Query 003863
Match_columns 790
No_of_seqs 257 out of 261
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 13:22:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 99.0 2.8E-10 6E-15 131.4 7.5 42 271-315 342-384 (1102)
2 KOG1924 RhoA GTPase effector D 98.6 7E-08 1.5E-12 112.1 6.0 56 647-703 909-964 (1102)
3 PF09726 Macoilin: Transmembra 97.5 0.0049 1.1E-07 73.7 18.5 159 122-285 422-611 (697)
4 PF14662 CCDC155: Coiled-coil 97.0 0.025 5.5E-07 58.1 15.2 122 123-247 65-191 (193)
5 PRK11637 AmiB activator; Provi 96.9 0.099 2.2E-06 58.9 20.6 74 122-195 44-122 (428)
6 PRK15319 AIDA autotransporter- 96.8 0.00097 2.1E-08 84.7 4.2 9 750-758 1917-1925(2039)
7 PF00038 Filament: Intermediat 96.7 0.25 5.4E-06 52.9 21.2 84 214-305 223-307 (312)
8 PHA02562 46 endonuclease subun 96.6 0.18 3.9E-06 57.8 20.6 71 124-194 180-252 (562)
9 PRK15319 AIDA autotransporter- 96.4 0.0031 6.7E-08 80.4 4.9 11 530-540 1745-1755(2039)
10 KOG1925 Rac1 GTPase effector F 96.4 0.0027 5.9E-08 72.4 3.8 32 670-701 582-613 (817)
11 TIGR02168 SMC_prok_B chromosom 96.4 0.37 7.9E-06 59.0 22.1 25 122-146 688-712 (1179)
12 TIGR02168 SMC_prok_B chromosom 96.3 0.36 7.8E-06 59.1 21.7 26 123-148 710-735 (1179)
13 PF11365 DUF3166: Protein of u 96.2 0.013 2.8E-07 54.4 6.7 84 157-240 3-95 (96)
14 TIGR02169 SMC_prok_A chromosom 96.2 0.45 9.7E-06 58.6 21.8 29 122-150 255-283 (1164)
15 PF04849 HAP1_N: HAP1 N-termin 96.2 0.2 4.3E-06 55.0 16.6 142 121-277 156-306 (306)
16 COG1196 Smc Chromosome segrega 96.2 0.39 8.5E-06 60.7 21.4 87 213-299 375-463 (1163)
17 TIGR02169 SMC_prok_A chromosom 96.2 0.53 1.1E-05 58.0 22.1 29 123-151 249-277 (1164)
18 PHA02562 46 endonuclease subun 96.1 0.35 7.6E-06 55.4 18.9 16 122-137 185-200 (562)
19 KOG1923 Rac1 GTPase effector F 96.1 0.0054 1.2E-07 72.8 4.4 45 79-123 26-80 (830)
20 PF05557 MAD: Mitotic checkpoi 96.0 0.012 2.5E-07 70.5 6.9 167 123-289 362-587 (722)
21 PF09726 Macoilin: Transmembra 96.0 0.3 6.5E-06 58.9 18.5 165 129-300 457-647 (697)
22 KOG1923 Rac1 GTPase effector F 96.0 0.0078 1.7E-07 71.6 5.3 29 279-307 200-229 (830)
23 PF05308 Mito_fiss_reg: Mitoch 96.0 0.018 3.9E-07 61.4 7.4 20 379-398 54-73 (253)
24 COG1579 Zn-ribbon protein, pos 96.0 0.55 1.2E-05 50.1 18.2 130 162-299 45-180 (239)
25 KOG4643 Uncharacterized coiled 96.0 0.21 4.6E-06 61.4 16.8 142 123-279 175-319 (1195)
26 KOG2675 Adenylate cyclase-asso 95.8 0.011 2.3E-07 66.9 5.1 16 524-539 261-276 (480)
27 KOG0977 Nuclear envelope prote 95.8 0.32 6.9E-06 57.1 16.8 80 225-305 307-387 (546)
28 PF07888 CALCOCO1: Calcium bin 95.8 0.72 1.6E-05 54.2 19.6 32 279-310 308-339 (546)
29 TIGR00606 rad50 rad50. This fa 95.6 0.86 1.9E-05 58.4 21.0 37 265-301 988-1024(1311)
30 COG4942 Membrane-bound metallo 95.5 1.4 3.1E-05 50.4 20.4 67 123-192 43-110 (420)
31 PRK03918 chromosome segregatio 95.5 1 2.2E-05 54.7 20.3 78 123-200 160-238 (880)
32 PF01213 CAP_N: Adenylate cycl 95.5 0.004 8.7E-08 68.0 0.2 15 524-538 259-273 (312)
33 PRK02224 chromosome segregatio 95.4 1.1 2.5E-05 54.4 20.6 80 214-293 599-678 (880)
34 KOG0971 Microtubule-associated 95.4 0.98 2.1E-05 55.5 19.2 46 214-259 396-441 (1243)
35 TIGR00606 rad50 rad50. This fa 95.4 0.5 1.1E-05 60.5 18.1 117 157-274 824-947 (1311)
36 KOG0612 Rho-associated, coiled 95.3 0.82 1.8E-05 57.6 18.5 85 214-298 574-660 (1317)
37 KOG0161 Myosin class II heavy 95.2 1.4 3.1E-05 58.3 21.5 31 121-151 904-934 (1930)
38 PLN03188 kinesin-12 family pro 95.2 0.76 1.7E-05 58.2 18.3 78 221-300 1173-1250(1320)
39 PF13851 GAS: Growth-arrest sp 95.2 1.8 4E-05 44.8 18.4 110 123-248 25-134 (201)
40 PF12718 Tropomyosin_1: Tropom 95.2 0.97 2.1E-05 44.5 15.5 95 157-251 23-117 (143)
41 COG1196 Smc Chromosome segrega 95.2 1.5 3.1E-05 55.8 21.0 20 126-145 668-687 (1163)
42 COG1579 Zn-ribbon protein, pos 95.1 0.87 1.9E-05 48.6 16.1 122 124-245 37-173 (239)
43 KOG0977 Nuclear envelope prote 95.0 1.6 3.6E-05 51.4 19.2 125 124-248 41-196 (546)
44 KOG3671 Actin regulatory prote 95.0 0.035 7.7E-07 63.7 5.7 14 361-374 225-238 (569)
45 TIGR01843 type_I_hlyD type I s 94.9 2.5 5.4E-05 46.3 19.6 28 122-149 78-105 (423)
46 PRK02224 chromosome segregatio 94.9 2.1 4.5E-05 52.3 20.6 12 767-778 822-833 (880)
47 PRK11637 AmiB activator; Provi 94.9 4.3 9.3E-05 46.0 21.8 80 121-200 50-134 (428)
48 KOG0161 Myosin class II heavy 94.8 1.5 3.2E-05 58.2 19.8 35 214-248 1083-1117(1930)
49 PRK03918 chromosome segregatio 94.7 3.5 7.6E-05 50.1 21.8 13 766-778 822-834 (880)
50 COG5178 PRP8 U5 snRNP spliceos 94.6 0.024 5.2E-07 69.7 3.2 30 615-647 115-145 (2365)
51 PF09789 DUF2353: Uncharacteri 94.6 1.5 3.2E-05 48.7 16.6 74 123-196 21-113 (319)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 1.9 4.2E-05 41.5 15.3 33 214-246 98-130 (132)
53 PF09755 DUF2046: Uncharacteri 94.4 1.7 3.6E-05 48.1 16.4 98 128-248 23-133 (310)
54 PF07888 CALCOCO1: Calcium bin 94.4 2.7 5.8E-05 49.7 19.0 36 157-192 173-208 (546)
55 KOG0971 Microtubule-associated 94.3 1.7 3.6E-05 53.6 17.5 36 205-240 453-491 (1243)
56 PRK09752 adhesin; Provisional 94.2 0.043 9.3E-07 68.4 4.3 9 750-758 1132-1140(1250)
57 PF14662 CCDC155: Coiled-coil 94.1 2.2 4.7E-05 44.4 15.5 84 158-248 11-94 (193)
58 PHA01732 proline-rich protein 94.1 0.078 1.7E-06 48.5 4.6 6 524-529 44-49 (94)
59 PF04849 HAP1_N: HAP1 N-termin 94.0 3.4 7.4E-05 45.7 17.8 81 171-251 162-250 (306)
60 KOG0980 Actin-binding protein 94.0 6.4 0.00014 48.7 21.3 99 212-315 464-562 (980)
61 KOG1830 Wiskott Aldrich syndro 93.9 0.11 2.4E-06 58.8 6.3 29 168-196 56-84 (518)
62 PF08614 ATG16: Autophagy prot 93.8 0.35 7.5E-06 49.3 9.3 28 217-244 133-160 (194)
63 KOG0250 DNA repair protein RAD 93.8 3.5 7.7E-05 51.7 19.1 39 157-195 276-314 (1074)
64 KOG0933 Structural maintenance 93.5 7.5 0.00016 48.8 20.9 124 106-229 651-802 (1174)
65 PF00261 Tropomyosin: Tropomyo 93.3 5.1 0.00011 42.2 17.2 38 278-315 193-230 (237)
66 KOG4674 Uncharacterized conser 93.3 5.5 0.00012 52.7 20.5 148 124-272 79-281 (1822)
67 KOG0996 Structural maintenance 93.2 4.9 0.00011 51.0 18.9 75 214-293 942-1016(1293)
68 PRK09039 hypothetical protein; 93.1 1.4 3.1E-05 48.9 13.3 92 157-251 83-174 (343)
69 KOG3671 Actin regulatory prote 93.1 0.17 3.6E-06 58.4 6.1 11 468-478 372-382 (569)
70 PF05667 DUF812: Protein of un 93.0 14 0.0003 44.4 21.9 28 124-151 327-354 (594)
71 PF12718 Tropomyosin_1: Tropom 92.7 4.6 0.0001 39.8 14.8 41 213-253 100-140 (143)
72 PF12128 DUF3584: Protein of u 92.6 6.7 0.00015 50.3 20.0 76 116-193 598-673 (1201)
73 KOG1029 Endocytic adaptor prot 92.5 6.3 0.00014 48.2 18.0 82 214-295 486-576 (1118)
74 KOG0996 Structural maintenance 92.4 7.9 0.00017 49.2 19.3 38 214-251 472-509 (1293)
75 PF15070 GOLGA2L5: Putative go 92.3 11 0.00023 45.5 19.9 69 214-287 167-242 (617)
76 PF06818 Fez1: Fez1; InterPro 92.3 2.5 5.3E-05 44.3 12.9 72 124-195 30-106 (202)
77 PF10186 Atg14: UV radiation r 92.3 5.6 0.00012 41.7 15.9 83 121-203 16-104 (302)
78 KOG0250 DNA repair protein RAD 92.2 7 0.00015 49.3 18.6 74 213-291 364-438 (1074)
79 KOG0963 Transcription factor/C 91.9 12 0.00026 44.9 19.2 71 159-230 186-265 (629)
80 KOG0933 Structural maintenance 91.9 8.4 0.00018 48.3 18.4 38 268-305 899-940 (1174)
81 KOG1029 Endocytic adaptor prot 91.7 14 0.00031 45.4 19.6 27 170-196 473-499 (1118)
82 PF05700 BCAS2: Breast carcino 91.4 4.3 9.3E-05 42.5 13.7 112 123-235 102-217 (221)
83 PF06548 Kinesin-related: Kine 91.3 17 0.00036 42.4 18.9 76 222-299 404-479 (488)
84 KOG4673 Transcription factor T 91.2 13 0.00029 45.1 18.6 51 157-207 476-526 (961)
85 KOG4360 Uncharacterized coiled 91.2 7.3 0.00016 45.8 16.2 71 125-195 159-238 (596)
86 KOG1925 Rac1 GTPase effector F 91.1 0.14 3.1E-06 59.0 2.7 29 469-500 227-255 (817)
87 KOG2391 Vacuolar sorting prote 91.0 2.4 5.3E-05 47.4 11.9 28 599-626 246-273 (365)
88 PF00038 Filament: Intermediat 90.8 5.7 0.00012 42.6 14.4 78 163-249 5-82 (312)
89 KOG1830 Wiskott Aldrich syndro 90.8 0.27 5.8E-06 55.9 4.4 10 524-533 370-379 (518)
90 PRK09039 hypothetical protein; 90.7 21 0.00046 39.9 19.0 81 170-253 82-162 (343)
91 PF15070 GOLGA2L5: Putative go 90.7 11 0.00025 45.3 17.9 68 122-189 84-156 (617)
92 PRK01156 chromosome segregatio 90.6 21 0.00046 44.0 20.7 32 120-151 471-502 (895)
93 PF05308 Mito_fiss_reg: Mitoch 90.6 0.28 6.1E-06 52.6 4.2 6 561-566 243-248 (253)
94 KOG1785 Tyrosine kinase negati 90.6 0.36 7.8E-06 54.6 5.1 11 469-479 482-492 (563)
95 KOG0243 Kinesin-like protein [ 90.4 10 0.00023 47.8 17.6 128 121-248 407-559 (1041)
96 COG1340 Uncharacterized archae 90.4 33 0.00072 38.1 20.9 70 125-194 13-87 (294)
97 PF00261 Tropomyosin: Tropomyo 90.4 26 0.00057 36.9 19.6 32 267-298 196-227 (237)
98 KOG2675 Adenylate cyclase-asso 90.3 0.24 5.3E-06 56.4 3.6 6 577-582 334-339 (480)
99 PF09787 Golgin_A5: Golgin sub 90.2 25 0.00054 41.2 19.9 28 264-291 277-304 (511)
100 PF12128 DUF3584: Protein of u 90.2 32 0.0007 44.4 22.3 94 159-252 356-459 (1201)
101 KOG0999 Microtubule-associated 90.1 20 0.00044 42.7 18.5 28 157-184 52-79 (772)
102 PRK04863 mukB cell division pr 90.0 12 0.00026 49.3 18.5 44 670-717 1015-1058(1486)
103 PF01213 CAP_N: Adenylate cycl 89.9 0.092 2E-06 57.7 0.0 6 446-451 163-168 (312)
104 PF09755 DUF2046: Uncharacteri 89.7 27 0.00059 38.9 18.4 61 214-285 142-202 (310)
105 PF09730 BicD: Microtubule-ass 89.7 15 0.00032 45.1 17.8 115 127-245 15-145 (717)
106 PF10211 Ax_dynein_light: Axon 89.6 8.7 0.00019 39.5 13.9 172 104-286 8-188 (189)
107 PF14915 CCDC144C: CCDC144C pr 89.4 30 0.00065 38.5 18.2 169 115-283 60-286 (305)
108 PF08614 ATG16: Autophagy prot 89.4 1.9 4E-05 44.0 8.8 80 157-246 104-183 (194)
109 PF10174 Cast: RIM-binding pro 89.4 11 0.00024 46.6 16.6 165 122-286 319-539 (775)
110 PHA03247 large tegument protei 89.1 0.65 1.4E-05 62.1 6.4 30 671-700 3109-3138(3151)
111 PHA03211 serine/threonine kina 89.1 0.39 8.4E-06 54.8 4.1 10 519-528 66-75 (461)
112 PRK04778 septation ring format 88.9 23 0.00049 42.0 18.4 46 270-315 378-423 (569)
113 PF09728 Taxilin: Myosin-like 88.9 34 0.00074 37.9 18.6 145 128-288 142-299 (309)
114 PF09789 DUF2353: Uncharacteri 88.8 11 0.00023 42.1 14.7 41 265-305 158-202 (319)
115 PF04111 APG6: Autophagy prote 88.6 4.2 9.1E-05 44.9 11.5 28 224-251 95-122 (314)
116 KOG0982 Centrosomal protein Nu 88.6 29 0.00064 40.3 18.0 32 169-200 297-328 (502)
117 PF08317 Spc7: Spc7 kinetochor 88.6 8 0.00017 42.6 13.6 140 126-276 143-291 (325)
118 PF05483 SCP-1: Synaptonemal c 88.5 55 0.0012 40.1 20.8 112 158-274 516-649 (786)
119 PF05622 HOOK: HOOK protein; 88.5 0.14 3E-06 61.5 0.0 38 268-305 384-421 (713)
120 PF15619 Lebercilin: Ciliary p 88.4 12 0.00026 38.9 14.0 73 123-195 66-144 (194)
121 KOG0995 Centromere-associated 88.3 11 0.00023 44.9 14.9 38 157-194 215-253 (581)
122 KOG1853 LIS1-interacting prote 88.3 17 0.00037 39.6 15.2 110 135-249 23-140 (333)
123 TIGR01843 type_I_hlyD type I s 88.2 24 0.00051 38.8 16.9 38 214-251 196-233 (423)
124 PF10473 CENP-F_leu_zip: Leuci 88.0 15 0.00033 36.6 13.7 32 160-191 8-39 (140)
125 KOG0018 Structural maintenance 88.0 48 0.001 42.3 20.6 99 217-315 803-905 (1141)
126 KOG0976 Rho/Rac1-interacting s 87.9 54 0.0012 40.9 20.3 43 263-307 419-461 (1265)
127 KOG4593 Mitotic checkpoint pro 87.7 26 0.00056 42.7 17.7 37 157-193 160-196 (716)
128 KOG2391 Vacuolar sorting prote 87.4 12 0.00025 42.3 13.7 16 603-618 243-258 (365)
129 PHA03247 large tegument protei 87.3 0.79 1.7E-05 61.3 5.6 7 664-670 3092-3098(3151)
130 COG5178 PRP8 U5 snRNP spliceos 87.2 0.44 9.5E-06 59.4 3.1 17 751-767 266-282 (2365)
131 PF15195 TMEM210: TMEM210 fami 87.2 0.35 7.7E-06 45.2 1.9 8 436-443 55-62 (116)
132 PF10186 Atg14: UV radiation r 87.1 14 0.00031 38.8 13.9 80 171-251 22-107 (302)
133 PF10226 DUF2216: Uncharacteri 87.1 6.9 0.00015 40.8 11.1 106 128-233 12-134 (195)
134 KOG0999 Microtubule-associated 86.9 57 0.0012 39.2 19.3 53 268-320 194-260 (772)
135 KOG4643 Uncharacterized coiled 86.8 54 0.0012 41.7 20.0 70 125-194 257-340 (1195)
136 PF08317 Spc7: Spc7 kinetochor 86.6 25 0.00054 38.8 15.9 39 213-251 215-253 (325)
137 KOG0979 Structural maintenance 86.5 18 0.0004 45.5 16.0 133 122-254 206-358 (1072)
138 PF05622 HOOK: HOOK protein; 86.5 0.21 4.6E-06 59.9 0.0 129 119-247 326-478 (713)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.3 16 0.00034 35.4 12.6 38 214-251 59-96 (132)
140 PRK01156 chromosome segregatio 86.1 48 0.001 41.0 19.6 31 116-146 474-504 (895)
141 KOG0995 Centromere-associated 85.7 66 0.0014 38.6 19.3 34 214-247 360-393 (581)
142 PRK04778 septation ring format 85.6 75 0.0016 37.8 20.2 85 112-196 243-368 (569)
143 TIGR01000 bacteriocin_acc bact 85.5 62 0.0014 37.1 19.0 31 120-150 92-122 (457)
144 PF13851 GAS: Growth-arrest sp 85.5 37 0.0008 35.3 15.7 78 116-193 46-131 (201)
145 PF13863 DUF4200: Domain of un 85.2 8.5 0.00018 36.1 10.0 70 128-197 28-109 (126)
146 KOG0249 LAR-interacting protei 85.1 14 0.0003 45.2 13.6 166 125-295 49-243 (916)
147 PF15619 Lebercilin: Ciliary p 85.0 52 0.0011 34.3 19.0 27 259-285 162-188 (194)
148 PF09738 DUF2051: Double stran 84.9 54 0.0012 36.5 17.4 126 123-248 75-246 (302)
149 PRK04863 mukB cell division pr 84.6 45 0.00098 44.2 19.1 54 579-632 913-975 (1486)
150 PF01486 K-box: K-box region; 84.6 7.1 0.00015 35.8 9.0 71 121-194 15-100 (100)
151 PF01576 Myosin_tail_1: Myosin 84.5 0.3 6.5E-06 60.1 0.0 148 116-263 129-313 (859)
152 KOG1922 Rho GTPase effector BN 84.5 1.4 3.1E-05 53.8 5.7 14 524-537 393-406 (833)
153 PF09325 Vps5: Vps5 C terminal 84.2 52 0.0011 33.6 18.1 189 106-308 22-220 (236)
154 KOG4674 Uncharacterized conser 84.2 58 0.0013 43.8 19.6 40 213-252 1098-1137(1822)
155 PF04012 PspA_IM30: PspA/IM30 84.0 21 0.00044 36.8 13.1 120 130-249 10-147 (221)
156 KOG0979 Structural maintenance 83.8 60 0.0013 41.3 18.6 38 211-248 273-310 (1072)
157 KOG4302 Microtubule-associated 83.8 72 0.0016 39.1 19.0 124 97-226 136-302 (660)
158 smart00787 Spc7 Spc7 kinetocho 83.7 27 0.00059 38.8 14.5 92 157-251 153-248 (312)
159 KOG0976 Rho/Rac1-interacting s 83.7 99 0.0021 38.8 19.8 90 157-247 94-209 (1265)
160 KOG3091 Nuclear pore complex, 83.7 7 0.00015 45.7 10.3 91 157-250 336-426 (508)
161 KOG4673 Transcription factor T 83.7 16 0.00035 44.4 13.3 34 118-151 339-372 (961)
162 PRK15313 autotransport protein 83.6 1.2 2.6E-05 55.1 4.5 9 532-540 655-663 (955)
163 PF10174 Cast: RIM-binding pro 83.6 97 0.0021 38.7 20.3 40 214-253 385-424 (775)
164 TIGR03185 DNA_S_dndD DNA sulfu 83.6 82 0.0018 37.9 19.5 77 119-195 203-288 (650)
165 PF05911 DUF869: Plant protein 83.4 40 0.00087 41.8 17.0 35 214-248 680-714 (769)
166 PF12325 TMF_TATA_bd: TATA ele 83.2 37 0.0008 33.0 13.5 42 157-198 18-59 (120)
167 KOG0980 Actin-binding protein 83.1 75 0.0016 40.0 18.7 68 184-251 387-454 (980)
168 COG5185 HEC1 Protein involved 83.0 1.1E+02 0.0023 36.3 20.3 28 157-184 332-359 (622)
169 COG1340 Uncharacterized archae 83.0 84 0.0018 35.0 18.4 74 214-299 158-231 (294)
170 PF07106 TBPIP: Tat binding pr 82.9 9.9 0.00021 37.8 9.9 63 121-183 75-137 (169)
171 PRK15313 autotransport protein 82.9 1.2 2.6E-05 55.1 4.1 9 750-758 829-837 (955)
172 KOG1937 Uncharacterized conser 82.8 50 0.0011 38.7 16.3 65 214-285 455-519 (521)
173 PF01698 FLO_LFY: Floricaula / 82.8 0.39 8.4E-06 54.1 0.0 10 526-535 50-59 (386)
174 KOG4590 Signal transduction pr 82.7 2 4.2E-05 49.2 5.4 14 558-571 259-272 (409)
175 PF10473 CENP-F_leu_zip: Leuci 82.6 49 0.0011 33.0 14.4 112 124-242 9-122 (140)
176 PF06818 Fez1: Fez1; InterPro 82.5 38 0.00083 35.8 14.2 20 214-233 87-106 (202)
177 PF15254 CCDC14: Coiled-coil d 82.3 48 0.001 41.0 16.7 19 267-285 535-553 (861)
178 PF15397 DUF4618: Domain of un 82.3 38 0.00083 36.9 14.6 25 214-238 200-224 (258)
179 PF04156 IncA: IncA protein; 82.1 32 0.0007 34.5 13.3 30 216-245 153-182 (191)
180 KOG4001 Axonemal dynein light 81.7 3.1 6.8E-05 43.8 6.0 66 217-287 188-254 (259)
181 PF04156 IncA: IncA protein; 81.2 30 0.00065 34.7 12.7 40 157-196 83-122 (191)
182 KOG1003 Actin filament-coating 81.2 79 0.0017 33.5 19.7 177 124-315 3-198 (205)
183 PF05667 DUF812: Protein of un 81.1 1.3E+02 0.0028 36.5 19.7 39 211-249 495-533 (594)
184 PF04111 APG6: Autophagy prote 80.9 7.6 0.00017 42.9 9.1 39 213-251 49-87 (314)
185 PRK10884 SH3 domain-containing 80.8 6.6 0.00014 41.1 8.1 39 213-251 124-162 (206)
186 COG1842 PspA Phage shock prote 80.8 84 0.0018 33.6 17.8 66 130-195 11-78 (225)
187 PF09730 BicD: Microtubule-ass 80.5 12 0.00025 45.9 11.1 77 121-200 72-152 (717)
188 KOG0978 E3 ubiquitin ligase in 80.4 95 0.0021 38.3 18.3 31 170-200 490-520 (698)
189 TIGR03007 pepcterm_ChnLen poly 80.0 1.1E+02 0.0024 35.2 18.2 27 125-151 161-187 (498)
190 PF01576 Myosin_tail_1: Myosin 80.0 0.56 1.2E-05 57.8 0.0 201 118-318 187-448 (859)
191 PF12325 TMF_TATA_bd: TATA ele 79.4 48 0.001 32.2 12.8 30 122-151 13-42 (120)
192 PRK09343 prefoldin subunit bet 79.4 20 0.00044 34.4 10.3 41 160-200 5-45 (121)
193 KOG1899 LAR transmembrane tyro 79.3 1E+02 0.0023 37.6 17.7 122 157-288 141-280 (861)
194 TIGR02977 phageshock_pspA phag 78.8 38 0.00083 35.3 13.0 99 152-250 34-149 (219)
195 TIGR02680 conserved hypothetic 78.8 1.4E+02 0.003 39.5 20.4 29 123-151 747-775 (1353)
196 PF07462 MSP1_C: Merozoite sur 78.7 8 0.00017 45.7 8.6 37 560-597 364-400 (574)
197 KOG0559 Dihydrolipoamide succi 78.7 3.9 8.5E-05 46.2 5.9 37 556-592 257-293 (457)
198 PF05701 WEMBL: Weak chloropla 78.6 1.4E+02 0.0029 35.5 18.7 18 121-138 175-192 (522)
199 PF07106 TBPIP: Tat binding pr 78.5 16 0.00035 36.3 9.7 84 214-307 72-161 (169)
200 KOG1922 Rho GTPase effector BN 78.4 2.7 5.9E-05 51.4 5.1 30 651-680 668-697 (833)
201 COG0419 SbcC ATPase involved i 78.3 1.1E+02 0.0024 38.4 18.7 31 170-200 275-305 (908)
202 KOG0018 Structural maintenance 78.2 37 0.00081 43.2 14.4 166 125-299 814-999 (1141)
203 PRK10698 phage shock protein P 78.2 43 0.00092 35.4 13.1 99 152-250 34-149 (222)
204 PRK10884 SH3 domain-containing 78.1 15 0.00033 38.5 9.7 33 157-189 134-166 (206)
205 PF00769 ERM: Ezrin/radixin/mo 78.1 28 0.00061 37.2 12.0 36 157-192 35-70 (246)
206 PF05483 SCP-1: Synaptonemal c 78.1 1.8E+02 0.004 35.9 21.5 165 123-291 294-480 (786)
207 KOG0963 Transcription factor/C 77.8 1.1E+02 0.0024 37.1 17.5 30 214-243 196-225 (629)
208 PF05518 Totivirus_coat: Totiv 77.8 3.8 8.3E-05 49.9 5.9 14 125-138 209-222 (759)
209 smart00787 Spc7 Spc7 kinetocho 77.3 49 0.0011 36.8 13.8 59 216-275 227-285 (312)
210 TIGR01005 eps_transp_fam exopo 77.3 67 0.0015 39.1 16.2 26 127-152 196-221 (754)
211 KOG0162 Myosin class I heavy c 77.3 2.8 6.1E-05 50.9 4.5 30 73-102 510-540 (1106)
212 KOG0964 Structural maintenance 76.3 1.5E+02 0.0033 38.0 18.5 31 121-151 695-725 (1200)
213 PF15195 TMEM210: TMEM210 fami 76.0 1.6 3.5E-05 41.0 1.7 6 471-476 84-89 (116)
214 PRK14849 putative lipoprotein/ 75.8 1.6 3.4E-05 57.3 2.2 10 749-758 1679-1688(1806)
215 COG2433 Uncharacterized conser 75.5 20 0.00044 43.1 10.7 38 114-151 411-448 (652)
216 PLN02939 transferase, transfer 75.5 63 0.0014 41.2 15.4 167 123-292 224-414 (977)
217 PF09744 Jnk-SapK_ap_N: JNK_SA 75.4 72 0.0016 32.4 13.3 37 217-253 85-121 (158)
218 PRK10929 putative mechanosensi 75.3 31 0.00067 44.4 13.0 30 166-195 205-234 (1109)
219 KOG0239 Kinesin (KAR3 subfamil 75.2 68 0.0015 39.3 15.3 89 157-245 184-272 (670)
220 TIGR03017 EpsF chain length de 75.2 93 0.002 35.1 15.7 28 126-153 172-199 (444)
221 PF09304 Cortex-I_coil: Cortex 75.1 42 0.00091 32.3 10.8 85 157-251 11-95 (107)
222 KOG2236 Uncharacterized conser 75.1 3.1 6.7E-05 48.1 4.0 16 349-364 320-335 (483)
223 PF07111 HCR: Alpha helical co 74.4 1.2E+02 0.0026 37.5 16.7 81 167-247 99-195 (739)
224 KOG0612 Rho-associated, coiled 74.2 1.9E+02 0.004 37.9 18.8 28 214-241 588-615 (1317)
225 PF09787 Golgin_A5: Golgin sub 73.9 1.1E+02 0.0024 36.1 16.2 59 134-194 196-260 (511)
226 PF05010 TACC: Transforming ac 73.7 1.2E+02 0.0025 32.3 14.8 31 214-244 154-184 (207)
227 COG5185 HEC1 Protein involved 73.6 1.1E+02 0.0023 36.4 15.5 39 112-150 324-362 (622)
228 PF14257 DUF4349: Domain of un 73.5 15 0.00032 38.9 8.5 69 115-183 122-190 (262)
229 PF05557 MAD: Mitotic checkpoi 73.0 2.6 5.7E-05 50.9 3.0 77 120-196 338-426 (722)
230 KOG0982 Centrosomal protein Nu 72.9 88 0.0019 36.6 14.5 57 222-289 375-431 (502)
231 PF08172 CASP_C: CASP C termin 72.8 18 0.00038 39.0 8.8 103 213-316 5-133 (248)
232 PF11932 DUF3450: Protein of u 72.1 54 0.0012 34.7 12.2 75 126-200 22-101 (251)
233 PF05103 DivIVA: DivIVA protei 72.0 3.6 7.9E-05 38.6 3.1 61 214-274 25-91 (131)
234 PF14992 TMCO5: TMCO5 family 71.7 43 0.00093 37.0 11.4 146 160-307 9-166 (280)
235 PF06008 Laminin_I: Laminin Do 71.6 1.2E+02 0.0025 32.5 14.6 36 214-251 127-162 (264)
236 TIGR03185 DNA_S_dndD DNA sulfu 71.5 81 0.0018 38.0 14.8 64 134-197 393-463 (650)
237 PRK14849 putative lipoprotein/ 71.4 2.7 5.9E-05 55.3 2.8 8 532-539 1501-1508(1806)
238 COG2433 Uncharacterized conser 71.4 14 0.00031 44.3 8.3 15 38-52 306-320 (652)
239 PF04859 DUF641: Plant protein 71.0 5 0.00011 39.5 3.9 40 152-191 90-130 (131)
240 PF06003 SMN: Survival motor n 70.7 1.4 3E-05 47.5 0.0 9 362-370 66-74 (264)
241 PF10498 IFT57: Intra-flagella 70.6 90 0.0019 35.5 14.0 67 216-288 289-355 (359)
242 KOG0962 DNA repair protein RAD 70.4 2.8E+02 0.006 36.7 19.4 34 266-299 1046-1079(1294)
243 KOG2129 Uncharacterized conser 70.2 2.3E+02 0.0049 33.4 18.8 65 224-296 249-313 (552)
244 PF12238 MSA-2c: Merozoite sur 70.1 9.6 0.00021 40.1 5.9 12 464-475 135-146 (205)
245 KOG0249 LAR-interacting protei 69.0 40 0.00086 41.5 11.2 22 717-738 722-746 (916)
246 COG0419 SbcC ATPase involved i 68.9 3.2E+02 0.0068 34.5 19.5 8 767-774 852-859 (908)
247 COG3883 Uncharacterized protei 68.5 1.9E+02 0.0042 31.9 15.5 28 124-151 37-64 (265)
248 PF10146 zf-C4H2: Zinc finger- 68.5 87 0.0019 33.6 12.7 17 214-230 60-76 (230)
249 KOG3397 Acetyltransferases [Ge 68.4 7.5 0.00016 40.4 4.6 14 503-516 189-202 (225)
250 PF06005 DUF904: Protein of un 68.3 52 0.0011 29.3 9.3 32 158-189 7-38 (72)
251 KOG4807 F-actin binding protei 68.1 2.4E+02 0.0053 32.9 18.3 55 93-148 261-321 (593)
252 KOG4593 Mitotic checkpoint pro 67.9 3.1E+02 0.0067 34.0 20.1 65 128-192 108-181 (716)
253 PF00769 ERM: Ezrin/radixin/mo 67.7 70 0.0015 34.3 11.9 39 213-251 53-91 (246)
254 KOG3997 Major apurinic/apyrimi 67.5 17 0.00038 39.0 7.2 89 694-782 95-201 (281)
255 KOG1853 LIS1-interacting prote 66.9 2.1E+02 0.0045 31.7 15.6 41 214-254 112-152 (333)
256 PF11365 DUF3166: Protein of u 66.2 25 0.00053 33.2 7.1 64 124-187 14-94 (96)
257 PF15066 CAGE1: Cancer-associa 66.1 1.4E+02 0.003 35.4 14.3 32 159-190 401-432 (527)
258 PF05911 DUF869: Plant protein 65.7 1.3E+02 0.0027 37.7 14.9 80 169-248 24-119 (769)
259 PF01920 Prefoldin_2: Prefoldi 65.6 24 0.00053 31.7 7.0 38 214-251 62-99 (106)
260 KOG2991 Splicing regulator [RN 65.5 86 0.0019 34.6 11.9 20 128-147 118-137 (330)
261 PF14988 DUF4515: Domain of un 65.4 1.9E+02 0.004 30.5 17.6 51 124-179 17-71 (206)
262 PF11559 ADIP: Afadin- and alp 65.1 1.4E+02 0.0031 29.1 15.8 95 102-200 15-111 (151)
263 PF07304 SRA1: Steroid recepto 65.0 3.4 7.3E-05 41.4 1.4 14 523-536 40-53 (157)
264 PF01698 FLO_LFY: Floricaula / 65.0 2.1 4.6E-05 48.5 0.0 6 618-623 149-154 (386)
265 KOG4572 Predicted DNA-binding 64.8 2E+02 0.0042 36.4 15.7 93 157-249 931-1030(1424)
266 KOG4849 mRNA cleavage factor I 64.6 7.6 0.00017 43.8 4.1 12 590-601 378-389 (498)
267 TIGR01010 BexC_CtrB_KpsE polys 64.3 1.2E+02 0.0025 33.7 13.3 22 173-194 211-232 (362)
268 KOG2129 Uncharacterized conser 63.7 1.7E+02 0.0038 34.2 14.4 29 219-247 199-227 (552)
269 PF10168 Nup88: Nuclear pore c 63.6 3.2E+02 0.007 34.0 17.8 93 157-252 567-670 (717)
270 PF15066 CAGE1: Cancer-associa 63.6 1.8E+02 0.0039 34.5 14.6 37 280-323 447-484 (527)
271 PF10146 zf-C4H2: Zinc finger- 62.8 1.5E+02 0.0033 31.8 13.2 12 413-424 203-214 (230)
272 PRK14950 DNA polymerase III su 62.3 12 0.00026 44.4 5.5 31 559-592 461-491 (585)
273 KOG0804 Cytoplasmic Zn-finger 61.8 44 0.00096 39.1 9.5 65 136-200 348-421 (493)
274 PF15290 Syntaphilin: Golgi-lo 61.4 55 0.0012 36.3 9.7 60 124-183 67-138 (305)
275 KOG0162 Myosin class I heavy c 61.3 9.6 0.00021 46.6 4.4 12 353-364 850-861 (1106)
276 PF14197 Cep57_CLD_2: Centroso 60.9 31 0.00068 30.5 6.5 62 219-287 3-66 (69)
277 TIGR02338 gimC_beta prefoldin, 60.8 77 0.0017 29.7 9.5 83 169-251 10-104 (110)
278 KOG3895 Synaptic vesicle prote 60.6 13 0.00029 42.1 5.1 13 463-475 386-398 (488)
279 cd00632 Prefoldin_beta Prefold 60.6 68 0.0015 29.7 9.0 33 213-245 69-101 (105)
280 PF13514 AAA_27: AAA domain 60.4 4.1E+02 0.0089 34.3 18.6 34 562-595 742-775 (1111)
281 KOG0946 ER-Golgi vesicle-tethe 60.3 3E+02 0.0064 34.9 16.2 29 123-151 662-690 (970)
282 PLN02939 transferase, transfer 60.1 2.6E+02 0.0057 36.0 16.4 37 45-81 39-79 (977)
283 TIGR02680 conserved hypothetic 59.9 4.5E+02 0.0098 34.9 19.1 24 556-579 738-761 (1353)
284 PF03276 Gag_spuma: Spumavirus 59.6 13 0.00028 44.1 5.0 98 554-679 302-404 (582)
285 PF10481 CENP-F_N: Cenp-F N-te 59.5 2.9E+02 0.0063 30.9 15.8 74 171-250 55-131 (307)
286 KOG4672 Uncharacterized conser 59.4 15 0.00031 42.4 5.2 9 307-315 117-125 (487)
287 KOG0964 Structural maintenance 59.3 5.1E+02 0.011 33.6 19.7 40 157-196 330-369 (1200)
288 PF13863 DUF4200: Domain of un 59.3 1.6E+02 0.0034 27.7 11.5 76 179-254 35-114 (126)
289 PF10152 DUF2360: Predicted co 59.1 23 0.0005 35.2 6.0 19 517-535 106-124 (148)
290 PF14197 Cep57_CLD_2: Centroso 59.0 75 0.0016 28.1 8.5 64 123-189 3-67 (69)
291 KOG1850 Myosin-like coiled-coi 58.9 3.2E+02 0.007 31.2 19.8 161 128-306 76-276 (391)
292 PF06160 EzrA: Septation ring 58.8 2.8E+02 0.006 33.2 15.8 56 123-178 304-367 (560)
293 COG1382 GimC Prefoldin, chaper 58.4 72 0.0016 31.2 9.0 30 122-151 10-39 (119)
294 KOG4590 Signal transduction pr 58.3 15 0.00032 42.3 5.2 18 463-480 143-160 (409)
295 PF10168 Nup88: Nuclear pore c 58.1 3.9E+02 0.0084 33.3 17.2 44 157-200 581-624 (717)
296 PRK11519 tyrosine kinase; Prov 58.0 1E+02 0.0023 37.6 12.4 38 124-161 266-303 (719)
297 PF11802 CENP-K: Centromere-as 57.9 91 0.002 34.4 10.6 32 260-291 153-184 (268)
298 PF14077 WD40_alt: Alternative 57.4 10 0.00022 31.5 2.6 23 213-235 17-39 (48)
299 PF12004 DUF3498: Domain of un 57.3 3.5 7.6E-05 48.3 0.0 66 122-187 373-451 (495)
300 PF07111 HCR: Alpha helical co 57.0 4.8E+02 0.01 32.6 18.2 82 217-298 238-336 (739)
301 TIGR03007 pepcterm_ChnLen poly 57.0 2.5E+02 0.0054 32.4 14.7 29 123-151 202-230 (498)
302 PF10211 Ax_dynein_light: Axon 57.0 2.4E+02 0.0053 29.2 13.9 64 171-237 122-186 (189)
303 PRK06975 bifunctional uroporph 56.9 1E+02 0.0022 37.6 12.0 51 618-679 447-497 (656)
304 COG3074 Uncharacterized protei 56.6 1.2E+02 0.0026 27.5 9.3 39 159-197 8-46 (79)
305 PRK11281 hypothetical protein; 56.4 5.1E+02 0.011 34.0 18.3 165 122-291 125-336 (1113)
306 PRK11281 hypothetical protein; 56.2 6E+02 0.013 33.4 19.4 34 216-249 194-227 (1113)
307 KOG3895 Synaptic vesicle prote 56.2 18 0.00039 41.2 5.2 9 129-137 173-181 (488)
308 cd00632 Prefoldin_beta Prefold 56.1 1.1E+02 0.0025 28.3 9.7 29 123-151 4-32 (105)
309 KOG3397 Acetyltransferases [Ge 55.9 10 0.00022 39.4 3.0 14 409-422 87-100 (225)
310 KOG0946 ER-Golgi vesicle-tethe 55.8 1.1E+02 0.0023 38.5 11.7 38 214-251 848-885 (970)
311 KOG0978 E3 ubiquitin ligase in 55.6 5E+02 0.011 32.4 20.1 73 123-195 398-480 (698)
312 TIGR03319 YmdA_YtgF conserved 55.3 3.2E+02 0.007 32.5 15.4 49 212-260 99-147 (514)
313 PF07544 Med9: RNA polymerase 55.1 18 0.00039 32.6 4.2 61 116-178 19-82 (83)
314 KOG0132 RNA polymerase II C-te 55.1 17 0.00036 44.8 5.0 10 404-413 456-465 (894)
315 PF09304 Cortex-I_coil: Cortex 55.0 1.2E+02 0.0026 29.4 9.6 27 225-251 41-67 (107)
316 PF13514 AAA_27: AAA domain 55.0 4.5E+02 0.0098 33.9 17.7 33 214-246 242-274 (1111)
317 COG1382 GimC Prefoldin, chaper 54.9 92 0.002 30.5 9.1 86 163-248 7-111 (119)
318 KOG0288 WD40 repeat protein Ti 54.8 3.2E+02 0.0069 32.1 14.5 62 132-196 6-68 (459)
319 KOG4672 Uncharacterized conser 54.4 20 0.00044 41.3 5.3 7 606-612 478-484 (487)
320 TIGR00634 recN DNA repair prot 53.9 4.5E+02 0.0097 31.3 18.2 59 215-275 302-360 (563)
321 KOG0566 Inositol-1,4,5-triphos 53.9 17 0.00037 45.6 4.9 13 353-365 839-851 (1080)
322 TIGR01005 eps_transp_fam exopo 53.9 2.1E+02 0.0045 35.0 14.0 27 122-148 241-267 (754)
323 TIGR02338 gimC_beta prefoldin, 53.6 1.5E+02 0.0032 27.9 10.1 28 124-151 9-36 (110)
324 KOG2991 Splicing regulator [RN 53.6 1.9E+02 0.004 32.1 11.9 133 170-308 102-255 (330)
325 KOG0962 DNA repair protein RAD 53.5 6.9E+02 0.015 33.4 19.5 24 12-37 45-68 (1294)
326 COG5293 Predicted ATPase [Gene 53.1 4.7E+02 0.01 31.3 18.3 157 125-286 193-404 (591)
327 PF05266 DUF724: Protein of un 53.0 1.1E+02 0.0023 32.0 9.9 40 157-196 112-151 (190)
328 PF12329 TMF_DNA_bd: TATA elem 52.5 1.2E+02 0.0025 27.1 8.7 24 225-248 37-60 (74)
329 KOG4360 Uncharacterized coiled 52.4 2.6E+02 0.0055 33.7 13.6 25 122-146 170-194 (596)
330 PF03904 DUF334: Domain of unk 52.3 1.9E+02 0.0042 31.2 11.7 32 261-292 113-144 (230)
331 KOG0804 Cytoplasmic Zn-finger 52.3 2E+02 0.0043 34.1 12.5 32 214-245 389-420 (493)
332 KOG4809 Rab6 GTPase-interactin 52.1 1.6E+02 0.0036 35.5 12.1 89 157-245 347-452 (654)
333 PF08172 CASP_C: CASP C termin 51.5 75 0.0016 34.4 8.8 49 225-292 90-138 (248)
334 KOG0243 Kinesin-like protein [ 51.1 6.2E+02 0.013 33.0 17.4 104 131-234 403-514 (1041)
335 PRK15422 septal ring assembly 51.0 1.8E+02 0.0039 26.8 9.6 40 157-196 6-45 (79)
336 TIGR03752 conj_TIGR03752 integ 51.0 55 0.0012 38.5 8.1 38 214-251 66-103 (472)
337 PF07462 MSP1_C: Merozoite sur 50.9 27 0.00058 41.6 5.7 64 286-363 131-198 (574)
338 KOG0994 Extracellular matrix g 50.9 6.6E+02 0.014 33.4 17.3 15 5-19 1444-1458(1758)
339 PRK09343 prefoldin subunit bet 50.8 1.8E+02 0.0039 28.0 10.4 27 125-151 14-40 (121)
340 PRK14950 DNA polymerase III su 50.6 34 0.00074 40.7 6.6 14 279-292 264-277 (585)
341 PRK10869 recombination and rep 50.3 5.2E+02 0.011 31.0 17.5 23 278-300 344-366 (553)
342 PRK14954 DNA polymerase III su 49.3 25 0.00055 42.4 5.4 28 635-665 552-579 (620)
343 PF14988 DUF4515: Domain of un 49.0 3.5E+02 0.0075 28.6 18.0 44 157-200 20-64 (206)
344 COG4372 Uncharacterized protei 49.0 3.8E+02 0.0083 31.4 13.9 23 124-146 136-158 (499)
345 PRK09841 cryptic autophosphory 48.6 1.2E+02 0.0026 37.2 10.9 29 126-154 268-296 (726)
346 PTZ00446 vacuolar sorting prot 48.3 3.5E+02 0.0077 28.5 13.9 30 122-151 24-53 (191)
347 PRK10781 rcsF outer membrane l 48.3 17 0.00037 36.0 3.1 9 553-561 84-92 (133)
348 KOG4302 Microtubule-associated 47.6 6.5E+02 0.014 31.3 16.8 87 214-305 233-320 (660)
349 PF05529 Bap31: B-cell recepto 47.2 82 0.0018 32.0 7.9 28 157-184 163-190 (192)
350 cd07665 BAR_SNX1 The Bin/Amphi 47.2 4E+02 0.0086 28.8 16.5 32 275-307 184-215 (234)
351 COG3206 GumC Uncharacterized p 46.2 3.6E+02 0.0078 31.0 13.7 98 157-254 287-392 (458)
352 PF10224 DUF2205: Predicted co 46.0 91 0.002 28.6 7.1 46 223-287 18-63 (80)
353 PF10226 DUF2216: Uncharacteri 45.9 3.9E+02 0.0086 28.3 13.8 41 214-254 48-91 (195)
354 KOG0239 Kinesin (KAR3 subfamil 45.9 2.7E+02 0.0058 34.4 13.1 36 214-249 255-290 (670)
355 PF08006 DUF1700: Protein of u 45.8 32 0.00069 34.5 4.7 58 582-639 3-61 (181)
356 PF13166 AAA_13: AAA domain 45.4 5.6E+02 0.012 30.9 15.7 7 357-363 513-519 (712)
357 KOG1962 B-cell receptor-associ 45.4 32 0.0007 36.6 4.8 64 219-287 149-212 (216)
358 KOG0709 CREB/ATF family transc 45.3 47 0.001 39.0 6.4 50 152-201 269-318 (472)
359 PF05266 DUF724: Protein of un 45.2 3.4E+02 0.0073 28.4 12.0 64 157-234 88-151 (190)
360 PF13870 DUF4201: Domain of un 45.2 2.8E+02 0.006 27.9 11.2 26 169-194 6-31 (177)
361 COG4026 Uncharacterized protei 45.0 58 0.0013 35.2 6.6 26 223-248 137-162 (290)
362 PF04012 PspA_IM30: PspA/IM30 44.6 3.7E+02 0.0081 27.7 17.6 102 124-237 36-142 (221)
363 PF13870 DUF4201: Domain of un 44.5 3.4E+02 0.0075 27.2 19.4 31 121-151 2-32 (177)
364 PRK12704 phosphodiesterase; Pr 44.3 6.3E+02 0.014 30.2 18.2 51 211-261 104-154 (520)
365 PF03961 DUF342: Protein of un 44.1 1.1E+02 0.0024 35.2 9.3 75 121-195 330-408 (451)
366 KOG3564 GTPase-activating prot 44.1 1.2E+02 0.0026 36.1 9.3 70 123-192 26-100 (604)
367 PF09744 Jnk-SapK_ap_N: JNK_SA 43.9 2E+02 0.0044 29.2 10.0 59 170-245 90-148 (158)
368 PLN03132 NADH dehydrogenase (u 43.5 13 0.00029 43.3 1.8 15 718-732 358-372 (461)
