Query 003863
Match_columns 790
No_of_seqs 257 out of 261
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 96.2 0.11 3.8E-06 52.1 15.6 70 121-190 6-77 (189)
2 2dfs_A Myosin-5A; myosin-V, in 96.1 0.064 2.2E-06 65.5 16.0 61 213-288 983-1043(1080)
3 3na7_A HP0958; flagellar bioge 96.1 0.19 6.4E-06 51.6 17.1 33 216-248 92-124 (256)
4 1i84_S Smooth muscle myosin he 96.0 0.014 4.6E-07 71.6 9.6 73 123-195 855-932 (1184)
5 1c1g_A Tropomyosin; contractIl 95.9 1.3 4.3E-05 42.6 23.0 28 124-151 12-39 (284)
6 3na7_A HP0958; flagellar bioge 95.4 0.96 3.3E-05 46.3 18.8 95 157-251 41-141 (256)
7 1i84_S Smooth muscle myosin he 95.1 0.04 1.4E-06 67.5 9.1 33 119-151 858-890 (1184)
8 3iot_A Maltose-binding protein 95.0 0.0041 1.4E-07 66.7 0.0 20 351-370 268-288 (449)
9 3vkg_A Dynein heavy chain, cyt 95.0 0.71 2.4E-05 62.2 20.5 68 114-184 1888-1970(3245)
10 2dfs_A Myosin-5A; myosin-V, in 94.7 0.24 8.2E-06 60.6 14.0 26 170-195 978-1003(1080)
11 2ocy_A RAB guanine nucleotide 92.1 6.3 0.00022 38.4 16.3 42 260-301 100-141 (154)
12 3o0z_A RHO-associated protein 92.0 1.6 5.6E-05 43.0 12.4 94 159-252 38-135 (168)
13 2v71_A Nuclear distribution pr 91.7 3.9 0.00013 41.1 14.9 149 123-288 22-181 (189)
14 3oja_B Anopheles plasmodium-re 91.1 0.81 2.8E-05 50.9 10.4 27 124-150 455-481 (597)
15 3oja_B Anopheles plasmodium-re 90.5 2.5 8.4E-05 47.1 13.6 27 170-196 457-483 (597)
16 2fxo_A Myosin heavy chain, car 88.9 4.5 0.00015 37.7 11.9 83 157-239 22-108 (129)
17 3vkg_A Dynein heavy chain, cyt 87.9 16 0.00054 49.8 20.2 68 214-293 2035-2102(3245)
18 2fxo_A Myosin heavy chain, car 87.5 14 0.00047 34.4 14.3 75 157-248 50-124 (129)
19 3oja_A Leucine-rich immune mol 86.5 4.1 0.00014 44.5 11.7 28 221-248 442-469 (487)
20 3o0z_A RHO-associated protein 85.1 20 0.0007 35.4 14.6 88 214-301 41-130 (168)
21 3swk_A Vimentin; cytoskeleton, 84.6 4.5 0.00015 35.6 8.8 71 170-248 1-76 (86)
22 3ol1_A Vimentin; structural ge 82.2 12 0.00042 34.5 11.2 30 122-151 17-46 (119)
23 3swk_A Vimentin; cytoskeleton, 82.2 2.8 9.5E-05 37.0 6.5 81 222-302 1-83 (86)
24 3q8t_A Beclin-1; autophagy, AT 81.5 24 0.00083 31.5 12.5 88 125-253 4-92 (96)
25 2zqm_A Prefoldin beta subunit 81.3 4.4 0.00015 36.2 7.7 41 161-201 5-45 (117)
26 3s9g_A Protein hexim1; cyclin 81.3 4 0.00014 37.2 7.2 52 170-238 38-89 (104)
27 3qh9_A Liprin-beta-2; coiled-c 80.3 5.9 0.0002 34.9 7.7 56 121-178 22-77 (81)
28 2efr_A General control protein 79.7 47 0.0016 32.3 16.8 89 160-251 26-121 (155)
29 3tnu_A Keratin, type I cytoske 79.4 12 0.00041 34.8 10.2 83 214-304 45-128 (131)
30 3ol1_A Vimentin; structural ge 78.9 11 0.00038 34.8 9.7 87 219-305 18-106 (119)
31 2v66_B Nuclear distribution pr 78.7 6.9 0.00024 36.3 8.1 61 220-288 2-62 (111)
32 3tnu_B Keratin, type II cytosk 78.4 12 0.00041 34.7 9.8 83 214-304 43-126 (129)
33 3hnw_A Uncharacterized protein 77.8 13 0.00044 35.4 10.0 28 163-190 104-131 (138)
34 1go4_E MAD1 (mitotic arrest de 77.2 2.6 8.9E-05 38.5 4.8 33 169-201 12-44 (100)
35 3u1c_A Tropomyosin alpha-1 cha 76.9 16 0.00053 32.9 9.8 71 171-251 4-74 (101)
