BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003863
(790 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
SV=1
Length = 1004
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 164/265 (61%), Positives = 208/265 (78%), Gaps = 1/265 (0%)
Query: 521 VQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAP-NVANVRSSMIGEIENRSSHLLAIKADV 579
V RAP++VEFY SLMKR+S+K+ + + N + R++MIGEIENRS+ LLA+KADV
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777
Query: 580 ATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLR 639
TQG+FV SL EV + + +IED++AFV WLD+EL FLVDERAVLKHFDWPE KAD LR
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837
Query: 640 EAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCR 699
EAAF Y+DL KLE +V+ + DDP + C+ ALKKM L EK+E++VYALLRTR+ + +
Sbjct: 838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYK 897
Query: 700 EFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSKAGVEKDPAMDYMLLQGVRFA 759
EF IP W+ D G++ KIKLSSV+LAKKYM+RVA EL S +G +KDP +++LLQGVRFA
Sbjct: 898 EFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFA 957
Query: 760 FRIHQFAGGFDAETMHAFEELRNIA 784
FR+HQFAGGFDAE+M AFEELR+ A
Sbjct: 958 FRVHQFAGGFDAESMKAFEELRSRA 982
Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 136/235 (57%), Gaps = 46/235 (19%)
Query: 126 ELDSLRSLLQESKEREFKLQAELSEW----KRNPKVLELERELEAKKIENDEIVRRVGML 181
EL+ L+ L++E +ERE KL+ EL E+ ++ ++EL+R+L+ K +E D + + L
Sbjct: 130 ELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSL 189
Query: 182 EDEKTSLSEQLAALSVI-------------LERK-----NDNKN---------------- 207
+ E+ L E+L+ ++ L+R+ N K
Sbjct: 190 QAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLDANQTKGQLLLLKQHVSSLQMKE 249
Query: 208 --AINMGSS------SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASE 259
A+N + + Q+LE++V+EL+R N+ELQ EKR L+ K S E ++ +L+ +E
Sbjct: 250 EEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEKRELSIKLDSAEARIATLSNMTE 309
Query: 260 SDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQN 314
SD ++K++ E L+H NEDL KQVEGLQM+R +EVEEL YLRWVN+CLR EL+N
Sbjct: 310 SDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRN 364
>sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980 OS=Arabidopsis thaliana
GN=At4g04980 PE=2 SV=1
Length = 724
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 28/277 (10%)
Query: 515 KSTTGVVQRAPQVVEFYHSLM-KRDSR------KDSSNG--GVCEAPNVANVRSSM---I 562
K T ++R+ Q+ Y +L K + R K +S G V E V RS M +
Sbjct: 428 KKATSKLRRSAQIANLYWALKGKLEGRGVEGKTKKASKGQNSVAEKSPVKVARSGMADAL 487
Query: 563 GEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDER 622
E+ RSS+ I+ DV + + L +++ +++++++ F ++ L L DE
Sbjct: 488 AEMTKRSSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDMKELLEFHSKVESILEKLTDET 547
Query: 623 AVLKHFD-WPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKME 681
VL F+ +PEKK + +R A Y+ L + E+ +K +P P + L K+ K +
Sbjct: 548 QVLARFEGFPEKKLEVIRTAGALYKKLDGILVELKNWKIEP--PLNDLLDKIERYFNKFK 605
Query: 682 RTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYM------RRVAME 735
+ + RT++ + + + I +D ++ ++K + V ++ M RR A E
Sbjct: 606 GEIETVERTKDEDAKMFKRYNIN----IDFEVLVQVKETMVDVSSNCMELALKERREANE 661
Query: 736 LQSKAGVEKDPAMDYM--LLQGVRFAFRIHQFAGGFD 770
++K G E + L + +FAF+++ FAGG D
Sbjct: 662 -EAKNGEESKMKEERAKRLWRAFQFAFKVYTFAGGHD 697
>sp|Q6NZW0|C102A_DANRE Coiled-coil domain-containing protein 102A OS=Danio rerio
GN=ccdc102a PE=2 SV=1
Length = 581
Score = 37.0 bits (84), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 143 KLQAELSEWKRNPKVLELERELEA-------KKIENDEIVRRVGMLEDE---KTSLSEQL 192
KL+AELS+WK + L ++ EA K++ DE+ R LEDE +T++ ++L
Sbjct: 309 KLEAELSQWKLKYEELNKSKQ-EALKQLNLLKEVHQDELGRMSEDLEDELGARTNMDKKL 367