369 KOG0559 Dihydrolipoamide succi 43.5 41 0.0009 38.5 5.5 23 591-613 252-275 (457)
370 PRK11020 hypothetical protein; 43.4 63 0.0014 31.5 5.9 51 235-292 5-55 (118)
371 PF06005 DUF904: Protein of un 43.3 1.5E+02 0.0033 26.5 8.0 21 216-236 20-40 (72)
372 PF03962 Mnd1: Mnd1 family; I 43.2 2E+02 0.0044 29.8 10.1 70 214-289 62-131 (188)
373 PF01486 K-box: K-box region; 43.1 1.9E+02 0.0041 26.6 8.9 32 214-245 68-99 (100)
374 PF14282 FlxA: FlxA-like prote 43.1 1.5E+02 0.0032 28.0 8.3 24 122-145 16-39 (106)
375 PF06428 Sec2p: GDP/GTP exchan 43.0 35 0.00076 32.3 4.2 64 223-298 10-74 (100)
376 KOG4425 Uncharacterized conser 42.9 35 0.00076 40.2 4.9 13 762-774 510-522 (900)
377 PF06248 Zw10: Centromere/kine 42.7 6.6E+02 0.014 30.0 15.9 25 127-151 9-33 (593)
378 TIGR01000 bacteriocin_acc bact 42.7 5.9E+02 0.013 29.4 15.7 23 169-191 172-194 (457)
379 PF10458 Val_tRNA-synt_C: Valy 42.6 1E+02 0.0022 26.6 6.6 65 218-287 1-65 (66)
380 PF07174 FAP: Fibronectin-atta 42.5 57 0.0012 36.0 6.2 8 525-532 107-114 (297)
381 KOG2236 Uncharacterized conser 42.5 26 0.00056 40.9 3.9 14 291-307 265-278 (483)
382 PF14932 HAUS-augmin3: HAUS au 42.3 1.3E+02 0.0029 32.3 9.0 84 213-297 67-150 (256)
383 PRK03947 prefoldin subunit alp 42.3 2.8E+02 0.0061 26.7 10.4 38 214-251 94-131 (140)
384 TIGR02449 conserved hypothetic 41.9 1.1E+02 0.0024 27.0 6.8 29 217-245 3-31 (65)
385 PF02403 Seryl_tRNA_N: Seryl-t 41.7 1.9E+02 0.0042 26.6 8.8 64 125-195 36-100 (108)
386 KOG4196 bZIP transcription fac 41.7 1.6E+02 0.0035 29.4 8.5 82 157-251 34-118 (135)
387 KOG1937 Uncharacterized conser 41.5 6.9E+02 0.015 29.9 19.1 76 125-200 231-324 (521)
388 PRK14954 DNA polymerase III su 41.5 40 0.00086 40.8 5.4 11 127-137 109-119 (620)
389 PF06637 PV-1: PV-1 protein (P 40.8 6.6E+02 0.014 29.4 16.8 99 217-320 288-387 (442)
390 PF01920 Prefoldin_2: Prefoldi 40.7 2.7E+02 0.0059 25.0 9.6 36 211-246 66-101 (106)
391 PF15035 Rootletin: Ciliary ro 40.5 3.1E+02 0.0067 28.5 10.9 96 216-318 18-138 (182)
392 PF02994 Transposase_22: L1 tr 40.1 35 0.00077 38.5 4.5 44 209-252 146-189 (370)
393 KOG1785 Tyrosine kinase negati 40.0 32 0.00069 39.7 4.0 12 43-54 35-46 (563)
394 KOG2264 Exostosin EXT1L [Signa 39.9 1.1E+02 0.0024 37.0 8.4 44 135-181 96-140 (907)
395 PLN02983 biotin carboxyl carri 39.8 16 0.00034 40.1 1.6 11 523-533 201-211 (274)
396 PF14915 CCDC144C: CCDC144C pr 39.5 6.1E+02 0.013 28.7 19.8 22 295-316 220-241 (305)
397 PF09006 Surfac_D-trimer: Lung 39.4 60 0.0013 27.1 4.4 29 171-199 1-29 (46)
398 PF04625 DEC-1_N: DEC-1 protei 39.3 45 0.00097 37.6 4.9 13 751-763 386-398 (407)
399 PF07989 Microtub_assoc: Micro 39.0 2.5E+02 0.0054 25.3 8.7 34 215-248 37-70 (75)
400 KOG3253 Predicted alpha/beta h 39.0 30 0.00064 42.0 3.7 28 467-497 748-775 (784)
401 KOG4001 Axonemal dynein light 38.9 1.3E+02 0.0029 32.1 8.0 58 124-181 184-247 (259)
402 COG0497 RecN ATPase involved i 38.6 8.1E+02 0.018 29.9 18.7 52 264-315 328-387 (557)
403 PF11180 DUF2968: Protein of u 38.1 2.5E+02 0.0053 29.8 9.7 43 124-166 111-154 (192)
404 KOG4715 SWI/SNF-related matrix 37.9 1.3E+02 0.0027 34.2 8.0 28 124-151 220-247 (410)
405 PRK00888 ftsB cell division pr 37.7 56 0.0012 30.9 4.7 33 215-247 28-60 (105)
406 PRK14141 heat shock protein Gr 37.6 3.9E+02 0.0085 28.5 11.3 44 104-151 21-64 (209)
407 PF05700 BCAS2: Breast carcino 37.5 1.9E+02 0.0041 30.4 9.1 72 170-241 137-209 (221)
408 PF06705 SF-assemblin: SF-asse 37.5 5.3E+02 0.011 27.4 19.5 35 214-248 99-134 (247)
409 PF11932 DUF3450: Protein of u 37.2 2.2E+02 0.0048 30.2 9.6 37 157-193 44-80 (251)
410 PF09728 Taxilin: Myosin-like 37.1 6.3E+02 0.014 28.2 20.6 36 121-156 18-54 (309)
411 PF13874 Nup54: Nucleoporin co 37.1 98 0.0021 30.4 6.4 32 158-189 33-64 (141)
412 KOG0566 Inositol-1,4,5-triphos 36.9 36 0.00079 42.9 4.1 13 353-365 875-887 (1080)
413 PF05103 DivIVA: DivIVA protei 36.8 39 0.00084 31.7 3.5 27 262-288 101-127 (131)
414 PF06156 DUF972: Protein of un 36.4 1.3E+02 0.0027 28.8 6.8 44 157-200 10-53 (107)
415 PRK10361 DNA recombination pro 36.2 8.2E+02 0.018 29.2 19.2 52 262-320 141-196 (475)
416 PF06156 DUF972: Protein of un 35.9 42 0.00092 32.0 3.6 25 265-289 33-57 (107)
417 PF07058 Myosin_HC-like: Myosi 35.8 4.4E+02 0.0095 30.0 11.6 37 220-256 58-94 (351)
418 KOG3859 Septins (P-loop GTPase 35.8 2.6E+02 0.0057 31.7 9.9 65 131-195 329-396 (406)
419 smart00338 BRLZ basic region l 35.6 90 0.002 26.4 5.2 37 156-192 27-63 (65)
420 PF09766 FimP: Fms-interacting 35.3 1.6E+02 0.0036 33.2 8.7 44 157-200 14-57 (355)
421 PF07321 YscO: Type III secret 35.2 3.4E+02 0.0074 27.5 10.0 66 123-188 65-135 (152)
422 TIGR02231 conserved hypothetic 35.2 2.3E+02 0.005 33.2 10.2 26 123-148 69-94 (525)
423 PF09738 DUF2051: Double stran 35.1 6.9E+02 0.015 28.1 13.2 121 170-302 113-239 (302)
424 PF03962 Mnd1: Mnd1 family; I 34.8 5.4E+02 0.012 26.7 11.6 15 260-274 134-148 (188)
425 PF11559 ADIP: Afadin- and alp 34.8 4.4E+02 0.0096 25.7 13.7 40 157-196 82-121 (151)
426 PRK13729 conjugal transfer pil 34.7 1E+02 0.0022 36.5 7.0 22 171-192 99-120 (475)
427 KOG4438 Centromere-associated 34.7 8.4E+02 0.018 28.9 16.1 33 216-248 250-282 (446)
428 KOG0994 Extracellular matrix g 34.6 1.3E+03 0.028 31.0 19.0 67 214-285 1619-1706(1758)
429 TIGR02231 conserved hypothetic 34.5 2.2E+02 0.0047 33.5 9.8 34 217-250 134-167 (525)
430 KOG0992 Uncharacterized conser 34.4 4.7E+02 0.01 31.6 12.1 108 122-230 285-419 (613)
431 PF00170 bZIP_1: bZIP transcri 34.3 1.1E+02 0.0024 25.9 5.5 35 157-191 28-62 (64)
432 COG4942 Membrane-bound metallo 34.3 8.4E+02 0.018 28.8 18.9 70 214-299 161-230 (420)
433 KOG4425 Uncharacterized conser 34.2 74 0.0016 37.7 5.8 9 445-453 44-52 (900)
434 PF15003 HAUS2: HAUS augmin-li 34.2 1.3E+02 0.0029 33.2 7.4 62 636-698 137-201 (277)
435 PF03112 DUF244: Uncharacteriz 33.8 2.6E+02 0.0057 28.6 8.8 74 127-200 23-108 (158)
436 PRK12270 kgd alpha-ketoglutara 33.8 69 0.0015 41.1 5.8 17 696-712 357-376 (1228)
437 PF05701 WEMBL: Weak chloropla 33.1 9E+02 0.02 28.8 20.6 26 158-183 161-186 (522)
438 KOG1103 Predicted coiled-coil 32.8 8.4E+02 0.018 28.3 21.2 71 120-193 81-156 (561)
439 PF12808 Mto2_bdg: Micro-tubul 32.7 1E+02 0.0022 26.3 4.9 37 157-193 6-46 (52)
440 PF15397 DUF4618: Domain of un 32.6 7.2E+02 0.016 27.5 17.3 32 267-299 199-230 (258)
441 PF10224 DUF2205: Predicted co 32.3 1.4E+02 0.0031 27.4 6.1 42 157-198 25-66 (80)
442 PLN03188 kinesin-12 family pro 32.3 8.3E+02 0.018 32.7 14.7 49 237-286 1199-1250(1320)
443 PF07989 Microtub_assoc: Micro 32.0 2.4E+02 0.0052 25.4 7.5 59 226-288 5-63 (75)
444 PRK13855 type IV secretion sys 31.8 70 0.0015 36.7 5.0 9 519-527 108-116 (376)
445 PRK13169 DNA replication intia 31.7 53 0.0011 31.6 3.5 53 235-287 1-55 (110)
446 PF06810 Phage_GP20: Phage min 31.4 1.5E+02 0.0032 29.9 6.7 70 120-195 8-81 (155)
447 smart00338 BRLZ basic region l 31.3 94 0.002 26.3 4.7 28 214-241 33-60 (65)
448 PF07227 DUF1423: Protein of u 31.0 8.4E+02 0.018 29.0 13.4 34 157-190 352-385 (446)
449 PF07794 DUF1633: Protein of u 31.0 2.3E+02 0.005 34.0 8.9 25 170-194 598-622 (790)
450 PF12329 TMF_DNA_bd: TATA elem 30.9 2.2E+02 0.0049 25.3 7.1 37 157-193 35-71 (74)
451 PF04859 DUF641: Plant protein 30.7 1.2E+02 0.0025 30.2 5.7 110 124-244 11-131 (131)
452 PF05278 PEARLI-4: Arabidopsis 30.7 7.3E+02 0.016 27.6 12.2 37 214-250 221-257 (269)
453 PRK00106 hypothetical protein; 30.6 3.9E+02 0.0085 32.2 11.0 18 720-737 498-515 (535)
454 PF11408 Helicase_Sgs1: Sgs1 R 30.5 75 0.0016 29.1 4.1 62 639-701 3-67 (80)
455 PRK14127 cell division protein 30.4 1E+02 0.0023 29.6 5.3 60 164-223 32-101 (109)
456 cd00890 Prefoldin Prefoldin is 30.4 4.5E+02 0.0097 24.4 10.1 32 169-200 6-37 (129)
457 KOG0391 SNF2 family DNA-depend 30.2 69 0.0015 41.8 5.0 37 146-182 1252-1290(1958)
458 PF05791 Bacillus_HBL: Bacillu 30.1 1.5E+02 0.0033 30.4 6.7 68 119-186 104-180 (184)
459 KOG0247 Kinesin-like protein [ 30.0 8.7E+02 0.019 30.7 13.7 74 172-245 523-609 (809)
460 PF15456 Uds1: Up-regulated Du 30.0 3.5E+02 0.0076 26.5 8.9 27 157-184 24-50 (124)
461 PRK00106 hypothetical protein; 30.0 1.1E+03 0.023 28.7 20.0 52 210-261 118-169 (535)
462 COG5509 Uncharacterized small 30.0 65 0.0014 28.3 3.4 26 170-195 26-51 (65)
463 COG1730 GIM5 Predicted prefold 30.0 4.7E+02 0.01 26.5 9.9 39 214-252 94-132 (145)
464 PF11180 DUF2968: Protein of u 29.9 4.9E+02 0.011 27.6 10.3 75 170-247 113-187 (192)
465 PF10267 Tmemb_cc2: Predicted 29.9 9.5E+02 0.021 28.0 13.9 35 120-154 207-241 (395)
466 KOG4797 Transcriptional regula 29.8 86 0.0019 30.5 4.5 41 124-164 66-109 (123)
467 PF11544 Spc42p: Spindle pole 29.8 1.6E+02 0.0034 27.0 5.9 31 157-187 7-37 (76)
468 COG4026 Uncharacterized protei 29.6 3.8E+02 0.0083 29.3 9.6 32 214-245 156-187 (290)
469 PF04625 DEC-1_N: DEC-1 protei 29.6 79 0.0017 35.7 4.9 12 524-535 175-186 (407)
470 PRK10869 recombination and rep 29.5 1.1E+03 0.023 28.5 14.7 82 216-299 298-379 (553)
471 PRK12704 phosphodiesterase; Pr 29.4 7.6E+02 0.016 29.6 13.1 13 723-735 486-498 (520)
472 PRK14151 heat shock protein Gr 28.8 4.6E+02 0.01 27.1 9.9 84 118-201 20-110 (176)
473 PRK14154 heat shock protein Gr 28.6 5.8E+02 0.013 27.2 10.8 86 116-201 50-142 (208)
474 PF12761 End3: Actin cytoskele 28.5 3.2E+02 0.0069 29.0 8.7 35 260-301 159-193 (195)
475 COG4372 Uncharacterized protei 28.3 1E+03 0.023 28.0 19.8 16 284-299 264-279 (499)
476 TIGR00293 prefoldin, archaeal 28.0 4.9E+02 0.011 24.5 9.4 82 120-201 1-125 (126)
477 PF09798 LCD1: DNA damage chec 27.9 1.5E+02 0.0033 36.4 7.2 45 157-201 20-65 (654)
478 PF05529 Bap31: B-cell recepto 27.9 4E+02 0.0087 27.1 9.3 29 167-195 159-187 (192)
479 PF15254 CCDC14: Coiled-coil d 27.8 1.3E+03 0.028 29.4 14.7 130 116-245 418-560 (861)
480 KOG4809 Rab6 GTPase-interactin 27.8 1.2E+03 0.026 28.6 18.9 167 121-301 334-551 (654)
481 PF05783 DLIC: Dynein light in 27.7 2.2E+02 0.0047 33.7 8.2 117 459-584 338-454 (472)
482 PLN02983 biotin carboxyl carri 27.7 92 0.002 34.4 4.9 60 465-524 137-196 (274)
483 PRK03947 prefoldin subunit alp 27.6 5E+02 0.011 25.0 9.5 95 157-251 8-138 (140)
484 PRK11519 tyrosine kinase; Prov 27.6 9.6E+02 0.021 29.6 13.9 130 160-291 258-400 (719)
485 TIGR03017 EpsF chain length de 27.4 9.4E+02 0.02 27.2 15.5 116 130-252 256-373 (444)
486 PF12777 MT: Microtubule-bindi 27.4 4.8E+02 0.01 29.2 10.5 102 162-274 8-110 (344)
487 PF14916 CCDC92: Coiled-coil d 27.2 61 0.0013 28.3 2.8 41 169-236 3-43 (60)
488 PRK09841 cryptic autophosphory 27.2 1.1E+03 0.025 29.0 14.5 133 159-313 257-397 (726)
489 PRK13169 DNA replication intia 27.1 2.2E+02 0.0049 27.5 6.8 45 157-201 10-54 (110)
490 PRK06568 F0F1 ATP synthase sub 26.9 6.8E+02 0.015 25.4 11.0 91 133-226 29-127 (154)
491 PF08826 DMPK_coil: DMPK coile 26.9 2.7E+02 0.0058 24.4 6.6 58 179-236 4-61 (61)
492 PF06632 XRCC4: DNA double-str 26.7 3.7E+02 0.0081 30.6 9.5 72 123-194 142-219 (342)
493 PRK10929 putative mechanosensi 26.6 1.6E+03 0.035 29.7 20.0 192 121-312 61-274 (1109)
494 PF13908 Shisa: Wnt and FGF in 26.6 1E+02 0.0022 31.0 4.8 43 468-510 136-178 (179)
495 COG4913 Uncharacterized protei 26.5 1.5E+03 0.032 29.1 18.8 197 99-310 585-794 (1104)
496 KOG4787 Uncharacterized conser 26.5 3.3E+02 0.0072 33.3 9.3 103 142-247 440-548 (852)
497 PF01166 TSC22: TSC-22/dip/bun 26.3 73 0.0016 27.8 3.1 22 126-147 15-36 (59)
498 TIGR00634 recN DNA repair prot 26.2 9E+02 0.02 28.8 13.1 122 127-253 250-378 (563)
499 COG4982 3-oxoacyl-[acyl-carrie 26.2 1.1E+02 0.0023 37.8 5.4 91 467-567 10-100 (866)
500 KOG1899 LAR transmembrane tyro 26.1 7.8E+02 0.017 30.7 12.2 143 159-301 108-264 (861)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=2.8e-10 Score=131.44 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=37.8
Q ss_pred HHHh-hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 271 LVLR-HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 271 ~~Lr-~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
..|+ ..|+.|+.|+++|.+|+++|++||++ |+.| +|.|++++
T Consensus 342 ~~l~~i~n~~ldvqlkvfdE~~e~Dl~el~~-rled--ir~emDd~ 384 (1102)
T KOG1924|consen 342 PDLTEINNDILDVQLKVFDEHKEDDLEELSG-RLED--IRAEMDDA 384 (1102)
T ss_pred HHhhhhccHHHHHHHHHHhhhhhhhHHHHHh-HHHh--hhhhhccH
Confidence 3444 58999999999999999999999999 9999 88999987
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=7e-08 Score=112.15 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=41.6
Q ss_pred hhhhhHHhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhcCC
Q 003863 647 DLKKLESEVSYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREFQI 703 (790)
Q Consensus 647 ~L~~l~~e~s~~kddp~~pc~~al~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~~I 703 (790)
..++|+..+++|++-+. --|.-.-||..+.++..+.++.|-.+-.-..+-|++.|=
T Consensus 909 ~ik~Le~dlk~~~~~~~-e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~e 964 (1102)
T KOG1924|consen 909 QIKKLERDLKNFKIAGN-EHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGE 964 (1102)
T ss_pred HHHHHHHHHHhcCCCCc-chhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888887542 347778899999999877777776666667777877653
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.45 E-value=0.0049 Score=73.67 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLE 182 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------------KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLe 182 (790)
-++.||.+||.-++....-|..|..++.-+ +|.|. +.+|.+..+.....+-.|.+++...+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999988888888875544 22222 44444455555557778888888888
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhh---------ccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 183 DEKTSLSEQLAALSVILERKNDNKNAI---------NMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 183 aE~~rLq~qv~e~~~~~~q~ee~~~~~---------~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
.....++.|+.+--+.++++++.+.+- +-. .++.++||.|+..||+..+..+++++.|...+......
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899888888887776655443 112 27889999999999999999999999998888544432
Q ss_pred hhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863 251 LTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (790)
Q Consensus 251 ~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE 285 (790)
-.. +..|.+ .+-.....|++.|..|..-|-
T Consensus 582 ~~e--~~~~~e---~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 582 EKE--SEKDTE---VLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred Hhh--hhhhHH---HHHHHHHHHHHHHHHHHHhhh
Confidence 101 111222 233455556666655554443
No 4
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.97 E-value=0.025 Score=58.13 Aligned_cols=122 Identities=25% Similarity=0.337 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~ 197 (790)
+..|++.||..+.+|++.-..|..+-... +||-. |..||.+...-.++.+.|+.++..|..++..|+-||-+|-.
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47899999999999999999999988888 77776 77888888888889999999999999999999999988877
Q ss_pred HHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 198 ILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 198 ~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
+.-|.+..+. +....+.+|..=|+|.|...-+|-.+++.|-..|..+
T Consensus 145 l~~~~da~l~---e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 145 LICQRDAILS---ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7765443221 1236788899999999999999999999988887543
No 5
>PRK11637 AmiB activator; Provisional
Probab=96.89 E-value=0.099 Score=58.86 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW-K---RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-K---EQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
+...+|+.|+..+..++.+-..++.++.+. + ..+. |..++.+|.....+|..++.+|..++.+...+++++...
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555555555444444444 1 1111 444444444444444444444444444444444444433
No 6
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=96.80 E-value=0.00097 Score=84.71 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=5.1
Q ss_pred hhHHhhhhh
Q 003863 750 YMLLQGVRF 758 (790)
Q Consensus 750 ~lL~qgvrF 758 (790)
.+.||.|+|
T Consensus 1917 QLiyq~V~~ 1925 (2039)
T PRK15319 1917 QVVWQNYSA 1925 (2039)
T ss_pred EEEEEEecc
Confidence 455665555
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.72 E-value=0.25 Score=52.85 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=45.7
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..+..|..++..|+..|..|+....++-.+++...... ...|..+.+|+..||........++..|-..+-.
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~--------~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY--------QAEIAELEEELAELREEMARQLREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH--------HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444332222 2245566777777777666777777776666666
Q ss_pred hHHHHH-HHHHhh
Q 003863 294 EVEELA-YLRWVN 305 (790)
Q Consensus 294 dvEELv-~LR~~N 305 (790)
.--|+. |++.+.
T Consensus 295 Ld~EIatYR~LLE 307 (312)
T PF00038_consen 295 LDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 666666 655543
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.64 E-value=0.18 Score=57.80 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-chh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKR-NPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKE-QE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
..+|..|+..+..++.+-..++..+.++++ ... +.++++++.....+...+..++..|+.+...+..++.+
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~ 252 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344445555555554444444444444422 222 55555555555555555555555555555555444333
No 9
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=96.40 E-value=0.0031 Score=80.39 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.7
Q ss_pred HHHhhccccCC
Q 003863 530 FYHSLMKRDSR 540 (790)
Q Consensus 530 lYrsL~~r~~~ 540 (790)
|.++|..|.+.
T Consensus 1745 fl~TLHDR~Ge 1755 (2039)
T PRK15319 1745 QMQTLYDREGS 1755 (2039)
T ss_pred hcccHHHcCCc
Confidence 44556556543
No 10
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=96.38 E-value=0.0027 Score=72.40 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhc
Q 003863 670 LKKMVSLSEKMERTVYALLRTRETLMRNCREF 701 (790)
Q Consensus 670 l~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~ 701 (790)
-.+|..+|+.|.+.|.-|--.---...||-.|
T Consensus 582 ~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSF 613 (817)
T KOG1925|consen 582 RARLTHFLDQCARRIAMLKIVHRRVCNRFHSF 613 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888887755554444455666554
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.37 E-value=0.37 Score=59.05 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQA 146 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~ 146 (790)
.+..++..++..+..++..-..++.
T Consensus 688 ~l~~~l~~~~~~~~~~~~~l~~l~~ 712 (1179)
T TIGR02168 688 ELEEKIAELEKALAELRKELEELEE 712 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444433333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.32 E-value=0.36 Score=59.11 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAEL 148 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eL 148 (790)
+..++..++..+..++..-..++.++
T Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1179)
T TIGR02168 710 LEEELEQLRKELEELSRQISALRKDL 735 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444444433333333
No 13
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=96.21 E-value=0.013 Score=54.36 Aligned_cols=84 Identities=25% Similarity=0.230 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhh---------hhcccccchHhHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKN---------AINMGSSSSQNLEMEVVELR 227 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~---------~~~e~e~~~~~LE~Ev~ELR 227 (790)
..||++||+....|...|.++|+-|+.+|+.|..++..|..--........ +....+..++-.+.++.+|.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999988653332110111 11123466888999999999
Q ss_pred HHHHHHHHHHhhh
Q 003863 228 RLNKELQMEKRNL 240 (790)
Q Consensus 228 r~NkeLQ~EkreL 240 (790)
+...+||+|||-|
T Consensus 83 ~kv~eLq~ENRvl 95 (96)
T PF11365_consen 83 GKVMELQYENRVL 95 (96)
T ss_pred hHHHHHhhccccc
Confidence 9999999999854
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.21 E-value=0.45 Score=58.64 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSE 150 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlE 150 (790)
.+..+|..++..+..+++.-..++.++.+
T Consensus 255 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666655555544
No 15
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.20 E-value=0.2 Score=55.05 Aligned_cols=142 Identities=15% Similarity=0.249 Sum_probs=92.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-------KEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
.....-++.|+..++.|++.-..|..|...+ .|+|. |.+-=+||...+.+|..|...++.-..++.+.|++
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999998766655 44454 88888899999999999999998888888888888
Q ss_pred HHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHH
Q 003863 192 LAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEAL 271 (790)
Q Consensus 192 v~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~ 271 (790)
|..+..-.- +.+++++.+-.|-.||+.....-..--+.|+..|...+.+++.+ -.|...+++|..
T Consensus 236 It~Llsqiv----------dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~-----~~mL~EaQEElk 300 (306)
T PF04849_consen 236 ITSLLSQIV----------DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC-----MAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHH----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 877654322 12344455555555554444333333333333333333333221 235566788888
Q ss_pred HHhhhc
Q 003863 272 VLRHTN 277 (790)
Q Consensus 272 ~Lr~~N 277 (790)
.||..|
T Consensus 301 ~lR~~~ 306 (306)
T PF04849_consen 301 TLRKRT 306 (306)
T ss_pred HhhCCC
Confidence 888654
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.17 E-value=0.39 Score=60.71 Aligned_cols=87 Identities=23% Similarity=0.250 Sum_probs=41.6
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh--HHHHHHHHHHHHhhhchhHHHHHHHHhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~--~va~~~eE~~~Lr~~NE~L~~QlE~f~~d 290 (790)
+.....+..++.++.....+++.+...+...++..+..+..+....+.- -+..+.++...++...+++..+|..++..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (1163)
T COG1196 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666655554433221110 11223333333333444444555555544
Q ss_pred hhchHHHHH
Q 003863 291 RLNEVEELA 299 (790)
Q Consensus 291 R~~dvEELv 299 (790)
.......+.
T Consensus 455 ~~~~~~~~~ 463 (1163)
T COG1196 455 LEELRDRLK 463 (1163)
T ss_pred HHHHHHHHH
Confidence 444444443
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.16 E-value=0.53 Score=58.01 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+..++..+...+..++..-..++.++.++
T Consensus 249 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 277 (1164)
T TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEEL 277 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888888777
No 18
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.08 E-value=0.35 Score=55.44 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQES 137 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eL 137 (790)
.+..+|..|...+..+
T Consensus 185 ~l~~~i~~l~~~i~~~ 200 (562)
T PHA02562 185 TLDMKIDHIQQQIKTY 200 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 19
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.08 E-value=0.0054 Score=72.83 Aligned_cols=45 Identities=29% Similarity=0.211 Sum_probs=27.7
Q ss_pred ccccccccccccchhccccc--CCCC--------CCCCCCccccccccCCCCcCh
Q 003863 79 NSIVASHSRVKRSLIGDLAC--SMNP--------AQVHPNSYQTHRRQSSGSRDL 123 (790)
Q Consensus 79 n~~~~~~~r~~~~l~~dl~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~ 123 (790)
|++...+.|.+-++.+.|.+ =+++ +|+-.+.++..|||...|.-+
T Consensus 26 ~S~~~~n~rtktsvl~~lasic~v~gg~E~~~~a~~~f~~v~qe~~rf~~lm~~~ 80 (830)
T KOG1923|consen 26 NSSKHTNLRTKTSVLGSLASICYVIGGSEQSWPAAPVFSKVNQEPRRFNTLMYVH 80 (830)
T ss_pred HhhccCCcchHHHHHHHHHHHHHHhcCceeecccCcchhhhhcCccccccccccc
Confidence 77777888888888777765 2222 333344445777777666544
No 20
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.02 E-value=0.012 Score=70.48 Aligned_cols=167 Identities=22% Similarity=0.273 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH------
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ------ 191 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q------ 191 (790)
...++..|+..+..|+.....|..++.++ +.+.. +..||+|+.+...|++.|+..+.++..|.......
T Consensus 362 ~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~ 441 (722)
T PF05557_consen 362 LQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence 46777888888888888888888888888 33334 88999999999999999999999988877665422
Q ss_pred ---HHHHHHHHH-----------H-Hhhh-------hhhhcc--------------c---ccchHhHHHHHHHHHHHHHH
Q 003863 192 ---LAALSVILE-----------R-KNDN-------KNAINM--------------G---SSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 192 ---v~e~~~~~~-----------q-~ee~-------~~~~~e--------------~---e~~~~~LE~Ev~ELRr~Nke 232 (790)
+.++..... + +++. .....+ + ...+..|..++.+|++.+..
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~ 521 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENER 521 (722)
T ss_dssp ----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111100000 0 0000 000000 0 13455677777777777777
Q ss_pred HHHHHhhhhhhhhh---------hhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhh
Q 003863 233 LQMEKRNLACKFSS---------MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (790)
Q Consensus 233 LQ~EkreL~~KLd~---------ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~ 289 (790)
|+.++..|..+|.. ...++=.+...+-++...-.++++..||.+|++|..++..+..
T Consensus 522 L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 522 LRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777765 1122222222233444444479999999999999999965543
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.01 E-value=0.3 Score=58.94 Aligned_cols=165 Identities=21% Similarity=0.274 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH-------------
Q 003863 129 SLRSLLQESKEREFKLQAELSEW---KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE------------- 190 (790)
Q Consensus 129 ~LR~~V~eLqeRE~kLE~eLlEy---KEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~------------- 190 (790)
.||.-|..|+.+-.-||.++.++ |+++. +..||++|..+...--.|..++...+...+.-++
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 34555777777777888888887 77776 9999999998887666666665544433333222
Q ss_pred -HHHHHHHHHHH--Hhhhhhhhccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc--ChhhH
Q 003863 191 -QLAALSVILER--KNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA--SESDI 262 (790)
Q Consensus 191 -qv~e~~~~~~q--~ee~~~~~~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~--~Es~~ 262 (790)
+..+.++.+.+ +.|..+...|+ +..+..||.|+.+||..+++=+.+...|-.=|.+.|.+..-|-+. -|.
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt-- 614 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET-- 614 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 33333333333 22222222333 578889999999999886665556666666666666554433221 111
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHH
Q 003863 263 ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (790)
Q Consensus 263 va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~ 300 (790)
+||.| .+.. =.+..+|||+++...-.--.|++.
T Consensus 615 --riKld--Lfsa-Lg~akrq~ei~~~~~~~~d~ei~~ 647 (697)
T PF09726_consen 615 --RIKLD--LFSA-LGDAKRQLEIAQGQLRKKDKEIEE 647 (697)
T ss_pred --HHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22322 2222 236677888766554444444444
No 22
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.01 E-value=0.0078 Score=71.55 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhhhhchHHHHHHH-HHhhHH
Q 003863 279 DLSKQVEGLQMSRLNEVEELAYL-RWVNSC 307 (790)
Q Consensus 279 ~L~~QlE~f~~dR~~dvEELv~L-R~~Nac 307 (790)
.|.+..+..-+-|....+||.++ +..+.|
T Consensus 200 sl~~er~~~~~~~~~~~dels~m~k~~~~~ 229 (830)
T KOG1923|consen 200 SLNKEREPQSYQRKALLDELSCMQKLSIEK 229 (830)
T ss_pred hhhhhhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34555556666677778888877 555544
No 23
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=95.98 E-value=0.018 Score=61.44 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=15.0
Q ss_pred ccccchhhhhhccCCCCCcc
Q 003863 379 DNVLDKTWVQLEEGRSPRRR 398 (790)
Q Consensus 379 ~~~id~~~~~s~~~~SPrR~ 398 (790)
.+|-|=.||-.+++.+--|.
T Consensus 54 pSlADv~wva~de~~~~~r~ 73 (253)
T PF05308_consen 54 PSLADVLWVANDEEESYARF 73 (253)
T ss_pred cchhhhcceeccccccccee
Confidence 45888999998888865543
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.97 E-value=0.55 Score=50.09 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=84.8
Q ss_pred HHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH----H-Hhhhhhhhccc-ccchHhHHHHHHHHHHHHHHHHH
Q 003863 162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE----R-KNDNKNAINMG-SSSSQNLEMEVVELRRLNKELQM 235 (790)
Q Consensus 162 ~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~----q-~ee~~~~~~e~-e~~~~~LE~Ev~ELRr~NkeLQ~ 235 (790)
+.+.....+++.|+.+|+-++.+...+.++......... + +-.++..+..+ +.+...|+.|+.+|......|+.
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566666666666666666555543322221 1 23345554444 48899999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (790)
Q Consensus 236 EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv 299 (790)
+...|..++...+..++... +.+.+++..+++....+..+.+.+..+=..++-.+.
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~--------~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~y 180 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAE--------ARLEEEVAEIREEGQELSSKREELKEKLDPELLSEY 180 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999998775533 345666777777666777777776665554444333
No 25
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.97 E-value=0.21 Score=61.40 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK 202 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ 202 (790)
+.+||.+|+.-| ++|+.||.|-= +-+.+|++.|....+|++.|.+.+.-+..+..+...-..+...++++.
T Consensus 175 L~velAdle~ki-------r~LrqElEEK~--enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a 245 (1195)
T KOG4643|consen 175 LEVELADLEKKI-------RTLRQELEEKF--ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA 245 (1195)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 455555555555 45555554322 117788888888888999999999888888888888777777777754
Q ss_pred hhhhhhhcccccchHhH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchh
Q 003863 203 NDNKNAINMGSSSSQNL---EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNED 279 (790)
Q Consensus 203 ee~~~~~~e~e~~~~~L---E~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~ 279 (790)
+-+. .--..++.++ -..|.||++-|..|+.++-=|...|+-.+++-.-+ .-|++|+ +.++.++-|+.++..
T Consensus 246 er~d---~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~--tleseii-qlkqkl~dm~~erdt 319 (1195)
T KOG4643|consen 246 ERPD---TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA--TLESEII-QLKQKLDDMRSERDT 319 (1195)
T ss_pred hcCC---CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC--ChHHHHH-HHHHHHHHHHHhhhh
Confidence 3321 1112344443 56788899999999988888888888877664221 1244444 344444444433333
No 26
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=95.84 E-value=0.011 Score=66.91 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=11.6
Q ss_pred chhHHHHHHhhccccC
Q 003863 524 APQVVEFYHSLMKRDS 539 (790)
Q Consensus 524 sPevvelYrsL~~r~~ 539 (790)
...+..+|..|...++
T Consensus 261 k~~~~AlFaqlNqGe~ 276 (480)
T KOG2675|consen 261 KGGRGALFAQLNQGEG 276 (480)
T ss_pred cccHHHHHHHHhccch
Confidence 3567789999887653
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.78 E-value=0.32 Score=57.05 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH-HHHH
Q 003863 225 ELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YLRW 303 (790)
Q Consensus 225 ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv-~LR~ 303 (790)
+||....+|+-.|.-|..+++.-+.++..-...-|. .++.-..++..||+++..|..+++.|-..+-+.-.|+. |++.