36 3s4r_A Vimentin; alpha-helix, 76.7 17 0.0006 32.3 9.9 68 168-248 15-83 (93)
37 3u59_A Tropomyosin beta chain; 76.3 17 0.00057 32.5 9.8 71 171-251 4-74 (101)
38 2no2_A HIP-I, huntingtin-inter 75.7 24 0.00083 32.2 10.8 73 124-196 14-95 (107)
39 3i00_A HIP-I, huntingtin-inter 75.1 12 0.00043 34.9 8.9 60 168-240 14-80 (120)
40 1go4_E MAD1 (mitotic arrest de 74.7 2.6 9E-05 38.4 4.1 74 216-289 14-96 (100)
41 2e7s_A RAB guanine nucleotide 74.4 4.4 0.00015 38.8 5.7 111 122-287 5-115 (135)
42 3u1c_A Tropomyosin alpha-1 cha 74.3 35 0.0012 30.6 11.4 68 157-234 32-99 (101)
43 3hnw_A Uncharacterized protein 74.0 12 0.00042 35.5 8.7 28 217-244 106-133 (138)
44 1fxk_A Prefoldin; archaeal pro 73.7 14 0.00047 32.5 8.5 36 165-200 4-39 (107)
45 3i00_A HIP-I, huntingtin-inter 71.3 13 0.00044 34.8 8.0 70 120-194 10-79 (120)
46 3a7p_A Autophagy protein 16; c 71.0 35 0.0012 33.3 11.1 70 173-245 65-134 (152)
47 2e7s_A RAB guanine nucleotide 71.0 6.3 0.00021 37.7 5.9 65 124-192 14-83 (135)
48 2eqb_B RAB guanine nucleotide 70.9 23 0.00079 32.2 9.3 27 260-286 68-94 (97)
49 1ic2_A Tropomyosin alpha chain 69.5 18 0.00063 31.1 8.1 71 172-252 2-72 (81)
50 4i8n_A Tyrosine-protein phosph 69.3 1.1 3.6E-05 48.2 0.3 9 435-443 287-295 (354)
51 3s4r_A Vimentin; alpha-helix, 69.2 16 0.00055 32.5 7.9 24 131-154 22-45 (93)
52 3ghg_A Fibrinogen alpha chain; 65.6 83 0.0028 36.1 14.3 25 121-145 60-84 (562)
53 4gkw_A Spindle assembly abnorm 64.7 1E+02 0.0035 29.6 17.4 72 125-196 11-87 (167)
54 3a7p_A Autophagy protein 16; c 64.2 25 0.00087 34.2 8.7 58 124-191 67-125 (152)
55 2jee_A YIIU; FTSZ, septum, coi 63.2 55 0.0019 28.9 9.8 33 160-192 11-43 (81)
56 2ocy_A RAB guanine nucleotide 63.2 1.1E+02 0.0039 29.7 14.3 24 122-145 17-40 (154)
57 2v4h_A NF-kappa-B essential mo 61.5 36 0.0012 31.6 8.7 15 125-139 24-38 (110)
58 1l8d_A DNA double-strand break 60.1 67 0.0023 28.4 10.2 37 157-193 66-102 (112)
59 3tnu_B Keratin, type II cytosk 60.1 38 0.0013 31.3 8.9 65 168-232 35-100 (129)
60 4h22_A Leucine-rich repeat fli 57.8 20 0.00067 33.0 6.3 43 152-194 40-83 (103)
61 2q6q_A Spindle POLE BODY compo 57.3 53 0.0018 28.3 8.3 28 158-185 6-33 (74)
62 1gd2_E Transcription factor PA 57.2 13 0.00046 31.7 4.8 36 213-248 28-63 (70)
63 1gk4_A Vimentin; intermediate 56.9 72 0.0025 27.6 9.5 76 222-305 2-78 (84)
64 3a7o_A Autophagy protein 16; c 56.1 35 0.0012 29.6 7.1 38 157-194 34-71 (75)
65 2yy0_A C-MYC-binding protein; 56.0 12 0.00042 30.3 4.2 33 214-246 19-51 (53)
66 2h8h_A Proto-oncogene tyrosine 55.6 2.4 8.1E-05 47.0 -0.1 12 598-609 222-233 (535)
67 1deq_A Fibrinogen (alpha chain 55.6 38 0.0013 37.3 9.1 86 211-298 64-150 (390)
68 3u59_A Tropomyosin beta chain; 55.5 1.1E+02 0.0038 27.1 11.8 67 157-233 32-98 (101)
69 1f5n_A Interferon-induced guan 55.4 44 0.0015 38.5 10.2 16 214-229 567-582 (592)
70 1l8d_A DNA double-strand break 54.5 78 0.0027 27.9 9.7 72 216-287 5-90 (112)
71 3tnu_A Keratin, type I cytoske 54.3 38 0.0013 31.5 7.8 65 168-232 37-102 (131)
72 4i8n_A Tyrosine-protein phosph 54.1 2.7 9.1E-05 45.1 0.0 8 266-273 37-44 (354)
