Query 003862
Match_columns 790
No_of_seqs 134 out of 230
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r17_C Vacuolar protein sortin 100.0 2.7E-91 9.3E-96 743.0 20.3 289 477-774 1-298 (298)
2 3ro3_A PINS homolog, G-protein 78.2 25 0.00084 30.3 11.8 135 555-697 27-161 (164)
3 3q15_A PSP28, response regulat 55.8 1.9E+02 0.0065 29.8 15.5 137 557-700 121-257 (378)
4 3ro3_A PINS homolog, G-protein 55.1 98 0.0033 26.3 14.3 120 572-699 4-123 (164)
5 3edt_B KLC 2, kinesin light ch 49.7 1.7E+02 0.0059 27.6 14.1 142 592-748 16-160 (283)
6 3gw4_A Uncharacterized protein 46.9 1.6E+02 0.0056 26.5 15.2 138 555-700 44-182 (203)
7 2hye_C Cullin-4A, CUL-4A; beta 43.8 4.7E+02 0.016 30.9 23.5 27 232-258 225-251 (759)
8 3sf4_A G-protein-signaling mod 42.5 2.8E+02 0.0096 27.9 17.2 138 555-700 205-342 (406)
9 3u3w_A Transcriptional activat 41.2 2.7E+02 0.0094 27.5 19.4 186 487-700 81-272 (293)
10 3ro2_A PINS homolog, G-protein 41.1 2.5E+02 0.0086 27.0 18.7 220 494-747 56-295 (338)
11 4a1s_A PINS, partner of inscut 38.5 3.4E+02 0.011 27.7 15.9 138 555-700 241-378 (411)
12 4ap2_B Cullin-3, CUL-3; ubiqui 37.1 4.4E+02 0.015 28.6 17.7 63 31-105 25-93 (410)
13 3ulq_A Response regulator aspa 37.0 3.6E+02 0.012 27.6 22.3 117 577-700 143-259 (383)
14 3ulq_A Response regulator aspa 36.9 3.6E+02 0.012 27.6 22.8 186 491-700 113-299 (383)
15 3opb_A SWI5-dependent HO expre 35.2 6.5E+02 0.022 30.1 16.9 237 244-508 138-402 (778)
16 3q15_A PSP28, response regulat 31.6 4.4E+02 0.015 27.0 20.4 200 479-698 10-215 (378)
17 1bl1_A Parathyroid hormone rec 30.9 13 0.00046 26.2 0.6 15 100-114 15-29 (31)
18 4hat_C Exportin-1; heat repeat 30.9 8.2E+02 0.028 29.9 17.2 43 555-597 823-867 (1023)
19 1qqe_A Vesicular transport pro 29.8 4.2E+02 0.014 26.2 12.5 113 573-696 33-149 (292)
20 2ifu_A Gamma-SNAP; membrane fu 29.8 4.3E+02 0.015 26.3 14.3 56 572-628 31-86 (307)
21 3nf1_A KLC 1, kinesin light ch 24.4 4.7E+02 0.016 25.0 16.6 159 574-747 66-227 (311)
22 3nf1_A KLC 1, kinesin light ch 23.9 4.8E+02 0.016 24.9 16.3 157 576-747 26-185 (311)
23 1w53_A Phosphoserine phosphata 22.8 2.5E+02 0.0086 24.1 7.2 54 320-378 25-78 (84)
24 4a1s_A PINS, partner of inscut 21.6 6.4E+02 0.022 25.5 18.7 136 557-700 203-338 (411)
25 3ut4_A CTHE_2751, putative unc 21.1 2.4E+02 0.0081 26.4 7.2 38 232-270 56-93 (134)
26 3zth_A STU0660; DNA binding, c 20.4 1.1E+02 0.0038 32.7 5.3 112 242-358 86-229 (350)
No 1
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-91 Score=742.99 Aligned_cols=289 Identities=42% Similarity=0.708 Sum_probs=268.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHH
Q 003862 477 DFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKV 556 (790)
Q Consensus 477 e~~~eq~lvar~vhli~~~d~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~L~~~~~~~~~~~~~~~~~~~~kk~ 556 (790)
||.+||++|||+||+++++|||+||++|..+|+||++||++|++||+|||||++|+|+|+++..+..++.|+ ..++++
T Consensus 1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~--~~~~ki 78 (298)
T 2r17_C 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWE--KKCQKI 78 (298)
T ss_dssp CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHH--HHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999987654333332 345899
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCC---ccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccC
Q 003862 557 FQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDL---EPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHV 633 (790)
Q Consensus 557 f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~---~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~ 633 (790)
|+|||++|+.|...+.|+++|||||+||++||++|+ +++|||||+|||+||||+|+|||+|++||.+|||||+++|+
T Consensus 79 f~fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~ 158 (298)
T 2r17_C 79 FSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKC 158 (298)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccC
Confidence 999999999996446799999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCC-----CCCCccchhHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003862 634 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVD-----DQDNMKDGERVLLCLKRALRIANAAQQMSNATRGS 708 (790)
Q Consensus 634 ~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~-----~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~ 708 (790)
|++||||+|+||||+||||||||||||||||+||||||++ +++.+||||||+|||||||||||+||| +
T Consensus 159 f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d-------~ 231 (298)
T 2r17_C 159 FSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------P 231 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC-------H
T ss_pred CCHhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC-------h
Confidence 9999999999999999999999999999999999999984 234689999999999999999999999 8
Q ss_pred CccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHHHhcc-CCCCCChhHHHHHHHHHHHHHHH
