~~s~~~d~~~~~~~ntl~~l~l~~es~~~~l~~~ye~~~~ 760 (760)
T KOG1107|consen 711 KLIKTNAKSLKSSNEADLSESFLSNTLETLELIKESVLGALGELYEGIIF 760 (760)
T ss_pred HHHHhhhhhccccchhhhhhhHHHHHHHHHHHHhcCccccchhhhhcccC
Confidence 999999998 556667889999999999999999986 445888888753
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=360.12 Aligned_cols=531 Identities=17% Similarity=0.182 Sum_probs=413.0
Q ss_pred HHHhHHHHHHHhchhcHHHHHHHHHHHHHh-hhcCCCCchhhhHHHHHHHHhHHhHHHHHHHHhhcCC----C-------
Q 003862 20 LQQNAFYMHRALDSNNLRDALKYSAQMLSE-LRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGC----S------- 87 (790)
Q Consensus 20 Vk~q~~~Mkr~ld~~~L~~ALkhas~mL~E-LRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~~~----~------- 87 (790)
|-++.--.+++-..++-.+++|.....-+- +-|+.+ .+|+.-|+.++|.|+.+|+.++++++.+. +
T Consensus 146 I~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl~dt~v~--~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~~~~ 223 (930)
T KOG3682|consen 146 ILELSTKSIRAWSLDNTVENLKSDISSFKLLLDTFVA--WFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKNVKK 223 (930)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHhhhhhhhhccchhHH--hhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhhhhh
Confidence 444444455555555566666665444443 344444 89999999999999999999999987631 0
Q ss_pred -----------------hhhHHHHHHHh-------------cchhhHHHHHHHHhHHHhhcCCCchHHHHHHHHHHhhcc
Q 003862 88 -----------------IIDLYELVQHA-------------GNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGI 137 (790)
Q Consensus 88 -----------------l~dLYE~VQya-------------gnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGV 137 (790)
-.++.|...-+ ....||-||+.+|..|+-|.-...++|.|.+|+-|.||.
T Consensus 224 ~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~rg~ 303 (930)
T KOG3682|consen 224 ASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMFRGE 303 (930)
T ss_pred hHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcc
Confidence 12334443321 358999999999999999999877789999999999999
Q ss_pred cChhHHHHHHHHHHHhhhccCCCCCCCCCCCCCChhhhHHHHHHhHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHhh
Q 003862 138 QHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVG 217 (790)
Q Consensus 138 QhPlRGLFLR~YL~q~~k~~LPd~~s~~~~~~g~v~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~iLVG 217 (790)
|+|+..+|+|+|+++++...=|.. .|+++.++-.++--|...| +.
T Consensus 304 ~dPlvs~yar~y~~~~~~~i~~~~-------~~yL~k~~~d~l~~f~~~~----------------------------~d 348 (930)
T KOG3682|consen 304 QDPLVSDYARNYFLKLSEIIDIPI-------RFYLEKSMIDCLKFFDAAN----------------------------LD 348 (930)
T ss_pred CCchHHHHHHHHHHHHhhhcCcch-------HHHHHHHHHHHHHHHHHHh----------------------------HH
Confidence 999999999999999998765543 3456655544444444332 12
Q ss_pred hhhhhhhhccCCCHHHHhhhhchHHHHHHHhccchhhhhHhHhhhhhcCCcchhHHhHHHHHhhccccCCCCCHHHHHHH
Q 003862 218 KNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSR 297 (790)
Q Consensus 218 ~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~~l~~~V~i~~Il~s 297 (790)
+ +.|++=.-|.+.+.|...+-|++ +|+|.|++---|.+-|..-+.+-+++ |=||..++++
T Consensus 349 ~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv~~lLh~ 408 (930)
T KOG3682|consen 349 I-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNVMELLHR 408 (930)
T ss_pred H-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccHHHHHHH
Confidence 2 34555566888899999999977 67799999999999998665544433 2347788888
Q ss_pred HHHHHHHH-Hh------------hccCCCc------------------hhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 003862 298 LMERLSNY-AA------------SSTEVLP------------------EFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (790)
Q Consensus 298 Li~RL~~y-~~------------~~~~~i~------------------~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~ 346 (790)
++.-|+.- ++ +++.|.| +++...+.+..|..++++-+ ++||+.