T Consensus 307 ~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~-~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 307 GLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ-ALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKL 385 (546)
T ss_pred chhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHH
Confidence 344444555555555566666555555443333433 23445678888999999999999999888888888888 8777
Q ss_pred hh
Q 003863 304 VN 305 (790)
Q Consensus 304 ~N 305 (790)
++
T Consensus 386 Le 387 (546)
T KOG0977|consen 386 LE 387 (546)
T ss_pred hc
Confidence 66
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.76 E-value=0.72 Score=54.22 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=16.2
Q ss_pred hHHHHHHHHhhhhhchHHHHHHHHHhhHHHhh
Q 003863 279 DLSKQVEGLQMSRLNEVEELAYLRWVNSCLRD 310 (790)
Q Consensus 279 ~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~ 310 (790)
.|.+++--...-|.--..||...|+-++.|+.
T Consensus 308 ~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~ 339 (546)
T PF07888_consen 308 LLRKELSDAVNVRDRTMAELHQARLEAAQLKL 339 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444444455555566555555555543
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.55 E-value=0.86 Score=58.45 Aligned_cols=37 Identities=3% Similarity=0.029 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863 265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301 (790)
Q Consensus 265 ~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L 301 (790)
.+.+++..+...=..+..+++..+..+....+.|-|+
T Consensus 988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555554444444444443
No 30
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.54 E-value=1.4 Score=50.35 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
...||..+...|..-+.+-.+|+.+|.+. +. |..++.+|..-.+.++.+++.|.-++...+.|+.|-
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~---e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSL---ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 47899999999999999999999888654 44 555666666555555555555555555555555444
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=95.48 E-value=1 Score=54.70 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
|..-.+.++..++.++.+-..|+..+..+.+.+. +.+++.++.....++..+..++..++.+...++.++..+-...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~ 238 (880)
T PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666544444 66666666666666666666666666666666665554444443
No 32
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=95.48 E-value=0.004 Score=68.04 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=0.0
Q ss_pred chhHHHHHHhhcccc
Q 003863 524 APQVVEFYHSLMKRD 538 (790)
Q Consensus 524 sPevvelYrsL~~r~ 538 (790)
++.+..+|-.|.+.+
T Consensus 259 ~~~~~AlFaeLN~G~ 273 (312)
T PF01213_consen 259 SGGMSALFAELNQGE 273 (312)
T ss_dssp ---------------
T ss_pred cccHHHHHHHHhccC
Confidence 678889999997643
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=95.43 E-value=1.1 Score=54.44 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..+.+++.++.+|+....+|+..+.++..+|.....++..+......+....+.+++..++..=+.+...++.+...+..
T Consensus 599 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 678 (880)
T PRK02224 599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555444222223334455555555554444554444444444443
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.40 E-value=0.98 Score=55.45 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=27.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASE 259 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~E 259 (790)
+..+++-.|++-++-.|.+|.-.+..|..++|.||+.|.-+..-.+
T Consensus 396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555666666666777777777777665544333
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.39 E-value=0.5 Score=60.51 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHhhhhhhhcccccchHhHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-------RKNDNKNAINMGSSSSQNLEMEVVELRRL 229 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~-------q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~ 229 (790)
+.+|+.++.....+++.|...+..++.+...++.++.++-.-.. +-.+.......++..+.+|..++.+++..
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888889999988888888888888888877621111 11112333344567777777777777777
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863 230 NKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR 274 (790)
Q Consensus 230 NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr 274 (790)
.+++..+...|..+++.++.....+....+. .+.++..+++.++
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 947 (1311)
T TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKET-SNKKAQDKVNDIK 947 (1311)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7777777777777777777665444332221 2234444444333
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.28 E-value=0.82 Score=57.57 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=52.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc--ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA--KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~--~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
..++.++-++.+|..++..||..+..|......-++-+.... ...=+++++.+++++..|...++.+..++...+..|
T Consensus 574 ~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~ 653 (1317)
T KOG0612|consen 574 KQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELK 653 (1317)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455555557778888888888777666554333222111111 112245888899999999988888887777665555
Q ss_pred hchHHHH
Q 003863 292 LNEVEEL 298 (790)
Q Consensus 292 ~~dvEEL 298 (790)
....+..
T Consensus 654 r~~~e~~ 660 (1317)
T KOG0612|consen 654 RENQERI 660 (1317)
T ss_pred HHHHHHH
Confidence 4444433
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.25 E-value=1.4 Score=58.34 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
..++.++.-+...+...+++...|+.+..+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~ 934 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKL 934 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777777777776666655554
No 38
>PLN03188 kinesin-12 family protein; Provisional
Probab=95.22 E-value=0.76 Score=58.17 Aligned_cols=78 Identities=26% Similarity=0.265 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHH
Q 003863 221 MEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (790)
Q Consensus 221 ~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~ 300 (790)
.|..=||..|+.||.|.|+-+.-..+|=..+-.|-...|..-+| ++-+....++|+.+-+||+.|....+.++.-|-+
T Consensus 1173 ker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a--~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1173 KERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA--QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555599999999975544444443333333322333343 6777777889999999999999988877666654
No 39
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.19 E-value=1.8 Score=44.76 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK 202 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ 202 (790)
+=.-|..|+.-|.+++.++...+..+.+. ..|..-|..-+..++.+...|+.++..|.+-+..-
T Consensus 25 NL~lIksLKeei~emkk~e~~~~k~m~ei----------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L 88 (201)
T PF13851_consen 25 NLELIKSLKEEIAEMKKKEERNEKLMAEI----------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888777666665 33455666666777777777777777776555543
Q ss_pred hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 203 NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 203 ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
..+..+-...++.+++|+.|-.-|.-....|+.|+.+|-.|...+=
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333345678888888888899999999999999998888663
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.16 E-value=0.97 Score=44.54 Aligned_cols=95 Identities=28% Similarity=0.267 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
+++|+.++..+-.||.-|..++..|+.+...+++++.+.-.....-......-..+..+|.-||.++.+....+++....
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666678888888888888888888888877665555322211111133466677777777766666666666
Q ss_pred Hhhhhhhhhhhhhhh
Q 003863 237 KRNLACKFSSMENQL 251 (790)
Q Consensus 237 kreL~~KLd~ae~~~ 251 (790)
.++.-.+.+..+-+.
T Consensus 103 l~e~d~~ae~~eRkv 117 (143)
T PF12718_consen 103 LREADVKAEHFERKV 117 (143)
T ss_pred HHHHHHHhHHHHHHH
Confidence 666666666555443
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.16 E-value=1.5 Score=55.81 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003863 126 ELDSLRSLLQESKEREFKLQ 145 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE 145 (790)
|+..|...+..++.+-..++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~ 687 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLE 687 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.12 E-value=0.87 Score=48.65 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhchh---HHHHHHHHHHh--hhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW--KRNPK---VLELERELEAK--KIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy--KEQE~---I~ELq~qL~~k--~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
..|++.++.-+..++.+-..|+.+.... .-|+. +..++..|... ..|...|...+..++.+...|..++++..
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444444 11111 33444444321 12777777777777777777777776655
Q ss_pred HHHHHHh---hh-----hhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 197 VILERKN---DN-----KNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 197 ~~~~q~e---e~-----~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
...+.-+ +. ..-+.++...-..++.+|.+++..-..+..+..+|+-+|+
T Consensus 117 ~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 117 EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4433200 00 0000111223344555555555555555555555555444
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.00 E-value=1.6 Score=51.37 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=69.6
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHhh-----hhchh--------HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 124 FLELDSLRSL-------LQESKEREFKLQAELSEW-----KRNPK--------VLELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 124 ~~EI~~LR~~-------V~eLqeRE~kLE~eLlEy-----KEQE~--------I~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
..||..|... |+.|+..-.+|+.+|-.+ ++-.. +..+.+-|...+.+.-.|...|..|+.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788888765 577888888888777766 33222 333334444444455555555555555
Q ss_pred HhhhHHHHHHHHHHHHHHHhh------hhhh--hccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 184 EKTSLSEQLAALSVILERKND------NKNA--INMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 184 E~~rLq~qv~e~~~~~~q~ee------~~~~--~~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
|...|...+.+..+.+...++ .... +.++ .-.++.||.|+..|++.|.+|..+.......|++.-
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 555444444433222221111 1111 1111 256777888888888888888877777777776543
No 44
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.98 E-value=0.035 Score=63.65 Aligned_cols=14 Identities=29% Similarity=0.185 Sum_probs=7.6
Q ss_pred HhhcCCcccccccc
Q 003863 361 KFKKWPIASEEMSN 374 (790)
Q Consensus 361 KLKkW~~~ked~~~ 374 (790)
++|+=..++.|.++
T Consensus 225 ~~kksk~tk~disa 238 (569)
T KOG3671|consen 225 YDKKSKITKADISA 238 (569)
T ss_pred cccccccccccCCC
Confidence 45554566666443
No 45
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.92 E-value=2.5 Score=46.34 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELS 149 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLl 149 (790)
++..++..|+..+..|+.+...|+.++.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777766666655443
No 46
>PRK02224 chromosome segregation protein; Provisional
Probab=94.87 E-value=2.1 Score=52.28 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=7.3
Q ss_pred CCCchhhhHHHH
Q 003863 767 GGFDAETMHAFE 778 (790)
Q Consensus 767 GG~D~~t~~afe 778 (790)
+|+|......|.
T Consensus 822 ~~lD~~~~~~~~ 833 (880)
T PRK02224 822 VFLDSGHVSQLV 833 (880)
T ss_pred ccCCHHHHHHHH
Confidence 677777554443
No 47
>PRK11637 AmiB activator; Provisional
Probab=94.87 E-value=4.3 Score=45.98 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=66.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K---RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-K---EQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
..+..+|..+...+..++.+...++.+|..+ + ..+. |.+++.+|.....+|..+..+|..++.+...+++.+...
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999888 3 3333 999999999999999999999999999999988888766
Q ss_pred HHHHH
Q 003863 196 SVILE 200 (790)
Q Consensus 196 ~~~~~ 200 (790)
....-
T Consensus 130 lra~Y 134 (428)
T PRK11637 130 LDAAF 134 (428)
T ss_pred HHHHH
Confidence 54433
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.77 E-value=1.5 Score=58.15 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=18.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.++.++..++..|.+..++||-+..+|...|+.-.
T Consensus 1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555443
No 49
>PRK03918 chromosome segregation protein; Provisional
Probab=94.67 E-value=3.5 Score=50.13 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=7.6
Q ss_pred CCCCchhhhHHHH
Q 003863 766 AGGFDAETMHAFE 778 (790)
Q Consensus 766 AGG~D~~t~~afe 778 (790)
.||+|....+.+-
T Consensus 822 ~~~lD~~~~~~l~ 834 (880)
T PRK03918 822 TPFLDEERRRKLV 834 (880)
T ss_pred CcccCHHHHHHHH
Confidence 3777777544443
No 50
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.57 E-value=0.024 Score=69.68 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=17.6
Q ss_pred hhhccchhhhhhhc-CCCcchhHHHHHHHhhhhh
Q 003863 615 LGFLVDERAVLKHF-DWPEKKADTLREAAFGYRD 647 (790)
Q Consensus 615 L~~L~DEraVL~~F-~~Pe~K~dalReAa~ly~~ 647 (790)
|..| -.+||+-+ +.|. -|+-.++.-++|+-
T Consensus 115 lkyl--PhavlkLLeNmP~-pWe~~~evkvlyh~ 145 (2365)
T COG5178 115 LKYL--PHAVLKLLENMPS-PWEDVSEVKVLYHC 145 (2365)
T ss_pred hhhc--hHHHHHHHhcCCC-hHhhhheeeEEeec
Confidence 4444 45677777 5663 45556666666654
No 51
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.55 E-value=1.5 Score=48.69 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------------KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
...|-+.++.+++.|++|-..|.....++ +++.. +.+...+..--..|++.|.+++.-++-
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999998766544 13333 566667777777799999999999999
Q ss_pred HhhhHHHHHHHHH
Q 003863 184 EKTSLSEQLAALS 196 (790)
Q Consensus 184 E~~rLq~qv~e~~ 196 (790)
+++-|.++++.+-
T Consensus 101 D~KlLR~~la~~r 113 (319)
T PF09789_consen 101 DIKLLREKLARQR 113 (319)
T ss_pred hHHHHHHHHHhhh
Confidence 9999998888764
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.43 E-value=1.9 Score=41.53 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=27.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
..-..|+.|+.++.+...+|..||.=|--+|+.
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445788999999999999999999988887764
No 53
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.41 E-value=1.7 Score=48.08 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh--
Q 003863 128 DSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN-- 205 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~-- 205 (790)
+.|+..|.+|+..-..| ..+++.++.+...|+++++.|.+.-+......+|+||.
T Consensus 23 ~~l~~~~~sL~qen~~L-----------------------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is 79 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVL-----------------------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS 79 (310)
T ss_pred HHHHHHHHHHHHHhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777655444 44667777888888888888888777777777777764
Q ss_pred ---hhhhccc--------ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 206 ---KNAINMG--------SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 206 ---~~~~~e~--------e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
+|+-..+ ....++=|.-...|-|....|+.|+.+|...|..-+
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2221111 133344455677889999999999999999998755
No 54
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.39 E-value=2.7 Score=49.65 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
|.+|+.+|.....+...|..+...+...++.|..+.
T Consensus 173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQLKQQQKELTESSEELKEER 208 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665555555555444333
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.35 E-value=1.7 Score=53.57 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=23.8
Q ss_pred hhhhhcccccchHhHHHHHHHHH---HHHHHHHHHHhhh
Q 003863 205 NKNAINMGSSSSQNLEMEVVELR---RLNKELQMEKRNL 240 (790)
Q Consensus 205 ~~~~~~e~e~~~~~LE~Ev~ELR---r~NkeLQ~EkreL 240 (790)
...+..++|.+|+.||.+|.+|. ..|.+|++-++++
T Consensus 453 LtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~el 491 (1243)
T KOG0971|consen 453 LTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNREL 491 (1243)
T ss_pred HHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777899999998886654 4455666555543
No 56
>PRK09752 adhesin; Provisional
Probab=94.17 E-value=0.043 Score=68.37 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=5.0
Q ss_pred hhHHhhhhh
Q 003863 750 YMLLQGVRF 758 (790)
Q Consensus 750 ~lL~qgvrF 758 (790)
.++||+|++
T Consensus 1132 QLiwq~V~~ 1140 (1250)
T PRK09752 1132 QVIYQGVQQ 1140 (1250)
T ss_pred EEEEEEccc
Confidence 455665554
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.09 E-value=2.2 Score=44.40 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHH
Q 003863 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEK 237 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ek 237 (790)
.+|+..-+.-+.|...|++.|..++..+.+|.+.+..+..-..=-+.++ +.-+.|+.|+.+||-..+.|+.++
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal-------~~aK~l~eEledLk~~~~~lEE~~ 83 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL-------QKAKALEEELEDLKTLAKSLEEEN 83 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333444455555555555555555554443322111001111 112334445555555555555555
Q ss_pred hhhhhhhhhhh
Q 003863 238 RNLACKFSSME 248 (790)
Q Consensus 238 reL~~KLd~ae 248 (790)
+-|..+...+|
T Consensus 84 ~~L~aq~rqlE 94 (193)
T PF14662_consen 84 RSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 58
>PHA01732 proline-rich protein
Probab=94.07 E-value=0.078 Score=48.52 Aligned_cols=6 Identities=50% Similarity=0.899 Sum_probs=2.4
Q ss_pred chhHHH
Q 003863 524 APQVVE 529 (790)
Q Consensus 524 sPevve 529 (790)
+|.+.+
T Consensus 44 apki~~ 49 (94)
T PHA01732 44 APKIRE 49 (94)
T ss_pred hhHHHH
Confidence 344433
No 59
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.02 E-value=3.4 Score=45.68 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhh--cc---cccchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAI--NM---GSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q---~ee~~~~~--~e---~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
++.|..++..||.||..|..++..+..-..+ +++.+..| .. ....+..|..|++.-..-|.+.|.|...|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999998887644332 22222222 11 1255666666666666666666666666655
Q ss_pred hhhhhhhhh
Q 003863 243 KFSSMENQL 251 (790)
Q Consensus 243 KLd~ae~~~ 251 (790)
++-..|.++
T Consensus 242 qivdlQ~r~ 250 (306)
T PF04849_consen 242 QIVDLQQRC 250 (306)
T ss_pred HHHHHHHHH
Confidence 555444433
No 60
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.98 E-value=6.4 Score=48.70 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=62.7
Q ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 212 ~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
.+....+|..-+.++.|.-.++.---.+....|++.+..+..+. +| ++.++.....+.+..-....|++-....|
T Consensus 464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~--~e---~~~lq~~~~~~~qs~~~~~~~l~~~l~~K 538 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLL--IE---LEELQRTLSNLAQSHNNQLAQLEDLLKQK 538 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HH---HHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666666666666666666666665544331 22 34555666666666667888899888889
Q ss_pred hchHHHHHHHHHhhHHHhhhhhhc
Q 003863 292 LNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 292 ~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
...+.+++..+-.-+.+|.|+.+-
T Consensus 539 D~~~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 539 DRLAAELVAREEEREALRLEAERS 562 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 989999997442222366666443
No 61
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=93.87 E-value=0.11 Score=58.83 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 168 KIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 168 ~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
..++..+.-++++||+..-||.-.|.++.
T Consensus 56 f~da~~f~~R~NSLQ~RIDRL~vkVtqLD 84 (518)
T KOG1830|consen 56 FNDANNFNHRANSLQERIDRLAVKVTQLD 84 (518)
T ss_pred HHHhhhhhhhhhHHHHHHHHHhhhhhccC
Confidence 44566666677777777777666655553
No 62
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.80 E-value=0.35 Score=49.27 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
++|+.++.|+.+.|..|+.|.--|-..+
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.78 E-value=3.5 Score=51.74 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
|-+-++||.....++.....++..|+.+.+..+..+.++
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~ 314 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEA 314 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555566666666666666655555444443
No 64
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.49 E-value=7.5 Score=48.76 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=72.8
Q ss_pred CCCcccc----ccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhchh-HHHHHHHHHHhhhhHHHHHHH
Q 003863 106 HPNSYQT----HRRQSSGSRDLFLELDSLRSLLQESKEREFKLQA---ELSEWKRNPK-VLELERELEAKKIENDEIVRR 177 (790)
Q Consensus 106 ~~~~~~~----~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~---eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~k 177 (790)
.+|.|+. ...+.+..++.-.+|..|.....+|+.....|+. +|...+-|.. -..|+.||.++.-++.++...
T Consensus 651 ~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r 730 (1174)
T KOG0933|consen 651 EGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKR 730 (1174)
T ss_pred cCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567762 2234455566778888888887777766665553 4444333333 889999999999888887766
Q ss_pred Hh------------hhHHHhhhHHHHHHHHHHHHHHHhhh-hhhhc-------ccccchHhHHHHHHHHHHH
Q 003863 178 VG------------MLEDEKTSLSEQLAALSVILERKNDN-KNAIN-------MGSSSSQNLEMEVVELRRL 229 (790)
Q Consensus 178 I~------------sLeaE~~rLq~qv~e~~~~~~q~ee~-~~~~~-------e~e~~~~~LE~Ev~ELRr~ 229 (790)
+. .+.++-+.++.++.+...+.++.++. ..++. +-+.++++|+.|+..+.+.
T Consensus 731 ~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~ 802 (1174)
T KOG0933|consen 731 LEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR 802 (1174)
T ss_pred HhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH
Confidence 53 34444445555555555555543332 12221 1246666666666555443
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.35 E-value=5.1 Score=42.16 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 278 EDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 278 E~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
+.+...+..|+..-...-++|..-+--..|++.||+..
T Consensus 193 e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544555553344445566777654
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.32 E-value=5.5 Score=52.66 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHH----HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVL----ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI 198 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~----ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~ 198 (790)
..|+..|+..+..+.....+|..++... .+++.+. |++.+=......+..++.+|+.|+.++..|.++++..-..
T Consensus 79 ~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~ 158 (1822)
T KOG4674|consen 79 RNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKT 158 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777 4444422 3443333333445555556666666666666666544322
Q ss_pred HH------------------------HHhhh---------------------hhhh-----cccccchHhHHHHHHHHHH
Q 003863 199 LE------------------------RKNDN---------------------KNAI-----NMGSSSSQNLEMEVVELRR 228 (790)
Q Consensus 199 ~~------------------------q~ee~---------------------~~~~-----~e~e~~~~~LE~Ev~ELRr 228 (790)
.. |+.++ ..++ .+++..|.++..+..+|+.
T Consensus 159 ~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~ 238 (1822)
T KOG4674|consen 159 LSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQE 238 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11111 1111 1234788889999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHH
Q 003863 229 LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALV 272 (790)
Q Consensus 229 ~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~ 272 (790)
.|+-|-.++.+|..++..--..+..+.. +.+..+.+..+|+..
T Consensus 239 ~~~~l~q~~~eLs~~ie~~~~~ls~~k~-t~~s~~~kf~~El~~ 281 (1822)
T KOG4674|consen 239 KNKSLKQQNEELSKKIESLNLELSKLKD-TAESSEEKFEKELST 281 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 9999999999999988877766666544 333345566666653
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=4.9 Score=50.96 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=45.5
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..+.+||-++..++...+.|..+...+..+..--+..+.. ++. -+..|++++..++..=+.+.+.+..|..+|-+
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e----~~~-~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId 1016 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKE----AEE-SLKEIKKELRDLKSELENIKKSENELKAERID 1016 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555555555555555555555554444443333322 222 33467888888888888888888888887776
No 68
>PRK09039 hypothetical protein; Validated
Probab=93.07 E-value=1.4 Score=48.95 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
|.+|+.++.....+-..|......+......++.++..+..-...++.. =.+....+.-|-.+|..||+.+..||.+
T Consensus 83 l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~---~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 83 VANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQV---SARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666655555444555555555543211111000 0011244555666666666666666655
Q ss_pred Hhhhhhhhhhhhhhh
Q 003863 237 KRNLACKFSSMENQL 251 (790)
Q Consensus 237 kreL~~KLd~ae~~~ 251 (790)
...+..+...++.++
T Consensus 160 L~~ae~~~~~~~~~i 174 (343)
T PRK09039 160 LDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 69
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=93.05 E-value=0.17 Score=58.43 Aligned_cols=11 Identities=55% Similarity=1.102 Sum_probs=5.1
Q ss_pred ccCCCCCCCCC
Q 003863 468 VLRVPNPPPRP 478 (790)
Q Consensus 468 a~rvP~PPP~p 478 (790)
+.|.|+|||++
T Consensus 372 ~ar~PPPpp~s 382 (569)
T KOG3671|consen 372 AARPPPPPPRS 382 (569)
T ss_pred CCCCCcCCCCC
Confidence 34444555444
No 70
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.97 E-value=14 Score=44.40 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.+|++.|+..|..|..+-..++.++..+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l 354 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKML 354 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887777777777777666
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.70 E-value=4.6 Score=39.85 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=33.4
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~ 253 (790)
..+++..++.+.++.|..+.|+.+...+-.|++..+.++..
T Consensus 100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 100 TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 47788888888888899899988888888888887766643
No 72
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.64 E-value=6.7 Score=50.27 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=45.1
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
|..+...+..+|..+...+..++.+...+|.+|..+ +..+.+++.++.....++.-....+..|+.+...++.++.
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI--NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444445778888889999999988888888888766 1113444444444444444444444444444444444443
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=6.3 Score=48.21 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=46.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-------hhcccC-h-hhHHHHHHHHHHHHhhhchhHHHHH
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT-------SLAKAS-E-SDIISKIKAEALVLRHTNEDLSKQV 284 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~-------~~~~~~-E-s~~va~~~eE~~~Lr~~NE~L~~Ql 284 (790)
..+..|-.++.|+...|-.|--|+.+|--+|.+.++..- .|.... + ..+.-.|++..+.|-.+.+.-..++
T Consensus 486 sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ei 565 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEI 565 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666777777777777788888888876654211 110000 0 1134455566666666666666666
Q ss_pred HHHhhhhhchH
Q 003863 285 EGLQMSRLNEV 295 (790)
Q Consensus 285 E~f~~dR~~dv 295 (790)
++|+......-
T Consensus 566 di~n~qlkelk 576 (1118)
T KOG1029|consen 566 DIFNNQLKELK 576 (1118)
T ss_pred hhHHHHHHHHH
Confidence 66665554333
No 74
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=7.9 Score=49.20 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=17.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
+....+-.|+..++.....+-.+..+..-+++.||+.+
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel 509 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL 509 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444455555554443
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.31 E-value=11 Score=45.50 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=37.1
Q ss_pred cchHhHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 214 SSSQNLEMEVVELRRLNKEL-------QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeL-------Q~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
+.+.+|+.-++.|-..|.+| |+-+++|..||...+..+..+. +.|+--.+|+..|.+.++.+..||..
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~-----e~le~K~qE~~~Lq~q~dq~~~~Lqq 241 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK-----EKLELKSQEAQSLQEQRDQYLGHLQQ 241 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444222 3344566666665554443331 12322236788888888887777774
Q ss_pred H
Q 003863 287 L 287 (790)
Q Consensus 287 f 287 (790)
.
T Consensus 242 y 242 (617)
T PF15070_consen 242 Y 242 (617)
T ss_pred H
Confidence 4
No 76
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.28 E-value=2.5 Score=44.32 Aligned_cols=72 Identities=29% Similarity=0.336 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
..||-.||..++++...-...+.++..+ ..... +...+++|....+|+..|..+|..|+.|...|++.++..
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5789999999998888888888888877 22222 677789999999999999999999999999999999876
No 77
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.26 E-value=5.6 Score=41.71 Aligned_cols=83 Identities=25% Similarity=0.292 Sum_probs=62.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----hchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K-----RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-K-----EQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
.|...-|..++..+..+++....|+.++.+. . ....+.+++.++.....++..|...|..+..+.+..++.+.+
T Consensus 16 ~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 16 NCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568999999999999999999888887 3 233377888888888888888888888888887777777776
Q ss_pred HHHHHHHHh
Q 003863 195 LSVILERKN 203 (790)
Q Consensus 195 ~~~~~~q~e 203 (790)
.-....+..
T Consensus 96 ~~~~l~~~~ 104 (302)
T PF10186_consen 96 LRESLEQRR 104 (302)
T ss_pred HHHHHHHHH
Confidence 655555433
No 78
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.22 E-value=7 Score=49.28 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=37.3
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEK-RNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~Ek-reL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
+..++++-.++..|++....++.+- .++..+++..+..+..|.. -|+++++....||.+-.++...+...+..+
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~-----evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK-----EVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3556666666666666666666655 5566666666555544422 133444444444443334444443333333
No 79
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.91 E-value=12 Score=44.86 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh------ccc---ccchHhHHHHHHHHHHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI------NMG---SSSSQNLEMEVVELRRL 229 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~------~e~---e~~~~~LE~Ev~ELRr~ 229 (790)
.|+.+...-+.++..+..+|.+|+.-...-+.++-+.-.-..+ +-+.+.+ .++ ++++..||-|+..||-.
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de-e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE-EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445567777777777777666666655444332111 1112221 112 48899999999988864
Q ss_pred H
Q 003863 230 N 230 (790)
Q Consensus 230 N 230 (790)
.
T Consensus 265 l 265 (629)
T KOG0963|consen 265 L 265 (629)
T ss_pred H
Confidence 3
No 80
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.87 E-value=8.4 Score=48.33 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH----HHhh
Q 003863 268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL----RWVN 305 (790)
Q Consensus 268 eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L----R~~N 305 (790)
.|.......-..|..++..+..+..+-..++-.+ -|++
T Consensus 899 ~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 899 SEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 3333444444455566666666655544444322 5666
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=14 Score=45.38 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
+|+.+...+..+-+|...|+.++.|+.
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 82
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=91.40 E-value=4.3 Score=42.45 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK---VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~---I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~ 199 (790)
...=|+.....++-+..|-.+|++ |..|...-- ...|+..+..-..++..++.+|..+..+.+..|.++..-....
T Consensus 102 w~~al~na~a~lehq~~R~~NLeL-l~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~L 180 (221)
T PF05700_consen 102 WKEALDNAYAQLEHQRLRLENLEL-LSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYL 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345577777788888888888875 455533322 6677777777777888888888888888888888777665554
Q ss_pred HHH-hhhhhhhcccccchHhHHHHHHHHHHHHHHHHH
Q 003863 200 ERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235 (790)
Q Consensus 200 ~q~-ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~ 235 (790)
+++ .+...+-.+++.....||.||.+||+.-.+++.
T Consensus 181 e~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 181 EQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 444444455566666666666666666555543
No 83
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=91.26 E-value=17 Score=42.36 Aligned_cols=76 Identities=26% Similarity=0.300 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv 299 (790)
|..=||..|+.||.|.++-+.-..+|=-.+-.|....|+..+| ++-+....++|+.+-+|++.|....+.++.-+-
T Consensus 404 Er~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a--~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~k 479 (488)
T PF06548_consen 404 ERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVA--QERAMDAEQENEKAKKQIEKLKRKHKMEISTMK 479 (488)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555999999999875555444444444443333333343 667777789999999999999988887666554
No 84
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.24 E-value=13 Score=45.08 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKN 207 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~ 207 (790)
|+.|..+.+....=+..+..+|..|++|.++|..-+.....+.++++|+.+
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666655555444447777788899999999988877777777776665533
No 85
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.23 E-value=7.3 Score=45.77 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW---------KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy---------KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
.-+++|+..+..++++-..|..+-+.| +||-.+..+.++|.--++++..+...|.++-.|+.+++++...+
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999988888888777766 44444556666666656555555555555544444444444433
No 86
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=91.07 E-value=0.14 Score=58.99 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=17.4
Q ss_pred cCCCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 003863 469 LRVPNPPPRPSCGISGGTKEERQAQIPQPPPL 500 (790)
Q Consensus 469 ~rvP~PPP~ps~~~~~~~~~~~~~~vPpPpp~ 500 (790)
+.+|+|||+|+.. | .++--..|+|||||-
T Consensus 227 ~~~P~~P~~P~~~-P--~~~~L~~GvPPPPP~ 255 (817)
T KOG1925|consen 227 PKEPLIPASPKEL-P--TRDFLLSGVPPPPPK 255 (817)
T ss_pred CCCCCCCCChhcc-C--CchhhhcCCCCCCCC
Confidence 3456666666553 2 334567788887765
No 87
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=2.4 Score=47.36 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=14.6
Q ss_pred cchHHHHHHHHhHHHHhhhccchhhhhh
Q 003863 599 QNIEDVVAFVKWLDDELGFLVDERAVLK 626 (790)
Q Consensus 599 ~dm~dlv~Fv~wlD~eL~~L~DEraVL~ 626 (790)
.+...|++-..-|++++.+|--..-||+
T Consensus 246 ~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 246 IGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344555555566666666544444443
No 88
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.84 E-value=5.7 Score=42.60 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=41.1
Q ss_pred HHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 163 ELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 163 qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
+|+.-+..+--+--+|..||.+|..|+.++..+...... .+...-...+.|+.+||+....+..++..+..
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~---------~~~~~~~~ye~el~~lr~~id~~~~eka~l~~ 75 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGE---------EVSRIKEMYEEELRELRRQIDDLSKEKARLEL 75 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---------cCcccccchhhHHHHhHHhhhhHHHHhhHHhh
Confidence 344445666667778889999999999888876544321 11112233445555555555555555544444
Q ss_pred hhhhhhh
Q 003863 243 KFSSMEN 249 (790)
Q Consensus 243 KLd~ae~ 249 (790)
.++.+..
T Consensus 76 e~~~l~~ 82 (312)
T PF00038_consen 76 EIDNLKE 82 (312)
T ss_dssp HHHHHHH
T ss_pred hhhhHHH
Confidence 4444443
No 89
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=90.82 E-value=0.27 Score=55.88 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=6.5
Q ss_pred chhHHHHHHh
Q 003863 524 APQVVEFYHS 533 (790)
Q Consensus 524 sPevvelYrs 533 (790)
.+.+.++|.+
T Consensus 370 ~~pl~~~~p~ 379 (518)
T KOG1830|consen 370 NPPLCNPFPS 379 (518)
T ss_pred CCCCCCCCcc
Confidence 4667777773
No 90
>PRK09039 hypothetical protein; Validated
Probab=90.73 E-value=21 Score=39.90 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~ 249 (790)
++..|..++..+++++.+|+.+.+....... ++..+-...+..+..+..+..|.++....|+.|...|..+|...|+
T Consensus 82 ~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~---~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 82 SVANLRASLSAAEAERSRLQALLAELAGAGA---AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666553211000 0001111123667777777777788888888888888888777776
Q ss_pred hhhh
Q 003863 250 QLTS 253 (790)
Q Consensus 250 ~~~~ 253 (790)
.+..
T Consensus 159 ~L~~ 162 (343)
T PRK09039 159 ALDA 162 (343)
T ss_pred HHHH
Confidence 6644
No 91
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.73 E-value=11 Score=45.30 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQ---AELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE---~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq 189 (790)
.+..|+.+|+.-+..|.++=...- ..|..+ .+|+. |.||++.|.....+.....+.+..|++++....
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~S 156 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATAS 156 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 356677777777777765433221 233333 78888 999998888766655444445555554444333
No 92
>PRK01156 chromosome segregation protein; Provisional
Probab=90.65 E-value=21 Score=44.03 Aligned_cols=32 Identities=6% Similarity=0.043 Sum_probs=23.4
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
...+..+|..|...+++|..+...|..++.++
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~ 502 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887777777666655
No 93
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=90.58 E-value=0.28 Score=52.57 Aligned_cols=6 Identities=0% Similarity=0.523 Sum_probs=2.6
Q ss_pred hhHhhh
Q 003863 561 MIGEIE 566 (790)
Q Consensus 561 mi~Ei~ 566 (790)
+|.+|.
T Consensus 243 VLKDmn 248 (253)
T PF05308_consen 243 VLKDMN 248 (253)
T ss_pred HHHhhh
Confidence 344443
No 94
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.57 E-value=0.36 Score=54.58 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=5.4
Q ss_pred cCCCCCCCCCC
Q 003863 469 LRVPNPPPRPS 479 (790)
Q Consensus 469 ~rvP~PPP~ps 479 (790)
+..|+=||++-
T Consensus 482 ls~PPlPPr~d 492 (563)
T KOG1785|consen 482 LSLPPLPPRLD 492 (563)
T ss_pred CCCCCCCCCcc
Confidence 33455555544
No 95
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.40 E-value=10 Score=47.78 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=65.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHh-------hhHHHhh
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAE------LSEWKRNPK-VLELERELEAKKIENDEIVRRVG-------MLEDEKT 186 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~e------LlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~-------sLeaE~~ 186 (790)
-||..||++|++-|....++.=-.-.| -.|++++.. |.+|+.+|.....++..|..... -|..+..
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467899999999997766543222111 111112222 44444444443333333333333 2222222
Q ss_pred hHH----HHHHHHHHHHHHHh---hhhhhhccc----ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 187 SLS----EQLAALSVILERKN---DNKNAINMG----SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 187 rLq----~qv~e~~~~~~q~e---e~~~~~~e~----e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.++ +...++..+.+.-+ ..++.++++ ++....+..-+.+||+.+.+-|.....|..||+...
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 222 22222223222111 112223333 244445555588999999999999999999999775
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.37 E-value=33 Score=38.06 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW--K--RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy--K--EQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
..+..|+..+.++.++...|..++..| + +.-. ++||-.+...-..+-+.++.+|.-|.++...+-+.+.+
T Consensus 13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888899999999999999999 2 1222 88888888888888888999998888887665444443
No 97
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.36 E-value=26 Score=36.89 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=17.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhhhhchHHHH
Q 003863 267 KAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL 298 (790)
Q Consensus 267 ~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEEL 298 (790)
...+..|-...+.|...|......+..--.||
T Consensus 196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666665555554444444
No 98
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=90.32 E-value=0.24 Score=56.39 Aligned_cols=6 Identities=33% Similarity=0.152 Sum_probs=2.4
Q ss_pred HHHhhh
Q 003863 577 ADVATQ 582 (790)
Q Consensus 577 ~dv~~~ 582 (790)
+-|+.|
T Consensus 334 W~VEnq 339 (480)
T KOG2675|consen 334 WRVENQ 339 (480)
T ss_pred EEEeee
Confidence 334443
No 99
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.23 E-value=25 Score=41.19 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 264 SKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 264 a~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
..+++|.+.++++...|..||+++..+-
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777775444433
No 100
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.16 E-value=32 Score=44.36 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH-HHH--------HhhhhhhhcccccchHhHHHHHH-HHHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI-LER--------KNDNKNAINMGSSSSQNLEMEVV-ELRR 228 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~-~~q--------~ee~~~~~~e~e~~~~~LE~Ev~-ELRr 228 (790)
++++++.....+++.|..++..++++-..+...+.....- ... .++..++....+..+..|+.+.. ++..
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~ 435 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQE 435 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554444322211 110 01111111112244455555544 3444
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh
Q 003863 229 LNKELQMEKRNLACKFSSMENQLT 252 (790)
Q Consensus 229 ~NkeLQ~EkreL~~KLd~ae~~~~ 252 (790)
...+++.+...+...+...+.++.
T Consensus 436 ~~~~~~~~~~~~~~~l~~l~~~~~ 459 (1201)
T PF12128_consen 436 QLEELQEQREQLKSELAELKQQLK 459 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555544443
No 101
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.07 E-value=20 Score=42.69 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE 184 (790)
..||+..+.....|++.++..+.-.+..
T Consensus 52 ~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 52 LEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555666666555444433
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.01 E-value=12 Score=49.28 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhcCCCcccccchhhHHHH
Q 003863 670 LKKMVSLSEKMERTVYALLRTRETLMRNCREFQIPTAWMLDDGIISKI 717 (790)
Q Consensus 670 l~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~~Ip~~wmlD~gii~ki 717 (790)
+.+..+.+-.++..+..+..+-.+....+.++|||.+. |.--+.
T Consensus 1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~----~~~~~~ 1058 (1486)
T PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS----GAEERA 1058 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc----cHHHHH
Confidence 33444444455566677888888889999999999865 665544
No 103
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=89.95 E-value=0.092 Score=57.67 Aligned_cols=6 Identities=50% Similarity=0.694 Sum_probs=2.5
Q ss_pred hhhhhh
Q 003863 446 PQFSAN 451 (790)
Q Consensus 446 ~~~~~~ 451 (790)
+++|+|
T Consensus 163 A~Fy~N 168 (312)
T PF01213_consen 163 AQFYTN 168 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 344444
No 104
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.71 E-value=27 Score=38.92 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=31.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE 285 (790)
..+..|+.+...++....+|..||=+|--.|++-| ..+|-++-..++.|-.++..|..+|+
T Consensus 142 k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ-----------E~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 142 KKIERLEKEKSAKQEELERLRREKVDLENTLEQEQ-----------EALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555555555555556555555555443 22444444455555544444544444
No 105
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.70 E-value=15 Score=45.07 Aligned_cols=115 Identities=25% Similarity=0.250 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHH-------HhhhHHHhhhHHHHHHHHHHH
Q 003863 127 LDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRR-------VGMLEDEKTSLSEQLAALSVI 198 (790)
Q Consensus 127 I~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~k-------I~sLeaE~~rLq~qv~e~~~~ 198 (790)
|.+=..++++.--||..|..++.++ +. ++.++..+.--.+|.+-|... +..|+.+..+|.+++.+|- .
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l---~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K-~ 90 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILEL---ENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK-F 90 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344567777778888887777765 33 444555555555555555444 4555555555555555542 1
Q ss_pred HHH--Hhhhhhhhc-cc--c---cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 199 LER--KNDNKNAIN-MG--S---SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 199 ~~q--~ee~~~~~~-e~--e---~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
+++ -++....++ +| + ..++.=-+|...|+-.+++|++|..-|--+|+
T Consensus 91 rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 91 REARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111111 12 1 33444455666666666666665555444443
No 106
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.61 E-value=8.7 Score=39.51 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=95.7
Q ss_pred CCCCCccc----cccccCCCCcChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchh---HHHHHHHHHHhhhhHHHHH
Q 003863 104 QVHPNSYQ----THRRQSSGSRDLFLELDSLRSLL-QESKEREFKLQAELSEWKRNPK---VLELERELEAKKIENDEIV 175 (790)
Q Consensus 104 ~~~~~~~~----~~~~~~~~~~~~~~EI~~LR~~V-~eLqeRE~kLE~eLlEyKEQE~---I~ELq~qL~~k~~Ei~~L~ 175 (790)
=+||-.|. .-..+.+..+.-..++..|...+ ..|+.+..+- .-+-..++.=. ..||=||+.+.=.|=..|-
T Consensus 8 i~ppr~~~~~~~~~~q~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~-~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL 86 (189)
T PF10211_consen 8 ILPPREWEEDGQLWIQFVSSAPATRQDVIQLQEWLDKMLQQRQARE-TGICPVREELYSQCFDELIRQVTIDCPERGLLL 86 (189)
T ss_pred hCCchhhhcCCeeeEeeeCCCCCCHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHH
Confidence 35666663 21224455556677888888777 3344332211 11100022111 5677777777666555554
Q ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHH-hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003863 176 RRVGMLEDEKTSLSEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (790)
Q Consensus 176 ~kI~sLeaE~~rLq~qv~e~~~~~~q~-ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~ 254 (790)
.+|-. +++.-+..|..+.+.. .-+++.--+.++...+|+.++.+|...+.+|+.+..+|..+++.++......
T Consensus 87 ~rvrd------e~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 87 LRVRD------EYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44411 1122222222222210 0011111112344578888999999999999999999999999888766443
Q ss_pred cccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 255 AKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 255 ~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
.. . ...+..+|++.|+..|..|..||+.
T Consensus 161 ~~-~---~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 161 RQ-E---EEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HH-H---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 1 1235578999999999998888874
No 107
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.37 E-value=30 Score=38.47 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=94.2
Q ss_pred ccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-H----------HHHHHHHHHhhh-------------
Q 003863 115 RQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-V----------LELERELEAKKI------------- 169 (790)
Q Consensus 115 ~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I----------~ELq~qL~~k~~------------- 169 (790)
.|+.....++.|-.+|.+-+..=++-..+||.++.-| -.+.+ | ++|+.-++....