Q 003862 709 TGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAEMQS-ESNSPDPAADAFFASTLRYIQFQ 774 (790)
Q Consensus 709 ~~~~~L~veiLn~~ly~~~~~~~~i~~~~in~Li~li~~~~~~-~~~~~~~~~~~~f~~t~~yI~~~ 774 (790)
.++++|||||||+|+|||++||++||++||||||++|++|+.+ +++++.++++.||+||++||+.|
T Consensus 232 ~~~v~LfveILn~ylyff~~g~~~Vt~~~in~LI~lI~~~l~~~~~~~~~~~~~~~f~~tl~yI~~~ 298 (298)
T 2r17_C 232 SLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHHHHTTTTSSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHhhhhCCCCcccHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999976 44555689999999999999854
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=78.23 E-value=25 Score=30.33 Aligned_cols=135 Identities=11% Similarity=0.076 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCC
Q 003862 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (790)
Q Consensus 555 k~f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~ 634 (790)
+-.++....+........+......+..-|.+....|--+-|.++|.+|+.++++. .+...+..+...+.........+
T Consensus 27 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 105 (164)
T 3ro3_A 27 DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY 105 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444443223455556677777777777888888899999999999753 55555555555544444343221
Q ss_pred CccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHH
Q 003862 635 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANA 697 (790)
Q Consensus 635 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~ 697 (790)
+.-.....++...+.+.-..+..+.+...-+.+++.. .+.+...+++++|++++.+
T Consensus 106 --~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 106 --EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-----GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHH
Confidence 1112222333333333333455566666666666633 4578899999999998864
No 3
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=55.80 E-value=1.9e+02 Score=29.83 Aligned_cols=137 Identities=11% Similarity=0.070 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCc
Q 003862 557 FQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGV 636 (790)
Q Consensus 557 f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~ 636 (790)
..+....+.....+..+...-..|..-|.+--..|.-+-|.+++.+|+.++++.-........+...+.........+.+
T Consensus 121 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 200 (378)
T 3q15_A 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200 (378)
T ss_dssp HHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHH
Confidence 33333333333333344455566666677777778888888999999999986543344455555555444444333211
Q ss_pred cchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 637 ENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 637 e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
-...-.++...+.+.=..+..+.+...-+.+++. ..+-..-++++++|++++....+
T Consensus 201 --A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 201 --ALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-----SGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHCG
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHhhCC
Confidence 1112223333333332233445555555666653 24578899999999998877654
No 4
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=55.15 E-value=98 Score=26.31 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Q 003862 572 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSA 651 (790)
Q Consensus 572 ~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~as 651 (790)
++......+..-|.+.-..|--+-|-+.|.+|+.++++ ..+......+...+.........+ +.-.....++...+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLAR 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 45555666777777776777777788889999998885 455555555555555444443222 111222233333333
Q ss_pred hccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 003862 652 KLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQ 699 (790)
Q Consensus 652 kLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~ 699 (790)
+.-..+.++.+.+.-+.+++.. .+-+...++++++++++...-
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLL-----QDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCcHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHcc
Confidence 3333344566666666666633 457889999999999987653
No 5
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=49.69 E-value=1.7e+02 Score=27.57 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=83.1
Q ss_pred CccHHHHHHHHHHHhchhccc-CcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhc--cCchhhHHHHHHhhh
Q 003862 592 LEPVAYEFFTQAYILYEEEIS-DSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKL--LKKPDQCRAVYACSH 668 (790)
Q Consensus 592 ~~~iayeFf~qAf~iyEE~i~-dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askL--LkK~dQcrav~~csh 668 (790)
-.+-|-++|.+|+.+++.... +......++..+.........+. .-.....++...+.+. -..++.+++...-+.