T Consensus 409 ~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~n------~qdyv~ 482 (930)
T KOG3682|consen 409 KKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADISN------FQDYVD 482 (930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcC------HHHHHH
Confidence 88877732 21 1222222 23445677888998888875 999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHHhcCCchh
Q 003862 347 LYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSET 426 (790)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll~~l~~~~ 426 (790)
|.++|+++..++|..+ +||++|.+++.+++..... ++.+.+|++++.+-++|+.|+..++.+++|.++++++.+++
T Consensus 483 c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~~--ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilDl~~~~~ 558 (930)
T KOG3682|consen 483 CCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQT--EENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILDLIGYDI 558 (930)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhcc--chhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHHHhcccc
Confidence 9999999999999998 9999999999999987654 35677899999999999999999999999999999999976
Q ss_pred H-HHHHHHHHHHHHhcC-ccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHhhc-CCCHHHHHHH
Q 003862 427 N-KVMAMVIIQSIMKNN-TQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ-NDDTEEMFKI 503 (790)
Q Consensus 427 r-~~va~~Il~~~l~~~-~~I~~~~~v~~ll~~~~~Li~d~~~~~~~~~~~~e~~~eq~lvar~vhli~-~~d~e~q~~~ 503 (790)
+ .+|+..|++.+.++. .+|+|+..++.|++.|++|++.. +... .+|+-+....+||+|+.+++ |.|+|+|++|
T Consensus 559 ~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~da~-~~~~---~ed~kR~~s~LI~~f~~mVdfg~~~eq~L~f 634 (930)
T KOG3682|consen 559 QSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLCDAY-RLEE---SEDVKRAASQLICSFLSMVDFGTNLEQCLEF 634 (930)
T ss_pred hhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHh-hhhh---hhhhHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 5 799999999999854 58999999999999999999543 3321 23333778899999999999 9999999999
Q ss_pred HHHHHHHHhccCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHh----hCCCCHHHHHHH
Q 003862 504 ICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETL----YGVPAPELALRL 579 (790)
Q Consensus 504 l~~~r~~f~~gg~~ri~~t~p~LV~~~l~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~L----~~~~~~~~~lkL 579 (790)
+++||..|++..+ .+..||.+.++||.++.+. -||...||+.|++.+ +++..|..+++|
T Consensus 635 ~vecRe~f~~~~~-----~li~LI~S~n~la~~t~K~------------gkK~a~Fvr~Cia~~~~TIPSv~~p~~rlnl 697 (930)
T KOG3682|consen 635 IVECREDFGLRQN-----SLIHLIESLNQLAHRTQKS------------GKKKADFVRVCIANLSLTIPSVRDPSRRLNL 697 (930)
T ss_pred HHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHhheecccccChhhHhhh
Confidence 9999999998876 6889999999999998632 268899999999996 567789999999
Q ss_pred HHHHHHHhhhCCCccHHHHHHHHHHHhchhcc-cCcH--HHHHHHHHHHHHHhhccCCCccc
Q 003862 580 YLQCAEAANDSDLEPVAYEFFTQAYILYEEEI-SDSR--AQVTAIHLIIGTLQRMHVFGVEN 638 (790)
Q Consensus 580 yLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i-~dS~--~Q~~al~~ii~tL~~~~~~~~e~ 638 (790)
||++|++|-..|+-+.+.+|+..|++..+|-. .|-. .-...+.-.|.-+.++-.|-+||
T Consensus 698 yl~~~qvaLl~~~lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 698 YLQNIQVALLANFLSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hhHHhHHHHHhChhhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 99999999999999999999999999998654 3332 22344445555555555554433
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.4e-14 Score=164.93 Aligned_cols=292 Identities=9% Similarity=-0.102 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhHHhHHHHHHHHhhcCCChhhHHHHHHHhcchhhHHHHHHHHhHHH
Q 003862 36 LRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (790)
Q Consensus 36 L~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~~~~l~dLYE~VQyagnIlPRLYLmItVG~~y 115 (790)