T Consensus 60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~ 139 (305)
T PF14915_consen 60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDV 139 (305)
T ss_pred HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchH
Confidence 3666677888999999999988888888899998888 11111 2 233322221111
Q ss_pred -----hHHHHHHHHhhhHHHhhhHHHHHHHH-------HHHHH--H------Hhhhhhhhcc---cccchHhHHHHHHHH
Q 003863 170 -----ENDEIVRRVGMLEDEKTSLSEQLAAL-------SVILE--R------KNDNKNAINM---GSSSSQNLEMEVVEL 226 (790)
Q Consensus 170 -----Ei~~L~~kI~sLeaE~~rLq~qv~e~-------~~~~~--q------~ee~~~~~~e---~e~~~~~LE~Ev~EL 226 (790)
...+|.++++.-|+.-+.|+.++-.. ..+.+ | +.+....+.. .+..+..--+.-.-|
T Consensus 140 S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~ 219 (305)
T PF14915_consen 140 SNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESL 219 (305)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 23566666655555555555544332 22222 1 0111111111 124455555566667
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhcc----cC--hhhHHHHHHHHHHH----HhhhchhHHHH
Q 003863 227 RRLNKELQMEKRNLACKFSSMENQLTSLAK----AS--ESDIISKIKAEALV----LRHTNEDLSKQ 283 (790)
Q Consensus 227 Rr~NkeLQ~EkreL~~KLd~ae~~~~~~~~----~~--Es~~va~~~eE~~~----Lr~~NE~L~~Q 283 (790)
.-....||-||.=|...|+.|..++..-.+ .- =.++|.++..|..+ |.+.|..|...
T Consensus 220 eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne 286 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINE 286 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777888888888888888888877644221 11 03455555555544 55555555443
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.36 E-value=1.9 Score=44.04 Aligned_cols=80 Identities=25% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
+.+|+..+.....+|..|...+..|+.+...|.+.+.+..+.... +..-+-.|-.+..-|...+..|+.|
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----------l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----------LQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555554444331 1234455667777788889999999
Q ss_pred Hhhhhhhhhh
Q 003863 237 KRNLACKFSS 246 (790)
Q Consensus 237 kreL~~KLd~ 246 (790)
|.+|..|+=.
T Consensus 174 n~~Lv~Rwm~ 183 (194)
T PF08614_consen 174 NRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.35 E-value=11 Score=46.58 Aligned_cols=165 Identities=20% Similarity=0.256 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhchhHHHHHHHHHHhhh-------hHHHHHHHHhhhH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW------------KRNPKVLELERELEAKKI-------ENDEIVRRVGMLE 182 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy------------KEQE~I~ELq~qL~~k~~-------Ei~~L~~kI~sLe 182 (790)
|+..=|+.|+..+...+.+.-.|+.++..+ |-+..+..++..+..-+. .++.-..+|+-|+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999998877554 222225555544443333 3344445555666
Q ss_pred HHhhhHHHHHHHHHHHHHH--------------------Hhhhhh-------h-----h-c--ccccchHhHHHHHHHHH
Q 003863 183 DEKTSLSEQLAALSVILER--------------------KNDNKN-------A-----I-N--MGSSSSQNLEMEVVELR 227 (790)
Q Consensus 183 aE~~rLq~qv~e~~~~~~q--------------------~ee~~~-------~-----~-~--e~e~~~~~LE~Ev~ELR 227 (790)
.....|++++.+-..-... -+++.. . + . +-...+..+..|+.+|+
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555443321111 011100 0 0 0 01145667777777888
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh--HHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 228 RLNKELQMEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 228 r~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~--~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
..+..||-+..+....|..+...++++...-+-. .+..+.=++...|+..++|..+++.
T Consensus 479 ~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 479 AKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888888777777776666654432211 1223333444444555555555554
No 110
>PHA03247 large tegument protein UL36; Provisional
Probab=89.11 E-value=0.65 Score=62.07 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 003863 671 KKMVSLSEKMERTVYALLRTRETLMRNCRE 700 (790)
Q Consensus 671 ~Km~~l~dKvErsv~~LeRtRd~a~~ryk~ 700 (790)
..|.-|++-|++.+.+|-+||.-.+.+-..
T Consensus 3109 salAlLi~ACr~i~r~lr~TR~~L~~~~~~ 3138 (3151)
T PHA03247 3109 SALAVLIEACRRIRRQLRRTRHALLDRSGA 3138 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 346678889999999999999877665443
No 111
>PHA03211 serine/threonine kinase US3; Provisional
Probab=89.06 E-value=0.39 Score=54.82 Aligned_cols=10 Identities=0% Similarity=0.126 Sum_probs=5.3
Q ss_pred cccccchhHH
Q 003863 519 GVVQRAPQVV 528 (790)
Q Consensus 519 ~kv~RsPevv 528 (790)
..+.+.-++.
T Consensus 66 ~~~~~~~~~~ 75 (461)
T PHA03211 66 ARLCQIQELL 75 (461)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 112
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.90 E-value=23 Score=42.03 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 270 ALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 270 ~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
|..+...-+.+..+++.+...+..-.+.+..+|-...-.|..+..+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555557777777777777777776666655554344444444
No 113
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.85 E-value=34 Score=37.88 Aligned_cols=145 Identities=23% Similarity=0.284 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchh------HHHHHHHHHHhhhhHHHHHH-------HHhhhHHHhhhHHHHHHH
Q 003863 128 DSLRSLLQESKEREFKLQAELSEWKRNPK------VLELERELEAKKIENDEIVR-------RVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~eLlEyKEQE~------I~ELq~qL~~k~~Ei~~L~~-------kI~sLeaE~~rLq~qv~e 194 (790)
+.|+..+...+.||..++..+- -++.|. +......+.........++. +|..|......|+.||.-
T Consensus 142 eKlK~l~eQye~rE~~~~~~~k-~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~ 220 (309)
T PF09728_consen 142 EKLKSLIEQYELREEHFEKLLK-QKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNL 220 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766665332 233333 33333444444456666666 899999999999999988
Q ss_pred HHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863 195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR 274 (790)
Q Consensus 195 ~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr 274 (790)
|.-=-.+=+..+..- ...-...-.|+..|...++.|+-|+..+..|.+.+...+. .+-+|...+.
T Consensus 221 Y~~Kf~efq~tL~kS---Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~------------~m~eer~~~~ 285 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKS---NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI------------EMAEERQKLE 285 (309)
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHH
Confidence 874433322222221 1344556678888999999999999999999998764431 2334555444
Q ss_pred hhchhHHHHHHHHh
Q 003863 275 HTNEDLSKQVEGLQ 288 (790)
Q Consensus 275 ~~NE~L~~QlE~f~ 288 (790)
...+.+..+++.|+
T Consensus 286 ~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 286 KELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555543
No 114
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.79 E-value=11 Score=42.13 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHH---hhhhhchHHHHH-HHHHhh
Q 003863 265 KIKAEALVLRHTNEDLSKQVEGL---QMSRLNEVEELA-YLRWVN 305 (790)
Q Consensus 265 ~~~eE~~~Lr~~NE~L~~QlE~f---~~dR~~dvEELv-~LR~~N 305 (790)
.+..|-+..|+.-..|..+|..+ ...|--|++.|+ ..||..
T Consensus 158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~ 202 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Confidence 34566677777777777777733 335667788888 334433
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.64 E-value=4.2 Score=44.85 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 224 VELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 224 ~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
.+.-+....++.+..++...+++.+.++
T Consensus 95 ~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 95 EEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554443
No 116
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.60 E-value=29 Score=40.26 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
-++..|..+|-.|+.|+.+|...++.+-.+..
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~d 328 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLAD 328 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889999999999999999988887765555
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.56 E-value=8 Score=42.58 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-H----HHHHHHHHHhhhhHHHHHHHHhhh----HHHhhhHHHHHHHHH
Q 003863 126 ELDSLRSLLQESKEREFKLQAELSEWKRNPK-V----LELERELEAKKIENDEIVRRVGML----EDEKTSLSEQLAALS 196 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I----~ELq~qL~~k~~Ei~~L~~kI~sL----eaE~~rLq~qv~e~~ 196 (790)
=...|..+...|++.-..|+.+...+.+... | -+|......-..++..|+.....+ +.+-+.+++++++..
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~ 222 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQK 222 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555522211 2 222222222222333333333222 233333333333332
Q ss_pred HHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhh
Q 003863 197 VILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHT 276 (790)
Q Consensus 197 ~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~ 276 (790)
.-.+. ..+.+.+|+.+..+++....++..++.++...+..++.........|..+ |..++++++.|-..
T Consensus 223 ~~i~~----------~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~E-v~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 223 EEIEA----------KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSE-VKRLKAKVDALEKL 291 (325)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHH
Confidence 22221 11233444444444444444444455555555555554444444556565 44788888888753
No 118
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.48 E-value=55 Score=40.09 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH------------Hhhhhhhhccc---ccchHhHHHH
Q 003863 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER------------KNDNKNAINMG---SSSSQNLEME 222 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q------------~ee~~~~~~e~---e~~~~~LE~E 222 (790)
..+|-.+.....+...+..+|..|+..+..|.+++.....-.++ ++.+...+.++ ++.++-||.+
T Consensus 516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk 595 (786)
T PF05483_consen 516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENK 595 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444556666667788888888887666532221111 11122222222 2445555555
Q ss_pred HHHHHH-------HHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863 223 VVELRR-------LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR 274 (790)
Q Consensus 223 v~ELRr-------~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr 274 (790)
+-.||+ ...+||.+|.-|..++-+--.+++.+ | --|.+++.|+..+.
T Consensus 596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~----e-ikVn~L~~E~e~~k 649 (786)
T PF05483_consen 596 CNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY----E-IKVNKLQEELENLK 649 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHH
Confidence 555554 66789999998888875433444332 1 13556777777665
No 119
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.45 E-value=0.14 Score=61.49 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhh
Q 003863 268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN 305 (790)
Q Consensus 268 eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~N 305 (790)
.+++.|..++..|...++.+...++....|.-.||+.+
T Consensus 384 ~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 384 RRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666665555555555444
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.42 E-value=12 Score=38.85 Aligned_cols=73 Identities=26% Similarity=0.340 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhh-hhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKK-IENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~----I~ELq~qL~~k~-~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
+..||..||..++.+++.+..++..+.+. .+... +.-|+.-...++ .|.+.|..+++.++.+-..-...+..+
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888777655 22211 333333322222 256666666666665544444444433
No 121
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.31 E-value=11 Score=44.89 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 157 VLELERELEAKKI-ENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 157 I~ELq~qL~~k~~-Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
..++..+|+..-. ....+.-+|+.|++.+.+|.+++.+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e 253 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINE 253 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556555443 3344677888888888888888873
No 122
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.28 E-value=17 Score=39.60 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH------HHHH-HHhhhhh
Q 003863 135 QESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS------VILE-RKNDNKN 207 (790)
Q Consensus 135 ~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~------~~~~-q~ee~~~ 207 (790)
-+++.+=..++.||-|+.|- -+|++.+|. .+++-++.+..-|++++++|.-++...- .+.. |.+.++.
T Consensus 23 ~~ykq~f~~~reEl~EFQeg--SrE~Eaele---sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNEFQEG--SREIEAELE---SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777788887332 223333332 2344455555566666666654332110 0000 1222222
Q ss_pred hhcccccch-HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863 208 AINMGSSSS-QNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 208 ~~~e~e~~~-~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~ 249 (790)
.|.---..+ ..|-.-|.||..+|..|+--+|.-+.-|+.-++
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeq 140 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQ 140 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHH
Confidence 221100111 223445666666677776666654444444333
No 123
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.19 E-value=24 Score=38.84 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=20.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
..+-+.+.++.++++....++.+...+...++.++..+
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666655555555555555555554443
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.00 E-value=15 Score=36.58 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
..+.|+....+.+.|+.+|.+|+++.+-.|+.
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 34445555556666666666666665555543
No 125
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.99 E-value=48 Score=42.32 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=64.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccC--hhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhch
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKAS--ESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNE 294 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~--Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~d 294 (790)
++.-.+|.-+++....+|.+...+..+-++++..+.+...+- +-.-+.++..|++.-+..-.+|.+++..+..+.-.-
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~ 882 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI 882 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777777888888888888888888887777777666552221 122455777888888888888888888887776543
Q ss_pred HHHHHHH--HHhhHHHhhhhhhc
Q 003863 295 VEELAYL--RWVNSCLRDELQNS 315 (790)
Q Consensus 295 vEELv~L--R~~NacLR~EL~~~ 315 (790)
-..+..+ -|.|+-....|.+.
T Consensus 883 es~ie~~~~er~~lL~~ckl~~I 905 (1141)
T KOG0018|consen 883 ESKIERKESERHNLLSKCKLEDI 905 (1141)
T ss_pred hhHHHHHHHHHHHHHHHhhhccc
Confidence 3333321 45454333344443
No 126
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.91 E-value=54 Score=40.89 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHH
Q 003863 263 ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSC 307 (790)
Q Consensus 263 va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~Nac 307 (790)
.+++.+-++.|.-.--.++.|++-|+.-++ -+|-...|-|..|
T Consensus 419 L~~a~ekld~mgthl~mad~Q~s~fk~Lke--~aegsrrraIeQc 461 (1265)
T KOG0976|consen 419 LQEALEKLDLMGTHLSMADYQLSNFKVLKE--HAEGSRRRAIEQC 461 (1265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhHHHHHH--hhhhhHhhHHHHH
Confidence 456677777777666678888776665544 3333333445555
No 127
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.74 E-value=26 Score=42.72 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
+..+..-+...+.+++.++..+..+.....+++.++.
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~ 196 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELD 196 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555667777666666655555554443
No 128
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.39 E-value=12 Score=42.25 Aligned_cols=16 Identities=13% Similarity=-0.199 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHhhhc
Q 003863 603 DVVAFVKWLDDELGFL 618 (790)
Q Consensus 603 dlv~Fv~wlD~eL~~L 618 (790)
+|..=...|+.+...|
T Consensus 243 eL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3333344444444444
No 129
>PHA03247 large tegument protein UL36; Provisional
Probab=87.33 E-value=0.79 Score=61.32 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.9
Q ss_pred CchHHHH
Q 003863 664 VPCDLAL 670 (790)
Q Consensus 664 ~pc~~al 670 (790)
++.+.+|
T Consensus 3092 v~a~~~l 3098 (3151)
T PHA03247 3092 LSANAAL 3098 (3151)
T ss_pred cchhhHH
Confidence 4444433
No 130
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.24 E-value=0.44 Score=59.41 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=9.5
Q ss_pred hHHhhhhhheeecccCC
Q 003863 751 MLLQGVRFAFRIHQFAG 767 (790)
Q Consensus 751 lL~qgvrFAfRvhqFAG 767 (790)
+||..+|.-==||-|.|
T Consensus 266 ~l~~~ird~ny~Ylf~~ 282 (2365)
T COG5178 266 MLWESIRDVNYVYLFSG 282 (2365)
T ss_pred ccHHHhccccEEEEecC
Confidence 56666665555555543
No 131
>PF15195 TMEM210: TMEM210 family
Probab=87.23 E-value=0.35 Score=45.22 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.2
Q ss_pred ccccCCCC
Q 003863 436 SSQKYDFD 443 (790)
Q Consensus 436 ~~~KY~~~ 443 (790)
+++.|+.-
T Consensus 55 lv~~~GvQ 62 (116)
T PF15195_consen 55 LVGHFGVQ 62 (116)
T ss_pred hhhccccc
Confidence 33444433
No 132
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.11 E-value=14 Score=38.77 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHH-----HHHHHhhhhhhh-cccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSV-----ILERKNDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~-----~~~q~ee~~~~~-~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
+-.+...|..+.++++.|+.++.+... .....+ ..+.+ .+.+.++..|..++..+++.+.+++....++...|
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQ-QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665544 111100 01111 11134455555555555555555555555555555
Q ss_pred hhhhhhh
Q 003863 245 SSMENQL 251 (790)
Q Consensus 245 d~ae~~~ 251 (790)
+.....+
T Consensus 101 ~~~~~~l 107 (302)
T PF10186_consen 101 EQRRSRL 107 (302)
T ss_pred HHHHHHH
Confidence 5444433
No 133
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=87.08 E-value=6.9 Score=40.78 Aligned_cols=106 Identities=21% Similarity=0.136 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH--HHHHH--
Q 003863 128 DSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS--VILER-- 201 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~--~~~~q-- 201 (790)
+.|+--.++|-.|=.+.|.+-+-. -++.. ++|.-++|+.--.||..|+.--.-|+.+|++|.+.+--+. +.+.+
T Consensus 12 ell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkl 91 (195)
T PF10226_consen 12 ELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKL 91 (195)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHH
Confidence 345555566666767777776666 66666 8899999999999999999999999999999887663222 11111
Q ss_pred --H-hh-------hhhhhccc-ccchHhHHHHHHHHHHHHHHH
Q 003863 202 --K-ND-------NKNAINMG-SSSSQNLEMEVVELRRLNKEL 233 (790)
Q Consensus 202 --~-ee-------~~~~~~e~-e~~~~~LE~Ev~ELRr~NkeL 233 (790)
+ |. ++..+... +++|++||....+|-|.|.+|
T Consensus 92 arEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 92 AREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLEL 134 (195)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 11 12222222 588899998888888888766
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=57 Score=39.17 Aligned_cols=53 Identities=25% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHhhhchhHHHHHHHHhhhhhchH----------HH----HHHHHHhhHHHhhhhhhcccccC
Q 003863 268 AEALVLRHTNEDLSKQVEGLQMSRLNEV----------EE----LAYLRWVNSCLRDELQNSCSTTN 320 (790)
Q Consensus 268 eE~~~Lr~~NE~L~~QlE~f~~dR~~dv----------EE----Lv~LR~~NacLR~EL~~~~sa~d 320 (790)
=||.+|||++..|.+.++.+++.-++++ || |..-|=-.-.||.||..|.++-|
T Consensus 194 VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~ 260 (772)
T KOG0999|consen 194 VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAED 260 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhh
Confidence 4677777777777777777666543221 11 11112222358888888855544
No 135
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.80 E-value=54 Score=41.69 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhc------hh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 125 LELDSLRSLLQESKER-------EFKLQAELSEWKRN------PK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeR-------E~kLE~eLlEyKEQ------E~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
-+++.++..|.+|++- ..=|+.||..|+-| |+ |..|+.+|.--..|.++..-+++-|..||..|+-
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4555566666666655 44456777777333 33 7777777777777778888888888888877775
Q ss_pred HHHH
Q 003863 191 QLAA 194 (790)
Q Consensus 191 qv~e 194 (790)
+-+.
T Consensus 337 q~eq 340 (1195)
T KOG4643|consen 337 QKEQ 340 (1195)
T ss_pred HHHH
Confidence 5543
No 136
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.60 E-value=25 Score=38.81 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=31.9
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
...+.++..++.++|+...+|+.+...+..+++....+.
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999988888887665444
No 137
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.50 E-value=18 Score=45.51 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-HHH-------hh--hhchh------HHHHHHHHHHhhhhHHHHHHHHhhhHHHh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQA-ELS-------EW--KRNPK------VLELERELEAKKIENDEIVRRVGMLEDEK 185 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~-eLl-------Ey--KEQE~------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~ 185 (790)
.+.++|+.|+-.|+.+.+|+..+.. +++ +| ..++. ..-+..+++....++.-+.-++..|+.+.
T Consensus 206 ~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~ 285 (1072)
T KOG0979|consen 206 RLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEK 285 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHH
Confidence 3478888888888888888887762 333 33 22222 12233333333334444455555555555
Q ss_pred hhHHHHHHHHHHHHHH----HhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003863 186 TSLSEQLAALSVILER----KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (790)
Q Consensus 186 ~rLq~qv~e~~~~~~q----~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~ 254 (790)
..+.+++......... .++....-.++++.+..+-.+.+.|++.-...|...-....-+..+|.-+...
T Consensus 286 ~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 286 KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 5555555444332221 00000000112233333334444444444444555555566666666655443
No 138
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.46 E-value=0.21 Score=59.95 Aligned_cols=129 Identities=26% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhc-h---h-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW---KRN-P---K-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---KEQ-E---~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
++.++..++..|+.....|.++-..||.+|..+ +.| + . |.+|+..+.....+++.|...+..|+++...|+.
T Consensus 326 d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~ 405 (713)
T PF05622_consen 326 DLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEE 405 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555666666666665 111 1 1 5555555555444444443333333333333322
Q ss_pred HHHHHH----HHHHHHhhh----------hhhhcccccchHhHHHHH--HHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 191 QLAALS----VILERKNDN----------KNAINMGSSSSQNLEMEV--VELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 191 qv~e~~----~~~~q~ee~----------~~~~~e~e~~~~~LE~Ev--~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
+..... .+.+..++. ...+.........|..|+ .++|....+||+||.-|..+.+.+
T Consensus 406 eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~ 478 (713)
T PF05622_consen 406 EKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEES 478 (713)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccc
Confidence 211111 111110000 000111123344454444 478888888999999887776665
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.34 E-value=16 Score=35.38 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=23.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
+.|..|..++.+++.....|+.+..-....|+..+...
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55666666666666666666666666666666555443
No 140
>PRK01156 chromosome segregation protein; Provisional
Probab=86.05 E-value=48 Score=41.02 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=19.3
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQA 146 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~ 146 (790)
|......+..+|..|+.-++.+..+-.+++.
T Consensus 474 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 504 (895)
T PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKK 504 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777777777777666655554443
No 141
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.74 E-value=66 Score=38.63 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=22.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
+.+.+++.++..--.....+=.+-..|+.||..-
T Consensus 360 k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 360 KEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666666666666666543
No 142
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.58 E-value=75 Score=37.77 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=49.1
Q ss_pred cccccCCCCcChHHHHHHHHHHHHHHHHHH------------HHHHHHHHhh-----hhchh--------------HHHH
Q 003863 112 THRRQSSGSRDLFLELDSLRSLLQESKERE------------FKLQAELSEW-----KRNPK--------------VLEL 160 (790)
Q Consensus 112 ~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE------------~kLE~eLlEy-----KEQE~--------------I~EL 160 (790)
....|.-...+...+|..|+..+......= ..++.++..+ +|..+ +..+
T Consensus 243 ~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~ 322 (569)
T PRK04778 243 VEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHA 322 (569)
T ss_pred HHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444677666778889888888887732222 2223333333 22222 3344
Q ss_pred HHHHHHhhhhHHHHHHH----------HhhhHHHhhhHHHHHHHHH
Q 003863 161 ERELEAKKIENDEIVRR----------VGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 161 q~qL~~k~~Ei~~L~~k----------I~sLeaE~~rLq~qv~e~~ 196 (790)
+.++..-..|++.|++. +..++.+.+.+++++....
T Consensus 323 ~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 323 KEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555577777776 6667766666666666443
No 143
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.54 E-value=62 Score=37.11 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=25.6
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSE 150 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlE 150 (790)
...+..++..|+..+..|+.+..+|+.++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 92 NGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999887753
No 144
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.51 E-value=37 Score=35.34 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=54.7
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r 187 (790)
....+.+...|..+|..-+..+++.-..|+.+|..| ++... +..++.+|..-.-|-..|.+++..++.|...
T Consensus 46 ~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 46 NEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788999999999999999999999999999 55544 4444555555555555666666666666655
Q ss_pred HHHHHH
Q 003863 188 LSEQLA 193 (790)
Q Consensus 188 Lq~qv~ 193 (790)
|.....
T Consensus 126 L~~kf~ 131 (201)
T PF13851_consen 126 LYRKFE 131 (201)
T ss_pred HHHHHH
Confidence 555444
No 145
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=85.23 E-value=8.5 Score=36.10 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hhchh-----HHHH---HHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 128 DSLRSLLQESKEREFKLQAELSEW----KRNPK-----VLEL---ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-----I~EL---q~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
..+...+..|..++..|+..+..| ++.+. +... .+....+..+|..|..+|+.|+++..++++.|..|
T Consensus 28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556688999999999877777 66555 2222 22333456699999999999999999999999888
Q ss_pred HH
Q 003863 196 SV 197 (790)
Q Consensus 196 ~~ 197 (790)
..
T Consensus 108 ~~ 109 (126)
T PF13863_consen 108 KK 109 (126)
T ss_pred HH
Confidence 64
No 146
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.14 E-value=14 Score=45.18 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHhh-hhchh----HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 125 LELDSLRSLLQESKERE-------FKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE-------~kLE~eLlEy-KEQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
.++..|+.-+++...+. ..++..|+-. +|--. .-+|+++|..+.+++..+.-+..+|+..-.-++.++
T Consensus 49 e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 49 EMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL 128 (916)
T ss_pred HHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence 44555555554443332 3344444444 44444 668999999999988888888888888877777777
Q ss_pred HHHHHHHH---------HH-hhhhhhh---cccccchHh----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 003863 193 AALSVILE---------RK-NDNKNAI---NMGSSSSQN----LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA 255 (790)
Q Consensus 193 ~e~~~~~~---------q~-ee~~~~~---~e~e~~~~~----LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~ 255 (790)
....++-. |. .+..+.. .+++.++.. ++-+..||.|++..+.+.-..-..=.++++..+.--
T Consensus 129 ~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlh- 207 (916)
T KOG0249|consen 129 QQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLH- 207 (916)
T ss_pred HhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHH-
Confidence 66665222 11 1112222 122344444 444455566666555554332222222222111000
Q ss_pred ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchH
Q 003863 256 KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295 (790)
Q Consensus 256 ~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dv 295 (790)
..-...+.++.+.|-++-+.+.+|++.++.+++...
T Consensus 208 ----lkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~ 243 (916)
T KOG0249|consen 208 ----LKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLR 243 (916)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001123466677777777777777776666655433
No 147
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.04 E-value=52 Score=34.27 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863 259 ESDIISKIKAEALVLRHTNEDLSKQVE 285 (790)
Q Consensus 259 Es~~va~~~eE~~~Lr~~NE~L~~QlE 285 (790)
|..-+..+..++..|..+...|...|.
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666655554
No 148
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.93 E-value=54 Score=36.46 Aligned_cols=126 Identities=22% Similarity=0.217 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhh--hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQ----------------AELSEW--KRNPK-VLELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE----------------~eLlEy--KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
-..-+..|+..+.+++++=.+-= .++|.- -+++. +.+|++.+..+.-++..++..+..|+.
T Consensus 75 se~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 75 SEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE 154 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888877654421 122221 44444 889999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHhh-----hhhhh-----------------cc---c-ccc-hHhHHHHHHHHHHHHHHHHHH
Q 003863 184 EKTSLSEQLAALSVILERKND-----NKNAI-----------------NM---G-SSS-SQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 184 E~~rLq~qv~e~~~~~~q~ee-----~~~~~-----------------~e---~-e~~-~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
+...|+++|.+...+.+++=- +...+ .| + +.. -+-|.+.+..|=-.+++|+.|
T Consensus 155 e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~q 234 (302)
T PF09738_consen 155 ELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQ 234 (302)
T ss_pred HHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999888766664100 10000 00 0 111 234555555555666777777
Q ss_pred Hhhhhhhhhhhh
Q 003863 237 KRNLACKFSSME 248 (790)
Q Consensus 237 kreL~~KLd~ae 248 (790)
.+.|...|+..+
T Consensus 235 v~klk~qLee~~ 246 (302)
T PF09738_consen 235 VRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 149
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.58 E-value=45 Score=44.24 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=27.6
Q ss_pred HhhhhHHHHHHHHHHhhhccc--chHHHHHHHH-------hHHHHhhhccchhhhhhhcCCCc
Q 003863 579 VATQGEFVNSLIREVNNAVYQ--NIEDVVAFVK-------WLDDELGFLVDERAVLKHFDWPE 632 (790)
Q Consensus 579 v~~~~~~I~~L~~eI~~~~~~--dm~dlv~Fv~-------wlD~eL~~L~DEraVL~~F~~Pe 632 (790)
+..++.-|..|-..+..+.|. +.+.+..=+. -+++++--|+|-.++-.||+|-.
T Consensus 913 ~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~ 975 (1486)
T PRK04863 913 VQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYED 975 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 444455555555555555442 2233332222 23333444777788888887654
No 150
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.55 E-value=7.1 Score=35.83 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=46.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchhHHHHHHHHHH------------hhhhHHHHHHHHhhhHHHh
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW---KRNPKVLELERELEA------------KKIENDEIVRRVGMLEDEK 185 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---KEQE~I~ELq~qL~~------------k~~Ei~~L~~kI~sLeaE~ 185 (790)
.....||..|+..+..|+..-..|.++=++. +| +..|+.+|.. -..++..|+.++..|+.+|
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e---L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en 91 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE---LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN 91 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777777777777776666665432221 21 3344444442 2348899999999999999
Q ss_pred hhHHHHHHH
Q 003863 186 TSLSEQLAA 194 (790)
Q Consensus 186 ~rLq~qv~e 194 (790)
..|+.+++|
T Consensus 92 ~~L~~~~~e 100 (100)
T PF01486_consen 92 NQLRQKIEE 100 (100)
T ss_pred HHHHHHhcC
Confidence 999988753
No 151
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=84.51 E-value=0.3 Score=60.13 Aligned_cols=148 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----------KRNPK-VLELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-----------KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
+.....++..+|+.|+..-..|..-...|+.++.++ -+.|. ++.|+.+|..-...++.....++-|..
T Consensus 129 h~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~ 208 (859)
T PF01576_consen 129 HQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTE 208 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666666666666666655 11112 445555555555555555555555555
Q ss_pred HhhhHHHHHHHHHHHHHHH------------------hh-------hhhhhcccccchHhHHHHHHHHHHHHHHHHHHHh
Q 003863 184 EKTSLSEQLAALSVILERK------------------ND-------NKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR 238 (790)
Q Consensus 184 E~~rLq~qv~e~~~~~~q~------------------ee-------~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ekr 238 (790)
.+.+|+.++.++....+.. ++ ..+....+...++.|+.++..||-.+.+-+..+.
T Consensus 209 ~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~ 288 (859)
T PF01576_consen 209 QKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS 288 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5555555555554333310 00 0111122347788888888888888888888888
Q ss_pred hhhhhhhhhhhhhhhhcccChhhHH
Q 003863 239 NLACKFSSMENQLTSLAKASESDII 263 (790)
Q Consensus 239 eL~~KLd~ae~~~~~~~~~~Es~~v 263 (790)
+|-..|..+...+..+-.--|.+.+
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~ 313 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAE 313 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888888777766655444444433
No 152
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=84.48 E-value=1.4 Score=53.76 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=9.7
Q ss_pred chhHHHHHHhhccc
Q 003863 524 APQVVEFYHSLMKR 537 (790)
Q Consensus 524 sPevvelYrsL~~r 537 (790)
.+.+..|||...+-
T Consensus 393 ~~~lk~l~wdk~~~ 406 (833)
T KOG1922|consen 393 KNKLKPLHWDKTRG 406 (833)
T ss_pred CCCCCCccccccCC
Confidence 46677788877653
No 153
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=84.24 E-value=52 Score=33.63 Aligned_cols=189 Identities=17% Similarity=0.213 Sum_probs=88.5
Q ss_pred CCCccccccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchh-HHHHHHHHHHhhhhHHHHH
Q 003863 106 HPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW---------KRNPK-VLELERELEAKKIENDEIV 175 (790)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------KEQE~-I~ELq~qL~~k~~Ei~~L~ 175 (790)
+++.|...+.|. ..++.-|..|...+..+-.+...|-..+.+| -|.+. +..+=.++..-...+..+-
T Consensus 22 ~D~~F~~~~~~~---~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~ 98 (236)
T PF09325_consen 22 PDEWFEEIKDYV---DKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELL 98 (236)
T ss_pred CCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 344555433343 3456677777777777777777777777777 12221 2222222222111221111
Q ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 003863 176 RRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA 255 (790)
Q Consensus 176 ~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~ 255 (790)
. ..-..+...|.+-+.+|.....--++++.+-......+..++.++.--|.....|......=..|++.++..+..+.
T Consensus 99 ~--~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~ 176 (236)
T PF09325_consen 99 E--EQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAE 176 (236)
T ss_pred H--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 1 11233444566666666655553222211111111112222222222222222222221111344444444442221
Q ss_pred ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHH
Q 003863 256 KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCL 308 (790)
Q Consensus 256 ~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacL 308 (790)
.-+..++.++. ..++.+..+++.|+..|..|+...+. .|++..+
T Consensus 177 -----~~~~~~~~~~~---~is~~~k~E~~rf~~~k~~d~k~~l~-~~~~~~i 220 (236)
T PF09325_consen 177 -----RRVEQAKDEFE---EISENIKKELERFEKEKVKDFKSMLE-EYAESQI 220 (236)
T ss_pred -----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 12223343333 55678888999999999999988885 5566444
No 154
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.20 E-value=58 Score=43.84 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=31.2
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~ 252 (790)
...-..||.|+.++...+..|..+|+.|--+++..=+.++
T Consensus 1098 ~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~ 1137 (1822)
T KOG4674|consen 1098 SEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSA 1137 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3556778888888888888888888888888876655544
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.02 E-value=21 Score=36.83 Aligned_cols=120 Identities=11% Similarity=0.135 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--Hhhh
Q 003863 130 LRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--KNDN 205 (790)
Q Consensus 130 LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q--~ee~ 205 (790)
++..|..+-++-..=+.-|..| ++.+. +.+++..+..-.+.-..|.+++..++.+..+++.++......-.. -.++
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a 89 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREA 89 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444433344444444 66666 888888888888888888888888888888888777544321110 0111
Q ss_pred hhhhc-----------c---cccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863 206 KNAIN-----------M---GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 206 ~~~~~-----------e---~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~ 249 (790)
+.+.. . ....+..|...+.+|+....+++.++..|.-+...|++
T Consensus 90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a 147 (221)
T PF04012_consen 90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKA 147 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1 12445555555555566666666666666666655554
No 156
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.81 E-value=60 Score=41.26 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=28.6
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.++....+||.++.|++...+.++.+.++-..|+..-.
T Consensus 273 pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ 310 (1072)
T KOG0979|consen 273 PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKF 310 (1072)
T ss_pred hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888877766665443
No 157
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.76 E-value=72 Score=39.05 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=71.5
Q ss_pred ccCCCCCCCCCCccccccccCCCCcChH-HHHHHHHHHHHHHHHHH-HHHHHHHHhh--------hhchh-----HHHHH
Q 003863 97 ACSMNPAQVHPNSYQTHRRQSSGSRDLF-LELDSLRSLLQESKERE-FKLQAELSEW--------KRNPK-----VLELE 161 (790)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~EI~~LR~~V~eLqeRE-~kLE~eLlEy--------KEQE~-----I~ELq 161 (790)
+|+.++.++.-..| -..+..|+. .+++.||..+.+||+.. .+|+ ++++| ..+.. |.+.+
T Consensus 136 l~~~l~g~~~~~~~-----~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle-kv~~~~~~I~~l~~~Lg~~~~~~vt~~~ 209 (660)
T KOG4302|consen 136 LCEELGGPEDLPSF-----LIADESDLSLEKLEELREHLNELQKEKSDRLE-KVLELKEEIKSLCSVLGLDFSMTVTDVE 209 (660)
T ss_pred HHHHhcCCccCCcc-----cccCcccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcccchhhhh
Confidence 47777777332222 223344555 89999999999998654 4444 34444 22222 44555
Q ss_pred HHHHHhh---------hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------Hhhhhhhh----ccc-------c
Q 003863 162 RELEAKK---------IENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNKNAI----NMG-------S 213 (790)
Q Consensus 162 ~qL~~k~---------~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q--------~ee~~~~~----~e~-------e 213 (790)
.-|.--. ..++.|...|..|+++....-+.+.++..-.-. .++..+.+ .|+ .
T Consensus 210 ~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~ 289 (660)
T KOG4302|consen 210 PSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSL 289 (660)
T ss_pred hhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccH
Confidence 5554322 267888888888888887766666655543331 23332221 122 2
Q ss_pred cchHhHHHHHHHH
Q 003863 214 SSSQNLEMEVVEL 226 (790)
Q Consensus 214 ~~~~~LE~Ev~EL 226 (790)
..++.+|.||.-|
T Consensus 290 d~I~~ve~Ev~Rl 302 (660)
T KOG4302|consen 290 DIIEQVEKEVDRL 302 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777887654
No 158
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.72 E-value=27 Score=38.77 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhccc----ccchHhHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMG----SSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~----e~~~~~LE~Ev~ELRr~Nke 232 (790)
+..|+.....-...+..++.-+-.|......|+.++.....+.. +...+|.+. ...+.++..++..++....+
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~---e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED---ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556665666666666666666655433333 333444322 37788888899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhh
Q 003863 233 LQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 233 LQ~EkreL~~KLd~ae~~~ 251 (790)
+|.+..++..+++....+.
T Consensus 230 ~~~~l~~l~~~I~~~~~~k 248 (312)
T smart00787 230 LEEELQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888888776554
No 159
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=83.68 E-value=99 Score=38.77 Aligned_cols=90 Identities=16% Similarity=0.064 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---------------Hhhh-hhhhccc--------
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER---------------KNDN-KNAINMG-------- 212 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q---------------~ee~-~~~~~e~-------- 212 (790)
+.+|+-+|.....+|..|..+...||.|.+.||+-++.+..-.+| +++. ++++ +|
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~-eIf~~~~~L~ 172 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH-DIFMIGEDLH 172 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH-HHHHHHHHHh
Confidence 557777888888888888888888888888888887776655443 1111 2221 11
Q ss_pred --ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 213 --SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 213 --e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
-..+.+++.+..-+-..|.++--++.++..||+-+
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~ 209 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED 209 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14566666666666555655555555555555533
No 160
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.68 E-value=7 Score=45.71 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
-.+|..+|+...-+++.....|..+.++..+|+ .+++....+-+++..|..++..++=.|-..+.=||+.=-.|+-+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~ 412 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPD 412 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Confidence 459999999999999999999999999999998 33333333223333333334444444444444444444444444
Q ss_pred Hhhhhhhhhhhhhh
Q 003863 237 KRNLACKFSSMENQ 250 (790)
Q Consensus 237 kreL~~KLd~ae~~ 250 (790)
-.+|..|||.-.++
T Consensus 413 EE~Lr~Kldtll~~ 426 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQ 426 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544433
No 161
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.67 E-value=16 Score=44.39 Aligned_cols=34 Identities=26% Similarity=0.176 Sum_probs=23.6
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 118 ~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
..+++...|++.+...|..|.+.=.+=|.+|+..
T Consensus 339 ~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~ 372 (961)
T KOG4673|consen 339 SDSDDVQLELDKTKKEIKMLNNALEAREAQLLAD 372 (961)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557888888888888776655666666665
No 162
>PRK15313 autotransport protein MisL; Provisional
Probab=83.61 E-value=1.2 Score=55.12 Aligned_cols=9 Identities=22% Similarity=0.157 Sum_probs=4.8
Q ss_pred HhhccccCC
Q 003863 532 HSLMKRDSR 540 (790)
Q Consensus 532 rsL~~r~~~ 540 (790)
.+|-.|.+.
T Consensus 655 ~tLhDR~GE 663 (955)
T PRK15313 655 TRLHDRLGE 663 (955)
T ss_pred ccHHHhCCC
Confidence 456666443
No 163
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.57 E-value=97 Score=38.70 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=33.5
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~ 253 (790)
..+..-+.+|.-|++....|+...++-.++|+....++.+
T Consensus 385 d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 385 DMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778888889998888999999888888888887765
No 164
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.55 E-value=82 Score=37.92 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=39.6
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhh----hhHHHHHHHHhhhHHHhhhHH
Q 003863 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKK----IENDEIVRRVGMLEDEKTSLS 189 (790)
Q Consensus 119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~----~Ei~~L~~kI~sLeaE~~rLq 189 (790)
.......+++.|...+..++.+-..++.++..+ .+.+. +.+|+..+.... .+.+.|+.++..++++..+.+
T Consensus 203 ~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~ 282 (650)
T TIGR03185 203 LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANR 282 (650)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666655555555 11122 444444333222 134456666666666666655
Q ss_pred HHHHHH
Q 003863 190 EQLAAL 195 (790)
Q Consensus 190 ~qv~e~ 195 (790)
.++.++
T Consensus 283 ~~l~~l 288 (650)
T TIGR03185 283 AQLREL 288 (650)
T ss_pred HHHHHH
Confidence 555444
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.40 E-value=40 Score=41.83 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=22.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.++..||.|+..=|....++...-++|-.+|+...
T Consensus 680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 680 SKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 56666777766666666666655666666666554
No 166
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.22 E-value=37 Score=33.01 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI 198 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~ 198 (790)
|..|+.+|.....|+..|+.++..|+.+...+.++++....-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666677777777777777777777766655443
No 167
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.06 E-value=75 Score=39.97 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=39.1
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 184 EKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 184 E~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
|.++|++++++....+.|-+.+.-.-.+.+...-..+....+|.....+|..+..+|..|++....|+
T Consensus 387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl 454 (980)
T KOG0980|consen 387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL 454 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477777777777777655543333334444444455555555555566666666666666665555
No 168
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.03 E-value=1.1e+02 Score=36.35 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE 184 (790)
+..|+..+..+-.||..|+.++.+|...
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555555555555555555444433
No 169
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.97 E-value=84 Score=35.03 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=41.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..+.+|=.|+.+|+..-.++...--+|+...+..-.+ | .++-++++.+|..-+.+-.++..+......
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~-----------m-~k~~~~~De~Rkeade~he~~ve~~~~~~e 225 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEE-----------M-IKLFEEADELRKEADELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455555666666666666666555555554433211 2 245667777776666777666666655554
Q ss_pred hHHHHH
Q 003863 294 EVEELA 299 (790)
Q Consensus 294 dvEELv 299 (790)
.-++|.
T Consensus 226 ~~ee~~ 231 (294)
T COG1340 226 LHEEFR 231 (294)
T ss_pred HHHHHH
Confidence 444444
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.92 E-value=9.9 Score=37.84 Aligned_cols=63 Identities=30% Similarity=0.365 Sum_probs=47.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
..+..||..|+..+.+|+.....|+.+|..+.-..+..||..++..-..|+..|..++..|+.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778999999999999999999999988866666666766666666666666666666665
No 171
>PRK15313 autotransport protein MisL; Provisional
Probab=82.89 E-value=1.2 Score=55.15 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=5.0
Q ss_pred hhHHhhhhh
Q 003863 750 YMLLQGVRF 758 (790)
Q Consensus 750 ~lL~qgvrF 758 (790)
.+.||+|++
T Consensus 829 QLiwq~V~~ 837 (955)
T PRK15313 829 QVVWMGVQA 837 (955)
T ss_pred EEEEEEccC
Confidence 355655555
No 172
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=50 Score=38.72 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=51.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE 285 (790)
.++..-=+|+.|+=+.+-.+-.|-++|-.++..-+.+..- .+ ..++.++|..+|.+|+.|..+|.