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK--EAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344566889999999987664 33555666666555554433321 1122222333333333 334677777777777
Q ss_pred hcCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCCccccHHHHHHHHHHHHHH
Q 003862 669 LFWVDDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQINAAAIQSLIELITAE 748 (790)
Q Consensus 669 L~w~~~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~i~~~~in~Li~li~~~ 748 (790)
+++.. .+-+..+++++++++++..... +. .-....-..+....|+..|...=..+++...+++.+..
T Consensus 94 ~~~~~-----g~~~~A~~~~~~al~~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 94 LYGKR-----GKYKEAEPLCKRALEIREKVLG-------KF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHTT-----TCHHHHHHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----ccHHHHHHHHHHHHHHHHHHcC-------CC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 77744 4678999999999999877754 21 11111222344445566666666666677766665443
No 6
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=46.88 E-value=1.6e+02 Score=26.51 Aligned_cols=138 Identities=10% Similarity=-0.042 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcH-HHHHHHHHHHHHHhhccC
Q 003862 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSR-AQVTAIHLIIGTLQRMHV 633 (790)
Q Consensus 555 k~f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~-~Q~~al~~ii~tL~~~~~ 633 (790)
+-..+..+.+........+......+..-|.+....|-.+-|.++|.+|+.+++ ...|.. ....++..+..+......
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555544445556666777777888788888888899999999998 555443 445555554444444322
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 634 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 634 ~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
+ +.-.....+....+.+.=.....+.+...-+.+++.. .+.....+++++|++++...-+
T Consensus 123 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 123 L--AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-----KNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHHHHHHcCC
Confidence 1 1122222333333333333344556666667777643 3578899999999999987654
No 7
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=43.83 E-value=4.7e+02 Score=30.92 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.3
Q ss_pred HHHhhhhchHHHHHHHhccchhhhhHh
Q 003862 232 DTYKETVLPRVLEQVVNCKDEIAQCYL 258 (790)
Q Consensus 232 ~~Y~~~iLP~iLeqIv~c~D~~AQeYL 258 (790)
+.|.+.+.|.+|+..-..=-..||+|+
T Consensus 225 ~vY~~~FE~~fL~~T~~fY~~e~~~~l 251 (759)
T 2hye_C 225 QVYKDSFELKFLEETNCLYAAEGQRLM 251 (759)
T ss_dssp TCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999888886554444445444
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=42.51 E-value=2.8e+02 Score=27.92 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCC
Q 003862 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (790)
Q Consensus 555 k~f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~ 634 (790)
+-.++...++........+......+..-|.+....|-.+-|.+.+.+|+.+.++ ..+......++..+...+.....+
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CcCchHHHHHHHHHHHHHHHhCcH
Confidence 4455555555555433445555667777777777788888888999999999885 345555566666655555443322
Q ss_pred CccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 635 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 635 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
+.-.....++...+.+.-..+....+...-+.+++.. .+.+...+++++|++++...-+
T Consensus 284 --~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 342 (406)
T 3sf4_A 284 --EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-----GNHDQAMHFAEKHLEISREVGD 342 (406)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcC
Confidence 2222233333333344444555677777777777743 4678999999999999887643
No 9
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=41.25 E-value=2.7e+02 Score=27.47 Aligned_cols=186 Identities=9% Similarity=-0.024 Sum_probs=101.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccchHH--HHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 003862 487 RLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPL--VFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTI 564 (790)
Q Consensus 487 r~vhli~~~d~e~q~~~l~~~r~~f~~gg~~ri~~t~p~L--V~~~l~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i 564 (790)
.+.+.+...+.+.-.+++..+.+... ..|.. ...+......+....+ ...+-.++....+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~---------~~~~~~~~~~~~~~l~~~~~~~~---------~~~~Ai~~~~~al 142 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE---------YHPEFQQFLQWQYYVAAYVLKKV---------DYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC---------CCHHHHHHHHHHHHHHHHHTTSS---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc---------CChHHHHHHHHHHHHHHHHHccc---------CHHHHHHHHHHHH
Confidence 35556667788777777766654211 11221 1222221222221111 1134455555555
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHH
Q 003862 565 ETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTH 644 (790)
Q Consensus 565 ~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~ 644 (790)
...............|..-|.+-...|--+-|.++|.+|+.++++.-.+......++..+..++.+.. +|+. +.