.+.+++++..+..+.++.-+.|+.|++.|+...+|...|..++..+.-++..+.++|+.+++.+++.|+||..|+++-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHhhcccChhHHHHHHHHHHHhhhccCCCCC--CCCCCCCCChhhhHHHHHHhHHHHHHHHHHH
Q 003862 116 IKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG--SEYEGDADTVNDAMEFVLQNFTEMNKLWVRM 193 (790)
Q Consensus 116 i~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~--s~~~~~~g~v~dsi~Fll~NF~EMNKLWVRl 193 (790)
.+.---.......+...||+|++||++|.+.+++..++++-++|..+ +.|+. .++-.|
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t-~~~e~~------------------- 287 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYAT-SENEVL------------------- 287 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHh-ccccCC-------------------
Confidence 99888888888999999999999999999999999999998888753 12210 001111
Q ss_pred hccCCchhhhhHHHHHHHHHHHhhhhhhhhhhccCCCHHHHhhhhchHHHHHHHhccchhhhhHhHhhhhhcCCcchhHH
Q 003862 194 QHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQ 273 (790)
Q Consensus 194 Qhqg~~rer~~R~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~ 273 (790)
| +..+++|+++++.++.+++...-|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 288 ----p------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~----- 346 (760)
T KOG1107|consen 288 ----P------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG----- 346 (760)
T ss_pred ----c------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC-----
Confidence 1 6677889999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 003862 274 TLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLT 353 (790)
Q Consensus 274 TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~ 353 (790)
.+|.+.-+. .+ ...|.--.+.+..+. +++.|..+.+.++++
T Consensus 347 ------~~~~~~~s~----------------------~~------~~~~s~~~k~l~~~L-----~~p~~~y~nvvtll~ 387 (760)
T KOG1107|consen 347 ------GSCINQLSS----------------------TG------KLADSPVTKELVALL-----SAPLEKYKNVLTLLK 387 (760)
T ss_pred ------CCcccccCc----------------------cc------cccccHHHHHHHHHH-----cchHHHHHhHHHHHH
Confidence 222111000 00 111221123333333 468888889999999
Q ss_pred HHHHhcCCCchhHHHH-HHHHHH-----HhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHH
Q 003862 354 FTLHVHPDRLDYADQV-LGACVK-----KLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVM 419 (790)
Q Consensus 354 l~l~~yp~~~~~vd~i-l~~~~~-----~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll 419 (790)
++..+++. +|.|.- ...++. ++......... ..|-+.|+.++.+++..+++++.
T Consensus 388 L~~~~~v~--~~~D~~~~~~ma~~i~q~~l~~~t~~~t~----------d~v~~l~~li~~likd~~~~~~~ 447 (760)
T KOG1107|consen 388 LSNYPKVM--EYLDYETRKNMASYIVQSILENNTVISTA----------DEVDSLFSLISGLIKDQDGQSAD 447 (760)
T ss_pred hhccCchh--HHhchHHHHHHHHHHHHHHHhhcceeehH----------hhHHHHHHHHHHHHhcCCCCCcc
Confidence 99888876 354432 222322 22211111111 13444455567777888887776
No 5
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.68 E-value=39 Score=40.98 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHHHHHcCCCchHHH
Q 003862 342 LGAVTLYSSLLTFTLHVH--PDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVM 419 (790)
Q Consensus 342 ~d~i~l~~sll~l~l~~y--p~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll 419 (790)
+..++|++-+...-...| +++-.|+..+.+.+.+.+.+.+...++..+.+++++|-.-=.+|. +-.+.+++.|++.+
T Consensus 273 ~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktNYQ-L~ELv~v~~Y~e~i 351 (1082)
T KOG1410|consen 273 ELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLKTNYQ-LGELVKVECYPEVI 351 (1082)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhhh-hHhhhccCCcHHHH
Confidence 355566665555544444 346778888888888898888888888889999999988888884 66678999999887
Q ss_pred hcC
Q 003862 420 EYV 422 (790)
Q Consensus 420 ~~l 422 (790)
.+.