T Consensus 455 t~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l-~s------lEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 455 TRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL-KS------LEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH-hh------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667888999999999999999999999876544321 11 35889999999999999998874
No 173
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=82.79 E-value=0.39 Score=54.09 Aligned_cols=10 Identities=0% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHHHhhc
Q 003863 526 QVVEFYHSLM 535 (790)
Q Consensus 526 evvelYrsL~ 535 (790)
.+.+||+---
T Consensus 50 ~LEdLF~~YG 59 (386)
T PF01698_consen 50 GLEDLFQGYG 59 (386)
T ss_dssp ----------
T ss_pred hHHHHHhhcc
Confidence 6777776543
No 174
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=82.72 E-value=2 Score=49.21 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=7.6
Q ss_pred hhhhhHhhhccchh
Q 003863 558 RSSMIGEIENRSSH 571 (790)
Q Consensus 558 r~~mi~Ei~nRS~~ 571 (790)
..+|-+|+.+|-.+
T Consensus 259 ~~~l~a~~~~~~~~ 272 (409)
T KOG4590|consen 259 MASLMAEMAKRLAR 272 (409)
T ss_pred hhhhhhhhhhccce
Confidence 33456666666544
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.59 E-value=49 Score=33.04 Aligned_cols=112 Identities=21% Similarity=0.124 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK 202 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ 202 (790)
..++..-+..--+|+.+=..|+.+|... .+++. +..+..-..++|.-|+.+|+.|-.+.++|..++..+..=+.
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~---~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~-- 83 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKEC---LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKE-- 83 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444555555556666666666666555 33333 22223334556777777777777777777766655442221
Q ss_pred hhhhhhh-cccccchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 203 NDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 203 ee~~~~~-~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
.+... .....+|.+||.-...+++....++.++..+..
T Consensus 84 --~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e 122 (140)
T PF10473_consen 84 --NLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE 122 (140)
T ss_pred --HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 00000 111245666666666666666666666444333
No 176
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.53 E-value=38 Score=35.76 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=17.9
Q ss_pred cchHhHHHHHHHHHHHHHHH
Q 003863 214 SSSQNLEMEVVELRRLNKEL 233 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeL 233 (790)
.++..||.|+.+||.....+
T Consensus 87 ekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 87 EKLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhhHHHHHHHHHHHHhh
Confidence 77999999999999988887
No 177
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.26 E-value=48 Score=41.04 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=9.5
Q ss_pred HHHHHHHhhhchhHHHHHH
Q 003863 267 KAEALVLRHTNEDLSKQVE 285 (790)
Q Consensus 267 ~eE~~~Lr~~NE~L~~QlE 285 (790)
.+|+..||+-+-+|..-+.
T Consensus 535 DaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 535 DAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544433
No 178
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.25 E-value=38 Score=36.93 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKR 238 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~Ekr 238 (790)
+-+.+|+.+|-.||+.+..|+.+-.
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678888888888888888887765
No 179
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.10 E-value=32 Score=34.50 Aligned_cols=30 Identities=33% Similarity=0.277 Sum_probs=14.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
++++..++.+++....+++.....+..++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 153 LQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444444443
No 180
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=81.65 E-value=3.1 Score=43.76 Aligned_cols=66 Identities=29% Similarity=0.326 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHH-HHHHHHHHHhhhchhHHHHHHHH
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIIS-KIKAEALVLRHTNEDLSKQVEGL 287 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va-~~~eE~~~Lr~~NE~L~~QlE~f 287 (790)
..++.++.+|.-.+++|+....++..|+++++..-+.. -+++. ++++|+.-|+..|-.|..||+..
T Consensus 188 ~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-----r~ieEkk~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 188 TRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-----REIEEKKMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888888889999999999999999999764332 22333 88999999999999999999854
No 181
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.19 E-value=30 Score=34.68 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
+.+++.++..-..|++.+...+..++.+...++++.....
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444555554455555555555555555555544444333
No 182
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=81.17 E-value=79 Score=33.50 Aligned_cols=177 Identities=20% Similarity=0.181 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh----------H
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTS----------L 188 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r----------L 188 (790)
+.+|..|+..|..|++.--.-|..+... +|.+- ..|-++.++.-.+....+.-++..++++.+. =
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777766555555444444 22222 3344444444333333333334333333222 2
Q ss_pred HHHHHHHHHHHHHH-hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHH
Q 003863 189 SEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIK 267 (790)
Q Consensus 189 q~qv~e~~~~~~q~-ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~ 267 (790)
.+.|+..+.+++.. +.+..+-.-++..+..|+-+..-|...++-|.--.-.+..+++..+.+|..+
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~l------------- 149 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKEL------------- 149 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHH-------------
Confidence 23333333333321 2222222223466677777777776666666666666666666665544332
Q ss_pred HHHHHHhhh---chhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 268 AEALVLRHT---NEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 268 eE~~~Lr~~---NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
.++||+. .+-..+.|..|+..+++.-+.|...+--+.|+..+|+..
T Consensus 150 --tdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 150 --TDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred --HHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2233311 123445666677666665555655444444444666654
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.10 E-value=1.3e+02 Score=36.55 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=30.8
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~ 249 (790)
||-+-+++=..|+.-.-.-.+.||-|...+.-||+-+-+
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~ 533 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFT 533 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333667777778888888889999999999999987754
No 184
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.93 E-value=7.6 Score=42.85 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=30.1
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
+..++.|+.|..+|.....+|+.+..+|...+...+...
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888877776554
No 185
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.83 E-value=6.6 Score=41.14 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=23.7
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
++++...+..+.+|+..|.+|+.|...+..+++.++++.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777777666666666665555443
No 186
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.80 E-value=84 Score=33.57 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 130 LRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 130 LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
++.-|.++.+.-..=+..|..| ++.+. +.++...+.--.++-..|..++..++....+++.+....
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A 78 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA 78 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433334333334 66666 777777777777777788888888888888887766433
No 187
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.54 E-value=12 Score=45.91 Aligned_cols=77 Identities=27% Similarity=0.392 Sum_probs=56.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHH---hhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEA---KKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~---k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
.+++.|..+||.-|++++.||.+| |.+|-|.|. -.-||+|+.. ..+|.+-|+-.|..|++|..-|..|+.+..
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rl---l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARL---LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777766665 334444444 4567777663 446888899999999999999999999999
Q ss_pred HHHH
Q 003863 197 VILE 200 (790)
Q Consensus 197 ~~~~ 200 (790)
++++
T Consensus 149 rLk~ 152 (717)
T PF09730_consen 149 RLKE 152 (717)
T ss_pred HHHH
Confidence 8887
No 188
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=95 Score=38.29 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
+-+..++++..|..+...|.+++..+.....
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~ 520 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTLKASVD 520 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888888888876654444
No 189
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.04 E-value=1.1e+02 Score=35.21 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.=++-|...+..++.+=...|.+|..|
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777
No 190
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.00 E-value=0.56 Score=57.84 Aligned_cols=201 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------h---hchh-HHHHHHHHHHhhhhHHHHHHHH
Q 003863 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEW---------------K---RNPK-VLELERELEAKKIENDEIVRRV 178 (790)
Q Consensus 118 ~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy---------------K---EQE~-I~ELq~qL~~k~~Ei~~L~~kI 178 (790)
....++..-++.....+..|.....+|+.++.++ + -.+. +.+++++|...+..-..|..++
T Consensus 187 ~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l 266 (859)
T PF01576_consen 187 AQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQL 266 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHH
Confidence 3344444444444455555555555555555444 1 1111 5566666776666666777777
Q ss_pred hhhHHHhhhHHHHHHHHHHHHH----H---------------Hhhh---------hhhh-----cccccchHhHHHHHHH
Q 003863 179 GMLEDEKTSLSEQLAALSVILE----R---------------KNDN---------KNAI-----NMGSSSSQNLEMEVVE 225 (790)
Q Consensus 179 ~sLeaE~~rLq~qv~e~~~~~~----q---------------~ee~---------~~~~-----~e~e~~~~~LE~Ev~E 225 (790)
..++.+...|.+++-+....+. | +.++ ++++ .+.+..+.++...+..
T Consensus 267 ~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~ 346 (859)
T PF01576_consen 267 RQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSS 346 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777654432222 0 1111 1111 1223667777777888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc--------Chh-hHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHH
Q 003863 226 LRRLNKELQMEKRNLACKFSSMENQLTSLAKA--------SES-DIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVE 296 (790)
Q Consensus 226 LRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~--------~Es-~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvE 296 (790)
|.++.+.|+.|..++...|+.+.+.++.+.+- .|- ..+..+..+.+.+...+..+..++-.+...-+...+
T Consensus 347 LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e 426 (859)
T PF01576_consen 347 LEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQE 426 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Confidence 88889999999999999999888766655442 110 012223333344444444455555555544444445
Q ss_pred HHHHHHHhhHHHhhhhhhcccc
Q 003863 297 ELAYLRWVNSCLRDELQNSCST 318 (790)
Q Consensus 297 ELv~LR~~NacLR~EL~~~~sa 318 (790)
.+..++-.|..|..|+.++++.
T Consensus 427 ~~e~lere~k~L~~El~dl~~q 448 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQ 448 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhhccchhh
Confidence 5555555666677777766433
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.40 E-value=48 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
...+.|++|.+.|+-++-.-..|+.++...
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888887777777777666666
No 192
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.38 E-value=20 Score=34.38 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
|+.+++...+++..+..++..+-.....|+.++.+...+.+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~ 45 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALE 45 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666667777777777777777777776666655
No 193
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.29 E-value=1e+02 Score=37.61 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhh----hHHHHHHHH---hhhHHHhhhHHHHHHHHH-HHHHHHhhhhhhh-cccccchHhHHHHHHHHH
Q 003863 157 VLELERELEAKKI----ENDEIVRRV---GMLEDEKTSLSEQLAALS-VILERKNDNKNAI-NMGSSSSQNLEMEVVELR 227 (790)
Q Consensus 157 I~ELq~qL~~k~~----Ei~~L~~kI---~sLeaE~~rLq~qv~e~~-~~~~q~ee~~~~~-~e~e~~~~~LE~Ev~ELR 227 (790)
|++|+-=|..+.+ .=+||.++. .+||.++-.|=++|.++- +... +.++ .|.|++++.-|.++-|++
T Consensus 141 IrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLklta-----lEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 141 IRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTA-----LEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHH-----HHHHhhhHHHHHHhHHHHHHHHH
Confidence 5555544444332 223444443 667777766767766552 1111 1111 234555666666666666
Q ss_pred HH------HHHHHHHHhhhhhhhhhhhhhhhhhcc---cChhhHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863 228 RL------NKELQMEKRNLACKFSSMENQLTSLAK---ASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 228 r~------NkeLQ~EkreL~~KLd~ae~~~~~~~~---~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~ 288 (790)
+. +.+||+|.. |.++...++.+.. ..++++..-.+.-...|...++.-..+.+.+.
T Consensus 216 ~~kv~e~~~erlqye~k-----lkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk 280 (861)
T KOG1899|consen 216 QSKVGEVVQERLQYETK-----LKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLK 280 (861)
T ss_pred HHHHHHHHHHHHHHHhh-----cccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 44 566777654 4444433333221 12233333334444555556665555555443
No 194
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=78.79 E-value=38 Score=35.32 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=54.3
Q ss_pred hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH-----------HHHHHH--hhhhhhhcc---ccc
Q 003863 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS-----------VILERK--NDNKNAINM---GSS 214 (790)
Q Consensus 152 KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~-----------~~~~q~--ee~~~~~~e---~e~ 214 (790)
+|.+. |.+.+..|..-.+.-..+.+++..++.....++.+..... ...++. +.+..-+.. ...
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5566666666666666677777766666666665543222 111111 111111111 135
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 215 ~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
.+..|+..+.+|++...++.-.+..|.-|...|+++
T Consensus 114 ~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 114 TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666667777777777777777777777764
No 195
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.75 E-value=1.4e+02 Score=39.50 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
++.+|..|...|..+.++-..|+..+..+
T Consensus 747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 747 LDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655555555555444
No 196
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=78.71 E-value=8 Score=45.69 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=21.9
Q ss_pred hhhHhhhccchhhHHHHHHHhhhhHHHHHHHHHHhhhc
Q 003863 560 SMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAV 597 (790)
Q Consensus 560 ~mi~Ei~nRS~~l~aIk~dv~~~~~~I~~L~~eI~~~~ 597 (790)
++|.++.|-.-|+= |+-=.-.|..+--.|...|..|.
T Consensus 364 ~Iv~~~~nEyevvY-iKpLAg~YktiKKqlenhv~afn 400 (574)
T PF07462_consen 364 NIVPEGINEYEVVY-IKPLAGMYKTIKKQLENHVNAFN 400 (574)
T ss_pred hhhcCcCCccceEE-ecchHHHHHHHHHHHHHHHHHHH
Confidence 77888888776652 44444444444444555666554
No 197
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=78.68 E-value=3.9 Score=46.23 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=21.2
Q ss_pred hhhhhhhHhhhccchhhHHHHHHHhhhhHHHHHHHHH
Q 003863 556 NVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIRE 592 (790)
Q Consensus 556 ~~r~~mi~Ei~nRS~~l~aIk~dv~~~~~~I~~L~~e 592 (790)
+.-=+|-.=|+=|+.|.+++-..--.+..|...+++.
T Consensus 257 FNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA 293 (457)
T KOG0559|consen 257 FNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKA 293 (457)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHH
Confidence 3333666666778888877744433334555555543
No 198
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.62 E-value=1.4e+02 Score=35.47 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=13.2
Q ss_pred cChHHHHHHHHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESK 138 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLq 138 (790)
.++..||..|+..+...+
T Consensus 175 e~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 175 EELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788888888887653
No 199
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.48 E-value=16 Score=36.33 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=54.0
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh-
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL- 292 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~- 292 (790)
..+.+|..++.+|+..+.+|+.+.+.|...|....+.. |.. .+...+..|+.+++.|...|+.|.....
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------t~~----el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------TNE----ELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45677777777777777777777777766666554332 322 4567888888888899999998876433
Q ss_pred ---chHHHHH--HHHHhhHH
Q 003863 293 ---NEVEELA--YLRWVNSC 307 (790)
Q Consensus 293 ---~dvEELv--~LR~~Nac 307 (790)
.+.+.+. |.+|...+
T Consensus 142 vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 3455555 33555543
No 200
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=78.35 E-value=2.7 Score=51.38 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=11.9
Q ss_pred hHHhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 003863 651 LESEVSYYKDDPRVPCDLALKKMVSLSEKM 680 (790)
Q Consensus 651 l~~e~s~~kddp~~pc~~al~Km~~l~dKv 680 (790)
+..++.++++-.++..+.....|..+..++
T Consensus 668 ~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~ 697 (833)
T KOG1922|consen 668 FLSDLSNVESAAKIDLEVLAEECSDLKKGL 697 (833)
T ss_pred ccchhcccchhhccCHHHHHHHHHHHHHHH
Confidence 334444444444443333333444443333
No 201
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.31 E-value=1.1e+02 Score=38.39 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=15.6
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
.++.+...+..++...++|++...+......
T Consensus 275 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~ 305 (908)
T COG0419 275 ELRELERLLEELEEKIERLEELEREIEELEE 305 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443333
No 202
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.22 E-value=37 Score=43.21 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh-------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW-----KRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy-----KEQE~-------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
..|..+...+..|+.+|..++..+.+. |++.. +.|-..++.-.+.++..|.+.|.+++++.++++.+.
T Consensus 814 ~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er 893 (1141)
T KOG0018|consen 814 RSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESER 893 (1141)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 344444445556666777776655554 33222 444555555666688888888889998888888887
Q ss_pred HHHHHHHHHHhhh------hhhhcc--cccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHH
Q 003863 193 AALSVILERKNDN------KNAINM--GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIIS 264 (790)
Q Consensus 193 ~e~~~~~~q~ee~------~~~~~e--~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va 264 (790)
...+...+=++-. ..-|.. ++-.-..|..+.. ||.+..+....|+...=-+-++....+.. ++
T Consensus 894 ~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~--------L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~-~~ 964 (1141)
T KOG0018|consen 894 HNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK--------LQQKLEEKQSVLNRIAPNLKALERLDEVR-FQ 964 (1141)
T ss_pred HHHHHHhhhccccccccCCCccccceecccccccccHHHH--------HHHHHHHHHHHHHHhCcchHHHhhhhhHH-HH
Confidence 7766555522211 111110 1222233333333 33333333333333211111122222222 55
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863 265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (790)
Q Consensus 265 ~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv 299 (790)
.+.+|....|..-.....+++.....|...|.+..
T Consensus 965 ~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F 999 (1141)
T KOG0018|consen 965 EINEEFEAARKEAKKAKNAFNKVKKKRYERFMACF 999 (1141)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888999999988888887666655
No 203
>PRK10698 phage shock protein PspA; Provisional
Probab=78.18 E-value=43 Score=35.38 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=58.2
Q ss_pred hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH-----------HHHHHHH--hhhhhhhccc---cc
Q 003863 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL-----------SVILERK--NDNKNAINMG---SS 214 (790)
Q Consensus 152 KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~-----------~~~~~q~--ee~~~~~~e~---e~ 214 (790)
++.+. +.+++..+..-.+.-..+.+++..++.....++.+..-. +...++. +.+...+.++ ..
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~ 113 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDE 113 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 555555555555666667777777766666665443222 1222211 1111111222 36
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 215 ~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
.+..|...+..|+....++...+..|.-|+.+|+++
T Consensus 114 ~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 114 TLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888888888888888888888763
No 204
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.14 E-value=15 Score=38.49 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq 189 (790)
+.+|+++.+.-..|+..++.++..|++++..++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 205
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.13 E-value=28 Score=37.23 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
+.+|+-+++....+...|..+..-++.++.+|..+.
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEA 70 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555556655555555555555443
No 206
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.09 E-value=1.8e+02 Score=35.92 Aligned_cols=165 Identities=21% Similarity=0.308 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhH----HHhhhHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW--------KRNPK-VLELERELEAKKIENDEIVRRVGMLE----DEKTSLS 189 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy--------KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLe----aE~~rLq 189 (790)
+.+|+...+..++....-..+|+.+|.-. .+.++ +.|+-+-....+.-+..|+-+|.+|+ .|.+|++
T Consensus 294 L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~ 373 (786)
T PF05483_consen 294 LLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLK 373 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566666554433 33344 44444433334445556666664443 3333333
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccc---cchHhHHHHHHHHHHHHHHHH------HHHhhhhhhhhhhhhhhhhhcccChh
Q 003863 190 EQLAALSVILERKNDNKNAINMGS---SSSQNLEMEVVELRRLNKELQ------MEKRNLACKFSSMENQLTSLAKASES 260 (790)
Q Consensus 190 ~qv~e~~~~~~q~ee~~~~~~e~e---~~~~~LE~Ev~ELRr~NkeLQ------~EkreL~~KLd~ae~~~~~~~~~~Es 260 (790)
.---++..+.-.- .++-.+++ +.-++=|+++.+|+....+=| -+..-.+-.|..++..+.-+...+|.
T Consensus 374 ~~ed~lk~l~~eL---qkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ek 450 (786)
T PF05483_consen 374 KNEDQLKILTMEL---QKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREK 450 (786)
T ss_pred HhHHHHHHHHHHH---HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2111111111110 11111121 222334555777887776655 33333455667777777666666665
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 261 DIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 261 ~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
+ |-.++...+.....+-.-.+|++.+..+-
T Consensus 451 e-v~dLe~~l~~~~~~eq~yskQVeeLKtEL 480 (786)
T PF05483_consen 451 E-VHDLEIQLTTIKESEQHYSKQVEELKTEL 480 (786)
T ss_pred H-HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5 44677777777777778888888776643
No 207
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=77.81 E-value=1.1e+02 Score=37.11 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=19.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACK 243 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~K 243 (790)
..++.+|..|..|.+.++.-|-+..++..+
T Consensus 196 ~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 196 EQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 556666666666666666666666666555
No 208
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=77.76 E-value=3.8 Score=49.85 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 003863 125 LELDSLRSLLQESK 138 (790)
Q Consensus 125 ~EI~~LR~~V~eLq 138 (790)
.=++.||.+.-.+.
T Consensus 209 A~v~aLrilganM~ 222 (759)
T PF05518_consen 209 ACVEALRILGANME 222 (759)
T ss_pred HHHHHHHHHHhhhh
Confidence 44566776665543
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.31 E-value=49 Score=36.84 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=36.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRH 275 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~ 275 (790)
+.+++.++.+++....+...++.++...+..|+.........+-.+ |.++++.++.|-.
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le~ 285 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666554444555444 5578888887764
No 210
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.27 E-value=67 Score=39.09 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003863 127 LDSLRSLLQESKEREFKLQAELSEWK 152 (790)
Q Consensus 127 I~~LR~~V~eLqeRE~kLE~eLlEyK 152 (790)
++.|...+.+++.+=...|.+|.+||
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566666663
No 211
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=77.26 E-value=2.8 Score=50.85 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=15.1
Q ss_pred cccccccccccccccc-ccchhcccccCCCC
Q 003863 73 DVTNQKNSIVASHSRV-KRSLIGDLACSMNP 102 (790)
Q Consensus 73 ~~vk~~n~~~~~~~r~-~~~l~~dl~~~~~~ 102 (790)
+++=.|+++|.++.++ --|||+=.-+|++.
T Consensus 510 dVtYdi~G~~drNrD~L~~DlieLm~ts~~~ 540 (1106)
T KOG0162|consen 510 DVTYDIDGFCDRNRDVLFKDLIELMQTSENP 540 (1106)
T ss_pred ceeeecccccccchhHHHHHHHHHHhccchH
Confidence 3444567777665443 22334444455554
No 212
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.26 E-value=1.5e+02 Score=37.95 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=20.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.+.+++|++|.+.++..+-....-..+...|
T Consensus 695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l 725 (1200)
T KOG0964|consen 695 EDIDQKIDQLNNNMQKVENDRNAFKREHEKL 725 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667888888888776665555544444444
No 213
>PF15195 TMEM210: TMEM210 family
Probab=76.02 E-value=1.6 Score=41.03 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=2.3
Q ss_pred CCCCCC
Q 003863 471 VPNPPP 476 (790)
Q Consensus 471 vP~PPP 476 (790)
|+--||
T Consensus 84 Vsmm~~ 89 (116)
T PF15195_consen 84 VSMMPP 89 (116)
T ss_pred ccccCc
Confidence 333333
No 214
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=75.75 E-value=1.6 Score=57.30 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=6.1
Q ss_pred hhhHHhhhhh
Q 003863 749 DYMLLQGVRF 758 (790)
Q Consensus 749 ~~lL~qgvrF 758 (790)
..+.||.|+|
T Consensus 1679 AQLiw~~V~~ 1688 (1806)
T PRK14849 1679 AQITWMGVKD 1688 (1806)
T ss_pred EEEEEEEecC
Confidence 3466666666
No 215
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.48 E-value=20 Score=43.09 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=28.6
Q ss_pred cccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 114 ~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+++..+-..+..+|..|..+|+.|+++-..|+.++.++
T Consensus 411 ~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~ 448 (652)
T COG2433 411 EEERREITVYEKRIKKLEETVERLEEENSELKRELEEL 448 (652)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677888888888888888888888888777
No 216
>PLN02939 transferase, transferring glycosyl groups
Probab=75.47 E-value=63 Score=41.17 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---------------HHHHHHHHHHhhh--------hHHHHHHHHh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK---------------VLELERELEAKKI--------ENDEIVRRVG 179 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~---------------I~ELq~qL~~k~~--------Ei~~L~~kI~ 179 (790)
+..|++.||.-=..|++.-.-|..+|.+.+|-+. ++||+..+-.... +.+-+=.+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 5778888887777777777777777776622222 6666666654433 3444555666
Q ss_pred hhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhhhhhcccC
Q 003863 180 MLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL-QMEKRNLACKFSSMENQLTSLAKAS 258 (790)
Q Consensus 180 sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeL-Q~EkreL~~KLd~ae~~~~~~~~~~ 258 (790)
.||.=..+.-.|+..+..+..|.++..++-+.++..++ |.-|-.+|-.+-+| |+...-|..+|+..-+.+.+.-...
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (977)
T PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLK--EANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLY 381 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--HhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666666554443333222222211 12223334444442 3333334444544433333322222
Q ss_pred hhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 259 ESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 259 Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
..+ |...++-.+.|..+++.-.-+.-+..|..+
T Consensus 382 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (977)
T PLN02939 382 QES-IKEFQDTLSKLKEESKKRSLEHPADDMPSE 414 (977)
T ss_pred HHH-HHHHHHHHHHHHhhhhcccccCchhhCCHH
Confidence 222 334556666666666654444444444433
No 217
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.38 E-value=72 Score=32.42 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~ 253 (790)
..++.|..+|+.....||.+++.|..++...-.+.+.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~r 121 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSR 121 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 5667777788888888888888888777665444433
No 218
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.31 E-value=31 Score=44.41 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=16.7
Q ss_pred HhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 166 AKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 166 ~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
+-..+.+.++.++.-+|.+-+.||+.+.+.
T Consensus 205 L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 205 LARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666666666666655543
No 219
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.20 E-value=68 Score=39.32 Aligned_cols=89 Identities=19% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
+..+..+|....+.+..+.....+++.++..|++.+..+.....+-+.......-+.+.+..|..++.+|++....|.++
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777788878777663322222100000000001122555555555555555555555
Q ss_pred Hhhhhhhhh
Q 003863 237 KRNLACKFS 245 (790)
Q Consensus 237 kreL~~KLd 245 (790)
..++...++
T Consensus 264 ~~~~~~~~~ 272 (670)
T KOG0239|consen 264 VSLLTREVQ 272 (670)
T ss_pred HHHHHHHHH
Confidence 555544444
No 220
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=75.19 E-value=93 Score=35.10 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003863 126 ELDSLRSLLQESKEREFKLQAELSEWKR 153 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE~eLlEyKE 153 (790)
-++-|...+..++.+=...|.+|..|++
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666633
No 221
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=75.14 E-value=42 Score=32.32 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
-.+|+++|..-..++.-++-.+.-|-.++..|.+.+..+..-.. ...+++.+|+.+|.|+++-...=-+.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~----------s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA----------SRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555555555555555555555444433221110 12366677777777777777665566
Q ss_pred Hhhhhhhhhhhhhhh
Q 003863 237 KRNLACKFSSMENQL 251 (790)
Q Consensus 237 kreL~~KLd~ae~~~ 251 (790)
+.+|-.+|.-+|...
T Consensus 81 k~~l~~r~~k~~~dk 95 (107)
T PF09304_consen 81 KLELESRLLKAQKDK 95 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 667777776666443
No 222
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.09 E-value=3.1 Score=48.10 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=9.3
Q ss_pred ccccccchhHHHHhhc
Q 003863 349 EYSGGRRLSFIKKFKK 364 (790)
Q Consensus 349 ~~s~sKk~~li~KLKk 364 (790)
+||--.|....+++||
T Consensus 320 dfSDDEkEaeak~~kK 335 (483)
T KOG2236|consen 320 DFSDDEKEAEAKQMKK 335 (483)
T ss_pred ccchHHHHHHHHHHHH
Confidence 4555566666666644
No 223
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=74.45 E-value=1.2e+02 Score=37.46 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcc---------c-------ccchHhHHHHHHHHHHHH
Q 003863 167 KKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINM---------G-------SSSSQNLEMEVVELRRLN 230 (790)
Q Consensus 167 k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e---------~-------e~~~~~LE~Ev~ELRr~N 230 (790)
.++|++.|..--...++|-+.|.+-++....++++-+|+.+++-+ + ...+..|-..+.+|....
T Consensus 99 qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L 178 (739)
T PF07111_consen 99 QAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSL 178 (739)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666555666677777777776666666554444444311 1 133444444555555554
Q ss_pred HHHHHHHhhhhhhhhhh
Q 003863 231 KELQMEKRNLACKFSSM 247 (790)
Q Consensus 231 keLQ~EkreL~~KLd~a 247 (790)
+.|+...-.++..|..+
T Consensus 179 ~~le~~r~~e~~~La~~ 195 (739)
T PF07111_consen 179 ESLETRRAGEAKELAEA 195 (739)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 224
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.16 E-value=1.9e+02 Score=37.94 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=13.7
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLA 241 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~ 241 (790)
.++..|+..-..|-..++.|+.+-..+.
T Consensus 588 d~l~~le~~k~~ls~~~~~~~~~~e~~~ 615 (1317)
T KOG0612|consen 588 DKLSLLEESKSKLSKENKKLRSELEKER 615 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443333
No 225
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=73.85 E-value=1.1e+02 Score=36.07 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHH-hhhHHHhhhHHHHHHH
Q 003863 134 LQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRV-GMLEDEKTSLSEQLAA 194 (790)
Q Consensus 134 V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI-~sLeaE~~rLq~qv~e 194 (790)
.+.|.++-. ...++.+| .+... +.-++..+.....++..++.+. ..|++. +++-+.+.+
T Consensus 196 ~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k-EklI~~LK~ 260 (511)
T PF09787_consen 196 RQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSK-EKLIESLKE 260 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHh
Confidence 344555544 33355555 22222 4444444555556777777553 344443 333444444
No 226
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=73.74 E-value=1.2e+02 Score=32.28 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=13.5
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
+.....+.|+.-|+..++..|+...-|...|
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333
No 227
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.61 E-value=1.1e+02 Score=36.38 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=26.4
Q ss_pred cccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863 112 THRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSE 150 (790)
Q Consensus 112 ~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlE 150 (790)
+.+.|..-+.-+..||+.-.+.|+.||+.+-.|..++-.
T Consensus 324 K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 324 KSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 555666666666777777777777777777776665543
No 228
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=73.51 E-value=15 Score=38.93 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=51.7
Q ss_pred ccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 115 RQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 115 ~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
.+..+..|.+.+.-.+...++.|+..+.+|..-|.+-+.-+.+.++|++|..-..||+.++.++..|..
T Consensus 122 ~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 122 SRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred eeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999988766654443333888888887777777766666555543
No 229
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.96 E-value=2.6 Score=50.89 Aligned_cols=77 Identities=29% Similarity=0.258 Sum_probs=0.0
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh--------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK--------VLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~--------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r 187 (790)
+.++...|..|+.....|.++--.++.++.+. .+.+. +.+++..+......+..|.+++..+..|..-
T Consensus 338 Pe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~ 417 (722)
T PF05557_consen 338 PEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDY 417 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443 11111 4444444444444555566666666666666
Q ss_pred HHHHHHHHH
Q 003863 188 LSEQLAALS 196 (790)
Q Consensus 188 Lq~qv~e~~ 196 (790)
|.+++..|.
T Consensus 418 LR~~L~syd 426 (722)
T PF05557_consen 418 LRAQLKSYD 426 (722)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 666666654
No 230
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.93 E-value=88 Score=36.60 Aligned_cols=57 Identities=30% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhh
Q 003863 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~ 289 (790)
=+.|||+....||+.+-+++.--- ..++.-+..+..|...||..|-.|..|=+.+++
T Consensus 375 Lieelrkelehlr~~kl~~a~p~r-----------grsSaRe~eleqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 375 LIEELRKELEHLRRRKLVLANPVR-----------GRSSAREIELEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-----------CchhHHHHHHHHHHHHhccccchhhhhhhhhhh
Confidence 367888888888887766652110 011222334456666666666555555554433
No 231
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=72.79 E-value=18 Score=39.02 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=77.3
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----------------------hhhhhc----ccChhhHHHHH
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN----------------------QLTSLA----KASESDIISKI 266 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~----------------------~~~~~~----~~~Es~~va~~ 266 (790)
++.+..|+.++.+++..|..|+.+...+-.-.+.... +++.-+ ...++.|+.=+
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIV 84 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIV 84 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHH
Confidence 4667888888889999999888877666533222111 000100 12455688888
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhcc
Q 003863 267 KAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSC 316 (790)
Q Consensus 267 ~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~~ 316 (790)
...-+.+|..|..|..++..+.......-.|+-.||-+|..| ||.-.|.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL-YEKiRyl 133 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL-YEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 899999999999999999999999999999999999999888 8887773
No 232
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.13 E-value=54 Score=34.72 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 126 ELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
.++.+...++....-+...+.+..++ .++.. +..|+++++--.+..+.|...|.+++.+..+|+.++.+......
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666 22222 56666666666666666666666666666666666655554444
No 233
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=72.00 E-value=3.6 Score=38.58 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=26.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc------ChhhHHHHHHHHHHHHh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA------SESDIISKIKAEALVLR 274 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~------~Es~~va~~~eE~~~Lr 274 (790)
.-|..|..++..|.+.|.+|+.++.+|..+|..++.....+.+. +..++++.+.+++..+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~ 91 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEII 91 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56788888899999999999999999998888887544443332 22334444455444333
No 234
>PF14992 TMCO5: TMCO5 family
Probab=71.73 E-value=43 Score=36.99 Aligned_cols=146 Identities=19% Similarity=0.249 Sum_probs=78.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhh
Q 003863 160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRN 239 (790)
Q Consensus 160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ekre 239 (790)
|++.++.-+....-|-++|..-|...++|..+++....+....++.-..-.+-+..+++||.|-.-|.+.|+-|-+--.+
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQE 88 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhh
Confidence 44444444444455667788888888888888887776555432211111223567888888888888888777444445
Q ss_pred hhhhhhhhhhh-------hhhhcccChhh-HHHHHHHHHHHHhhhchhH---HHHHHHHhhhhhchHHHHH-HHHHhhHH
Q 003863 240 LACKFSSMENQ-------LTSLAKASESD-IISKIKAEALVLRHTNEDL---SKQVEGLQMSRLNEVEELA-YLRWVNSC 307 (790)
Q Consensus 240 L~~KLd~ae~~-------~~~~~~~~Es~-~va~~~eE~~~Lr~~NE~L---~~QlE~f~~dR~~dvEELv-~LR~~Nac 307 (790)
|-.+++--+.. ++.- ..+++ .+..+.+++-.+...-+.+ -.++..+..|-+..+.+|- -||-+..|
T Consensus 89 lq~k~~e~~~~~~~e~~~~~~~--lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~e 166 (280)
T PF14992_consen 89 LQRKQDEQETNVQCEDPQLSQS--LQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEE 166 (280)
T ss_pred hhhhhccccCCCCCCccchhcc--cHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554422211 1111 11222 3334444444444444444 2344455666666666665 33444334
No 235
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.55 E-value=1.2e+02 Score=32.47 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=20.9
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
..+++.+.=+.|||..+ +..+...-.+-|..|+..+
T Consensus 127 ~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL 162 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLL 162 (264)
T ss_pred HHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHH
Confidence 55555555666666664 5555655566666665443
No 236
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.46 E-value=81 Score=37.99 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhh-h------hchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 003863 134 LQESKEREFKLQAELSEW-K------RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (790)
Q Consensus 134 V~eLqeRE~kLE~eLlEy-K------EQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~ 197 (790)
+..|..+-.+++.+|.+. + ..+.+.+|+..+..-..+++.++..+..++.+.+.+..++..+..
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555 1 112266666666666666666666666666666666666555443
No 237
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=71.39 E-value=2.7 Score=55.29 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=4.2
Q ss_pred HhhccccC
Q 003863 532 HSLMKRDS 539 (790)
Q Consensus 532 rsL~~r~~ 539 (790)
+.|..|.+
T Consensus 1501 ~tLhdR~G 1508 (1806)
T PRK14849 1501 HRLHDRLG 1508 (1806)
T ss_pred hhHHHhcC
Confidence 45666643
No 238
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.37 E-value=14 Score=44.29 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=10.0
Q ss_pred CCCCCcccccccccc
Q 003863 38 KPRSSWGLKGFTVDK 52 (790)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (790)
|+..|||-.=||.+.
T Consensus 306 KiAasf~A~ly~P~~ 320 (652)
T COG2433 306 KIAASFNAVLYTPDR 320 (652)
T ss_pred HHHHHcCCcccCCcc
Confidence 677788866666554
No 239
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=70.97 E-value=5 Score=39.53 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=35.3
Q ss_pred hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 152 KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
+..|. +.+||.++..+..||..|+.++..+...|.+|+..
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566 88999999999999999999999999999998764
No 240
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=70.66 E-value=1.4 Score=47.50 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=2.9
Q ss_pred hhcCCcccc
Q 003863 362 FKKWPIASE 370 (790)
Q Consensus 362 LKkW~~~ke 370 (790)
.++|..|+.
T Consensus 66 ~~~WkvGd~ 74 (264)
T PF06003_consen 66 NKKWKVGDK 74 (264)
T ss_dssp TT---TT-E
T ss_pred ccCCCCCCE
Confidence 567866643
No 241
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.65 E-value=90 Score=35.51 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=43.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~ 288 (790)
.+.+-.-|.++.+...++.++.......++.- -+.+|+..-+.+|++=+..||.+.-.+..+|-+++
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emeer------g~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEER------GSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 34444455555555555555555555444432 34567777788999999999988888888776654
No 242
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=70.45 E-value=2.8e+02 Score=36.75 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863 266 IKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (790)
Q Consensus 266 ~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv 299 (790)
+.++...|-.++.++.-+..+++..-...-.||.
T Consensus 1046 L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1046 LEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555555555544444444444
No 243
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=70.24 E-value=2.3e+02 Score=33.37 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHH
Q 003863 224 VELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVE 296 (790)
Q Consensus 224 ~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvE 296 (790)
.-+.+-..-||-|---|...|..||.++ .+-.+...+|-.-.|++|+.|.+.|..--.-|+...-
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~--------~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr 313 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSY--------QEKLMQYRAEEVDHREENERLQRKLINELERREALCR 313 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555433 1123344555555677777776666655555544333
No 244
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=70.15 E-value=9.6 Score=40.15 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=5.2
Q ss_pred hhhcccCCCCCC
Q 003863 464 VEKRVLRVPNPP 475 (790)
Q Consensus 464 Vekra~rvP~PP 475 (790)
|.+-+...++|-
T Consensus 135 Vkk~p~~~ss~~ 146 (205)
T PF12238_consen 135 VKKKPAQPSSPT 146 (205)
T ss_pred hhhcccCCCCCC
Confidence 444444444443
No 245
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=68.98 E-value=40 Score=41.46 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhh
Q 003863 717 IKLSSVKLAKKYMRRV---AMELQS 738 (790)
Q Consensus 717 iK~asv~LA~~ymkRv---~~El~~ 738 (790)
.-.+|++---+|+||+ -++|+-
T Consensus 722 FHr~Sl~yGImcLkrlnYDrk~Le~ 746 (916)
T KOG0249|consen 722 FHRTSLQYGIMCLKRLNYDRKELER 746 (916)
T ss_pred HHHHHHHhhhhhhhhhcccHHHHHH
Confidence 3455666666777777 345543
No 246
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.86 E-value=3.2e+02 Score=34.48 Aligned_cols=8 Identities=38% Similarity=0.767 Sum_probs=4.5
Q ss_pred CCCchhhh
Q 003863 767 GGFDAETM 774 (790)
Q Consensus 767 GG~D~~t~ 774 (790)
|.+|.++.
T Consensus 852 ~~LD~e~l 859 (908)
T COG0419 852 GTLDEERL 859 (908)
T ss_pred CCCCHHHH
Confidence 55676643
No 247
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.54 E-value=1.9e+02 Score=31.87 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+.+|..|..-+..+|..=..|..++.+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~ 64 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEI 64 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444444444444444433
No 248
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.47 E-value=87 Score=33.59 Aligned_cols=17 Identities=12% Similarity=0.050 Sum_probs=8.1
Q ss_pred cchHhHHHHHHHHHHHH
Q 003863 214 SSSQNLEMEVVELRRLN 230 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~N 230 (790)
+.+..||..+..++...
T Consensus 60 ~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 60 QDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555554444433
No 249
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=68.44 E-value=7.5 Score=40.41 Aligned_cols=14 Identities=64% Similarity=1.265 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCC
Q 003863 503 PPPPPPAPKFSGKS 516 (790)
Q Consensus 503 pPPPPPPP~~l~Rs 516 (790)
||||||-|.-+.++
T Consensus 189 ~pppp~~p~~~t~s 202 (225)
T KOG3397|consen 189 PPPPPMAPKMVTRS 202 (225)
T ss_pred cccCCCCccceecC
Confidence 33444444444443
No 250
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.30 E-value=52 Score=29.35 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHH
Q 003863 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq 189 (790)
.+|+..+...-..|..|..+|.-|+.++..|.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444455555555555555544443
No 251
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=68.13 E-value=2.4e+02 Score=32.90 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=33.3
Q ss_pred hcccccCCCCCCCCCC------ccccccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 93 IGDLACSMNPAQVHPN------SYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAEL 148 (790)
Q Consensus 93 ~~dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eL 148 (790)
+++|+|-++. ++|-. +.......+.++..+..||..|+..+.-..+.-..++.-+
T Consensus 261 Le~~~~~~~~-~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~ 321 (593)
T KOG4807|consen 261 LEKLPLRENK-RVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSAL 321 (593)
T ss_pred HHhhhhhhcC-CCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhH
Confidence 8899998765 33311 1112222345667778899999888876665555555433
No 252
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.91 E-value=3.1e+02 Score=34.04 Aligned_cols=65 Identities=31% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhh----hHHHHHHHHhhhHHHhhhHHHHH
Q 003863 128 DSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKI----ENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~----Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
..|+..=..++.+|..|+.++++. ++.-. +.+|-+.+..+.+ .+..++..++.++.+-.-+...+
T Consensus 108 ~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~ 181 (716)
T KOG4593|consen 108 TRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRA 181 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456667777777777776 11112 4555555555555 44455555566665554444333
No 253
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.69 E-value=70 Score=34.30 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=19.8
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
++...+++.+...|+......+.++..|..++..++..+
T Consensus 53 e~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 53 EQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEI 91 (246)
T ss_dssp HHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888777555
No 254
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=67.53 E-value=17 Score=39.05 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=56.5
Q ss_pred HHhhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhh-------cCCCCC--cc-hh-hhHHhhhhhhee-
Q 003863 694 LMRNCREFQIPTAWMLDDGIISKIKLSSVKLAKKYMRRVAMELQSK-------AGVEKD--PA-MD-YMLLQGVRFAFR- 761 (790)
Q Consensus 694 a~~ryk~~~Ip~~wmlD~gii~kiK~asv~LA~~ymkRv~~El~~~-------~~~~~e--~~-~~-~lL~qgvrFAfR- 761 (790)
...|+...||..+=|--..-+++=|+-.++---.|..++..|.+.. +|.+.- .. .+ +.+.-.+.--=|
T Consensus 95 dl~Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~Ri 174 (281)
T KOG3997|consen 95 DLQRCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRI 174 (281)
T ss_pred HHHHHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhh
Confidence 3456777777766655556677788888877778889998887653 122111 10 11 122222222222
Q ss_pred ------ecccCCCCchhhhHHHHHHHH
Q 003863 762 ------IHQFAGGFDAETMHAFEELRN 782 (790)
Q Consensus 762 ------vhqFAGG~D~~t~~afeelr~ 782 (790)
-|+||+|+|=+|-++|+++=+
T Consensus 175 gVClDTCH~FaaGyDI~Tee~y~evmk 201 (281)
T KOG3997|consen 175 GVCLDTCHTFAAGYDIRTEEAYEEVMK 201 (281)
T ss_pred eeeHhhhhhhccccccchHHHHHHHHH
Confidence 399999999999999998744
No 255
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.95 E-value=2.1e+02 Score=31.69 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=28.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~ 254 (790)
+.|++||.---.|.|+-..-.+-..++-.||++|=.+++-|
T Consensus 112 kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfL 152 (333)
T KOG1853|consen 112 KYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFL 152 (333)
T ss_pred HHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 55666666666666766666777778888888886555443
No 256
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=66.18 E-value=25 Score=33.21 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-------------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-------------VLELERELEAKKIENDEIVRRVGMLEDEKT 186 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-------------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~ 186 (790)
+.|-+-||..|-+|.+....|..||..| .+.+. -..||-.|+....||..|..+|--||-||.