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-----~y~~-A~ 216 (293)
T 3u3w_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-----RYEE-SL 216 (293)
T ss_dssp HTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-----CHHH-HH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-----HHHH-HH
Confidence 53222233344556666777777777777888899999999987643455555556666555554433 3332 22
Q ss_pred HHHHHHHhcc----CchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 645 KATGYSAKLL----KKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 645 k~~~~askLL----kK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
.....|-++. .......+.+.-+..++... ++-+..++++++|+.+++..-+
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLE----YEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCC
Confidence 2222233332 22334666666676666331 1237899999999999996533
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=41.13 E-value=2.5e+02 Score=27.01 Aligned_cols=220 Identities=10% Similarity=-0.037 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCH
Q 003862 494 NDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAP 573 (790)
Q Consensus 494 ~~d~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~L~~~~~~ 573 (790)
..+++.-.+.+..+.+.....+. -|..+.....++........ ..+-..+....+........+
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGD------QLGEAKASGNLGNTLKVLGN----------FDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHHHHHhcCc
Confidence 44666667777666655554442 34444445555554432211 134455555555554433344
Q ss_pred HHHHHHHHHHHHHhhhCCC--------------------ccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccC
Q 003862 574 ELALRLYLQCAEAANDSDL--------------------EPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHV 633 (790)
Q Consensus 574 ~~~lkLyLq~A~vAd~~~~--------------------~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~ 633 (790)
......+..-|.+-...|. -+-|.+.+.+|+.++++ ..+......+...+.........
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA-LGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhCC
Confidence 4445555555555544444 44555666666666553 23444444555554444433322
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHh
Q 003862 634 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVT 713 (790)
Q Consensus 634 ~~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~ 713 (790)
+. .-.....++...+.+.-..+....+.+.-+.+++.. .+.+...++++++++++...-+ +.....
T Consensus 199 ~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~-------~~~~~~ 264 (338)
T 3ro2_A 199 FR--DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----GEFETASEYYKKTLLLARQLKD-------RAVEAQ 264 (338)
T ss_dssp HH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC-------HHHHHH
T ss_pred HH--HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhhcc-------hhHHHH
Confidence 21 112222233333333333444455555556665532 4578899999999998876422 111111
Q ss_pred hHHHHHhhhhhhhccCCccccHHHHHHHHHHHHH
Q 003862 714 LFVEILNKYLYFFEKGNTQINAAAIQSLIELITA 747 (790)
Q Consensus 714 L~veiLn~~ly~~~~~~~~i~~~~in~Li~li~~ 747 (790)
. ..+....|+..|...=-.++.+..+++...
T Consensus 265 ~---~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 265 S---CYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp H---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 123344455666665556666666666544
No 11
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=38.54 E-value=3.4e+02 Score=27.70 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCC
Q 003862 555 KVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVF 634 (790)
Q Consensus 555 k~f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~ 634 (790)
+-.++....+........+......+..-|.+.-..|--+-|.+.|.+|+.+.++. .+......++..+...+.....+
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 44445555554443222344455566666777777787788889999999998854 55555556666655555443332
Q ss_pred CccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 635 GVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 635 ~~e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
+.-.....++...+.+.-..+...++...-+.+++.. .+.+..++++++|++++...-+
T Consensus 320 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 320 --NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI-----GGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhhccc
Confidence 2222233344434444434555666666677777743 4678999999999999988876
No 12
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=37.13 E-value=4.4e+02 Score=28.62 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=37.5
Q ss_pred hchhcHHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhHHhHHHHHHHHhhcCCChhhHHHHHH-----Hhc-chhhH
Q 003862 31 LDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQ-----HAG-NILPR 104 (790)
Q Consensus 31 ld~~~L~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~~~~~~~~~l~dLYE~VQ-----yag-nIlPR 104 (790)
++.+.+-+.|..-..-+.+.=+..-++-.|-+||-.|.+-..+ +.-.+||+.++ |.. ++.|+
T Consensus 25 ~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~------------k~g~~LY~~l~~~~~~~l~~~v~~~ 92 (410)
T 4ap2_B 25 MDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLH------------KHGEKLYTGLREVVTEHLINKVRED 92 (410)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444333444334444566799999988886542 23457888665 554 88888
Q ss_pred H
Q 003862 105 L 105 (790)
Q Consensus 105 L 105 (790)
+
T Consensus 93 l 93 (410)
T 4ap2_B 93 V 93 (410)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=37.03 E-value=3.6e+02 Score=27.59 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhccCc
Q 003862 577 LRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKK 656 (790)
Q Consensus 577 lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askLLkK 656 (790)
-..|..-|.+-...|--+-|.++|.+|+.++++.-........++..+.........+. .-...-.++...+.+.=..
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~~~~~~~ 220 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE--DAISHFQKAYSMAEAEKQP 220 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHcCCh
Confidence 34444444444556777788899999999999763325555566666555554433321 1112222233333333234
Q ss_pred hhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 657 PDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 657 ~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
+..+.+...-+.+++.. .+-..-++++++|++++...-+
T Consensus 221 ~~~~~~~~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 221 QLMGRTLYNIGLCKNSQ-----SQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhcc
Confidence 44555666666666633 4678889999999998766543
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=36.89 E-value=3.6e+02 Score=27.57 Aligned_cols=186 Identities=11% Similarity=-0.007 Sum_probs=111.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCC
Q 003862 491 MLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGV 570 (790)
Q Consensus 491 li~~~d~e~q~~~l~~~r~~f~~gg~~ri~~t~p~LV~~~l~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~L~~~ 570 (790)
.....+.+.-++.+..+-+.+.+.+. -|........++.-...... ..+-.++....+......