T Consensus 352 rLi 354 (1082)
T KOG1410|consen 352 RLI 354 (1082)
T ss_pred HHH
Confidence 653
No 6
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=61.74 E-value=1.2e+02 Score=32.82 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=36.3
Q ss_pred hcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 003862 335 AQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLS 397 (790)
Q Consensus 335 ~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~ 397 (790)
..|++++..|+.+.+++-..+..++ |.++..+---|+.+... .+..-+.+++++.
T Consensus 195 ~D~~L~~~kF~~Lae~lP~~aR~~h-------D~LYrAID~YLk~Hp~l-s~~Er~~lC~~ld 249 (258)
T PF03000_consen 195 PDPNLKPSKFVALAEALPDSARPSH-------DGLYRAIDIYLKAHPGL-SEEERKRLCRLLD 249 (258)
T ss_pred CCCCCCHHHHHHHHHHCCHhhhhcc-------chHHHHHHHHHHHcccC-CHHHHHHHHhhCC
Confidence 4688999999999999988888754 45555554444444322 3334456777653
No 7
>PLN03217 transcription factor ATBS1; Provisional
Probab=56.34 E-value=7.4 Score=34.85 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCccccHHHHHHHHHHHHHHhccCC---CCCChhHHHHHHHHHHHHHHHhhh
Q 003862 729 GNTQINAAAIQSLIELITAEMQSES---NSPDPAADAFFASTLRYIQFQKQK 777 (790)
Q Consensus 729 ~~~~i~~~~in~Li~li~~~~~~~~---~~~~~~~~~~f~~t~~yI~~~~~~ 777 (790)
|...||.+-|+.||...+.-+.... .+......+-.+.||.||+.-...
T Consensus 13 ~s~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrE 64 (93)
T PLN03217 13 GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHRE 64 (93)
T ss_pred CCCCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence 4457999999999999999887622 122234566899999999976443
No 8
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.06 E-value=3.1e+02 Score=29.00 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=56.5
Q ss_pred HhhhhhcCCcchhHHhHHHHHhhcc--ccCCC--CCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHh
Q 003862 259 MDCIIQVFPDEYHLQTLEILLGAFP--QLQPS--VDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIE 334 (790)
Q Consensus 259 md~IiQvFPDefHl~TL~~lL~~~~--~l~~~--V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~ 334 (790)
+..+.+.||++|+. ||+++. ....+ +++...+...|++|-.-. .+... .
T Consensus 106 ~~~v~~~y~~k~~~-----FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~-------------------~~~~s---~ 158 (219)
T PF14677_consen 106 LSTVCQRYPDKFSQ-----FLSAIDMTDDNAEEEKDLTERIQFQIRQFQREL-------------------ENFLS---S 158 (219)
T ss_dssp HHHHHHTSGGGHHH-----HHHHTS----STTTT-HHHHHHHHHHHHHHHHH-------------------HHHHH---S
T ss_pred HHHHHHHhhHHHHH-----HHHHhccccCCccccccHHHHHHHHHHHHHHHH-------------------hhccc---c
Confidence 66778999998865 999764 22222 455555555555553211 11111 1
Q ss_pred hcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 003862 335 AQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALL 396 (790)
Q Consensus 335 ~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL 396 (790)
+..+...++++.++..+-.|+-..-|+.... +.++.-+.+.+++.. ..++...+.|++||
T Consensus 159 ~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~-~q~~~W~~~~ck~~~-l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 159 EEEDFNSKEAVLLVNILSQLSDHLDPSSDQF-TQMLSWTLKFCKENS-LEDSSFCKGLLSLL 218 (219)
T ss_dssp --SS--SHHHHHHHHHHHHHTTSS-SSSSHH-HHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHhcC-CCcHHHHHHHHHHh
Confidence 1122345566666666666666666755444 467777777777653 23444445555554
No 9
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=34.02 E-value=38 Score=35.57 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=50.3
Q ss_pred HHHHHHHhHHhHHHHHHHHhhc----C--CChhhHHHHHHHhcchhhHHHHHHHHhHHHhhcCCCchHHHHHHHHHHhhc
Q 003862 63 LYMRAFDELRKLEMFFKEETRR----G--CSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRG 136 (790)