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYENR 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 6789999999999999999999999999 23321 257888899888899999999999999986
Q ss_pred h
Q 003863 187 S 187 (790)
Q Consensus 187 r 187 (790)
-
T Consensus 94 v 94 (96)
T PF11365_consen 94 V 94 (96)
T ss_pred c
Confidence 3
No 257
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=66.09 E-value=1.4e+02 Score=35.41 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
.-|++|+...++-+.|..++..+.+.--.||+
T Consensus 401 ~tqk~LqEsr~eKetLqlelkK~k~nyv~LQE 432 (527)
T PF15066_consen 401 NTQKHLQESRNEKETLQLELKKIKANYVHLQE 432 (527)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444444444444444444444443
No 258
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.68 E-value=1.3e+02 Score=37.69 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----------Hhhh------hhhhcccccchHhHHHHHHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER----------KNDN------KNAINMGSSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q----------~ee~------~~~~~e~e~~~~~LE~Ev~ELRr~Nke 232 (790)
+|+.-|++++...--.+-.+++.|+++..+.+. ++|- .++-.+.++.-.+||..+.|+.....+
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~ 103 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAE 103 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666666666666554442 1111 111122234444888888888887777
Q ss_pred HHHHHhhhhhhhhhhh
Q 003863 233 LQMEKRNLACKFSSME 248 (790)
Q Consensus 233 LQ~EkreL~~KLd~ae 248 (790)
+--|+..|..-|..-+
T Consensus 104 ~~~e~~~l~~~l~~~~ 119 (769)
T PF05911_consen 104 SAAENSALSKALQEKE 119 (769)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 7777777766555433
No 259
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.56 E-value=24 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=20.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
..+..|+..+..+....+.|..+...+..++...+..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554433
No 260
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=65.45 E-value=86 Score=34.56 Aligned_cols=20 Identities=30% Similarity=0.322 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003863 128 DSLRSLLQESKEREFKLQAE 147 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~e 147 (790)
..|+.....-+.||.-|=++
T Consensus 118 ~~lkqQ~~~a~RrE~ilv~r 137 (330)
T KOG2991|consen 118 EKLKQQQQEAARRENILVMR 137 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555443
No 261
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.37 E-value=1.9e+02 Score=30.54 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=22.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHh
Q 003863 124 FLELDSLRSLL----QESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVG 179 (790)
Q Consensus 124 ~~EI~~LR~~V----~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~ 179 (790)
..+|+.|+... ...+.+..+|....... +.+|+.+|-....++..|+.++.
T Consensus 17 ~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q-----~~~Lq~qLlq~~k~~~~l~~eLq 71 (206)
T PF14988_consen 17 EKKIEKLWKQYIQQLEEIQRERQELVSRYAKQ-----TSELQDQLLQKEKEQAKLQQELQ 71 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666553 33444444444332111 34444444444444444444443
No 262
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.07 E-value=1.4e+02 Score=29.12 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=51.7
Q ss_pred CCCCCCCccccccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHh
Q 003863 102 PAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVG 179 (790)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~ 179 (790)
+|+-.+..|+.. .....+...=|..+..+|..- +|.......|..- +..+. +.-|++.+..-..++..+.+++.
T Consensus 15 G~~~~~~~~~~~---~~~~~~~~~vin~i~~Ll~~~-~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 15 GYPSDGLLFDSA---EESEDNDVRVINCIYDLLQQR-DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred CCCCCCccCccc---ccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444321 223455667777777777433 3333333334333 44444 55566666655666666666666
Q ss_pred hhHHHhhhHHHHHHHHHHHHH
Q 003863 180 MLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 180 sLeaE~~rLq~qv~e~~~~~~ 200 (790)
+++++...|+.++.......+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665544444
No 263
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=65.04 E-value=3.4 Score=41.40 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=6.9
Q ss_pred cchhHHHHHHhhcc
Q 003863 523 RAPQVVEFYHSLMK 536 (790)
Q Consensus 523 RsPevvelYrsL~~ 536 (790)
-.+.+..+|..|.+
T Consensus 40 ~~~~i~~~~~~L~~ 53 (157)
T PF07304_consen 40 DEQPIEEVLRELQR 53 (157)
T ss_dssp ----HHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 34556677777764
No 264
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=65.00 E-value=2.1 Score=48.45 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=0.0
Q ss_pred ccchhh
Q 003863 618 LVDERA 623 (790)
Q Consensus 618 L~DEra 623 (790)
|++|..
T Consensus 149 LSEEpv 154 (386)
T PF01698_consen 149 LSEEPV 154 (386)
T ss_dssp ------
T ss_pred cccccc
Confidence 556654
No 265
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=64.81 E-value=2e+02 Score=36.44 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH-HHHHHHH----Hhhhhhhhccc--ccchHhHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA-LSVILER----KNDNKNAINMG--SSSSQNLEMEVVELRRL 229 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e-~~~~~~q----~ee~~~~~~e~--e~~~~~LE~Ev~ELRr~ 229 (790)
|.||++.|...+-++..+++-=..-++..+.|-.++.+ +.+..+| ++.++++..+. ..-.+++|.+...+|-.
T Consensus 931 i~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrse 1010 (1424)
T KOG4572|consen 931 IEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSE 1010 (1424)
T ss_pred HHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhh
Confidence 66666766666666666666555555555555544432 2222222 23344443222 14456666666666665
Q ss_pred HHHHHHHHhhhhhhhhhhhh
Q 003863 230 NKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 230 NkeLQ~EkreL~~KLd~ae~ 249 (790)
|.++-.++.......+..++
T Consensus 1011 lEe~kKe~eaiineiee~ea 1030 (1424)
T KOG4572|consen 1011 LEEKKKELEAIINEIEELEA 1030 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444443
No 266
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=64.64 E-value=7.6 Score=43.80 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=6.1
Q ss_pred HHHHhhhcccch
Q 003863 590 IREVNNAVYQNI 601 (790)
Q Consensus 590 ~~eI~~~~~~dm 601 (790)
...|..+..-|+
T Consensus 378 srAvsdASaGDy 389 (498)
T KOG4849|consen 378 SRAVSDASAGDY 389 (498)
T ss_pred HHHhcccccccc
Confidence 455666654443
No 267
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.34 E-value=1.2e+02 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHHhhhHHHhhhHHHHHHH
Q 003863 173 EIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 173 ~L~~kI~sLeaE~~rLq~qv~e 194 (790)
.+...|+.|+.+...++.++++
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555543
No 268
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.71 E-value=1.7e+02 Score=34.25 Aligned_cols=29 Identities=31% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 219 LEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 219 LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
=|.=|.-|=+....|+.|++-|.+|||.-
T Consensus 199 qEalvN~LwKrmdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34445566777888999999999999753
No 269
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.59 E-value=3.2e+02 Score=33.95 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhh-----------hcccccchHhHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA-----------INMGSSSSQNLEMEVVE 225 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~-----------~~e~e~~~~~LE~Ev~E 225 (790)
+.-|+.+.+..-.++..+..++..|++.-++|.+.+.+.... ++.-.+| ...+-..-+++-.|+..
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~---Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~ 643 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK---QEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 444444444444566666666777766666666644333222 1111111 11222344555556666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003863 226 LRRLNKELQMEKRNLACKFSSMENQLT 252 (790)
Q Consensus 226 LRr~NkeLQ~EkreL~~KLd~ae~~~~ 252 (790)
|+...+.|+.-..++..|++.-+.++.
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666665444443
No 270
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=63.58 E-value=1.8e+02 Score=34.54 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc-ccccCccc
Q 003863 280 LSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS-CSTTNSEK 323 (790)
Q Consensus 280 L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~-~sa~dl~k 323 (790)
...+++.-...++.+++-|.+ ||-|+.+. +||+||-|
T Consensus 447 qclEmdk~LskKeeeverLQ~-------lkgelEkat~SALdlLk 484 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQ-------LKGELEKATTSALDLLK 484 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334444444445544444444 44555555 36666554
No 271
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.84 E-value=1.5e+02 Score=31.78 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=6.4
Q ss_pred cccccCCCcccc
Q 003863 413 PNKRRQSDGFMC 424 (790)
Q Consensus 413 ~skR~~~D~~~i 424 (790)
..+|||+=+=.|
T Consensus 203 qIHRNAPiCPlC 214 (230)
T PF10146_consen 203 QIHRNAPICPLC 214 (230)
T ss_pred HHhcCCCCCccc
Confidence 356776654333
No 272
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.30 E-value=12 Score=44.44 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=18.4
Q ss_pred hhhhHhhhccchhhHHHHHHHhhhhHHHHHHHHH
Q 003863 559 SSMIGEIENRSSHLLAIKADVATQGEFVNSLIRE 592 (790)
Q Consensus 559 ~~mi~Ei~nRS~~l~aIk~dv~~~~~~I~~L~~e 592 (790)
..++.+|+ ....+|..+|..+..-+..|...
T Consensus 461 ~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~ 491 (585)
T PRK14950 461 GDVLEQLE---AIWKQILRDVPPRSPAVQALLSS 491 (585)
T ss_pred chhHHHHH---HHHHHHHHHHhhcCHHHHHHHhC
Confidence 35577776 33456777787766654444433
No 273
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.83 E-value=44 Score=39.07 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhh--chh------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH-HHHHHHHHHH
Q 003863 136 ESKEREFKLQAELSEWKR--NPK------VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE-QLAALSVILE 200 (790)
Q Consensus 136 eLqeRE~kLE~eLlEyKE--QE~------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~-qv~e~~~~~~ 200 (790)
.|+.-+..++..+.+.++ |+. ..-+++.|..-++.++.+..+...++++++.|.+ |.+-.-++.+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555566665555522 222 2234444444555666666667777777777664 3333334444
No 274
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.41 E-value=55 Score=36.29 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----hh-HHH----HHHHHHHhhh--hHHHHHHHHhhhHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKRN-----PK-VLE----LERELEAKKI--ENDEIVRRVGMLED 183 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQ-----E~-I~E----Lq~qL~~k~~--Ei~~L~~kI~sLea 183 (790)
++-|.+||..+++.+.|=..=+.|+.++|-| |- |.| .+.||.+|.+ ||.-|++-|..+.+
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888887766655544444444444222 22 221 3344444433 66666655555443
No 275
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=61.34 E-value=9.6 Score=46.57 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=6.7
Q ss_pred ccchhHHHHhhc
Q 003863 353 GRRLSFIKKFKK 364 (790)
Q Consensus 353 sKk~~li~KLKk 364 (790)
.=|.-|+..|+|
T Consensus 850 ~FKTEf~t~L~k 861 (1106)
T KOG0162|consen 850 PFKTEFITLLKK 861 (1106)
T ss_pred hhHHHHHHHHHH
Confidence 345556666654
No 276
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.92 E-value=31 Score=30.47 Aligned_cols=62 Identities=31% Similarity=0.334 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhH--HHHHHHHHHHHhhhchhHHHHHHHH
Q 003863 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDI--ISKIKAEALVLRHTNEDLSKQVEGL 287 (790)
Q Consensus 219 LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~--va~~~eE~~~Lr~~NE~L~~QlE~f 287 (790)
||.++..||. .+.-+..|++..++-...|..--++.+ +..+-+++..|+.+++.|.++++..
T Consensus 3 Lea~~~~Lr~-------rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRN-------RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554444 444445555555544444433222111 2234567777777777777775543
No 277
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.83 E-value=77 Score=29.74 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh------------hhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN------------KNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~------------~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
.+...+..++..+......|..++.++..+.+.=+.. .......+..+.+|+..+..|....+.|+.+
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~ 89 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQ 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555565555555521000 0000111244455555555555555555555
Q ss_pred Hhhhhhhhhhhhhhh
Q 003863 237 KRNLACKFSSMENQL 251 (790)
Q Consensus 237 kreL~~KLd~ae~~~ 251 (790)
...|..++...|..+
T Consensus 90 ~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 90 EERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 278
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.63 E-value=13 Score=42.13 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=6.3
Q ss_pred hhhhcccCCCCCC
Q 003863 463 EVEKRVLRVPNPP 475 (790)
Q Consensus 463 ~Vekra~rvP~PP 475 (790)
-|.|-++++++|-
T Consensus 386 vvskmaq~l~~~~ 398 (488)
T KOG3895|consen 386 VVSKMAQLLTRPI 398 (488)
T ss_pred HHHHhhhccCCCC
Confidence 3445555555443
No 279
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.59 E-value=68 Score=29.72 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=17.3
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
+.++..|+.++..|....+.|+.+..++..+|.
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555443
No 280
>PF13514 AAA_27: AAA domain
Probab=60.40 E-value=4.1e+02 Score=34.33 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=22.8
Q ss_pred hHhhhccchhhHHHHHHHhhhhHHHHHHHHHHhh
Q 003863 562 IGEIENRSSHLLAIKADVATQGEFVNSLIREVNN 595 (790)
Q Consensus 562 i~Ei~nRS~~l~aIk~dv~~~~~~I~~L~~eI~~ 595 (790)
+.++..-..-+.+|+.++..+..-+..|+..+..
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3444444455666788888888777777777655
No 281
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.27 E-value=3e+02 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
|..+|..|--.+.+|++.+..|+.+-.++
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL 690 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEEL 690 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444433
No 282
>PLN02939 transferase, transferring glycosyl groups
Probab=60.09 E-value=2.6e+02 Score=35.95 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=20.3
Q ss_pred cccccccccccchhhhccCCCcc----ccCccccccccccc
Q 003863 45 LKGFTVDKKTKSQTTATSKKLPL----TTNSSDVTNQKNSI 81 (790)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vk~~n~~ 81 (790)
-.||++-+|.|.....+.+..|. -.|+.|+...=|..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (977)
T PLN02939 39 RRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTS 79 (977)
T ss_pred CCCchhhhhhhhccCCCCcccccccccccCccccccccccc
Confidence 46788888776665554444432 23445554444443
No 283
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.92 E-value=4.5e+02 Score=34.94 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=15.6
Q ss_pred hhhhhhhHhhhccchhhHHHHHHH
Q 003863 556 NVRSSMIGEIENRSSHLLAIKADV 579 (790)
Q Consensus 556 ~~r~~mi~Ei~nRS~~l~aIk~dv 579 (790)
-+|...|.||+.+-+-+.+--+..
T Consensus 738 ~~R~~ri~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667999998876665533333
No 284
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=59.55 E-value=13 Score=44.07 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=53.8
Q ss_pred chhhhhhhhHhhhccchhhHHHHHHHhhhhHHHHHHHHHHhhhcccchHHHHHHHHhHHHHhhhccchhhhhhhc--C--
Q 003863 554 VANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHF--D-- 629 (790)
Q Consensus 554 ~a~~r~~mi~Ei~nRS~~l~aIk~dv~~~~~~I~~L~~eI~~~~~~dm~dlv~Fv~wlD~eL~~L~DEraVL~~F--~-- 629 (790)
.++.|-.+|.=|.-+..=|-.---++-+....|.-|-.+++++. -+ +-|-..|.-+++...|+--| |
T Consensus 302 tpd~RcRvvNALl~g~~GL~L~p~ec~sW~~avaaL~~RthG~~-----pl----H~L~~vL~~ia~~EGv~~A~~lGmm 372 (582)
T PF03276_consen 302 TPDLRCRVVNALLGGHLGLALTPNECGSWASAVAALYQRTHGSY-----PL----HQLADVLRGIANQEGVATAYNLGMM 372 (582)
T ss_pred CccHHHHHHHHHhcCCCccccCccccccHHHHHHHHHHHhcccc-----hH----HHHHHHHHHHhhhhhHHHHHHhhce
Confidence 34566666666666555444444455555555555555555554 11 23445677777777777666 3
Q ss_pred CCcchhHHHHHHHhhhhhhhhhHHhhhcCCCC-CCCchHHHHHHHHHHHHH
Q 003863 630 WPEKKADTLREAAFGYRDLKKLESEVSYYKDD-PRVPCDLALKKMVSLSEK 679 (790)
Q Consensus 630 ~Pe~K~dalReAa~ly~~L~~l~~e~s~~kdd-p~~pc~~al~Km~~l~dK 679 (790)
|--.-++- -|.+- |=+|--+++.-|++.||-
T Consensus 373 ft~~n~~L-------------------vwGIiR~lLPGQAvVt~~Q~rLDq 404 (582)
T PF03276_consen 373 FTNQNFDL-------------------VWGIIRPLLPGQAVVTAMQQRLDQ 404 (582)
T ss_pred eecCCcch-------------------hhhhhhccCChHHHHHHHHHHhhc
Confidence 22211111 02222 556777777888887775
No 285
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.55 E-value=2.9e+02 Score=30.87 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhccc---ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~---e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
++.-+..++.|+-|+..|-+.+..+.+.+.+ .--++ +..|.-||..+.-.+.....|+.+..-+..-|+-+
T Consensus 55 ~e~ek~e~s~LkREnq~l~e~c~~lek~rqK------lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 55 VEEEKNEYSALKRENQSLMESCENLEKTRQK------LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH------hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666665555544444332 11122 35566666666666666666666666666666655
Q ss_pred hhh
Q 003863 248 ENQ 250 (790)
Q Consensus 248 e~~ 250 (790)
+.-
T Consensus 129 Q~~ 131 (307)
T PF10481_consen 129 QQA 131 (307)
T ss_pred HHh
Confidence 543
No 286
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=59.39 E-value=15 Score=42.40 Aligned_cols=9 Identities=22% Similarity=-0.097 Sum_probs=4.7
Q ss_pred HHhhhhhhc
Q 003863 307 CLRDELQNS 315 (790)
Q Consensus 307 cLR~EL~~~ 315 (790)
.+|-++..|
T Consensus 117 ~kr~~~sqY 125 (487)
T KOG4672|consen 117 DKRPEDSQY 125 (487)
T ss_pred hhchhhhhh
Confidence 355555555
No 287
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.29 E-value=5.1e+02 Score=33.63 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
+.+++..+..+..|+....-+-++|..+..++..+++.+-
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~ 369 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE 369 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 3344455555555666666666777777777666665543
No 288
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.29 E-value=1.6e+02 Score=27.66 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHH----hhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003863 179 GMLEDEKTSLSEQLAALSVILERK----NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (790)
Q Consensus 179 ~sLeaE~~rLq~qv~e~~~~~~q~----ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~ 254 (790)
..|+.....|++.+..+....+.. ..|.++-..-.......+.|+..|+..+..|+.+...+..+|......-..|
T Consensus 35 ~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL 114 (126)
T PF13863_consen 35 EELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFL 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555444444421 1122211111244556667777777777777777777777776665443333
No 289
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=59.07 E-value=23 Score=35.18 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=14.9
Q ss_pred CccccccchhHHHHHHhhc
Q 003863 517 TTGVVQRAPQVVEFYHSLM 535 (790)
Q Consensus 517 ~t~kv~RsPevvelYrsL~ 535 (790)
+...++-=|....+|.-|+
T Consensus 106 ~~~~~~~dP~y~kYfKMl~ 124 (148)
T PF10152_consen 106 GGVTVKDDPRYAKYFKMLK 124 (148)
T ss_pred ccccccCCccHHHHHHHHH
Confidence 3355667799999999987
No 290
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.02 E-value=75 Score=28.12 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq 189 (790)
++.+|..|++.+..+..+=...+.++..+ +|.+. ..++|..+-.++..|+.++..|+.|...+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~---~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDS---AERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777766666666555555 44433 224455566677777777777776655443
No 291
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=58.93 E-value=3.2e+02 Score=31.18 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhhhhchh-------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 128 DSLRSLLQESKE------REFKLQAELSEWKRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 128 ~~LR~~V~eLqe------RE~kLE~eLlEyKEQE~-------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
..|.++-++||. .|.-+++.-.|-+.-++ +.+.|..|.....+-+.|...=.-|-.+...|-+|...
T Consensus 76 sKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~ 155 (391)
T KOG1850|consen 76 SKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEE 155 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-------------------------Hhhhhhhhcccc-cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 195 LSVILER-------------------------KNDNKNAINMGS-SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 195 ~~~~~~q-------------------------~ee~~~~~~e~e-~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
......+ .+++..++.... ...--.-.-+.++++.--.|+.|+..-.-|++.-+
T Consensus 156 re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq 235 (391)
T KOG1850|consen 156 REKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQ 235 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH-HHhhH
Q 003863 249 NQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL-RWVNS 306 (790)
Q Consensus 249 ~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L-R~~Na 306 (790)
.-++.- +++.-+.+.|+. .+.+.+..++. |-|+|+ +|.|+
T Consensus 236 ~tl~KS-----NE~F~~fK~E~e-------kmtKk~kklEK------E~l~wr~K~e~a 276 (391)
T KOG1850|consen 236 TTLAKS-----NELFTKFKQEME-------KMTKKIKKLEK------ETLIWRTKWENA 276 (391)
T ss_pred HHHHHh-----HHHHHHHHHHHH-------HHHHHHHHHHH------HHHHHHHHHhhh
No 292
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.76 E-value=2.8e+02 Score=33.22 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhchhHHHHHHHHHHhhhhHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW--------KRNPKVLELERELEAKKIENDEIVRRV 178 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy--------KEQE~I~ELq~qL~~k~~Ei~~L~~kI 178 (790)
....+..|...|..+++.-..|..++.+. .|.+.+++|+++|..-......+...|
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i 367 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERI 367 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777666665 333337777777766665555555555
No 293
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=58.42 E-value=72 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
..-.+...|...+..+-.+..+++.+|.|.
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~ 39 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEI 39 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888889999999988887
No 294
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=58.33 E-value=15 Score=42.32 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=8.1
Q ss_pred hhhhcccCCCCCCCCCCC
Q 003863 463 EVEKRVLRVPNPPPRPSC 480 (790)
Q Consensus 463 ~Vekra~rvP~PPP~ps~ 480 (790)
.++.++.+.+.|+..|+.
T Consensus 143 ~~~~~~~~~~~p~~pp~~ 160 (409)
T KOG4590|consen 143 SIRPSPSSGSPPPSPPSA 160 (409)
T ss_pred ccccCCCCCCCCCCCccc
Confidence 444444444444444433
No 295
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.06 E-value=3.9e+02 Score=33.28 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
+.+|+.+++.-......|..+++...+.-+.|...+........
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666665666677777888887777777777776655544
No 296
>PRK11519 tyrosine kinase; Provisional
Probab=57.99 E-value=1e+02 Score=37.60 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELE 161 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq 161 (790)
..-++-|...+..++.+=...|..|.+||.+.-+..++
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~ 303 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLP 303 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 34566777777777777777777888885554433333
No 297
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=57.92 E-value=91 Score=34.35 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 260 SDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 260 s~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
+.++..++..+..++..-++|...|..|..+.
T Consensus 153 ~rv~~el~~K~~~~k~~~e~Ll~~LgeFLeeH 184 (268)
T PF11802_consen 153 SRVFQELKTKIEKIKEYKEKLLSFLGEFLEEH 184 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555544444445555444444333
No 298
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=57.43 E-value=10 Score=31.50 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.1
Q ss_pred ccchHhHHHHHHHHHHHHHHHHH
Q 003863 213 SSSSQNLEMEVVELRRLNKELQM 235 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~ 235 (790)
.-++-+||.||.-||+.|++|=+
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHHh
Confidence 36789999999999999999843
No 299
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=57.28 E-value=3.5 Score=48.30 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHH----HHHHHHHHHHH-------HHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh
Q 003863 122 DLFLELDSLRSLLQE----SKEREFKLQAE-------LSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (790)
Q Consensus 122 ~~~~EI~~LR~~V~e----LqeRE~kLE~e-------LlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r 187 (790)
.|++||..|+..++. |+|=|.+|..+ |++| ..+|- =..|++|-..|..+++.+--.+-.+|+|.++
T Consensus 373 ~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrr 451 (495)
T PF12004_consen 373 KYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRR 451 (495)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 478899888866644 33333333322 3333 22222 2233344444444555554444455544333
No 300
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=57.03 E-value=4.8e+02 Score=32.58 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-----------------cccChhhHHHHHHHHHHHHhhhchh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL-----------------AKASESDIISKIKAEALVLRHTNED 279 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~-----------------~~~~Es~~va~~~eE~~~Lr~~NE~ 279 (790)
..-+.|=.+|..+...|+.++.-|-.-++.-+-+..++ +..-|++...|.+.=.++-|+.-=.
T Consensus 238 ~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFa 317 (739)
T PF07111_consen 238 QAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFA 317 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 34567778899999999988887766655555555443 2224445555666666666666667
Q ss_pred HHHHHHHHhhhhhchHHHH
Q 003863 280 LSKQVEGLQMSRLNEVEEL 298 (790)
Q Consensus 280 L~~QlE~f~~dR~~dvEEL 298 (790)
|..|++.-...+.+.+.+|
T Consensus 318 LmVQLkaQeleh~~~~~qL 336 (739)
T PF07111_consen 318 LMVQLKAQELEHRDSVKQL 336 (739)
T ss_pred HHHHhhHHHHHhhhHHHHH
Confidence 7777775555555555543
No 301
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.96 E-value=2.5e+02 Score=32.36 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+..+|..|...+..++.+...++..+..+
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777665555
No 302
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.96 E-value=2.4e+02 Score=29.15 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcc-cccchHhHHHHHHHHHHHHHHHHHHH
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINM-GSSSSQNLEMEVVELRRLNKELQMEK 237 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e-~e~~~~~LE~Ev~ELRr~NkeLQ~Ek 237 (790)
...|..+|..|+.+...|+.++.+...-.++- .++..+ .+...+....||.-|++.|..|-.+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~---ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL---EKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888777664433321 111111 12344677888888999998886654
No 303
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=56.87 E-value=1e+02 Score=37.57 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=26.2
Q ss_pred ccchhhhhhhcCCCcchhHHHHHHHhhhhhhhhhHHhhhcCCCCCCCchHHHHHHHHHHHHH
Q 003863 618 LVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679 (790)
Q Consensus 618 L~DEraVL~~F~~Pe~K~dalReAa~ly~~L~~l~~e~s~~kddp~~pc~~al~Km~~l~dK 679 (790)
|-.-.+.|+.++.|. +-.+|.| |..++..-+--|....+-..-|+.+|.+.
T Consensus 447 L~~AD~~La~~~~P~--l~~lR~A---------la~Di~~L~~~~~~D~~gl~l~L~~l~~~ 497 (656)
T PRK06975 447 LQNADARLATSDSPQ--AVAVRKA---------IAQDIERLKAAPSADLTGLAIKLDDAIAK 497 (656)
T ss_pred HHHHHHHHHhcCCcc--hHHHHHH---------HHHHHHHHhcCCcCCHHHHHHHHHHHHHH
Confidence 444445677777664 4445554 23334444445555555555555554433
No 304
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.64 E-value=1.2e+02 Score=27.46 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~ 197 (790)
.|+.-++-.-..|.+|...|.-|.++|+.|+.++.+...
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 344444444557888888888888888888777664433
No 305
>PRK11281 hypothetical protein; Provisional
Probab=56.38 E-value=5.1e+02 Score=34.00 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh-------HHHHHHHHHHhh--------hhHHHHHHHHhhh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK-------VLELERELEAKK--------IENDEIVRRVGML 181 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-----KEQE~-------I~ELq~qL~~k~--------~Ei~~L~~kI~sL 181 (790)
.+++.|..+...++..|+.-..++.+|... +-|.. +.|++++|..-. ++...|..+...|
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l 204 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL 204 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 356666666666666666555555556555 22222 344445444311 2355555555666
Q ss_pred HHHhhhHHHHHHHHHHHHH----HHhhh-----------hhhhccc-ccchHhHHHHHHHHHHH-----------HHHHH
Q 003863 182 EDEKTSLSEQLAALSVILE----RKNDN-----------KNAINMG-SSSSQNLEMEVVELRRL-----------NKELQ 234 (790)
Q Consensus 182 eaE~~rLq~qv~e~~~~~~----q~ee~-----------~~~~~e~-e~~~~~LE~Ev~ELRr~-----------NkeLQ 234 (790)
++++.-++.++........ |.+.. ......+ ++++++-|.-+.|.++. ..++.
T Consensus 205 ~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~ 284 (1113)
T PRK11281 205 NAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQEL 284 (1113)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHH
Confidence 6555554444432222111 11000 0000111 24444444444444321 22344
Q ss_pred HHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 235 MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 235 ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
..|++|...|...-.+++.+.. -...++..++.++..--.+.+|++.++..-
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~-----~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~ 336 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQ-----QNLRVKNWLDRLTQSERNIKEQISVLKGSL 336 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 5577777777776666655432 123557777777777777777877655443
No 306
>PRK11281 hypothetical protein; Provisional
Probab=56.19 E-value=6e+02 Score=33.41 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=17.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~ 249 (790)
...|+.|..-|...|.-++.+...-..+.+.++.
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~ 227 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQK 227 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4556666666665555555554444444444333
No 307
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.16 E-value=18 Score=41.18 Aligned_cols=9 Identities=33% Similarity=0.313 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 003863 129 SLRSLLQES 137 (790)
Q Consensus 129 ~LR~~V~eL 137 (790)
.+|.+|..|
T Consensus 173 d~rslvig~ 181 (488)
T KOG3895|consen 173 DYRSLVIGL 181 (488)
T ss_pred chHHHHHHH
Confidence 344444433
No 308
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.15 E-value=1.1e+02 Score=28.27 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
...++..|+..++.|......|+.++.|.
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888776
No 309
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=55.87 E-value=10 Score=39.43 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=5.6
Q ss_pred cccccccccCCCcc
Q 003863 409 EELMPNKRRQSDGF 422 (790)
Q Consensus 409 E~Lm~skR~~~D~~ 422 (790)
|++..-+|--|-||
T Consensus 87 EsVVV~k~~RG~GF 100 (225)
T KOG3397|consen 87 ESVVVKKDQRGLGF 100 (225)
T ss_pred EEEEEehhhccccH
Confidence 33443333334444
No 310
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.76 E-value=1.1e+02 Score=38.47 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=23.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
......|.+..+|.-..+.+--.-.+++.++.+-++++
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQA 885 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence 55566666666666666666666666666666666555
No 311
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=55.56 E-value=5e+02 Score=32.38 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHhh--hhchh-HHHHHHHHHHhh---hhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQA----ELSEW--KRNPK-VLELERELEAKK---IENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~----eLlEy--KEQE~-I~ELq~qL~~k~---~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
...|++.|...+..+.+.+..=-. .+.+- ++++. +.+|++.++.-. +|..-.-.-+.-+|+++.+|-.|+
T Consensus 398 a~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el 477 (698)
T KOG0978|consen 398 ARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQEL 477 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777766653222 22222 34444 888888877655 355555666677888888877777
Q ss_pred HHH
Q 003863 193 AAL 195 (790)
Q Consensus 193 ~e~ 195 (790)
.+-
T Consensus 478 ~ek 480 (698)
T KOG0978|consen 478 REK 480 (698)
T ss_pred HHH
Confidence 543
No 312
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=55.30 E-value=3.2e+02 Score=32.52 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=24.3
Q ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChh
Q 003863 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASES 260 (790)
Q Consensus 212 ~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es 260 (790)
++++-+.|+..-.+|....++|+....++..........+..++.+|.+
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3344444444444444444444444444444444444555566666644
No 313
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.07 E-value=18 Score=32.62 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=47.0
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhchh-HHHHHHHHHHhhhhHHHHHHHH
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW--KRNPK-VLELERELEAKKIENDEIVRRV 178 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy--KEQE~-I~ELq~qL~~k~~Ei~~L~~kI 178 (790)
-..++.|+..++..||..++..+.-=..|.+ +++ .||+. |.+|+.++..+..-+..|+.+|
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg--i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPG--IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677888999998888877766666666 444 88888 9999999999888888777654
No 314
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=55.06 E-value=17 Score=44.78 Aligned_cols=10 Identities=20% Similarity=-0.240 Sum_probs=5.4
Q ss_pred CCCccccccc
Q 003863 404 SNCRAEELMP 413 (790)
Q Consensus 404 ~~~~lE~Lm~ 413 (790)
+++|..-.|-
T Consensus 456 ~R~cAfI~M~ 465 (894)
T KOG0132|consen 456 PRGCAFIKMV 465 (894)
T ss_pred CCceeEEEEe
Confidence 4555555555
No 315
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.03 E-value=1.2e+02 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 225 ELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 225 ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
+|+.++..|+.++.....++..-++++
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 316
>PF13514 AAA_27: AAA domain
Probab=54.99 E-value=4.5e+02 Score=33.95 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=20.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
..+..++.+...++.....++.+...|..+++.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666666555544
No 317
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=92 Score=30.54 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=51.0
Q ss_pred HHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh-------------------hhhhcccccchHhHHHHH
Q 003863 163 ELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN-------------------KNAINMGSSSSQNLEMEV 223 (790)
Q Consensus 163 qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~-------------------~~~~~e~e~~~~~LE~Ev 223 (790)
+++...++..-|..+++.+-.+...++.++.+.-.+...-+.. .+...++++++..||.+|
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777777777777777777776666632110 001123346666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 224 VELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 224 ~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.-|++.-+.|+.+..+|..+|..+-
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666655543
No 318
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.78 E-value=3.2e+02 Score=32.15 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 132 SLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 132 ~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
++--++.+|=..|+.+|..+ |.| .++-.|+-+.-+|.+.++.++.-.|.+.++||++..+..
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~---s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQ---SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666665 444 445566777778888888888888888888888776553
No 319
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=54.43 E-value=20 Score=41.31 Aligned_cols=7 Identities=57% Similarity=0.829 Sum_probs=3.1
Q ss_pred HHHHhHH
Q 003863 606 AFVKWLD 612 (790)
Q Consensus 606 ~Fv~wlD 612 (790)
.|.+.++
T Consensus 478 ~FMkEM~ 484 (487)
T KOG4672|consen 478 AFMKEMD 484 (487)
T ss_pred HHHHHHh
Confidence 4444444
No 320
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.93 E-value=4.5e+02 Score=31.30 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=25.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhh
Q 003863 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRH 275 (790)
Q Consensus 215 ~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~ 275 (790)
.+.+++.....+++..+..-....++...++..+..+..+.+..+ .+..++++...++.
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~--~le~L~~el~~l~~ 360 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE--SLEALEEEVDKLEE 360 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHH
Confidence 344444444444443333333444555555555555544433221 23344444444443
No 321
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.90 E-value=17 Score=45.57 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=9.6
Q ss_pred ccchhHHHHhhcC
Q 003863 353 GRRLSFIKKFKKW 365 (790)
Q Consensus 353 sKk~~li~KLKkW 365 (790)
.||..++..++.=
T Consensus 839 ~kk~~l~eev~~~ 851 (1080)
T KOG0566|consen 839 QKKLRLFEEVKER 851 (1080)
T ss_pred HHHHHHHHHHHHH
Confidence 5777888887764
No 322
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.86 E-value=2.1e+02 Score=35.02 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAEL 148 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eL 148 (790)
++..++...+......+.+-..|+..+
T Consensus 241 ~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 241 ELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443
No 323
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.62 E-value=1.5e+02 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
-.++..|+..++.+......|+.++.|.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777666665
No 324
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=53.56 E-value=1.9e+02 Score=32.12 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH--------HHhhhhhhhcccccchHhHH----HHHHHHHHHH-------
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE--------RKNDNKNAINMGSSSSQNLE----MEVVELRRLN------- 230 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~--------q~ee~~~~~~e~e~~~~~LE----~Ev~ELRr~N------- 230 (790)
+-++|.-.|..|.....+|..|+.+..+-.. +++|-..+. ..|++|- --|+.||++.
T Consensus 102 ~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~----sqi~~lK~qq~Ps~~qlR~~llDPAinl 177 (330)
T KOG2991|consen 102 YTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECT----SQIQYLKQQQQPSVAQLRSTLLDPAINL 177 (330)
T ss_pred ccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhCcHHHHHHHHhhChHHHH
Confidence 5566777777777777777776655432111 122221111 1111111 1233444432
Q ss_pred --HHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHH
Q 003863 231 --KELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCL 308 (790)
Q Consensus 231 --keLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacL 308 (790)
.+|--+..+-..||+.++.-+++..=-+.|.-...+-+.++.|-++|+.|=.|.-....+.. .-||.-.+.-++-|
T Consensus 178 ~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~L--e~eLAmQKs~seEl 255 (330)
T KOG2991|consen 178 FFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAEL--EIELAMQKSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHH--HHHHHHHHhhHHHH
Confidence 12333334445566667766666555555555555567777777888877777765555443 34444334444333
No 325
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.52 E-value=6.9e+02 Score=33.35 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=14.1
Q ss_pred hhhcccccCCCCCccccCCCCCCCCC
Q 003863 12 KTLKFADQNQPPKSQNTKTNSSINPS 37 (790)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (790)
-.+|||-+.+-|. |+++++-+-.+
T Consensus 45 EcLKyatTG~lPp--nsk~~~FiHdp 68 (1294)
T KOG0962|consen 45 ECLKYATTGELPP--NSKGGSFIHDP 68 (1294)
T ss_pred HHHHHHhcCcCCC--CCcCCCCCCCc
Confidence 4578888777665 45554444433
No 326
>COG5293 Predicted ATPase [General function prediction only]
Probab=53.09 E-value=4.7e+02 Score=31.31 Aligned_cols=157 Identities=20% Similarity=0.157 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------hhchh--HHHHH--HHHHHhhhhHHHHH---HHHhhhHHHhhhHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW------KRNPK--VLELE--RELEAKKIENDEIV---RRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy------KEQE~--I~ELq--~qL~~k~~Ei~~L~---~kI~sLeaE~~rLq~q 191 (790)
.+|.-++.-++.|.-.. || .++++. +-.|. +.|++ +|+..+++.+..++ +.-+-++++-+.++++
T Consensus 193 ~~~~~~~dKi~~l~s~k-Kl-~e~~~~~~ig~L~slee~e~~e~~~~~~v~~k~~tln~f~~~a~~y~e~ee~vn~v~~~ 270 (591)
T COG5293 193 KCAAEYYDKIQELESKK-KL-AELLRKTWIGSLDSLEEIETTELRKQDEVNKKQATLNTFDFHAQDYAETEELVNTVDER 270 (591)
T ss_pred hHHHHHHHHHHHHHHHH-HH-HHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 46777777777775432 22 344442 22222 44444 45555555555554 5556777777777777
Q ss_pred HHHH--HHHHHH----------Hhhh---------------------hhhhcc---------cccchHhHHHHHHHHHHH
Q 003863 192 LAAL--SVILER----------KNDN---------------------KNAINM---------GSSSSQNLEMEVVELRRL 229 (790)
Q Consensus 192 v~e~--~~~~~q----------~ee~---------------------~~~~~e---------~e~~~~~LE~Ev~ELRr~ 229 (790)
+.+. -.+..| +++- .+++.| ++.+=.=|-.|++++++.
T Consensus 271 I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~d 350 (591)
T COG5293 271 IAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGD 350 (591)
T ss_pred HHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7772 222222 1111 122211 134445567899999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 230 NKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 230 NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
.+++..++++|..++...=+-+.. .+.-|. ..-+.+|+..+|.+=..|..+++-
T Consensus 351 Lk~~n~~~~~l~~~rae~l~~Lk~-~g~~e~--y~~l~ee~~~~~~elae~~~rie~ 404 (591)
T COG5293 351 LKEVNAELDDLGKRRAEGLAFLKN-RGVFEK--YQTLCEEIIALRGELAELEYRIEP 404 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCcHHH--HHHHHHHHHHHhhhHHHHHHhhhH
Confidence 999999999999988654222211 111221 122345555555444444444443
No 327
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.05 E-value=1.1e+02 Score=31.97 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
.+.++.++..+.++.+.+..+|..|+.....|+.+.+...
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666666666666654433
No 328
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.48 E-value=1.2e+02 Score=27.11 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 225 ELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 225 ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.||..+++++.+..+|..+++.++
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 329
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=52.43 E-value=2.6e+02 Score=33.70 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQA 146 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~ 146 (790)
++..|+.+||.-+--|+.....-+.
T Consensus 170 ~~~een~~lr~k~~llk~Et~~~~~ 194 (596)
T KOG4360|consen 170 PLEEENTQLRSKAMLLKTETLTYEE 194 (596)
T ss_pred ChHHHHHHHHHHHHHHHhhhcchhH
Confidence 3456666666666555555444443
No 330
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=52.28 E-value=1.9e+02 Score=31.24 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 261 DIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 261 ~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
++-..+..|+..+|.+|++....++...++..
T Consensus 113 e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~ 144 (230)
T PF03904_consen 113 ELKNIAQNEIKKVREENKSMLQEVKQSHEKYQ 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999988887555544
No 331
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.26 E-value=2e+02 Score=34.05 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=16.0
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
.+++++..|..++|..|+-|....--...||.
T Consensus 389 ~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 389 TKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555555555555544444433333
No 332
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.08 E-value=1.6e+02 Score=35.47 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH-hh----------hhhhh------cccccchHhH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK-ND----------NKNAI------NMGSSSSQNL 219 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~-ee----------~~~~~------~e~e~~~~~L 219 (790)
|--||+.|..+...+.-|+-..++|-+--.+++..++....+.+|+ |+ |-++. .+....++.|
T Consensus 347 v~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~l 426 (654)
T KOG4809|consen 347 VNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQL 426 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHH
Confidence 4444555555555555555555555555555555555555555543 22 11111 1223677788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 220 EMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 220 E~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
|.|+-+-|...+-.|-+-.+|..=|.