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKD------RIEKAEFFFKMSESYYYMKQ----------TYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCC------HHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCC------HHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhC
Confidence 34456677777777666655554442 22234444555554442211 134556666666665443
Q ss_pred CC-HHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Q 003862 571 PA-PELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGY 649 (790)
Q Consensus 571 ~~-~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~ 649 (790)
.. .......+..-|.+-...|--+-|-+.|.+|+.++++. .|......++..+.........+ +.-.....++...
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~--~~A~~~~~~al~~ 253 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQY--EDAIPYFKRAIAV 253 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH
Confidence 32 44445666666677777788888889999999999855 56665555655544444333221 1122222333333
Q ss_pred HHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 650 SAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 650 askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
+.+.-.+|....+...-+.+++.. .+-+...+++++|++++...-+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKL-----GKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhccchhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHcCC
Confidence 334444588888888888888844 4678999999999999977544
No 15
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=35.24 E-value=6.5e+02 Score=30.06 Aligned_cols=237 Identities=14% Similarity=0.197 Sum_probs=115.0
Q ss_pred HHHHhccchhhhhHhHhhhhhc-------CCcchhHHhHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHhhccCCCchh
Q 003862 244 EQVVNCKDEIAQCYLMDCIIQV-------FPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF 316 (790)
Q Consensus 244 eqIv~c~D~~AQeYLmd~IiQv-------FPDefHl~TL~~lL~~~~~l~~~V~i~~Il~sLi~RL~~y~~~~~~~i~~~ 316 (790)
.+.+.-.+...-.|++-|+.|+ ||| .++ ++.-+.--....+++.++--..-++..-.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~-----l~~~~~~~~~~~~~~~~~l~i~~~~~~~~---------- 201 (778)
T 3opb_A 138 QIRIHYGEDTHVTYLLSIILQLLNKFKYNFKE-VRF-----LVKELILRISEDEVKSMMLIIFAELQSSF---------- 201 (778)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCCCSTT-TTH-----HHHHHHTTTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHhhcCCCcchhHHHHHHHHHHHHcCccccc-hhh-----HHHHhccccChhhhHHHHHHHHHHHHHhC----------
Confidence 5556644444889999999985 666 444 55554433334456665544444443211
Q ss_pred hhHHHHHHHHHHHHHH-HhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHH------HHHHHhcCCCCCCChHHH
Q 003862 317 LQVEAFSKLNNAIGKV-IEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG------ACVKKLSGEGKLEDNRAT 389 (790)
Q Consensus 317 ~~~~lF~~f~~~i~~l-~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~------~~~~~l~~~~~~~~~~~~ 389 (790)
..+-.+.|-+++..+ +++.++..-++++..+..+ ..+||=-++--..+|- ...+++... .+....
T Consensus 202 -~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l----~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~---~~~~~~ 273 (778)
T 3opb_A 202 -QKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTL----SELYPSLTTLCSEIFLTKGLSKLFKKRVFEE---QDLQFT 273 (778)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHH----HHHTTTTHHHHHHHHSTTTHHHHHHHHHHSS---CCHHHH
T ss_pred -chHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHH----HHHhcCCHHHHHHHHccccHHHHHHHHHhcc---cchHHH
Confidence 123455677888844 4554444444444433332 3467754443333321 223333221 123333
Q ss_pred HHHHHHHHchhhhhhhHHHHHcCCCchHHHh-cCCchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhcCCCC
Q 003862 390 KQIVALLSAPLDKYNDIVTVLKLSNYPSVME-YVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGA 468 (790)
Q Consensus 390 ~~l~~lL~~pl~~~~~~~~vL~l~~f~~Ll~-~l~~~~r~~va~~Il~~~l~~~~~I~~~~~v~~ll~~~~~Li~d~~~~ 468 (790)
..+..+|..--..- .....+ .++|.+.+. .+..+.-+..|.-++-++...... ....+..+.+.+...+...+..