Q Consensus 63 LYm~V~d~L~~L~~yl~~~~~~----~--~~l~dLYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRG 136 (790)
+++..+++|+.|.+||...+.+ | -.++|+ +++||||-+=+++.-|.-- +.|+ + -+|
T Consensus 124 ~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDc--------sLlPKL~~i~va~k~yk~~-~IP~-~--------lt~ 185 (221)
T KOG1422|consen 124 LEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADC--------SLLPKLHHIKVAAKHYKNF-EIPA-S--------LTG 185 (221)
T ss_pred HHHHHHHHHHHHHHHhcCccCCccccCCeeeeehh--------hhchhHHHHHHHHHHhcCC-CCch-h--------hhH
Confidence 3567888999999999975433 2 267888 9999999999999988643 3443 1 356
Q ss_pred ccChhHHHHHHHHHHH
Q 003862 137 IQHPVRGLFLRSYLSQ 152 (790)
Q Consensus 137 VQhPlRGLFLR~YL~q 152 (790)
|-.=+.++|.|-=+-+
T Consensus 186 V~rYl~~~ya~d~F~~ 201 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTN 201 (221)
T ss_pred HHHHHHHHHhHHHhhc
Confidence 6566666666654433
No 10
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.50 E-value=9e+02 Score=28.26 Aligned_cols=86 Identities=8% Similarity=0.087 Sum_probs=43.3
Q ss_pred ccccCHHHHHHHHHHHHHHHhcC--CCCCCCCCChhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-hccCCccc
Q 003862 443 TQISTADKVGALFELIKGLIRDL--DGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHI-LTGGPKRL 519 (790)
Q Consensus 443 ~~I~~~~~v~~ll~~~~~Li~d~--~~~~~~~~~~~e~~~eq~lvar~vhli~~~d~e~q~~~l~~~r~~f-~~gg~~ri 519 (790)
....++..+.+-..+++-++-.. .+.+ .-.+. -+..+..|...+..+++-..++++..++..+ ++.+..=.
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~~~~~~~-----~l~~~-~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~ 338 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGSGEQGYP-----SLPFS-PSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELS 338 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhccccCCcc-----eeccc-HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhc
Confidence 34556666655555555555433 1111 11111 2246666666677666666677777777777 54443223
Q ss_pred cccchHHHHHHHHHH
Q 003862 520 PFTVPPLVFSSLKLV 534 (790)
Q Consensus 520 ~~t~p~LV~~~l~L~ 534 (790)
......++..+.++.
T Consensus 339 ~~~W~~~~~i~~~~~ 353 (464)
T PF11864_consen 339 EEDWDIILDIIEEIF 353 (464)
T ss_pred ccCchHHHHHHHHHH
Confidence 334444443333333
No 11
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=30.40 E-value=6.5e+02 Score=27.94 Aligned_cols=153 Identities=12% Similarity=0.217 Sum_probs=86.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhhhhHH
Q 003862 329 IGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDR-LDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIV 407 (790)
Q Consensus 329 i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~-~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~ 407 (790)
+....+..|+.---++++++.++++=.-...++. ..-++.+|+.+...+.+.. ..-|+....+-++|...+.++- .
T Consensus 77 L~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~-~~yPe~r~~ff~LL~~i~~~~f--~ 153 (319)
T PF08767_consen 77 LGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF-EEYPEHRVNFFKLLRAINEHCF--P 153 (319)
T ss_dssp HHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS-SSSHHHHHHHHHHHHHHHHHHT--H
T ss_pred HHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-hhChHHHHHHHHHHHHHHHHhH--H
Confidence 3333444444445678888888887766655554 3345778888888886542 2346677889999999998873 4
Q ss_pred HHHcC--CCchHHHhcCCchhH---HH---HHHHHHHHHHhcCccccCHHHHHHHH---------HHHHHHHhcCCCCCC
Q 003862 408 TVLKL--SNYPSVMEYVDSETN---KV---MAMVIIQSIMKNNTQISTADKVGALF---------ELIKGLIRDLDGAAH 470 (790)
Q Consensus 408 ~vL~l--~~f~~Ll~~l~~~~r---~~---va~~Il~~~l~~~~~I~~~~~v~~ll---------~~~~~Li~d~~~~~~ 470 (790)
.++++ +.|..+++.+-|..+ +. .+..++..++++-.. .+++....++ ++..+|. |..