Query: 193 AALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL--QME--KRNLACKFSSME 248
A L +ER +NA G + LE E + L R NK+L QME + LA K
Sbjct: 368 AELRTEMERLQ-VENAAEWG--RRERLETEKLALERENKKLRTQMEDLEEQLARKRRQAA 424
Query: 249 NQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285
+ L + K +S++ + K E LRH + + KQ +
Sbjct: 425 SALDTDLKTIQSELFERNK-ELADLRHVHSKVKKQYQ 460
>sp|Q6URW6|MYH14_MOUSE Myosin-14 OS=Mus musculus GN=Myh14 PE=1 SV=1
Length = 2000
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 130 LRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189
++ LLQ +++ E LQA E + KV EL+++ A+++ E+ RV LE+E+T L+
Sbjct: 862 VKPLLQVTRQDEV-LQARAQELQ---KVQELQQQ-SAREV--GELQGRVAQLEEERTRLA 914
Query: 190 EQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELR-------RLNKELQMEKRNLAC 242
EQL A + + + + + ++ Q LE+ V EL +++LQ EK+ L
Sbjct: 915 EQLRAEAELCSEAEETRARL---AARKQELELVVTELEARVGEEEECSRQLQSEKKRLQQ 971
Query: 243 KFSSMENQLTSLAKASESDIISKIKAEA---------LVLRHTNEDLSKQ 283
+E+ L + A + + K+ EA L+L N LSK+
Sbjct: 972 HIQELESHLEAEEGARQKLQLEKVTTEAKMKKFEEDLLLLEDQNSKLSKE 1021
>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1
Length = 1959
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 181 LEDEKTSLSEQLAALSVILERKNDNKNAI-----------NMGSSSSQNLEMEVVEL--- 226
L D+ L Q+A L + L +K + A NM + LE ++ EL
Sbjct: 1060 LHDQIAELQAQIAELKIQLSKKEEELQAALARVEEEAAQKNMALKKIRELESQITELQED 1119
Query: 227 ----RRLNKELQMEKRNLACKFSSMENQL--TSLAKASESDIISKIKAEALVLRHTNEDL 280
R + + +KR+L + +++ +L T + A++ ++ SK + E VL+ T ED
Sbjct: 1120 LESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVTVLKKTLEDE 1179
Query: 281 SK----QVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVEN 336
+K Q++ ++ +EELA ++ L+ + SE+A N ++ +++
Sbjct: 1180 AKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEKAKQALESERAELSNEVKVLLQG 1239
Query: 337 VGSLPNQNNKV 347
G ++ KV
Sbjct: 1240 KGDAEHKRKKV 1250
>sp|Q96RT6|CTGE2_HUMAN Protein cTAGE-2 OS=Homo sapiens GN=CTAGE1 PE=1 SV=2
Length = 745
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKE 232
+I +R+ LEDE SL Q+A + +R N+ + LE+E+ + + N E
Sbjct: 138 DISKRIQSLEDESKSLKSQVAEAKMTFKRFQANE----------ERLEIEIQDAWKENSE 187
Query: 233 LQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALV------LRHTNEDLSKQVEG 286
LQ ++ L + + Q++ L K + SK+ AE ++ ++ E L K +G
Sbjct: 188 LQESQKQLLQEAEVWKEQVSELIKQKRTFEDSKVHAEQVLNDKENHIKTLTERLLKMKDG 247
Query: 287 LQM 289
+ M
Sbjct: 248 VAM 250
>sp|Q8CHD8|RFIP3_MOUSE Rab11 family-interacting protein 3 OS=Mus musculus GN=Rab11fip3
PE=1 SV=2
Length = 1047
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 31/168 (18%)
Query: 132 SLLQESKEREFKLQAELSEWKRNPKVL--ELERELEAKKIENDEIVRRVGMLEDEKTSLS 189
+L ++ KE+EF+ Q ++ E R K L ++ERE K IE + + R+ L++E + L
Sbjct: 794 ALEEQLKEQEFRAQEKVLEETRKQKELLCKMERE---KSIEIENLQARLQQLDEENSELR 850
Query: 190 EQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249
L +ER + K Q + E+ EL + E Q KR + + S +
Sbjct: 851 SCTPCLKANIERLEEEK----------QKMLDEIEELTQRLSEEQENKRKMGDRLSHERH 900
Query: 250 QLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297
Q +A++ I EDL KQ+E LQ+ RL EVE+
Sbjct: 901 QFQRDKEATQELI---------------EDLRKQLEHLQLLRL-EVEQ 932
>sp|Q9BXL7|CAR11_HUMAN Caspase recruitment domain-containing protein 11 OS=Homo sapiens
GN=CARD11 PE=1 SV=3
Length = 1154
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 120 SRDLFLELDSLRSLLQESKE-------REFKLQAELSEWKRNPKVLELERELEAKKIEND 172
SRDL LE+D L+ L + +E + KL+ ++ + +VLELERE E K +N
Sbjct: 222 SRDLQLEIDQLKHRLNKMEEECKLERNQSLKLKNDIENRPKKEQVLELERENEMLKTKNQ 281
Query: 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGS---SSSQNLEMEVVELRRL 229
E+ +++ K SL + A+ ILE +D K A+ + NL+ E + L