T Consensus 274 ~a~L~lLsaACi~~-~cR~~I-~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~--~~~si~~La~~~~~~L~~~~~~ 349 (778)
T 3opb_A 274 KELLRLLSSACIDE-TMRTYI-TENYLQLLERSLNVEDVQIYSALVLVKTWSFTKL--TCINLKQLSEIFINAISRRIVP 349 (778)
T ss_dssp HHHHHHHHHHCCSH-HHHHHH-HHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTC--TTCCHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHhCCc-HHHHHH-HHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC--CcCcHHHHHHHHHHHHhcCCcc
Confidence 44555554422111 011111 233333322 222222244555555554432111 1123344666666655442211
Q ss_pred ------------CCCCCChhhHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHH
Q 003862 469 ------------AHDQVDEDDFKEEQNSVARLIQMLQN-DDTEEMFKIICTVR 508 (790)
Q Consensus 469 ------------~~~~~~~~e~~~eq~lvar~vhli~~-~d~e~q~~~l~~~r 508 (790)
..+...-+.+++.|..+-+++.++.. .|...++..+..+-
T Consensus 350 ~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~ 402 (778)
T 3opb_A 350 KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402 (778)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 01112346788899999999999984 67677777766654
No 16
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=31.59 E-value=4.4e+02 Score=26.96 Aligned_cols=200 Identities=12% Similarity=0.045 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCC-ccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHH
Q 003862 479 KEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGP-KRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVF 557 (790)
Q Consensus 479 ~~eq~lvar~vhli~~~d~e~q~~~l~~~r~~f~~gg~-~ri~~t~p~LV~~~l~L~~~~~~~~~~~~~~~~~~~~kk~f 557 (790)
.+...++-.+-+.|...|.++-.+++.++.+.+.+... ..+.+-+--+-|..--+.......+.... .......+
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~----~~~~~~~l 85 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGN----RPTVTELL 85 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCccccccc----ccchHHHH
Confidence 34677888888888899999999999999988887642 11111111111111111111111110000 00111222
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCcc
Q 003862 558 QLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVE 637 (790)
Q Consensus 558 ~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e 637 (790)
+- |..........+....|..-|......|--+-|-++|.+|..+.++ +.|......+...+.........
T Consensus 86 ~~----i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~---- 156 (378)
T 3q15_A 86 ET----IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQ---- 156 (378)
T ss_dssp HH----HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HH----HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCC----
Confidence 22 2222110123555666777788877778888888999999999884 56666666666665554444332
Q ss_pred chHHHHHHHHHHHHhccCc-----hhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 003862 638 NRDTLTHKATGYSAKLLKK-----PDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAA 698 (790)
Q Consensus 638 ~y~~L~~k~~~~askLLkK-----~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~ 698 (790)
|+ .+......|-.+.++ +..+.+...-+..+.. ..+-..-++++++|++++...
T Consensus 157 -~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 157 -TH-VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD-----FKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp -HH-HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHT
T ss_pred -cH-HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHc
Confidence 22 233333444444433 2334444444444442 345788999999999998654
No 17
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=30.87 E-value=13 Score=26.19 Aligned_cols=15 Identities=33% Similarity=0.549 Sum_probs=12.5
Q ss_pred chhhHHHHHHHHhHH
Q 003862 100 NILPRLYLLCTVGSV 114 (790)
Q Consensus 100 nIlPRLYLmItVG~~ 114 (790)
.+-+|||+|=|||=+
T Consensus 15 e~FeRL~~iYTVGYS 29 (31)
T 1bl1_A 15 EVFDRLGMIYTVGYS 29 (31)
T ss_dssp HHHHSSHHHHHHHHH
T ss_pred HHHhheeeEEEEeee
Confidence 467899999999953
No 18
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=30.86 E-value=8.2e+02 Score=29.92 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHhhhCCCccHHH
Q 003862 555 KVFQLLNQTIETLYG--VPAPELALRLYLQCAEAANDSDLEPVAY 597 (790)
Q Consensus 555 k~f~fv~~~i~~L~~--~~~~~~~lkLyLq~A~vAd~~~~~~iay 597 (790)
..|+++++++..-.. ...|...++++++|+..|-.....+++-
T Consensus 823 ~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~ 867 (1023)
T 4hat_C 823 EFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEV 867 (1023)
T ss_dssp HHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHH
Confidence 556666655544311 0247788999999999997766555443
No 19
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=29.79 E-value=4.2e+02 Score=26.21 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHh
Q 003862 573 PELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAK 652 (790)
Q Consensus 573 ~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~ask 652 (790)
.+.+..+|-++|.+-...|--+-|.+.|.+|+.++++ ..+......++..+...+.... +|+. +..+-..|.+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g-----~~~~-A~~~~~~Al~ 105 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCFKSGG-----NSVN-AVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT-----CHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHCC-----CHHH-HHHHHHHHHH
Confidence 6788899999988887788878888999999999874 4455545556655544443332 2222 1222223333
Q ss_pred ccCch----hhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHH
Q 003862 653 LLKKP----DQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIAN 696 (790)
Q Consensus 653 LLkK~----dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~ 696 (790)
+..+. ..+.+...-+.++... ..+...-++|+++|+++..