T Consensus 154 ~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~il~~if~vlt-D~~---- 227 (319)
T PF08767_consen 154 ALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDILQDIFSVLT-DSD---- 227 (319)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHH-STT----
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH-Ccc----
Confidence 55555 447777776655443 33 344444444442111 4455444433 2223332 211
Q ss_pred CCCChhhHHHHHHHHHHHHHhhc
Q 003862 471 DQVDEDDFKEEQNSVARLIQMLQ 493 (790)
Q Consensus 471 ~~~~~~e~~~eq~lvar~vhli~ 493 (790)
-...|......+++++.++.
T Consensus 228 ---Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 228 ---HKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp ----GGGHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHHHH
Confidence 12356666677777777665
No 12
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=27.16 E-value=2.5e+02 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 003862 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLS 378 (790)
Q Consensus 319 ~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~ 378 (790)
..++ ...++..++++ .+++|+|++.+..+.+. ..+|+-.+.+..-|.+..+.+.
T Consensus 18 ~~L~-~~~~~~r~~i~--~~I~PEeIv~iH~~~v~---~l~~~~~~~v~~sld~LlEvm~ 71 (77)
T PF08673_consen 18 QSLY-QAQEFGRELIE--KDISPEEIVEIHKSAVQ---ELSPSLPEDVLDSLDFLLEVMI 71 (77)
T ss_dssp HHHH-HHHHHHHHHHH--TT--HHHHHHHHHHHHH---HH-TTS-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH--cCCCHHHHHHHHHHHHH---HHccccHHHHHHHHHHHHHHHH
Confidence 4566 78888889988 48999999999988765 5556656667777776666554
No 13
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=27.07 E-value=50 Score=25.57 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.9
Q ss_pred HhhhhhcCCcchhHHhHHHHHhhcc
Q 003862 259 MDCIIQVFPDEYHLQTLEILLGAFP 283 (790)
Q Consensus 259 md~IiQvFPDefHl~TL~~lL~~~~ 283 (790)
+|.+..+|| +-.-.+|+.+|..|.
T Consensus 5 idiL~rvFP-~~kr~~Le~iL~~C~ 28 (39)
T PF03474_consen 5 IDILTRVFP-HQKRSVLELILQRCN 28 (39)
T ss_pred HHHHHHHCC-CCChHHHHHHHHHcC
Confidence 688999999 667789999999995
No 14
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.13 E-value=1.2e+03 Score=27.25 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=114.9
Q ss_pred CchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHH---------------HH
Q 003862 423 DSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSV---------------AR 487 (790)
Q Consensus 423 ~~~~r~~va~~Il~~~l~~~~~I~~~~~v~~ll~~~~~Li~d~~~~~~~~~~~~e~~~eq~lv---------------ar 487 (790)
|-..|.+.+..+.+.+-+. ++ +.+..+...++-|+.... |. +.....-+++ +.
T Consensus 3 ~l~~R~~a~~~l~~~i~~~--~~---~~i~~iW~~~~DLi~~~~--p~-----e~R~~~~~ll~~~i~~~~~~~~~~R~~ 70 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKY--PL---SSIEEIWYAAKDLIDPNQ--PS-----EARRAALELLIACIKRQDSSSGLMRAE 70 (464)
T ss_pred CHHHHHHHHHHHHHHHHhC--Cc---hHHHHHHHHHhhhcCCCC--CH-----HHHHHHHHHHHHHHHccccccHHHHHH
Confidence 3456778888888887532 23 667777888888874321 11 1111111111 24
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHH---HHHHHH-------HHHHhcCC-CCCCCCCC-----CCC
Q 003862 488 LIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPL---VFSSLK-------LVRQLQGP-EENPFGEE-----GST 551 (790)
Q Consensus 488 ~vhli~~~d~e~q~~~l~~~r~~f~~gg~~ri~~t~p~L---V~~~l~-------L~~~~~~~-~~~~~~~~-----~~~ 551 (790)
|.+.|.....+.-|.....+=+.+.++| +.|.+....+ +...+. .+|..... +....... ...