Sbjct: 282 EL---QSIIQAGKRSLPDSDKAILDILE--HDRKEALEDRQELVNRIYNLQEEARQAEEL 336
Query: 230 NKELQMEKRNLACKFSSM 247
+ EK +L K S++
Sbjct: 337 RDKYLEEKEDLELKCSTL 354
>sp|Q8CIS0|CAR11_MOUSE Caspase recruitment domain-containing protein 11 OS=Mus musculus
GN=Card11 PE=1 SV=2
Length = 1159
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 120 SRDLFLELDSLRSLLQESKE-------REFKLQAELSEWKRNPKVLELERELEAKKIEND 172
SRDL LE+D L+ L + +E + KL+ ++ R +VLELERE E K +
Sbjct: 222 SRDLQLEIDQLKHRLNKMEEECKLERNQSLKLKNDIENRPRKEQVLELERENEMLKTKIQ 281
Query: 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGS---SSSQNLEMEVVELRRL 229
E+ +++ K SL + A+ ILE +D K A+ + NL+ EV + L
Sbjct: 282 EL---QSIIQAGKRSLPDSDKAILDILE--HDRKEALEDRQELVNKIYNLQEEVRQAEEL 336
Query: 230 NKELQMEKRNLACKFSSM 247
+ EK +L K S++
Sbjct: 337 RDKYLEEKEDLELKCSTL 354
>sp|Q9PTD7|CING_XENLA Cingulin OS=Xenopus laevis GN=cgn PE=1 SV=2
Length = 1360
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 160 LERELEAKKIENDEIVRRVGMLEDE----KTSLSEQLAALSVILERKNDNKNA------- 208
LE+++E+KK D+ R+V +LED+ + L E+ + ++ +R N +++
Sbjct: 1108 LEQDIESKKRVQDDRSRQVKVLEDKLKRMEAELDEEKNTVELLTDRVNRSRDQMEQQRAE 1167
Query: 209 INMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250
+N S Q+LE + + L R NKEL+ + +SME Q
Sbjct: 1168 LNQERSRGQDLECDKISLERQNKELK-------NRLASMEGQ 1202
>sp|A6H5Y1|MPP9_MOUSE M-phase phosphoprotein 9 OS=Mus musculus GN=Mphosph9 PE=2 SV=1
Length = 991
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 64 KLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHP-------NSYQTHRRQ 116
K P TT +S V KN SR ++ + N V + Q
Sbjct: 316 KYPSTTRASPVDTWKNHAFQRESRTSSTIPSRYTITSNDISVKTVDEENTVTVASVSQSQ 375
Query: 117 SSGSRDLFLELDSLRSL---------LQESKEREFKLQAELSEWKRNPKVLELERELEAK 167
G+ + E SL SL Q KE+ + A+L + + ++ L+++LEAK
Sbjct: 376 LPGTANSVPECISLASLEDPVMLSKIRQNLKEKHARHVADLRAYYES-EISSLKQKLEAK 434
Query: 168 KI--------ENDEIVRRVGMLE---DEKTSLSEQLAALSVILERK-NDNKNAINMGSSS 215
I +N+ + R G L+ +E TS L + +LE + +D + N SS+
Sbjct: 435 DISAVEEWKKKNEILADRCGQLDSALNEATSRVRTLEKNNNLLEIEVSDLRERFNAASSA 494
Query: 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASE 259
S+ L+ + E+R NKE L C+ +E + K S+
Sbjct: 495 SKVLQERIEEMRTSNKEKDNTITRLKCRLQDLEEAFENAYKLSD 538
>sp|Q9JXH2|RMUC_NEIMB DNA recombination protein RmuC homolog OS=Neisseria meningitidis
serogroup B (strain MC58) GN=rmuC PE=3 SV=1
Length = 594
Score = 33.1 bits (74), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 85/172 (49%), Gaps = 28/172 (16%)
Query: 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQ 217
+EL+ + + +EN+ + ++G E+ + ++Q A LER+ Q
Sbjct: 106 IELQEKAQGLAVENERLATQLG---QERKAFADQYA-----LERQ------------IRQ 145
Query: 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA-KASESDII----SKIKAEALV 272
+E ++ E R+ +++Q + ++ +F++ E Q+ L K +E++ + ++++ +A
Sbjct: 146 RIETDLEESRQTVRDVQNDLSDVGNRFAAAEKQIAHLQEKEAEAERLRQSHTELQEKAQG 205
Query: 273 LRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKA 324
L NE L+ Q+E RL E+L+ L L D+ QN +T EK+
Sbjct: 206 LAVENERLATQIE---QERLASEEKLSLLGEARKSLSDQFQNLANTILEEKS 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,487,842
Number of Sequences: 539616
Number of extensions: 12087054
Number of successful extensions: 83074
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 1536
Number of HSP's that attempted gapping in prelim test: 65930
Number of HSP's gapped (non-prelim): 11429
length of query: 790
length of database: 191,569,459
effective HSP length: 126
effective length of query: 664
effective length of database: 123,577,843
effective search space: 82055687752
effective search space used: 82055687752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)