T Consensus 427 e~e~~~y~de~~kaqaevdrlLeilk 452 (654)
T KOG4809|consen 427 EKEASYYRDECGKAQAEVDRLLEILK 452 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777776666655554444333
No 333
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.48 E-value=75 Score=34.37 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 225 ELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 225 ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
-+|..|.+|+.|++.+...+. .++.|+..||..|-.|-+.+.-++....
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~-------------------~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTIS-------------------SLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 456666666666655443332 3456666666666666666666665554
No 334
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=51.12 E-value=6.2e+02 Score=33.02 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-------hhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-H
Q 003863 131 RSLLQESKEREFKLQAELSEWKRN-------PKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER-K 202 (790)
Q Consensus 131 R~~V~eLqeRE~kLE~eLlEyKEQ-------E~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q-~ 202 (790)
.-++++|=+.=.+|-.+|.-.+|. |...+.+.+.+..+..|+.|..+|..++.+-+.|++.......+... .
T Consensus 403 ~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~ 482 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566666667777777766332 22444555666777788999999999999988888887655544443 2
Q ss_pred hhhhhhhcccccchHhHHHHHHHHHHHHHHHH
Q 003863 203 NDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (790)
Q Consensus 203 ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ 234 (790)
++..+.+..++....+|+..-.|++.++..|-
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333345555555555555555555543
No 335
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.04 E-value=1.8e+02 Score=26.85 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
+..|+..++..-..|.+|..+|.-|.++|..|..++....
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666888999999888888888877665443
No 336
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.02 E-value=55 Score=38.53 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=26.9
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
-.+++|+.++.+|.+.|+.|..||..|..|.+....+|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45667777777777777777777777777776666555
No 337
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=50.89 E-value=27 Score=41.57 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=32.2
Q ss_pred HHhhhhhchHHHHHH-HHHhhHHHhhhhhh---cccccCcccCCCccccccccccccCCCCCCccccccccccchhHHHH
Q 003863 286 GLQMSRLNEVEELAY-LRWVNSCLRDELQN---SCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKK 361 (790)
Q Consensus 286 ~f~~dR~~dvEELv~-LR~~NacLR~EL~~---~~sa~dl~k~~sp~S~ek~~es~sS~~s~~~d~~~~s~sKk~~li~K 361 (790)
.|+.-|+.+-.|... |+=-.+.|+|=--. |++-.=--|++|-.|..+.. .|-+=.|+..+.|
T Consensus 131 fFnKkrEaek~eveNtlkNt~iLlkyYKa~~Kyy~gE~~PLKTlSe~SlqkEd--------------NylnlEkFrvlSr 196 (574)
T PF07462_consen 131 FFNKKREAEKKEVENTLKNTEILLKYYKARAKYYIGEPFPLKTLSEESLQKED--------------NYLNLEKFRVLSR 196 (574)
T ss_pred HHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcccccccHHHHhhhh--------------hhhhHHHHHHHHH
Confidence 677778877777663 23333443332111 12222223445544433321 3555677777777
Q ss_pred hh
Q 003863 362 FK 363 (790)
Q Consensus 362 LK 363 (790)
|-
T Consensus 197 lE 198 (574)
T PF07462_consen 197 LE 198 (574)
T ss_pred HH
Confidence 76
No 338
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.87 E-value=6.6e+02 Score=33.44 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=7.1
Q ss_pred cchhhhhhhhccccc
Q 003863 5 NASENRAKTLKFADQ 19 (790)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (790)
+++|.+.+|-+--+|
T Consensus 1444 ~aseA~~~Aq~~~~~ 1458 (1758)
T KOG0994|consen 1444 SASEAQQSAQRALEQ 1458 (1758)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344555555444444
No 339
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.75 E-value=1.8e+02 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.++..|+..++.+......|+.++.|+
T Consensus 14 ~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 14 AQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666777666665
No 340
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.58 E-value=34 Score=40.73 Aligned_cols=14 Identities=0% Similarity=0.038 Sum_probs=6.3
Q ss_pred hHHHHHHHHhhhhh
Q 003863 279 DLSKQVEGLQMSRL 292 (790)
Q Consensus 279 ~L~~QlE~f~~dR~ 292 (790)
.+...+..|.....
T Consensus 264 ~al~~l~~L~~~g~ 277 (585)
T PRK14950 264 AALRTLNAVAADGA 277 (585)
T ss_pred HHHHHHHHHHHcCC
Confidence 34444455544433
No 341
>PRK10869 recombination and repair protein; Provisional
Probab=50.33 E-value=5.2e+02 Score=30.98 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhhhhhchHHHHHH
Q 003863 278 EDLSKQVEGLQMSRLNEVEELAY 300 (790)
Q Consensus 278 E~L~~QlE~f~~dR~~dvEELv~ 300 (790)
+.|..+++.+...-....++|..
T Consensus 344 ~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 344 ETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555566663
No 342
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.31 E-value=25 Score=42.39 Aligned_cols=28 Identities=14% Similarity=-0.058 Sum_probs=13.4
Q ss_pred hHHHHHHHhhhhhhhhhHHhhhcCCCCCCCc
Q 003863 635 ADTLREAAFGYRDLKKLESEVSYYKDDPRVP 665 (790)
Q Consensus 635 ~dalReAa~ly~~L~~l~~e~s~~kddp~~p 665 (790)
.|-|+..+ .-|..+-.++.||-+..++-
T Consensus 552 ~e~l~~~~---~~l~~~~~~~~~~~~~~~~~ 579 (620)
T PRK14954 552 YEELMQDA---ALLSKEIESFYGIPLKLQIR 579 (620)
T ss_pred HHHHHhHH---HHHHHHHHHHhcCCceEEEE
Confidence 44455544 22333455555665554443
No 343
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.03 E-value=3.5e+02 Score=28.57 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH-hhhHHHhhhHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRV-GMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI-~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
|..|..++...-.+|..=..++ +-.......|++++.+......
T Consensus 20 i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~ 64 (206)
T PF14988_consen 20 IEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQA 64 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766655554444333 2233345555555555444433
No 344
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=48.96 E-value=3.8e+02 Score=31.39 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQA 146 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~ 146 (790)
-+|+.+|...-+.||.|=..|-.
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~ 158 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAE 158 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444443
No 345
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=48.58 E-value=1.2e+02 Score=37.22 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003863 126 ELDSLRSLLQESKEREFKLQAELSEWKRN 154 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE~eLlEyKEQ 154 (790)
-++-|...+..++.+=...|.+|..||.+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666677777443
No 346
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=48.29 E-value=3.5e+02 Score=28.45 Aligned_cols=30 Identities=3% Similarity=0.294 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.-..-|..||..+..|+.|+..|+.++.+.
T Consensus 24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e 53 (191)
T PTZ00446 24 EIYKAILKNREAIDALEKKQVQVEKKIKQL 53 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999888665
No 347
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=48.27 E-value=17 Score=36.00 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=4.6
Q ss_pred Cchhhhhhh
Q 003863 553 NVANVRSSM 561 (790)
Q Consensus 553 ~~a~~r~~m 561 (790)
+-+++|.+|
T Consensus 84 s~~~Ar~~~ 92 (133)
T PRK10781 84 SIPTARKRM 92 (133)
T ss_pred CHHHHHHHH
Confidence 344666544
No 348
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.57 E-value=6.5e+02 Score=31.30 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=58.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh-hhchhHHHHHHHHhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR-HTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr-~~NE~L~~QlE~f~~dR~ 292 (790)
..++.|..+..+.......|..+..+|=-+|+...-....+-.+||+++.. ++.|- +.=+.+..+|..++.-+.
T Consensus 233 ~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~-----~~~ls~d~I~~ve~Ev~Rl~qlK~ 307 (660)
T KOG4302|consen 233 KMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATE-----PNSLSLDIIEQVEKEVDRLEQLKA 307 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhc-----cccccHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888999999999999998887777776666555432 11111 011123455556666666
Q ss_pred chHHHHHHHHHhh
Q 003863 293 NEVEELAYLRWVN 305 (790)
Q Consensus 293 ~dvEELv~LR~~N 305 (790)
.-..|||.-+|..
T Consensus 308 s~mKeli~k~r~E 320 (660)
T KOG4302|consen 308 SNMKELIEKKRSE 320 (660)
T ss_pred HhHHHHHHHHHHH
Confidence 6688888655544
No 349
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.22 E-value=82 Score=32.01 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE 184 (790)
|.+|+.+|+.+..+++.|+.+++.|+.|
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555555543
No 350
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.21 E-value=4e+02 Score=28.76 Aligned_cols=32 Identities=6% Similarity=0.231 Sum_probs=22.4
Q ss_pred hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHH
Q 003863 275 HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSC 307 (790)
Q Consensus 275 ~~NE~L~~QlE~f~~dR~~dvEELv~LR~~Nac 307 (790)
+.......+|..|+..|-.|+.--+. .|+..+
T Consensus 184 ~is~~ik~El~rFe~er~~Dfk~~v~-~fles~ 215 (234)
T cd07665 184 RISATVRKEVIRFEKEKSKDFKNHII-KYLETL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44456667788899999888888765 555543
No 351
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=46.25 E-value=3.6e+02 Score=31.02 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH-h---hhhhhhccc-ccchHhHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK-N---DNKNAINMG-SSSSQNLEMEVVELRRLNK 231 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~-e---e~~~~~~e~-e~~~~~LE~Ev~ELRr~Nk 231 (790)
|..|..+......++..+......-..+-..+++++.+......++ . .....+..+ ++.++.|+.++..|+..+.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666555555555666555555555555555555444333321 0 011112111 3555666666666655443
Q ss_pred ---HHHHHHhhhhhhhhhhhhhhhhh
Q 003863 232 ---ELQMEKRNLACKFSSMENQLTSL 254 (790)
Q Consensus 232 ---eLQ~EkreL~~KLd~ae~~~~~~ 254 (790)
.+|-+.++|.+.+++++.-+..+
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~l 392 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETL 392 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776655443
No 352
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=46.01 E-value=91 Score=28.55 Aligned_cols=46 Identities=28% Similarity=0.230 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHH
Q 003863 223 VVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (790)
Q Consensus 223 v~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f 287 (790)
-.+|.+..++||.....|..|.+ .+++|.+.|+.+|+-|..-|.-+
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve-------------------~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVE-------------------EVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888888877777665 34788899999998887776644
No 353
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.93 E-value=3.9e+02 Score=28.34 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=30.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRN---LACKFSSMENQLTSL 254 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~Ekre---L~~KLd~ae~~~~~~ 254 (790)
.+++..=.||..||-.|..||.+|.| |-|=||....+.-.+
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkl 91 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKL 91 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHH
Confidence 45556667889999999999988765 567888877655433
No 354
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=45.91 E-value=2.7e+02 Score=34.43 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=17.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~ 249 (790)
..+..|...+.++.+.+.+.-.+.+.+...|...+.
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 290 (670)
T KOG0239|consen 255 AELKELNDQVSLLTREVQEALKESNTLQSDLESLEE 290 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444443
No 355
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=45.78 E-value=32 Score=34.52 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhhhcccchHHHHHHHH-hHHHHhhhccchhhhhhhcCCCcchhHHHH
Q 003863 582 QGEFVNSLIREVNNAVYQNIEDVVAFVK-WLDDELGFLVDERAVLKHFDWPEKKADTLR 639 (790)
Q Consensus 582 ~~~~I~~L~~eI~~~~~~dm~dlv~Fv~-wlD~eL~~L~DEraVL~~F~~Pe~K~dalR 639 (790)
..+|++.|-+.++.....|.+|...|-+ +.|+....=-+|.+|.+.+|.|..=+..+.
T Consensus 3 k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4688999999999888888888888877 888876666679999999999986555544
No 356
>PF13166 AAA_13: AAA domain
Probab=45.44 E-value=5.6e+02 Score=30.87 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=4.3
Q ss_pred hHHHHhh
Q 003863 357 SFIKKFK 363 (790)
Q Consensus 357 ~li~KLK 363 (790)
-|+..|+
T Consensus 513 yFla~l~ 519 (712)
T PF13166_consen 513 YFLAELK 519 (712)
T ss_pred HHHHHHh
Confidence 4666666
No 357
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.43 E-value=32 Score=36.63 Aligned_cols=64 Identities=25% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHH
Q 003863 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (790)
Q Consensus 219 LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f 287 (790)
||.|...+.....-|+.+.+....+|+.++.+...+-+-.| .+..||+.|-++|..|..|++..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e-----~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE-----GLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHHHhcc
Confidence 55555555555666666666666666666665555444222 55788888888888898888753
No 358
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=45.26 E-value=47 Score=38.96 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=44.7
Q ss_pred hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 152 KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 152 KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
|.+|.|.-|+.++.+=++|-..|.++|.-|+.+|..|.+|+..+..++.|
T Consensus 269 kKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 269 KKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred hHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 67777999999999999999999999999999999999999888777663
No 359
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.22 E-value=3.4e+02 Score=28.40 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ 234 (790)
|.-|+.+|.. +..++..-..+..+.+++..++.+.. +. ..+.+..+.+||..+.+|++....+-
T Consensus 88 V~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~~--------~~--~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 88 VKFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEKE--------AE--LKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred cHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHH--------Hh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666654 33333333444445555555554440 00 01123455556666655555544433
No 360
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.18 E-value=2.8e+02 Score=27.92 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=13.3
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
+++..+..+..+|+....+++.++..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ 31 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQ 31 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 361
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.96 E-value=58 Score=35.18 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 223 VVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 223 v~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
..|||-...++|.||-+|...|.--|
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 362
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.63 E-value=3.7e+02 Score=27.70 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhh-----hHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKI-----ENDEIVRRVGMLEDEKTSLSEQLAALSVI 198 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~-----Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~ 198 (790)
...|..++..|.........|+.++.++.+. +.+++.+....-. =....-.++..++.+...|+.++......
T Consensus 36 e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~--~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~ 113 (221)
T PF04012_consen 36 EEQLRKARQALARVMANQKRLERKLDEAEEE--AEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQ 113 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443111 3444444333211 11223333444445545555444444333
Q ss_pred HHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHH
Q 003863 199 LERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEK 237 (790)
Q Consensus 199 ~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ek 237 (790)
.. .+...+..|+..+.+|+..-..|....
T Consensus 114 ~~----------~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 114 VE----------KLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 123445556666666655555554433
No 363
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.47 E-value=3.4e+02 Score=27.24 Aligned_cols=31 Identities=26% Similarity=0.156 Sum_probs=24.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.....+|+.+|-....|+-.-.+++.+|...
T Consensus 2 ~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~k 32 (177)
T PF13870_consen 2 RQKRNEISKLRLKNITLKHQLAKLEEQLRQK 32 (177)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888888888887766
No 364
>PRK12704 phosphodiesterase; Provisional
Probab=44.35 E-value=6.3e+02 Score=30.24 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=31.8
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh
Q 003863 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD 261 (790)
Q Consensus 211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~ 261 (790)
.++++-++|+..-.+|.+..++|+....++....+.....+..++.+|..+
T Consensus 104 ~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~e 154 (520)
T PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE 154 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 344555555555556666666666666666666666666677777777543
No 365
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.09 E-value=1.1e+02 Score=35.19 Aligned_cols=75 Identities=28% Similarity=0.314 Sum_probs=55.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---chh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKR---NPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKE---QE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
..+..++..|+..++.++++-.+|+..|..++. +.. -.+...+++.-......|..++..|+++...|++++...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667889999999999999998888888777722 122 445555555555666778888888888888888877765
No 366
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=44.09 E-value=1.2e+02 Score=36.07 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-----HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-----I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
++.|+.+|+.+++...|+-.++..|+-+|++.-. ..-|.--|+-..++|+++-+.-.-+|++-+.|+.++
T Consensus 26 ~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i 100 (604)
T KOG3564|consen 26 NEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQI 100 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4899999999999999999999999999954422 333444444444455555544444455544444443
No 367
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.88 E-value=2e+02 Score=29.24 Aligned_cols=59 Identities=29% Similarity=0.354 Sum_probs=34.0
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
+...|..+|..|+++++.|+..+..+.-.. ..|+..=.+|++..+.|+..-+++..+|.
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~-----------------~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQS-----------------SRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----------------cccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677778888888888886665443211 12233333455555666666666555553
No 368
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=43.54 E-value=13 Score=43.33 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003863 718 KLSSVKLAKKYMRRV 732 (790)
Q Consensus 718 K~asv~LA~~ymkRv 732 (790)
.-++|+++..||+-.
T Consensus 358 ~~~~v~~~~~~~~F~ 372 (461)
T PLN03132 358 STDVVDAIARLSYFY 372 (461)
T ss_pred CCCHHHHHHHHHHHH
Confidence 345677777777643
No 369
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=43.48 E-value=41 Score=38.49 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=16.0
Q ss_pred HHHhhhcccchHHHHHHHH-hHHH
Q 003863 591 REVNNAVYQNIEDVVAFVK-WLDD 613 (790)
Q Consensus 591 ~eI~~~~~~dm~dlv~Fv~-wlD~ 613 (790)
.-+..|--.||+.|.+|.+ +.|.
T Consensus 252 A~LTTFNEvDMS~lm~mRk~ykda 275 (457)
T KOG0559|consen 252 AMLTTFNEVDMSNLMEMRKQYKDA 275 (457)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3345566678888888887 6664
No 370
>PRK11020 hypothetical protein; Provisional
Probab=43.35 E-value=63 Score=31.53 Aligned_cols=51 Identities=12% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 235 MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 235 ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
.|...|.-|||.-..++++.....+.++|++...|++ .|.++|+.+..-+.
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~-------~l~k~I~~lk~~~~ 55 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKA-------TLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3444455555555555555556678889999999988 77778777766554
No 371
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.34 E-value=1.5e+02 Score=26.50 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 003863 216 SQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
+.-|..|+.+|+..|..|..+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e 40 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEE 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 344455555555554444433
No 372
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.23 E-value=2e+02 Score=29.76 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=49.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~ 289 (790)
+....+...+.+|.+.+.+++.+..+|..+|+.+...- .+++--..+-++...|+...+.|..+++.+..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r------~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR------EESEEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777777777777777777888887774321 22333345678888899999999988885544
No 373
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.14 E-value=1.9e+02 Score=26.61 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=24.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
.+.+-|..++..|++....|+.+|..|..+++
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777888888888888888888877664
No 374
>PF14282 FlxA: FlxA-like protein
Probab=43.06 E-value=1.5e+02 Score=28.05 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQ 145 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE 145 (790)
+....|..|...|..|++.=..|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777766554444
No 375
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.05 E-value=35 Score=32.25 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHH
Q 003863 223 VVELRRLNKELQMEKRNLACKF-SSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL 298 (790)
Q Consensus 223 v~ELRr~NkeLQ~EkreL~~KL-d~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEEL 298 (790)
..++......++.|..+|+..| +.| +.||+.++.+-..+...|..|.+++..-..--.....+|
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEA------------N~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL 74 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEA------------NKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777888777 444 569998898888888888777777765444333333333
No 376
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.90 E-value=35 Score=40.21 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=6.8
Q ss_pred ecccCCCCchhhh
Q 003863 762 IHQFAGGFDAETM 774 (790)
Q Consensus 762 vhqFAGG~D~~t~ 774 (790)
+-...|-.|-+||
T Consensus 510 mg~i~~kk~ietm 522 (900)
T KOG4425|consen 510 MGEILGKKDIETM 522 (900)
T ss_pred Hhhhcccchhhcc
Confidence 3345555565554
No 377
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=42.73 E-value=6.6e+02 Score=30.04 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 127 LDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 127 I~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.+.|+..|..|..+-.+++.++..+
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~ 33 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSM 33 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666655
No 378
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=42.67 E-value=5.9e+02 Score=29.39 Aligned_cols=23 Identities=0% Similarity=0.082 Sum_probs=9.9
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
.++..+...|..++.+.+.++.+
T Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~ 194 (457)
T TIGR01000 172 KTKAQLDQQISKTDQKLQDYQAL 194 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 379
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.62 E-value=1e+02 Score=26.55 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHH
Q 003863 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (790)
Q Consensus 218 ~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f 287 (790)
|++.|+.-|.+....|+.+..-+..||..-. .+.+.+ .++|.+-++....+...=+.|..+|+.|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~----F~~kAP-~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNEN----FVEKAP-EEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT----HHHHS--CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----ccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888888888888888888888887432 344555 3578777777775555555666655544
No 380
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=42.50 E-value=57 Score=36.05 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 003863 525 PQVVEFYH 532 (790)
Q Consensus 525 PevvelYr 532 (790)
|+-+.+++
T Consensus 107 pe~grvdn 114 (297)
T PF07174_consen 107 PEPGRVDN 114 (297)
T ss_pred cccccccc
Confidence 34444444
No 381
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.49 E-value=26 Score=40.92 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=6.7
Q ss_pred hhchHHHHHHHHHhhHH
Q 003863 291 RLNEVEELAYLRWVNSC 307 (790)
Q Consensus 291 R~~dvEELv~LR~~Nac 307 (790)
|++.-+|... +++|
T Consensus 265 RFnS~~e~~~---~gi~ 278 (483)
T KOG2236|consen 265 RFNSEEEISF---LGIC 278 (483)
T ss_pred ecCchhhhhh---hccc
Confidence 4444454443 4555
No 382
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=42.30 E-value=1.3e+02 Score=32.26 Aligned_cols=84 Identities=23% Similarity=0.153 Sum_probs=41.1
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
+..+.+|+.|+..| ...++++.+.++.-..++.+-.+.......-+.+....++.....|...+..+..+++.+...=.
T Consensus 67 e~~le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~ 145 (256)
T PF14932_consen 67 EEDLEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVS 145 (256)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888 44444554444444444444333222222222223334444445455555555555555554433
Q ss_pred chHHH
Q 003863 293 NEVEE 297 (790)
Q Consensus 293 ~dvEE 297 (790)
.-+.+
T Consensus 146 ~l~~~ 150 (256)
T PF14932_consen 146 KLASE 150 (256)
T ss_pred HHHHH
Confidence 33333
No 383
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.27 E-value=2.8e+02 Score=26.74 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=24.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
.++.-|+..+..|....+.|+.+...+..+++..+..+
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666555444
No 384
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.86 E-value=1.1e+02 Score=27.04 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
+.||..|..|=....+|+.||.-|..++.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~ 31 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEK 31 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 385
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.67 E-value=1.9e+02 Score=26.57 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEWKRN-PKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQ-E~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
.+-..|...+..|+.+...+..++-..+.+ +.+.+|. .++..++.+|..|+++...+++++...
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~-------~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELK-------AEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666666666666332 2244443 345556666666666666666655543
No 386
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.67 E-value=1.6e+02 Score=29.42 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=52.1
Q ss_pred HHHHHHHHH-HhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH--HHhhhhhhhcccccchHhHHHHHHHHHHHHHHH
Q 003863 157 VLELERELE-AKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE--RKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233 (790)
Q Consensus 157 I~ELq~qL~-~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~--q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeL 233 (790)
|+||-++|. ....||.-|+|+--.|... =-+..++++. |+ .++|..-..|..+|.-|+..|.++
T Consensus 34 VReLNr~LrG~~reEVvrlKQrRRTLKNR------GYA~sCR~KRv~Qk-------~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 34 VRELNRHLRGLSREEVVRLKQRRRTLKNR------GYAQSCRVKRVQQK-------HELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665 3455788888777666533 1122233333 22 223333456777888888888888
Q ss_pred HHHHhhhhhhhhhhhhhh
Q 003863 234 QMEKRNLACKFSSMENQL 251 (790)
Q Consensus 234 Q~EkreL~~KLd~ae~~~ 251 (790)
+.|..-+.-|++++..-+
T Consensus 101 ~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 101 RRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888888888877554
No 387
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.54 E-value=6.9e+02 Score=29.89 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhch---h-----HHHHHHHHHHhhh----------hHHHHHHHHhhhHHHhh
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEWKRNP---K-----VLELERELEAKKI----------ENDEIVRRVGMLEDEKT 186 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE---~-----I~ELq~qL~~k~~----------Ei~~L~~kI~sLeaE~~ 186 (790)
.||+.|+..+++..+=.......+.+|++.+ + ..|||.=++.+-. =+..|..+|..++....
T Consensus 231 ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~ 310 (521)
T KOG1937|consen 231 EEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQME 310 (521)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHH
Confidence 3577777776665443333333444442221 1 4444433332221 34556666666666666
Q ss_pred hHHHHHHHHHHHHH
Q 003863 187 SLSEQLAALSVILE 200 (790)
Q Consensus 187 rLq~qv~e~~~~~~ 200 (790)
.|--|...+-.-..
T Consensus 311 ~ltqqwed~R~pll 324 (521)
T KOG1937|consen 311 ELTQQWEDTRQPLL 324 (521)
T ss_pred HHHHHHHHHhhhHH
Confidence 66666555543333
No 388
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.49 E-value=40 Score=40.82 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003863 127 LDSLRSLLQES 137 (790)
Q Consensus 127 I~~LR~~V~eL 137 (790)
|+.+|.+++.+
T Consensus 109 vd~Ir~l~e~~ 119 (620)
T PRK14954 109 VDDIRQLRENV 119 (620)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 389
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=40.84 E-value=6.6e+02 Score=29.45 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=55.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh-HHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchH
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD-IISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~-~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dv 295 (790)
+.|-+-|.+.-|.|.+||-+|-++..-|.+++..-..+.+ |.- -.++ =...+.|...=-|.++ ..+...|+...
T Consensus 288 r~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~K--EAqareak--lqaec~rQ~qlaLEEK-aaLrkerd~L~ 362 (442)
T PF06637_consen 288 RSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGK--EAQAREAK--LQAECARQTQLALEEK-AALRKERDSLA 362 (442)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444555566678888888888888887776643322222 111 1122 2233345555444444 67788888888
Q ss_pred HHHHHHHHhhHHHhhhhhhcccccC
Q 003863 296 EELAYLRWVNSCLRDELQNSCSTTN 320 (790)
Q Consensus 296 EELv~LR~~NacLR~EL~~~~sa~d 320 (790)
.||...+.--++++..+.--++|+|
T Consensus 363 keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 363 KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 8887654444445555543344444
No 390
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.75 E-value=2.7e+02 Score=24.96 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=24.8
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
+++..+..++.++..|+...+.|+.+..++..+|..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777666643
No 391
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.48 E-value=3.1e+02 Score=28.46 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH-----------------------hhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHH
Q 003863 216 SQNLEMEVVELRRLNKELQMEK-----------------------RNLACKFSSMENQLTSLAKASESDIISKIKAEALV 272 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~Ek-----------------------reL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~ 272 (790)
|..|..+|.+.|+.+.+|+.+. .+...||+.-+.+...| +.+-+-+++....
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L-----~qvN~lLReQLEq 92 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEEL-----AQVNALLREQLEQ 92 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHH
Q ss_pred HhhhchhHHHHHHHHhhhhhchHHHHH--HHHHhhHHHhhhhhhcccc
Q 003863 273 LRHTNEDLSKQVEGLQMSRLNEVEELA--YLRWVNSCLRDELQNSCST 318 (790)
Q Consensus 273 Lr~~NE~L~~QlE~f~~dR~~dvEELv--~LR~~NacLR~EL~~~~sa 318 (790)
.+..|+.|...+..+..+-....+||. ...|-... .-+..|++.
T Consensus 93 ~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee--~~~~~y~~~ 138 (182)
T PF15035_consen 93 ARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEE--ENFNQYLSS 138 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcc
No 392
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.13 E-value=35 Score=38.55 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=33.5
Q ss_pred hcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003863 209 INMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (790)
Q Consensus 209 ~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~ 252 (790)
-.++++++.+||..+.++......++.+...|..+|+..|..+-
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788888888888888888888888888888877776543
No 393
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=39.97 E-value=32 Score=39.74 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=4.5
Q ss_pred cccccccccccc
Q 003863 43 WGLKGFTVDKKT 54 (790)
Q Consensus 43 ~~~~~~~~~~~~ 54 (790)
||+-.-.+||+|
T Consensus 35 ~~~~~~~~dkr~ 46 (563)
T KOG1785|consen 35 RAVPSTVLDKRT 46 (563)
T ss_pred cccchhHHHHHH
Confidence 443333334433
No 394
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.89 E-value=1.1e+02 Score=37.01 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 003863 135 QESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGML 181 (790)
Q Consensus 135 ~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sL 181 (790)
.+|+.|+++|+.++.+| .. |.||++.+.-+.-|+..|+..|+.-
T Consensus 96 ~ele~krqel~seI~~~n~k---iEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTK---IEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 45666666666666665 11 4455555555555555555555433
No 395
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=39.77 E-value=16 Score=40.06 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=7.7
Q ss_pred cchhHHHHHHh
Q 003863 523 RAPQVVEFYHS 533 (790)
Q Consensus 523 RsPevvelYrs 533 (790)
.+|-.+.||+.
T Consensus 201 ~APmaGtf~r~ 211 (274)
T PLN02983 201 KSPMAGTFYRS 211 (274)
T ss_pred eCCcCeEEEec
Confidence 56777777774
No 396
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=39.49 E-value=6.1e+02 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhHHHhhhhhhcc
Q 003863 295 VEELAYLRWVNSCLRDELQNSC 316 (790)
Q Consensus 295 vEELv~LR~~NacLR~EL~~~~ 316 (790)
-+-|.++...|..||.-|++..
T Consensus 220 eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777887777763
No 397
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=39.42 E-value=60 Score=27.07 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~ 199 (790)
|..|+++|+.||.+-+.||.-+..|-++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999998887653
No 398
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=39.34 E-value=45 Score=37.59 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=10.0
Q ss_pred hHHhhhhhheeec
Q 003863 751 MLLQGVRFAFRIH 763 (790)
Q Consensus 751 lL~qgvrFAfRvh 763 (790)
-+++-.-||||+-
T Consensus 386 dIvkiMAYayRmA 398 (407)
T PF04625_consen 386 DIVKIMAYAYRMA 398 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 5677888888874
No 399
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.02 E-value=2.5e+02 Score=25.26 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=16.8
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 215 ~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.+.++..+.+||+-.+..|+.+..++...|..|+
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555554
No 400
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=39.01 E-value=30 Score=42.00 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=15.8
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 003863 467 RVLRVPNPPPRPSCGISGGTKEERQAQIPQP 497 (790)
Q Consensus 467 ra~rvP~PPP~ps~~~~~~~~~~~~~~vPpP 497 (790)
|+-|.|+|||.|.... |...+..++||-
T Consensus 748 ~~sr~~p~~p~~~~~~---Pv~~~~sq~~ps 775 (784)
T KOG3253|consen 748 RDSRPPPPPPLPILQN---PVATPMSQQPPS 775 (784)
T ss_pred ccCCCCCCCCcccccC---ccccccccCCCC
Confidence 5566677777776654 333445555444
No 401
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=38.88 E-value=1.3e+02 Score=32.13 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh--HH-HHHHHHHHhhh--hHHHHHHHHhhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPK--VL-ELERELEAKKI--ENDEIVRRVGML 181 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~--I~-ELq~qL~~k~~--Ei~~L~~kI~sL 181 (790)
+.|-.+++..|..|+.+...|+.++.+. +.+|+ ++ +=++++..+.. ||.+|+..-..|
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qL 247 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQL 247 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888 66666 33 33344444332 555555443333
No 402
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.64 E-value=8.1e+02 Score=29.88 Aligned_cols=52 Identities=31% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhh---chhHHHHHHHHhhhhhchHHHHHHHHH-----hhHHHhhhhhhc
Q 003863 264 SKIKAEALVLRHT---NEDLSKQVEGLQMSRLNEVEELAYLRW-----VNSCLRDELQNS 315 (790)
Q Consensus 264 a~~~eE~~~Lr~~---NE~L~~QlE~f~~dR~~dvEELv~LR~-----~NacLR~EL~~~ 315 (790)
.++++|+..|... -+.|..+++.+...-..-.+.|...|- +..++..||+.+
T Consensus 328 ~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 328 DKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677787777733 346777777777777777777774433 345677777765
No 403
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.06 E-value=2.5e+02 Score=29.76 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEA 166 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~ 166 (790)
+.+...+..+|..-+.|-..|+.+|.--+.|+. |..-|.+...
T Consensus 111 eAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ 154 (192)
T PF11180_consen 111 EAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQ 154 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888889999999988888777766 6655555443
No 404
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=37.91 E-value=1.3e+02 Score=34.17 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+.-+..|+..|.+|-..-.|||.||+..
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q~ 247 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQI 247 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999876
No 405
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.71 E-value=56 Score=30.85 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=22.7
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 215 ~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
...+|..++.+++..|.+|+.+|..|..+++.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777776666544
No 406
>PRK14141 heat shock protein GrpE; Provisional
Probab=37.57 E-value=3.9e+02 Score=28.46 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCCCCccccccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 104 QVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
|++-+.+ .+...+..+..+|+.|+..+.+|+++-.++.+++.-|
T Consensus 21 ~~~~~~~----~~~~~~~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~ 64 (209)
T PRK14141 21 PVDREAK----PYEMEDDPEPDPLEALKAENAELKDRMLRLAAEMENL 64 (209)
T ss_pred ccccccc----cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444 3444557789999999999999999999999999999
No 407
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.54 E-value=1.9e+02 Score=30.42 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=41.6
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-cccccchHhHHHHHHHHHHHHHHHHHHHhhhh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLA 241 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~-~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~ 241 (790)
-...|...+..|+.+...+..++-+.-..++..|.....+ ..++..-+++-..+.|+..++.+|+.|...|.
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888888888888877777655543333 12334444444444444444444444444333
No 408
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=37.53 E-value=5.3e+02 Score=27.38 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=14.4
Q ss_pred cchHhHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNK-ELQMEKRNLACKFSSME 248 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~Nk-eLQ~EkreL~~KLd~ae 248 (790)
.++..|+..+.+.+.... .+++....|...|....
T Consensus 99 ~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~ 134 (247)
T PF06705_consen 99 DRIEALEEEIQEEKEERPQDIEELNQELVRELNELQ 134 (247)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444433222 23444444444444333
No 409
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.18 E-value=2.2e+02 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
+.++.-+-..-..++..|+.++..|+..++.++.++.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333444555555555555555555555444
No 410
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=37.15 E-value=6.3e+02 Score=28.19 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK 156 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~ 156 (790)
.+-..-|+.|.....+|-..-.+++.++..+ |.++.
T Consensus 18 ~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~ 54 (309)
T PF09728_consen 18 SSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQ 54 (309)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777766666677666666 43333
No 411
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=37.07 E-value=98 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHH
Q 003863 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq 189 (790)
.+|.++++....++..+...+..+..+...|+
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~ 64 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQ 64 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666777777777777666665553
No 412
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.88 E-value=36 Score=42.89 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.7
Q ss_pred ccchhHHHHhhcC
Q 003863 353 GRRLSFIKKFKKW 365 (790)
Q Consensus 353 sKk~~li~KLKkW 365 (790)
.-+..++.+|...
T Consensus 875 a~~~~~~~~l~~~ 887 (1080)
T KOG0566|consen 875 AGKTELITKLPEL 887 (1080)
T ss_pred ccccccccccccC
Confidence 4445555555543
No 413
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.81 E-value=39 Score=31.73 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863 262 IISKIKAEALVLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 262 ~va~~~eE~~~Lr~~NE~L~~QlE~f~ 288 (790)
++..+.+++..|+..-+.|..+.+.|.
T Consensus 101 i~~~A~~~~~~l~~~~~~lk~~~~~~~ 127 (131)
T PF05103_consen 101 IIEEARAEAERLREEIEELKRQAEQFR 127 (131)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655556665555443
No 414
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.41 E-value=1.3e+02 Score=28.84 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
|.+|+.+|..-..++..|+..|..|-+||.+|+-+...+-....
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888999999999888888888766655544444
No 415
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.24 E-value=8.2e+02 Score=29.25 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHhhh----hhchHHHHHHHHHhhHHHhhhhhhcccccC
Q 003863 262 IISKIKAEALVLRHTNEDLSKQVEGLQMS----RLNEVEELAYLRWVNSCLRDELQNSCSTTN 320 (790)
Q Consensus 262 ~va~~~eE~~~Lr~~NE~L~~QlE~f~~d----R~~dvEELv~LR~~NacLR~EL~~~~sa~d 320 (790)
++.=+++.+. +..++|+..... |....+++..|.=.|..+..|-.+++.|+-
T Consensus 141 ll~Pl~e~l~-------~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 141 LLSPLREQLD-------GFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444556666 555666655544 455555555666678888888888877763
No 416
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.89 E-value=42 Score=31.98 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHhh
Q 003863 265 KIKAEALVLRHTNEDLSKQVEGLQM 289 (790)
Q Consensus 265 ~~~eE~~~Lr~~NE~L~~QlE~f~~ 289 (790)
.+.+|-..||.+|+.|...|.....
T Consensus 33 ~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 33 ELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666666666655543
No 417
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=35.84 E-value=4.4e+02 Score=30.00 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 003863 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAK 256 (790)
Q Consensus 220 E~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~ 256 (790)
..-|..-+|...+|++|++-|-+-|.-|.-.++.+..
T Consensus 58 aNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~ 94 (351)
T PF07058_consen 58 ANAVRDYQRQVQELNEEKRTLERELARAKVSANRVAT 94 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3456778889999999999999999888766655533
No 418
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.77 E-value=2.6e+02 Score=31.65 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHH-hhhHHHhhhHHHHHHHH
Q 003863 131 RSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRV-GMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 131 R~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI-~sLeaE~~rLq~qv~e~ 195 (790)
++..-+||.+|..|..++..- ||.|+ ++|-++.|-.+..++..+.+.- ..|+.+.+.|.+++...
T Consensus 329 ~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f 396 (406)
T KOG3859|consen 329 NEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAF 396 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888877777 88888 8888888888777666555432 34444444444444333
No 419
>smart00338 BRLZ basic region leucin zipper.
Probab=35.63 E-value=90 Score=26.45 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 156 KVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 156 ~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
.+.+|+.++..-..+...|..+|..|+.++..|.+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666666666666666666666666666665554
No 420
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=35.30 E-value=1.6e+02 Score=33.19 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
+...+.+......++|.+..++..|.=|..-|+.++..|..-..
T Consensus 14 ~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s 57 (355)
T PF09766_consen 14 IKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKS 57 (355)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 44555566667778999999999999999999988887754333
No 421
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=35.23 E-value=3.4e+02 Score=27.51 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---hh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRN---PK--VLELERELEAKKIENDEIVRRVGMLEDEKTSL 188 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQ---E~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rL 188 (790)
...||+.++..|..|.+++..|+.++-+..++ +. +.+.+.++...--+.+.|..-....+++...+
T Consensus 65 ~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~~e~~~~ 135 (152)
T PF07321_consen 65 SLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQAEARQQ 135 (152)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999988887222 22 66666666655555555554444444444333
No 422
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.16 E-value=2.3e+02 Score=33.19 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAEL 148 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eL 148 (790)
...+|..|+..|+.|+.+-.+++.++
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~ 94 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRG 94 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666665555544444433
No 423
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.05 E-value=6.9e+02 Score=28.05 Aligned_cols=121 Identities=19% Similarity=0.237 Sum_probs=67.1
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHH--HHhhhhhhhhhh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM--EKRNLACKFSSM 247 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~--EkreL~~KLd~a 247 (790)
||+.|+-+|..||+..-.++.++.+..+..++.. .....|..|+.+||...++... ++..|+.=-+..
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K----------~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ 182 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQK----------RAHDSLREELDELREQLKQRDELIEKHGLVLVPDAT 182 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCC
Confidence 8888888888888877777666644333322111 1233445555555555544322 333333322211
Q ss_pred hhhhhhh-cc--cChhhHHHHHHHHHHHHhhh-chhHHHHHHHHhhhhhchHHHHHHHH
Q 003863 248 ENQLTSL-AK--ASESDIISKIKAEALVLRHT-NEDLSKQVEGLQMSRLNEVEELAYLR 302 (790)
Q Consensus 248 e~~~~~~-~~--~~Es~~va~~~eE~~~Lr~~-NE~L~~QlE~f~~dR~~dvEELv~LR 302 (790)
-.-.+.- .+ .+-..+|+ .+.+..|... +.-|+..|..|-..|...++++-.|+
T Consensus 183 ngd~~~~~~~~~~~~~~~vs--~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk 239 (302)
T PF09738_consen 183 NGDTSDEPNNVGHPKRALVS--QEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLK 239 (302)
T ss_pred CCccccCccccCCCcccccc--hhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 00 01122344 7888889877 66788999999988888777776643
No 424
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.83 E-value=5.4e+02 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHh
Q 003863 260 SDIISKIKAEALVLR 274 (790)
Q Consensus 260 s~~va~~~eE~~~Lr 274 (790)
.+.+.+++++...++
T Consensus 134 p~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555333
No 425
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=34.78 E-value=4.4e+02 Score=25.71 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
+.++++++........-|..++..++...+.+.+++.-..
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555554443
No 426
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.70 E-value=1e+02 Score=36.50 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhHHHhhhHHHHH
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv 192 (790)
...+..+|+.|++|++.|++|+
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544
No 427
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.66 E-value=8.4e+02 Score=28.90 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=16.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
+.++-.-+...+.+-.+|+..-..|..++..++
T Consensus 250 leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~q 282 (446)
T KOG4438|consen 250 LEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQ 282 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 334444444455555555555555555555544
No 428
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.58 E-value=1.3e+03 Score=31.02 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=35.9
Q ss_pred cchHhHHHHHHHHHHHHHHH---------------------HHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHH
Q 003863 214 SSSQNLEMEVVELRRLNKEL---------------------QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALV 272 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeL---------------------Q~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~ 272 (790)
+.+.+||.-|.+|+..-..- +..++.|-..++.+...+.. ..| -+..+++-+.+
T Consensus 1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~---r~~--g~~~ar~rAe~ 1693 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEK---RME--GSQAARERAEQ 1693 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh--cchhHHHHHHH
Confidence 77888888888887643221 12222333333333322211 111 12345777778
Q ss_pred HhhhchhHHHHHH
Q 003863 273 LRHTNEDLSKQVE 285 (790)
Q Consensus 273 Lr~~NE~L~~QlE 285 (790)
||.+-++|+-|-.