T Consensus 106 l~~~~g~~~~~a~~~~~lg~~~~~~----lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 106 IFTHRGQFRRGANFKFELGEILEND----LHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHH
Confidence 32221 1233333444444421 1457888899999998864
No 20
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=29.77 E-value=4.3e+02 Score=26.34 Aligned_cols=56 Identities=14% Similarity=-0.052 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHH
Q 003862 572 APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTL 628 (790)
Q Consensus 572 ~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL 628 (790)
..+.+..+|-++|.+-...|--+-|-+.|.+|..+++. ..+......++..+....
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~ 86 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN-NRSLFHAAKAFEQAGMML 86 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 45666677777766666666666666777777777663 344444444554444333
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=24.40 E-value=4.7e+02 Score=24.96 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhccc-CcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHh
Q 003862 574 ELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEIS-DSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAK 652 (790)
Q Consensus 574 ~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~-dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~ask 652 (790)
......+..-|.+....|--+-|.++|.+|+.++++... +......+...+...+.....+ +.-.....++.....+
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY--KEAEPLCKRALEIREK 143 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHH
Confidence 334455666667777777777788899999999876543 3344455555555554443221 1111222222222222
Q ss_pred c--cCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCC
Q 003862 653 L--LKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGN 730 (790)
Q Consensus 653 L--LkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~ 730 (790)
. -..++.+.+...-+.+++.. .+-+..+++++++++++...... .+......+ .+....|+..|.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~---~~la~~~~~~g~ 210 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQ-----GKYEEVEYYYQRALEIYQTKLGP-----DDPNVAKTK---NNLASCYLKQGK 210 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHTSCT-----TCHHHHHHH---HHHHHHHHHHTC
T ss_pred hcCCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHH---HHHHHHHHHcCC
Confidence 2 23366777777777777643 35788999999999997665320 011111111 223334455566
Q ss_pred ccccHHHHHHHHHHHHH
Q 003862 731 TQINAAAIQSLIELITA 747 (790)
Q Consensus 731 ~~i~~~~in~Li~li~~ 747 (790)
..=-.+++...+++..+
T Consensus 211 ~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 211 FKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65666677777766544
No 22
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=23.92 E-value=4.8e+02 Score=24.89 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhccc-CcHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHhc-
Q 003862 576 ALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEIS-DSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKL- 653 (790)
Q Consensus 576 ~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~-dS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~~k~~~~askL- 653 (790)
....+..-|.+.-..|--+-|.++|.+|+.+++..-. +......+...+...+.....+ +.-.....++...+.+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY--KDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHh
Confidence 3455555566666667777788889999888875542 3444555555555555443322 11222333333333333
Q ss_pred -cCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhhccCCCCccHhhHHHHHhhhhhhhccCCcc
Q 003862 654 -LKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEKGNTQ 732 (790)
Q Consensus 654 -LkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d~~~~~~~~~~~~~L~veiLn~~ly~~~~~~~~ 732 (790)
-..++...+...-+.+++.. .+-...+++++++++++..... +. .-....-..+....|+..|...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~-------~~-~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKR-----GKYKEAEPLCKRALEIREKVLG-------KD-HPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHHTTTCHH
T ss_pred CCCChHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHhcC-------CC-ChHHHHHHHHHHHHHHHcCCHH
Confidence 23466677777777777743 4578899999999999877633 11 1111111223344455566555
Q ss_pred ccHHHHHHHHHHHHH
Q 003862 733 INAAAIQSLIELITA 747 (790)
Q Consensus 733 i~~~~in~Li~li~~ 747 (790)
-..+++...+++.+.
T Consensus 171 ~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 171 EVEYYYQRALEIYQT 185 (311)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666544
No 23
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=22.82 E-value=2.5e+02 Score=24.13 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 003862 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLS 378 (790)
Q Consensus 320 ~lF~~f~~~i~~l~~~~~~l~~~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~ 378 (790)
.......++-..+++ .+++|+|++++..+.++ ..+|+-.+.+..-|....+.+.