T Consensus 71 fF~~I~~~~~~~d~~~~l~aL~~LT~~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (464)
T PF11864_consen 71 FFRDISDPSNDDDFDLRLEALIALTDNG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEES 149 (464)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhh
Confidence 4555553222233445555556677778 5666643333 332221 12222111 00000000 011
Q ss_pred ChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhc
Q 003862 552 TPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRM 631 (790)
Q Consensus 552 ~~kk~f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~ 631 (790)
....+|+|+..||+.-... ..+..+.-.+..+-.. |...+...+ ++.++.++.-=|.-+..--+++..+|.+|+++
T Consensus 150 ~l~~ll~~l~nviKfn~~~-l~e~~i~~lv~~i~~i--C~~Ts~~~d-i~~~L~vldaii~y~~iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNY-LDEDEISSLVDQICTI--CKSTSSEDD-IEACLSVLDAIITYGDIPSESLSPCIEVLCSI 225 (464)
T ss_pred hHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHH--HhccCcHHH-HHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH
Confidence 2358899999998886432 1222333333322111 222222222 24555555433333333345666667777766
Q ss_pred cCCC---ccchHHHHHHH----HHHHH----hcc--Cchhh------HH-HHHHhhhhcCCCCCCC----ccchhHHHHH
Q 003862 632 HVFG---VENRDTLTHKA----TGYSA----KLL--KKPDQ------CR-AVYACSHLFWVDDQDN----MKDGERVLLC 687 (790)
Q Consensus 632 ~~~~---~e~y~~L~~k~----~~~as----kLL--kK~dQ------cr-av~~cshL~w~~~~~~----~~d~krVleC 687 (790)
-+.. +..+.++..-| ...+- .+| ..+.+ +| ||..=..+.|....+. ....--|+..
T Consensus 226 ~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~s 305 (464)
T PF11864_consen 226 VNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPS 305 (464)
T ss_pred hcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHH
Confidence 4432 22333332222 11111 133 22222 32 4555566777652111 1223348888
Q ss_pred HHHHHH
Q 003862 688 LKRALR 693 (790)
Q Consensus 688 Lqkslk 693 (790)
|++|++
T Consensus 306 l~~al~ 311 (464)
T PF11864_consen 306 LLNALK 311 (464)
T ss_pred HHHHHh
Confidence 888888
No 15
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=23.32 E-value=1.5e+02 Score=29.56 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhc-CCCCchhhhHHHHHH----HHhHHhHHHHHHHH
Q 003862 36 LRDALKYSAQMLSELRT-SKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (790)
Q Consensus 36 L~~ALkhas~mL~ELRt-s~LsPk~YYeLYm~V----~d~L~~L~~yl~~~ 81 (790)
-|.-+.---.+|.+||. ..+.|..|-+||+++ |...++|-+|+.+.
T Consensus 95 Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 95 WIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 34445555668888875 789999999999997 88999999998874
No 16
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=23.03 E-value=1.3e+02 Score=25.83 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 003862 323 SKLNNAIGKVIEAQ-ADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 371 (790)
Q Consensus 323 ~~f~~~i~~l~~~~-~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~ 371 (790)
+.|++.+.+..+.+ +.+++.+.+.+.-|+.- +.+||.+ ++++||.