T Consensus 1694 L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQAN 1706 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776654
No 429
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.51 E-value=2.2e+02 Score=33.46 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
.-+..+..+|+....+|..+.+++..+|+.++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 430
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.43 E-value=4.7e+02 Score=31.61 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhh----------hHHHHHHHHhhhHHHhh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKI----------ENDEIVRRVGMLEDEKT 186 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~----------Ei~~L~~kI~sLeaE~~ 186 (790)
++..-+..+-.+|+++.++-..|+ .+.+. ++--. |.+||..|...-. ++.++..+....+.+.+
T Consensus 285 e~rk~v~k~~~l~q~~~~~~~eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ 363 (613)
T KOG0992|consen 285 EKRKAVKKRDDLIQSRKQVSFELE-KAKDEIKQNDDKVKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKK 363 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHH
Q ss_pred hHHHHHHHHH-------HHHHHHhhhhhhhcccc-----cchHhHHHHHHHHHHHH
Q 003863 187 SLSEQLAALS-------VILERKNDNKNAINMGS-----SSSQNLEMEVVELRRLN 230 (790)
Q Consensus 187 rLq~qv~e~~-------~~~~q~ee~~~~~~e~e-----~~~~~LE~Ev~ELRr~N 230 (790)
.++..++.+. ...+|+=+-.+-++... ..|++|+.|..+-||.+
T Consensus 364 ee~tlla~~~dr~se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i 419 (613)
T KOG0992|consen 364 EEKTLLAAADDRFSEYSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAI 419 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 431
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.28 E-value=1.1e+02 Score=25.90 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
+.+|+..+..-..+.+.|...+..|+.+...|..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444444433
No 432
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.27 E-value=8.4e+02 Score=28.77 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=35.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
+.+..|.....+|...-..+.-|..+|...+..-- .=++...+++.+...+..+++.--..+..
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~----------------~q~~kl~~~~~E~kk~~~~l~~~l~~~q~ 224 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQR----------------AQQAKLAQLLEERKKTLAQLNSELSADQK 224 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443332111 11345556667777777777654444444
Q ss_pred hHHHHH
Q 003863 294 EVEELA 299 (790)
Q Consensus 294 dvEELv 299 (790)
-.+||-
T Consensus 225 ~l~eL~ 230 (420)
T COG4942 225 KLEELR 230 (420)
T ss_pred HHHHHH
Confidence 444444
No 433
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.24 E-value=74 Score=37.70 Aligned_cols=9 Identities=44% Similarity=0.619 Sum_probs=4.9
Q ss_pred chhhhhhhh
Q 003863 445 RPQFSANRL 453 (790)
Q Consensus 445 r~~~~~~~~ 453 (790)
||.+-|+.+
T Consensus 44 rpkks~grq 52 (900)
T KOG4425|consen 44 RPKKSGGRQ 52 (900)
T ss_pred CCCCCCccc
Confidence 666555543
No 434
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=34.17 E-value=1.3e+02 Score=33.22 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=46.9
Q ss_pred HHHHHHHhhhhhhhhhHHhh---hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 003863 636 DTLREAAFGYRDLKKLESEV---SYYKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNC 698 (790)
Q Consensus 636 dalReAa~ly~~L~~l~~e~---s~~kddp~~pc~~al~Km~~l~dKvErsv~~LeRtRd~a~~ry 698 (790)
+-|.+|+..|.+|..-..-+ ++|+..+ --.+.+|.+|..++-++|+...+++..|+....-|
T Consensus 137 eLL~laa~fi~~Le~~LetIrwip~~~~~~-~~m~~aL~ki~~lvae~E~l~e~ilkwRe~~ke~~ 201 (277)
T PF15003_consen 137 ELLELAASFIEKLEEHLETIRWIPNFDENP-SNMDKALAKIDALVAECEELAEQILKWREQQKEVS 201 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888776644433 3555544 45699999999999999999999999999764444
No 435
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=33.82 E-value=2.6e+02 Score=28.61 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHhh---hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 127 LDSLRSLLQESKER--------EFKLQAELSEW---KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 127 I~~LR~~V~eLqeR--------E~kLE~eLlEy---KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
++.|-.+|++|-++ |..--.++.|| -++|. -.+....|+..-.||+.|+.+++..|.|+.+.+..+++
T Consensus 23 ~d~~~~lVe~lve~SdfY~~gvEfdw~~eFveyV~cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 23 NDTFIKLVEELVERSDFYSSGVEFDWKDEFVEYVDCVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 45566667666665 33344677888 55555 44555667777789999999999999999888777777
Q ss_pred HHHHHH
Q 003863 195 LSVILE 200 (790)
Q Consensus 195 ~~~~~~ 200 (790)
.++.+=
T Consensus 103 ~LK~ki 108 (158)
T PF03112_consen 103 LLKIKI 108 (158)
T ss_pred HHHHHH
Confidence 665543
No 436
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=33.81 E-value=69 Score=41.10 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.4
Q ss_pred hhhhhcCCC---cccccchh
Q 003863 696 RNCREFQIP---TAWMLDDG 712 (790)
Q Consensus 696 ~ryk~~~Ip---~~wmlD~g 712 (790)
.-|.+.+|| +-|.-|..
T Consensus 357 ~iF~~L~iPYePvrw~~D~~ 376 (1228)
T PRK12270 357 EIFESLRIPYEPVRWATDIP 376 (1228)
T ss_pred HHHHHhCCCCCCccccCCCC
Confidence 357888886 45988875
No 437
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.09 E-value=9e+02 Score=28.79 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 158 LELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
.+....++.....++.|...|..|..
T Consensus 161 eea~~~a~~~~~kve~L~~Ei~~lke 186 (522)
T PF05701_consen 161 EEAVSAAEENEEKVEELSKEIIALKE 186 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344333344444444433333
No 438
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=32.82 E-value=8.4e+02 Score=28.35 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=39.4
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhh---hhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKK---IENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~---~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
..|++.-++.|.-+...-+.-..++-..|.-. +.+-. |..|+..-+..+ +|=|.| +.-|+.|.++|+.|+.
T Consensus 81 p~ct~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDl---t~~LEKEReqL~QQiE 156 (561)
T KOG1103|consen 81 PQCTESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDL---TAHLEKEREQLQQQIE 156 (561)
T ss_pred ceeccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchH---HHHHHHHHHHHHHHHH
Confidence 44556677777776644333333333444444 44444 776665554433 344444 3456777788887764
No 439
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=32.67 E-value=1e+02 Score=26.28 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhh----hHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKI----ENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~----Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
|.||+++|+.+-. +-.-....|+.|+.||..|.+++.
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665442 344455666777777777776654
No 440
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.63 E-value=7.2e+02 Score=27.48 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863 267 KAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (790)
Q Consensus 267 ~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv 299 (790)
+++++.|.++-..|..+|+.|..++. |+-|.|
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~~~~-~~Re~i 230 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQAQAQ-DPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHh
Confidence 33344444444444444444444444 444444
No 441
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.31 E-value=1.4e+02 Score=27.36 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI 198 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~ 198 (790)
|.+||..|..-..+|+..+.....|+.||+-||.-+..++..
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999888777543
No 442
>PLN03188 kinesin-12 family protein; Provisional
Probab=32.26 E-value=8.3e+02 Score=32.65 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=21.9
Q ss_pred Hhhhhhhhhhhhhhhhhhccc---ChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 237 KRNLACKFSSMENQLTSLAKA---SESDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 237 kreL~~KLd~ae~~~~~~~~~---~Es~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
-.||.+||.-||..++.-.+. -|-+ -++++.++++||..++.=..-+++
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe-~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQE-AAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666433221111 0111 125566666666444333333343
No 443
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.96 E-value=2.4e+02 Score=25.36 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863 226 LRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 226 LRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~ 288 (790)
.-....+|+.||-+|..|+-..+.++... .+.. +..+..+-..|+.+.+.|.+++...+
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~---~~~~-~~~~~keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKL---GPES-IEELLKENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhc---cccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666677777777666665532 2222 22233444446666666666665443
No 444
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=31.81 E-value=70 Score=36.71 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=4.3
Q ss_pred cccccchhH
Q 003863 519 GVVQRAPQV 527 (790)
Q Consensus 519 ~kv~RsPev 527 (790)
...+|+|-+
T Consensus 108 ~~~~~~pv~ 116 (376)
T PRK13855 108 PRPEETPIF 116 (376)
T ss_pred cccccCceE
Confidence 335555543
No 445
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.70 E-value=53 Score=31.63 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhcccChhh--HHHHHHHHHHHHhhhchhHHHHHHHH
Q 003863 235 MEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGL 287 (790)
Q Consensus 235 ~EkreL~~KLd~ae~~~~~~~~~~Es~--~va~~~eE~~~Lr~~NE~L~~QlE~f 287 (790)
|++++|..++...|.++..+..-.+.= .|..+.+|-..||.+|+.|.+.|..+
T Consensus 1 Mdk~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 1 MDKKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 446
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.36 E-value=1.5e+02 Score=29.93 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhh----hHHHHHHHH
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKT----SLSEQLAAL 195 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~----rLq~qv~e~ 195 (790)
|..+-.+|...+..+..+++....|+.+|-+.-+| |..|+. .+.-++.|+.+|..|++++. ..++++++.
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~--i~~Lk~----~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQ--IKDLKK----SAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>smart00338 BRLZ basic region leucin zipper.
Probab=31.28 E-value=94 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=12.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLA 241 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~ 241 (790)
..+..|+.+..+|+..+..|+.++..|.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 448
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=31.00 E-value=8.4e+02 Score=28.98 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
+.||++...+|.+|.+|+..+-.--+-|-++||.
T Consensus 352 ~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~Lqr 385 (446)
T PF07227_consen 352 IEELESIVRIKQAEAKMFQLKADEARREAEGLQR 385 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777766666664
No 449
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=30.96 E-value=2.3e+02 Score=33.99 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=16.2
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
.|.++.++|.+||+.++--..|+-.
T Consensus 598 ki~~me~Ei~glq~DkQ~ar~qIh~ 622 (790)
T PF07794_consen 598 KIGFMEMEIGGLQADKQTARNQIHR 622 (790)
T ss_pred hhhhhhhhhcchhhhHHHHHHHHHH
Confidence 5667777777777776655555443
No 450
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.92 E-value=2.2e+02 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
|+.|...+.....++..|+.+++.++.+...|++.+.
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555556666666666666666666665543
No 451
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.72 E-value=1.2e+02 Score=30.24 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchh----HHHHHHHHHHhhh----hHHHHHHHHhhhHHHhhhHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW---KRNPK----VLELERELEAKKI----ENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy---KEQE~----I~ELq~qL~~k~~----Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
+.-|..|=..|-.|+-==..||.=-.=| +=|.+ |.||++=-.++.- ..+ ..-.+..|.++...+|..+
T Consensus 11 eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~-~~~~~~~l~a~~~e~qsli 89 (131)
T PF04859_consen 11 EALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSD-PSPQVARLAAEIQEQQSLI 89 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCccccccccchHHHHHHH
Confidence 4445555555555554444444322223 33333 6677654443332 000 1134455666777777777
Q ss_pred HHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 193 AALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 193 ~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
.-|-.+.++-+ ..++.=+.||..||+...++...|+.|..||
T Consensus 90 ~~yE~~~~kLe----------~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 90 KTYEIVVKKLE----------AELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77666655422 2233335788899999999999999988876
No 452
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.67 E-value=7.3e+02 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=20.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
+.++++-..+.|+|....+|+++--.+...+..+.++
T Consensus 221 ke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 221 KEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555556665555555555555443
No 453
>PRK00106 hypothetical protein; Provisional
Probab=30.56 E-value=3.9e+02 Score=32.21 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003863 720 SSVKLAKKYMRRVAMELQ 737 (790)
Q Consensus 720 asv~LA~~ymkRv~~El~ 737 (790)
.++.||+.--+++-.||.
T Consensus 498 ~~~~la~~ia~~Ie~~~~ 515 (535)
T PRK00106 498 QVTILAHKVREKIENNLD 515 (535)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 445566665556655554
No 454
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=30.45 E-value=75 Score=29.12 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=41.6
Q ss_pred HHHHhhhhhhhhhHHhhhc---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhc
Q 003863 639 REAAFGYRDLKKLESEVSY---YKDDPRVPCDLALKKMVSLSEKMERTVYALLRTRETLMRNCREF 701 (790)
Q Consensus 639 ReAa~ly~~L~~l~~e~s~---~kddp~~pc~~al~Km~~l~dKvErsv~~LeRtRd~a~~ryk~~ 701 (790)
+.....|..|+.+...+++ |-.+--+ -|.+|+||...|=-.|..+..|.-.-+....+|+-|
T Consensus 3 ~~i~~aY~~Lr~~~~~~~~~~n~p~~~f~-sd~~LKk~A~~LP~te~eF~~l~g~~~~~~~kFkyF 67 (80)
T PF11408_consen 3 RHITSAYEKLREISINLSNRMNPPNDNFM-SDTILKKMATKLPTTEEEFSKLVGINEQQRKKFKYF 67 (80)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSSS--S-SS--HHHHHHHHHH---SHHHHGGGS---HHHHHHGGGT
T ss_pred chHHHHHHHHHHHHHHHhhccCCCccccC-CHHHHHHHHHHCCCCHHHHHHhcCCcHHHHHHHHHH
Confidence 4567789999988877763 3222224 489999999999999999999998888888888765
No 455
>PRK14127 cell division protein GpsB; Provisional
Probab=30.44 E-value=1e+02 Score=29.63 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh----------hhhhcccccchHhHHHHH
Q 003863 164 LEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN----------KNAINMGSSSSQNLEMEV 223 (790)
Q Consensus 164 L~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~----------~~~~~e~e~~~~~LE~Ev 223 (790)
|..=..+...|..++..|+.++.+|++++.++..-...-+.. ..-..+|-++|..||-+|
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
No 456
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.43 E-value=4.5e+02 Score=24.42 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
.+...|..+|..|+.....|+.++.++..++.
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~ 37 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQKLEAQLTEYEKAKE 37 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777776666
No 457
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=30.18 E-value=69 Score=41.82 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=25.1
Q ss_pred HHHHhh--hhchhHHHHHHHHHHhhhhHHHHHHHHhhhH
Q 003863 146 AELSEW--KRNPKVLELERELEAKKIENDEIVRRVGMLE 182 (790)
Q Consensus 146 ~eLlEy--KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLe 182 (790)
..|++| ..++++.=|=+||+.+--++.+|.+.+..|-
T Consensus 1252 lrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLD 1290 (1958)
T KOG0391|consen 1252 LRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLD 1290 (1958)
T ss_pred hheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHH
Confidence 466667 5566655566788877777777777766654
No 458
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=30.06 E-value=1.5e+02 Score=30.36 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=50.5
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hchh----HHHHHHHHHHhhhhHHHHHHHHhhhHHHhh
Q 003863 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEWK-----RNPK----VLELERELEAKKIENDEIVRRVGMLEDEKT 186 (790)
Q Consensus 119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyK-----EQE~----I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~ 186 (790)
+.++...-|..|+..|..-|++=..+-.+|..|+ +... +.+++.-|.-....|..|+.+|..++++.+
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3355678899999999999999999999998882 2222 667888888888889998888888877643
No 459
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.04 E-value=8.7e+02 Score=30.73 Aligned_cols=74 Identities=19% Similarity=0.074 Sum_probs=38.5
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhh---hhhh-------hccc-c--cchHhHHHHHHHHHHHHHHHHHHHh
Q 003863 172 DEIVRRVGMLEDEKTSLSEQLAALSVILERKND---NKNA-------INMG-S--SSSQNLEMEVVELRRLNKELQMEKR 238 (790)
Q Consensus 172 ~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee---~~~~-------~~e~-e--~~~~~LE~Ev~ELRr~NkeLQ~Ekr 238 (790)
++..+++..++-+...+.+++..+-...+|+.+ ..++ +.++ + ...+++|.--.||+..|..||..-.
T Consensus 523 ~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~~~~~~i~~l~~el~eq~~~~~~~~~ 602 (809)
T KOG0247|consen 523 KECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILESTEYEEEIEALDQELEEQKMELQQKFS 602 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHhhhHHHHhhcc
Confidence 444555555555567777777777666665221 1111 1223 2 2245555555566666666665555
Q ss_pred hhhhhhh
Q 003863 239 NLACKFS 245 (790)
Q Consensus 239 eL~~KLd 245 (790)
+...+..
T Consensus 603 ~~~~~~~ 609 (809)
T KOG0247|consen 603 EKKKAMA 609 (809)
T ss_pred chhHHHh
Confidence 5544443
No 460
>PF15456 Uds1: Up-regulated During Septation
Probab=30.03 E-value=3.5e+02 Score=26.53 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE 184 (790)
|.+|.+++..-...++-+..++. |+..
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k 50 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESK 50 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 55555555555555555555555 4443
No 461
>PRK00106 hypothetical protein; Provisional
Probab=29.98 E-value=1.1e+03 Score=28.68 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=31.6
Q ss_pred cccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh
Q 003863 210 NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD 261 (790)
Q Consensus 210 ~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~ 261 (790)
..++++-++|+..-.+|....++|+..+.++....+.....+..++.+|..+
T Consensus 118 e~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e 169 (535)
T PRK00106 118 ENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3344555555555556666666666666666666666666666777777543
No 462
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.97 E-value=65 Score=28.31 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
-|..|+..|..||+|..||++++...
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778899999999999999988643
No 463
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.95 E-value=4.7e+02 Score=26.48 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=32.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~ 252 (790)
..+.-|...+.+|-+....|+....+|+.+...-+..+.
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999988888887665543
No 464
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=29.89 E-value=4.9e+02 Score=27.62 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
+...+.+.|..=+++-++|+..+. ....|++++..+.....+....|+.|-.+.+..+..||.+.+.|-...+..
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~---~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~ 187 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQ---IARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEP 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455555555566666665443 333344444444444556678899999999999999999988887766543
No 465
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.85 E-value=9.5e+02 Score=28.05 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=27.5
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRN 154 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQ 154 (790)
.......+..+...|+++++.-..|+..+..+|++
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788899999999998888888887776554
No 466
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=29.79 E-value=86 Score=30.49 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---HHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK---VLELEREL 164 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~---I~ELq~qL 164 (790)
..|++.||..|++|.+|-..||.|=.-+|..-. +..|+.+|
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhc
Confidence 689999999999999999999887554444433 44444443
No 467
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=29.77 E-value=1.6e+02 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhh
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~r 187 (790)
-++|.+.|..+..||+.|+.-|++|+.+-.+
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999887443
No 468
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.64 E-value=3.8e+02 Score=29.27 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
+.+.+||.|+.|++...++|+-||.-|-.+++
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777766555444
No 469
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=29.57 E-value=79 Score=35.73 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=6.1
Q ss_pred chhHHHHHHhhc
Q 003863 524 APQVVEFYHSLM 535 (790)
Q Consensus 524 sPevvelYrsL~ 535 (790)
+|.-..||--|.
T Consensus 175 ap~~~df~a~~~ 186 (407)
T PF04625_consen 175 APPNPDFFAQLQ 186 (407)
T ss_pred CCCCHHHHHHHH
Confidence 344556664443
No 470
>PRK10869 recombination and repair protein; Provisional
Probab=29.52 E-value=1.1e+03 Score=28.46 Aligned_cols=82 Identities=10% Similarity=0.131 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchH
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dv 295 (790)
+.++|.....|++.-+.---...++...++..+..+..+.+.. +.+..++++...++..-..+..+|-.....-...+
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e--~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l 375 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQE--DDLETLALAVEKHHQQALETAQKLHQSRQRYAKEL 375 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333333333333333333333333321 12334455555555444555555555555555555
Q ss_pred HHHH
Q 003863 296 EELA 299 (790)
Q Consensus 296 EELv 299 (790)
++.|
T Consensus 376 ~~~v 379 (553)
T PRK10869 376 AQLI 379 (553)
T ss_pred HHHH
Confidence 5555
No 471
>PRK12704 phosphodiesterase; Provisional
Probab=29.36 E-value=7.6e+02 Score=29.59 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003863 723 KLAKKYMRRVAME 735 (790)
Q Consensus 723 ~LA~~ymkRv~~E 735 (790)
.||+.--+++-.|
T Consensus 486 ~la~~i~~~ie~~ 498 (520)
T PRK12704 486 RLARDIAKKIEEE 498 (520)
T ss_pred HHHHHHHHHHHHh
Confidence 3444333333333
No 472
>PRK14151 heat shock protein GrpE; Provisional
Probab=28.82 E-value=4.6e+02 Score=27.12 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=51.4
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHh-----hhhHHHHHHHHhhhHHHhhhHHH
Q 003863 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAK-----KIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 118 ~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k-----~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
....++..+|..|+..+.+|+++-.++..++.-| |.-+. +.++...-..+ --=+|-|.+-+.....+...+..
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~ 99 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKP 99 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHH
Confidence 3446678899999999999999999999999999 22222 22222221111 12456666666555444444555
Q ss_pred HHHHHHHHHHH
Q 003863 191 QLAALSVILER 201 (790)
Q Consensus 191 qv~e~~~~~~q 201 (790)
.+.....+.++
T Consensus 100 ~~~Gv~mi~k~ 110 (176)
T PRK14151 100 MREGVELTLKM 110 (176)
T ss_pred HHHHHHHHHHH
Confidence 44455455444
No 473
>PRK14154 heat shock protein GrpE; Provisional
Probab=28.58 E-value=5.8e+02 Score=27.24 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=51.2
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhh-----hHHHHHHHHhhhHHHhhhH
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKI-----ENDEIVRRVGMLEDEKTSL 188 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~-----Ei~~L~~kI~sLeaE~~rL 188 (790)
..+....+..+|+.|+..+.+|+++=.++.+++.-| |.-+. +.++...-..+.+ =+|-|.+-+.....+...+
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~ 129 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQV 129 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhH
Confidence 345566788999999999999999999999999999 22222 3333222222221 4555655555433333344
Q ss_pred HHHHHHHHHHHHH
Q 003863 189 SEQLAALSVILER 201 (790)
Q Consensus 189 q~qv~e~~~~~~q 201 (790)
...+.....+.+|
T Consensus 130 ~~l~eGvemi~k~ 142 (208)
T PRK14154 130 KSMRDGMSLTLDL 142 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 474
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=28.54 E-value=3.2e+02 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863 260 SDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301 (790)
Q Consensus 260 s~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L 301 (790)
..-+..++++++ .+..||++|+.|-..--.||..|
T Consensus 159 ~~~l~~v~~Dl~-------~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 159 GKNLKSVREDLD-------TIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334667788888 77788888888877777777665
No 475
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.27 E-value=1e+03 Score=28.02 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHHhhhhhchHHHHH
Q 003863 284 VEGLQMSRLNEVEELA 299 (790)
Q Consensus 284 lE~f~~dR~~dvEELv 299 (790)
+|.-+..-+-++++|.
T Consensus 264 lEt~q~~leqeva~le 279 (499)
T COG4372 264 LETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555566666
No 476
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.96 E-value=4.9e+02 Score=24.49 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhchh-H----------------------------
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW-------------KRNPK-V---------------------------- 157 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-------------KEQE~-I---------------------------- 157 (790)
...+...+..|+..+..|+..-..|...+.+| ...+. |
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~v 80 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYV 80 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEE
Q ss_pred -HHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 158 -LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 158 -~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
+.++.-++.-...++.|...+..|+.....+++++........|
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 477
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=27.92 E-value=1.5e+02 Score=36.43 Aligned_cols=45 Identities=31% Similarity=0.329 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhh-hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKK-IENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 157 I~ELq~qL~~k~-~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
.++....++... .|+..|+..|..||.|++=|-.+++.....+..
T Consensus 20 l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~r 65 (654)
T PF09798_consen 20 LKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKRR 65 (654)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 445555555544 499999999999999999999999988877664
No 478
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.86 E-value=4e+02 Score=27.06 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 167 KKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 167 k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
...|+..|+.+|...+.+.+.|+.|....
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777766666666666666543
No 479
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.82 E-value=1.3e+03 Score=29.44 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred cCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHH-------HHHHHhhhHHHhh
Q 003863 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDE-------IVRRVGMLEDEKT 186 (790)
Q Consensus 116 ~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~-------L~~kI~sLeaE~~ 186 (790)
..+.+.|+.-||..|+++=-.||-.=+.....+.-+ ..+|. ++.+++|-.....=.++ |...-...+.|..
T Consensus 418 k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~ 497 (861)
T PF15254_consen 418 KTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETT 497 (861)
T ss_pred ccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHH---Hhhhhhhhccc-ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 187 SLSEQLAALSVILER---KNDNKNAINMG-SSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 187 rLq~qv~e~~~~~~q---~ee~~~~~~e~-e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
++.=+|.+.+.-.+. +=|++..+..| .-.|+-=+.||.-||-.+..||.-+..|..-|.
T Consensus 498 rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls 560 (861)
T PF15254_consen 498 RIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLS 560 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 480
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=1.2e+03 Score=28.61 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------hhchh--HHHHHHHHHHhhh-----
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW------------------------KRNPK--VLELERELEAKKI----- 169 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy------------------------KEQE~--I~ELq~qL~~k~~----- 169 (790)
..+..|...|++.|.-||..+..-+..|+.| -||-. +..+++||+-...
T Consensus 334 e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 334 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q ss_pred --------hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh----hhhhcccc--------cchHhHHHHHHHHHHH
Q 003863 170 --------ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN----KNAINMGS--------SSSQNLEMEVVELRRL 229 (790)
Q Consensus 170 --------Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~----~~~~~e~e--------~~~~~LE~Ev~ELRr~ 229 (790)
.|.-|...++-.+.+-..-|+.|.+.+-+.+|.+.. -++-.+++ ++-+..-.+++|+...
T Consensus 414 r~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~ 493 (654)
T KOG4809|consen 414 RMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKN 493 (654)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863 230 NKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301 (790)
Q Consensus 230 NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L 301 (790)
...|..=.++--.-++..+... |+++++.|+.+--.|..--..+..-+....|-=.||
T Consensus 494 aq~lee~rrred~~~d~sqhlq--------------~eel~~alektkQel~~tkarl~stqqslaEke~HL 551 (654)
T KOG4809|consen 494 AQLLEEVRRREDSMADNSQHLQ--------------IEELMNALEKTKQELDATKARLASTQQSLAEKEAHL 551 (654)
T ss_pred HHHHHHHHHHHhhhcchHHHHH--------------HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHH
No 481
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=27.70 E-value=2.2e+02 Score=33.70 Aligned_cols=117 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred cchhhhhhcccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccchhHHHHHHhhcccc
Q 003863 459 ASVLEVEKRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKRD 538 (790)
Q Consensus 459 l~~~~Vekra~rvP~PPP~ps~~~~~~~~~~~~~~vPpPpp~p~pPPPPPPP~~l~Rs~t~kv~RsPevvelYrsL~~r~ 538 (790)
++...+-...+..+.-+ -++..++.+.+..+..+.|..++-..|-.++--+.+...++... -=-+.+||.||--|.
T Consensus 338 ~~~~~~L~~~~~~~~r~-~s~~r~~sgSp~t~~~s~~~~~~s~~~~~~~kk~d~~~~~~~~s---egVLAnFFNSLLsKk 413 (472)
T PF05783_consen 338 MKQQSLLSKAPPAPGRG-ESPPRSQSGSPRTPGKSSPANVGSASPQSSSKKPDPNVKGGSPS---EGVLANFFNSLLSKK 413 (472)
T ss_pred HHHHHHHhcccccccCC-CCCCCCccccccccCCCCCCCccccCccccccCCCCCCCCCccc---hHHHHHHHHHHhcCC
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhhHhhhccchhhHHHHHHHhhhhH
Q 003863 539 SRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGE 584 (790)
Q Consensus 539 ~~~~~s~~g~~~~~~~a~~r~~mi~Ei~nRS~~l~aIk~dv~~~~~ 584 (790)
+...++.++.+.++......++++.--.+.. +..||+...+
T Consensus 414 s~Sp~s~~~~~~~~~~~s~~~~~~~~~~~~~-----~~~d~~~ELd 454 (472)
T PF05783_consen 414 SGSPGSPGTGPTASSSSSNGQGSLKKSGQKP-----VRTDAQAELD 454 (472)
T ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccccc-----cchHHHHHHH
No 482
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=27.66 E-value=92 Score=34.38 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 003863 465 EKRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRA 524 (790)
Q Consensus 465 ekra~rvP~PPP~ps~~~~~~~~~~~~~~vPpPpp~p~pPPPPPPP~~l~Rs~t~kv~Rs 524 (790)
.|-++..|+|+.+--.-.++.+........|+..|.|+|++++||+-+.....+..+..+
T Consensus 137 kkeal~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 196 (274)
T PLN02983 137 KKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSS 196 (274)
T ss_pred cccccCCCCCCCceEEecCCCcccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcCC
No 483
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.58 E-value=5e+02 Score=25.01 Aligned_cols=95 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-----------------------------------
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER----------------------------------- 201 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q----------------------------------- 201 (790)
+.+|..+++.-..++..|..++..|++...++..-+.....+.+.
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~ 87 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYS 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEE
Q ss_pred -HhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 202 -KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 202 -~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
+.........++.++..|+..+..|......++.+...+...+.....+.
T Consensus 88 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 88 AEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 484
>PRK11519 tyrosine kinase; Provisional
Probab=27.58 E-value=9.6e+02 Score=29.59 Aligned_cols=130 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHH------HHHHHhhhhhhhcccccchHhHHHHHHHHHHH----
Q 003863 160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV------ILERKNDNKNAINMGSSSSQNLEMEVVELRRL---- 229 (790)
Q Consensus 160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~------~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~---- 229 (790)
++........-+++|+.++..++.+-+..+..+.++.. +..+-+.....-.+++..+.+|+.+..+|...
T Consensus 258 ~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~ 337 (719)
T PRK11519 258 IERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKE 337 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred ---HHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 230 ---NKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 230 ---NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
...|+.+...|..+++..+.++..+.. .|.+.. .++.|++-.+..=+.|+.+.+......
T Consensus 338 hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~-~e~~~~-~L~Re~~~~~~lY~~lL~r~~e~~i~~ 400 (719)
T PRK11519 338 HPAYRTLLEKRKALEDEKAKLNGRVTAMPK-TQQEIV-RLTRDVESGQQVYMQLLNKQQELKITE 400 (719)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHh
No 485
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.45 E-value=9.4e+02 Score=27.20 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHH-hhhHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 003863 130 LRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRV-GMLEDEKTSLSEQLAALSVILERKNDNKN 207 (790)
Q Consensus 130 LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI-~sLeaE~~rLq~qv~e~~~~~~q~ee~~~ 207 (790)
+..+...|.+-+..|..-...|.+.-- |..|++++..-..++...-..+ .+++.+...++.++.++....++.+....
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003863 208 AINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (790)
Q Consensus 208 ~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~ 252 (790)
.- ...+.+...|.|...-.+..-..|..|++.++....
T Consensus 336 ~l-------~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~ 373 (444)
T TIGR03017 336 EL-------NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQ 373 (444)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.40 E-value=4.8e+02 Score=29.19 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhccc-ccchHhHHHHHHHHHHHHHHHHHHHhhh
Q 003863 162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMG-SSSSQNLEMEVVELRRLNKELQMEKRNL 240 (790)
Q Consensus 162 ~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~-e~~~~~LE~Ev~ELRr~NkeLQ~EkreL 240 (790)
..|.....+|+.|+.++..++.+-..-+.++.+.......+++....+... ...-..++.+..++.....+.+.+..+-
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a 87 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEA 87 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh
Q 003863 241 ACKFSSMENQLTSLAKASESDIISKIKAEALVLR 274 (790)
Q Consensus 241 ~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr 274 (790)
.=-|+.|+..+..+.+ .+++.||
T Consensus 88 ~P~L~~A~~al~~l~k-----------~di~Eik 110 (344)
T PF12777_consen 88 EPALEEAQEALKSLDK-----------SDISEIK 110 (344)
T ss_dssp HHHHHHHHHHHHCS-H-----------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCH-----------HHHHHHH
No 487
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=27.20 E-value=61 Score=28.29 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
.+|.-+.+.|.-||.| =...+..|=.||.-|++.|++|+++
T Consensus 3 ~qv~s~e~~i~FLq~e---------------------------H~~tL~~LH~EIe~Lq~~~~dL~~k 43 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQE---------------------------HAQTLKGLHAEIERLQKRNKDLTFK 43 (60)
T ss_pred HHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHhcccccee
No 488
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.16 E-value=1.1e+03 Score=28.99 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHh
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR 238 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ekr 238 (790)
.++........-+++|+.++..++.+-...+.++.++..-.. +-+++.|...+-....+|+.|..
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~---------------~~d~~~ea~~~l~~~~~l~~ql~ 321 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD---------------SVDLNLEAKAVLEQIVNVDNQLN 321 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------CCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHH--------HHhhhhhchHHHHHHHHHhhHHHhh
Q 003863 239 NLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE--------GLQMSRLNEVEELAYLRWVNSCLRD 310 (790)
Q Consensus 239 eL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE--------~f~~dR~~dvEELv~LR~~NacLR~ 310 (790)
++..++......+ -.+.-.|..+++....|+..-+.+..++. -.+..|+-++.+-+|.-+++ -+.
T Consensus 322 ~l~~~~~~l~~~~-----~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~--r~~ 394 (726)
T PRK09841 322 ELTFREAEISQLY-----KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLN--RQQ 394 (726)
T ss_pred HHHHHHHHHHHHh-----cccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred hhh
Q 003863 311 ELQ 313 (790)
Q Consensus 311 EL~ 313 (790)
|+.
T Consensus 395 e~~ 397 (726)
T PRK09841 395 ELS 397 (726)
T ss_pred HHH
No 489
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.09 E-value=2.2e+02 Score=27.46 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
+..|+.+|..-..++..|+..|..|-+||..|+-+...+-....+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=26.89 E-value=6.8e+02 Score=25.42 Aligned_cols=91 Identities=5% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH-hhhh
Q 003863 133 LLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK-NDNK 206 (790)
Q Consensus 133 ~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~-ee~~ 206 (790)
....|++|+...+.+|.+- +|-+. ..+-+.+|.....|... -|..-+.+...+.++..+-+....+. .+..
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~---Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A 105 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ---MIEESNEVTKKIIQEKTKEIEEFLEHKKSDA 105 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcccc--cchHhHHHHHHHH
Q 003863 207 NAINMGS--SSSQNLEMEVVEL 226 (790)
Q Consensus 207 ~~~~e~e--~~~~~LE~Ev~EL 226 (790)
+.+.+.+ ..+.+|-.||..|
T Consensus 106 ~~~Ie~Ek~~Al~elr~eva~L 127 (154)
T PRK06568 106 IQLIQNQKSTASKELQDEFCDE 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 491
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.86 E-value=2.7e+02 Score=24.39 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 179 GMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 179 ~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
+.|++|..--|.---++.+++.-...+..+=.+.+.+.++|+.||..|+....+|+..
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 492
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=26.65 E-value=3.7e+02 Score=30.60 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
+..++.+|...-..|+..-.+|..+|.+| .+.|. +...--=|-.|++-|..|...+..++......+.+...
T Consensus 142 l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~~~~~~ 219 (342)
T PF06632_consen 142 LQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPKQERED 219 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchhhhhcc
No 493
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.65 E-value=1.6e+03 Score=29.68 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-------HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH-
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL- 192 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-------I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv- 192 (790)
+......+.|+..+......-..++.+|..++.... ..+|+.++.....++..+.......++.-+.+...+
T Consensus 61 ~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~ 140 (1109)
T PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLS 140 (1109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q ss_pred ------HHHHHHHHHHhhhhhh-----hcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhh
Q 003863 193 ------AALSVILERKNDNKNA-----INMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD 261 (790)
Q Consensus 193 ------~e~~~~~~q~ee~~~~-----~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~ 261 (790)
.+...-..+-+..+.. +.-.+.....|..|..-|...|..|+.+.-....+.+.++.+...+....+--
T Consensus 141 ~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l 220 (1109)
T PRK10929 141 QLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQL 220 (1109)
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHh-hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhh
Q 003863 262 --IISKIKAEALVLR-HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDEL 312 (790)
Q Consensus 262 --~va~~~eE~~~Lr-~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL 312 (790)
.+..+++.++.-| .+.|...++.+.....-.+.-.-+...==+|..|-.+|
T Consensus 221 ~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L 274 (1109)
T PRK10929 221 DAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQAL 274 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
No 494
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=26.59 E-value=1e+02 Score=30.98 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 003863 468 VLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAP 510 (790)
Q Consensus 468 a~rvP~PPP~ps~~~~~~~~~~~~~~vPpPpp~p~pPPPPPPP 510 (790)
.+.-|.|++....+.++.++.......+..|||.++.|.+|||
T Consensus 136 ~~~yp~~~~~~y~~~pp~~~~~~~~~~~~~Ppp~~~~~~~pp~ 178 (179)
T PF13908_consen 136 PPSYPSPQYQGYQPPPPQPGQPYPPYPPQYPPPYPAQPQGPPP 178 (179)
T ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 495
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.55 E-value=1.5e+03 Score=29.11 Aligned_cols=197 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccc-----cccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhh
Q 003863 99 SMNPAQVHPNSYQ-----THRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKK 168 (790)
Q Consensus 99 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~ 168 (790)
|.++-|-.-+..| .+|++..---.+..-++.||.+++.++.++.-+--.++.- .+|+. .--|+..++.+-
T Consensus 585 GQ~~DPt~R~EKDDR~kl~DRS~Y~LG~tN~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~f 664 (1104)
T COG4913 585 GQTGDPTTRWEKDDRRKLGDRSTYRLGSTNDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNF 664 (1104)
T ss_pred cccCCCCccccccchhhcCccceeeecCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcch
Q ss_pred h--hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 169 I--ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 169 ~--Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
+ .+..+.++|..|+.+-++|+.--.....+.. .+-.-+--+..|.|..+.--+|--++...|..
T Consensus 665 a~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~--------------~l~aaQT~~~vler~~~~~~~e~~~~k~~lkr 730 (1104)
T COG4913 665 ASIDLPSAQRQIAELQARLERLTHTQSDIAIAKA--------------ALDAAQTRQKVLERQYQQEVTECAGLKKDLKR 730 (1104)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH-HHHHhhHHHhh
Q 003863 247 MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YLRWVNSCLRD 310 (790)
Q Consensus 247 ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv-~LR~~NacLR~ 310 (790)
|+.....+-+....+|...+..+.-.+=-.+ .+..+.......+-..-+.|. .+--+|+-||.
T Consensus 731 A~~~~~k~~si~~~~~t~~~q~~~~a~f~q~-a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrr 794 (1104)
T COG4913 731 AAMLSRKVHSIAKQGMTGALQALGAAHFPQV-APEQHDDIVDIERIEHRRQLQKRIDAVNARLRR 794 (1104)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhhhhhh-ChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHH
No 496
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=3.3e+02 Score=33.34 Aligned_cols=103 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHhh----hhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 003863 142 FKLQAELSEW----KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSS 215 (790)
Q Consensus 142 ~kLE~eLlEy----KEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~ 215 (790)
.++|++.+|. .+-++ +.+|+.+|.-.+..-.+|+-++..+.-+-.|-...-.......+.-|+..+-- +.-
T Consensus 440 ~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S---~~L 516 (852)
T KOG4787|consen 440 RKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLS---EKL 516 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHH---HHH
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~a 247 (790)
-.+|-.|+++++..-+++...+.+|...+.++
T Consensus 517 s~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t 548 (852)
T KOG4787|consen 517 AIDLVSELEGKIPTIDEIEQCCEVLAAVETQT 548 (852)
T ss_pred HHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhH
No 497
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.26 E-value=73 Score=27.80 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003863 126 ELDSLRSLLQESKEREFKLQAE 147 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE~e 147 (790)
|++-||+.|.+|++|-..||.|
T Consensus 15 EVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 498
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.17 E-value=9e+02 Score=28.82 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----H
Q 003863 127 LDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER----K 202 (790)
Q Consensus 127 I~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q----~ 202 (790)
++.|...++.|+.= +-..+.++.++ +.+...+|+.-..++..+...+..=..+-..+++.+..+..+.++ -
T Consensus 250 ~~~l~~~~~~l~~~---~d~~~~~~~~~--l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 250 LEGLGEAQLALASV---IDGSLRELAEQ--VGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHh---hhHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCH
Q ss_pred hhhhhhhcccc---cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863 203 NDNKNAINMGS---SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (790)
Q Consensus 203 ee~~~~~~e~e---~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~ 253 (790)
++....-.+++ ..+...+.++.+|+.....++.+..+++.+|.....+++.
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=26.16 E-value=1.1e+02 Score=37.76 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccchhHHHHHHhhccccCCCCCCCC
Q 003863 467 RVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNG 546 (790)
Q Consensus 467 ra~rvP~PPP~ps~~~~~~~~~~~~~~vPpPpp~p~pPPPPPPP~~l~Rs~t~kv~RsPevvelYrsL~~r~~~~~~s~~ 546 (790)
++..++.|||.|..+.++++...|.+.+++.|+.+.|-||--|+..+- --++=+-+++|++--.....-.
T Consensus 10 ~~~~ee~~~~apaaaa~~pa~~apAp~~aaApaaa~~~~~D~~f~A~~----------a~~~LvA~~~K~~iDqi~~~ds 79 (866)
T COG4982 10 EPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEPFKASD----------ALHALVALKLKKRIDQIEALDS 79 (866)
T ss_pred CccccccCCCCCccccCCccccCCCCccccCcccCCCCCccCCCCHHH----------HHHHHHHHHhhcChhhcccccc
Q ss_pred CCCCCCCchhhhhhhhHhhhc
Q 003863 547 GVCEAPNVANVRSSMIGEIEN 567 (790)
Q Consensus 547 g~~~~~~~a~~r~~mi~Ei~n 567 (790)
-.+-...++.-|+.||+.+.+
T Consensus 80 ie~lv~G~SsrrNqlL~DLg~ 100 (866)
T COG4982 80 IEDLVGGKSSRRNQLLGDLGK 100 (866)
T ss_pred HHHhhcchhhhHHHHHHHHHh
No 500
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.07 E-value=7.8e+02 Score=30.66 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhccc-----------ccchHhHHHHHHHHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMG-----------SSSSQNLEMEVVELR 227 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~-----------e~~~~~LE~Ev~ELR 227 (790)
++|.+|..-.+--+-|..+|+-|-++-+.--+.+.++..+.+.+++.+...+|. |..-=+|-.||-||+
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLK 187 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELK 187 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh---hhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863 228 RLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR---HTNEDLSKQVEGLQMSRLNEVEELAYL 301 (790)
Q Consensus 228 r~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr---~~NE~L~~QlE~f~~dR~~dvEELv~L 301 (790)
-..-.|+.|.+|--.|+-.+|..+-.+...-=.++|..-.+=-.+|+ .+=.-|.+|+..-+.+-......||..
T Consensus 188 LkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~ 264 (861)
T KOG1899|consen 188 LKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQR 264 (861)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHH
Done!