T Consensus 25 ~~Ly~~q~fs~~~ie--k~i~PEeiV~iHk~~i~---el~~~l~e~v~~Sfd~L~Evm~ 78 (84)
T 1w53_A 25 TSLYQAQKFSRKTIE--HQIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMI 78 (84)
T ss_dssp HHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH--cCCCHHHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHH
Confidence 455566777778887 48999999999998876 6788767777777777766654
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=21.58 E-value=6.4e+02 Score=25.49 Aligned_cols=136 Identities=11% Similarity=0.066 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhchhcccCcHHHHHHHHHHHHHHhhccCCCc
Q 003862 557 FQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGV 636 (790)
Q Consensus 557 f~fv~~~i~~L~~~~~~~~~lkLyLq~A~vAd~~~~~~iayeFf~qAf~iyEE~i~dS~~Q~~al~~ii~tL~~~~~~~~ 636 (790)
.++....+........+......+..-|.+.-..|--+-|.+.|.+|+.++++ ..+......++..+...+.....+
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~-- 279 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQF-- 279 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCH--
Confidence 34444444433222334455566777777777778777888999999999986 445555555666655555443221
Q ss_pred cchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 003862 637 ENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLLCLKRALRIANAAQQ 700 (790)
Q Consensus 637 e~y~~L~~k~~~~askLLkK~dQcrav~~cshL~w~~~~~~~~d~krVleCLqkslkiA~~~~d 700 (790)
+.-.....++...+.+.-.......+...-+.+++.. .+-+...++++++++++...-+
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-----HEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHCCC
Confidence 1122222333333333333345566777777777743 4678899999999999887743
No 25
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=21.05 E-value=2.4e+02 Score=26.40 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHhhhhchHHHHHHHhccchhhhhHhHhhhhhcCCcch
Q 003862 232 DTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEY 270 (790)
Q Consensus 232 ~~Y~~~iLP~iLeqIv~c~D~~AQeYLmd~IiQvFPDef 270 (790)
..|.+.+.|.| ++|.+++|.+=..|++++++.-+|.+-
T Consensus 56 ~~~~~~l~p~I-~~vl~s~D~~W~ywil~~lv~~~~~~~ 93 (134)
T 3ut4_A 56 VLHQSIAMPHI-LTILQGNDIMWKYWVIKLMIPYLIYPN 93 (134)
T ss_dssp HHTHHHHHHHH-HHHHHSSCHHHHHHHHHHHGGGCCHHH
T ss_pred HHccHhhHHHH-HHHHHcCChHHHHHHHHHHHHcCCHHH
Confidence 35778889987 678899999999999999999899763
No 26
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=20.37 E-value=1.1e+02 Score=32.72 Aligned_cols=112 Identities=15% Similarity=0.243 Sum_probs=77.2
Q ss_pred HHHHHHhccchhhhhHhHhhhhhcCCcchhHHhHHHHHhhcc-----ccCC------------CCCHHHHHHHHHHH-HH
Q 003862 242 VLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFP-----QLQP------------SVDIKTVLSRLMER-LS 303 (790)
Q Consensus 242 iLeqIv~c~D~~AQeYLmd~IiQvFPDefHl~TL~~lL~~~~-----~l~~------------~V~i~~Il~sLi~R-L~ 303 (790)
++||+-=-|..+|++||.. +++-|--.-|+..+++-|..+- +++- .++.-. ++.. |+
T Consensus 86 iieQm~ykKgTll~~ylk~-~~~~fDI~~~le~INd~L~~I~~~~N~~Lnl~~~~Ieyh~e~~~~~~~q----llqk~fs 160 (350)
T 3zth_A 86 LLEQMEYKKGTLAQGYLRK-IVNQVDIVGHLEKINEQVELIEEAMNRHINLNCGQVEYHLENLPLTLDQ----LLTKNFS 160 (350)
T ss_dssp HHHHTSCSTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHTTCCCEETTEECCCCCCCCCHHH----HHHHTCC
T ss_pred HHHHHHhhhcchHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEehhcccCCHHH----HHHHhcc
Confidence 8899999999999999988 7787887889988888887753 2221 123333 2222 22
Q ss_pred HHHhhccCCCch--hhhHHHHHHHHHHHHHHHhhcCC------------CChhhHHHHHHHHHHHHHHh
Q 003862 304 NYAASSTEVLPE--FLQVEAFSKLNNAIGKVIEAQAD------------MPILGAVTLYSSLLTFTLHV 358 (790)
Q Consensus 304 ~y~~~~~~~i~~--~~~~~lF~~f~~~i~~l~~~~~~------------l~~~d~i~l~~sll~l~l~~ 358 (790)
.|..-++..++- -...+.|-.|-+.+.++.+.+|. ++-++++.+.+.+-.++-+.
T Consensus 161 p~f~~~~knIs~E~vsn~ekl~~fL~mL~~~ls~~t~k~LLV~kNiD~~Ls~~sy~~i~~~~~~ls~k~ 229 (350)
T 3zth_A 161 PFFAIENKNLSFEWVSNIDKLSLFLEMLDHLLSQTTEKYLIVLKNIDGFISEESYTIFYRQICHLVKKY 229 (350)
T ss_dssp CCEEETTEEECGGGSCHHHHHHHHHHHHHHHHTTCCSCEEEEEESCGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccChhhhccHHHHHHHHHHHHHHHhcCCCcEEEEEeCHHHhhcHHHHHHHHHHHHHHHhhC
Confidence 222222333332 11356888999999999887644 67889999999999988874
Done!