T Consensus 19 ~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~--l~~~p~~--~l~~vf~ 64 (71)
T PF06743_consen 19 EEFFEKLIERLESYLDEFSPEDLLDLVWSLCL--LQRFPED--LLNKVFS 64 (71)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--HhhCCHH--HHHHHcC
Confidence 33455555555544 78899999999988864 6788876 8888875
No 17
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=22.68 E-value=2.8e+02 Score=25.57 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcc-cChhHHHHHHHHHHHhhhccCCCC
Q 003862 125 DVLKDLVEMCRGI-QHPVRGLFLRSYLSQISRDKLPDI 161 (790)
Q Consensus 125 eiLkDLvEMcRGV-QhPlRGLFLR~YL~q~~k~~LPd~ 161 (790)
.-|++|.+||..- -..+|.| .-.=|+.+.||.+|+-
T Consensus 24 ~~lk~l~~~~~~~~~~~v~kL-a~lSl~~VFkDIiPgY 60 (95)
T PF07540_consen 24 GSLKRLLKLCESKVDVTVRKL-AILSLLAVFKDIIPGY 60 (95)
T ss_pred HHHHHHHHHHhccchHHHHHH-HHHHHHHHHhhcCCCc
Confidence 3499999999998 4445554 5666777889999985
No 18
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.72 E-value=2.3e+03 Score=31.78 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=63.4
Q ss_pred HhhhhhcCCcchhHH---hHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhh
Q 003862 259 MDCIIQVFPDEYHLQ---TLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEA 335 (790)
Q Consensus 259 md~IiQvFPDefHl~---TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~ 335 (790)
+.+++-+-|-++-.. .+.-+|+.|.+- ...++-..++.++.|+-+=.....+... -....++..||+.+.++.+.
T Consensus 1958 l~~v~~~~~~~~i~~n~~~vq~~le~cl~~-~~~~v~~~~~~~l~~~~~~~~~~~~e~e-~~~~~v~~~i~~~l~s~~~~ 2035 (3550)
T KOG0889|consen 1958 LSVVLENVPKEWIRENLNQIQALLEKCLKS-GNLKVTEALNQLLSRLLSIFPNTHESLE-LLYQVVSKLIDELLTSVTTV 2035 (3550)
T ss_pred HHHHHhcCCcHHHHHhHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhcCCCchhHH-HHhhHHHHHHHhhhhheecc
Confidence 445555555555433 445566677644 5566666677776666533221111001 11356788999999998874
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 003862 336 QADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKL 377 (790)
Q Consensus 336 ~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l 377 (790)
. ......+.+.+-+.-.+..++.+|+|.++.....-+
T Consensus 2036 ~-----~~~~~~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~ 2072 (3550)
T KOG0889|consen 2036 P-----LQLASNVFGTLTLLKTLCSNNPDYLDRLLPGFMRCF 2072 (3550)
T ss_pred c-----ccchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 222222233455555667788889998887655533
No 19
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=20.69 E-value=3.6e+02 Score=24.80 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=44.2
Q ss_pred hhhhhhccCCCHHHHhhhhchHHHHHHHhccchhhhhHhHhhhhhcCCcchhH
Q 003862 220 LHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHL 272 (790)
Q Consensus 220 LvrLSqLegv~~~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl 272 (790)
+..+.--+|-+++.|-..+-- |..++-.|+.++.-+.++..|+..+|++|+-
T Consensus 32 l~~~k~~~~~sv~~y~~~~~~-i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~ 83 (119)
T PF14223_consen 32 LENLKMKDGESVDEYISRLKE-IVDELRAIGKPISDEDLVSKILRSLPPSYDT 83 (119)
T ss_pred HHHHHhcccccHHHHHHHHHH-hhhhhhhcCCcccchhHHHHHHhcCCchhHH
Confidence 344444568899999998775 7799999999999999999999999999965
No 20
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=20.03 E-value=1.8e+02 Score=32.96 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=48.2
Q ss_pred HhHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003862 273 QTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (790)
Q Consensus 273 ~TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~~~~~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll 352 (790)
.||.+-|+-+....|...|..+|..||...+ +..=|-.||-+..+|....+ |++++|++++.-+
T Consensus 104 ~tlsECl~Li~eGcp~eei~~~L~~li~~IP--------------~A~K~aKYWIC~Arl~~~~~--~~e~vi~iyEeAi 167 (353)
T PF15297_consen 104 KTLSECLNLIEEGCPKEEILATLSDLIKNIP--------------DAKKLAKYWICLARLEPRTG--PIEDVIAIYEEAI 167 (353)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 3666666666677777778888887776654 24569999999999998655 4589999998554
Q ss_pred H
Q 003862 353 T 353 (790)
Q Consensus 353 ~ 353 (790)
.
T Consensus 168 ~ 168 (353)
T PF15297_consen 168 L 168 (353)
T ss_pred H
Confidence 4
Done!