73 2v66_B Nuclear distribution pr 53.8 1.4E+02 0.0047 27.7 11.7 32 217-248 38-69 (111)
74 3nmd_A CGMP dependent protein 53.6 21 0.00071 30.9 5.4 38 144-181 28-66 (72)
75 4gkw_A Spindle assembly abnorm 53.6 1.6E+02 0.0055 28.3 12.4 25 158-182 101-125 (167)
76 2efr_A General control protein 53.3 1.7E+02 0.0057 28.5 18.5 92 157-251 2-93 (155)
77 3bas_A Myosin heavy chain, str 52.8 34 0.0012 30.0 6.8 35 157-191 23-57 (89)
78 3mq9_A Bone marrow stromal ant 52.8 1E+02 0.0034 33.4 12.1 26 214-239 443-468 (471)
79 4evy_A Aminoglycoside N(6')-ac 52.3 4.4 0.00015 36.0 1.1 12 522-533 30-41 (166)
80 2zqm_A Prefoldin beta subunit 52.2 1.1E+02 0.0038 26.9 10.4 38 157-194 72-109 (117)
81 1ic2_A Tropomyosin alpha chain 52.2 1.1E+02 0.0038 26.2 9.9 45 157-201 29-73 (81)
82 3oja_A Leucine-rich immune mol 52.0 1.6E+02 0.0056 31.9 13.7 29 214-242 456-484 (487)
83 3icg_A Endoglucanase D; cellul 51.7 3.4 0.00012 45.9 0.4 15 125-139 83-97 (515)
84 2ke4_A CDC42-interacting prote 49.0 53 0.0018 29.6 7.6 28 169-196 62-89 (98)
85 1deq_A Fibrinogen (alpha chain 48.8 58 0.002 35.9 9.2 19 121-139 63-81 (390)
86 3eg5_B Protein diaphanous homo 48.5 16 0.00056 39.5 5.0 44 269-315 269-313 (383)
87 1kd8_A GABH AIV, GCN4 acid bas 47.9 22 0.00077 27.0 4.1 33 214-246 1-33 (36)
88 2oqq_A Transcription factor HY 47.7 42 0.0014 26.3 5.7 34 157-190 5-38 (42)
89 3mq7_A Bone marrow stromal ant 47.5 1.8E+02 0.0063 27.3 11.8 24 213-236 84-107 (121)
90 2bnx_A Diaphanous protein homo 46.9 18 0.0006 39.3 5.0 44 269-315 207-251 (386)
91 2pbd_V VAsp, vasodilator-stimu 46.0 7.8 0.00027 30.5 1.4 8 519-526 31-38 (43)
92 1gd2_E Transcription factor PA 45.3 14 0.00049 31.6 3.1 37 152-188 32-69 (70)
93 1x8y_A Lamin A/C; structural p 45.0 52 0.0018 28.7 6.8 76 222-305 4-80 (86)
94 1ci6_A Transcription factor AT 44.9 44 0.0015 27.6 5.9 37 157-193 25-61 (63)
95 3mq7_A Bone marrow stromal ant 44.8 1E+02 0.0035 28.9 8.9 19 229-247 72-90 (121)
96 3mov_A Lamin-B1; LMNB1, B-type 44.7 34 0.0012 30.6 5.7 75 222-304 13-88 (95)
97 2i1j_A Moesin; FERM, coiled-co 43.8 56 0.0019 37.4 8.6 84 171-254 337-424 (575)
98 2f31_A Diaphanous protein homo 43.7 14 0.00049 36.9 3.4 31 268-298 202-233 (233)
99 1x79_B RAB GTPase binding effe 43.7 1.2E+02 0.0042 28.1 9.2 14 231-244 94-107 (112)
100 3mq9_A Bone marrow stromal ant 43.3 2.5E+02 0.0084 30.3 13.3 14 214-227 457-470 (471)
101 2i1j_A Moesin; FERM, coiled-co 43.2 30 0.001 39.5 6.4 19 124-142 299-317 (575)
102 1kd8_B GABH BLL, GCN4 acid bas 42.8 34 0.0012 26.0 4.4 32 214-245 1-32 (36)
103 1fxk_A Prefoldin; archaeal pro 42.7 1.5E+02 0.0051 25.7 9.5 37 157-193 67-103 (107)
104 3ghg_A Fibrinogen alpha chain; 42.2 57 0.002 37.4 8.1 95 213-308 63-158 (562)
105 1jnm_A Proto-oncogene C-JUN; B 42.0 20 0.00069 29.3 3.5 37 157-193 24-60 (62)
106 1dh3_A Transcription factor CR 41.7 26 0.00088 28.4 4.0 31 214-244 22-52 (55)
107 3nmd_A CGMP dependent protein 41.5 53 0.0018 28.4 6.1 28 157-184 21-48 (72)
108 1m1j_B Fibrinogen beta chain; 40.1 2.2E+02 0.0077 32.0 12.5 27 214-240 168-194 (464)
109 2wt7_A Proto-oncogene protein 38.8 47 0.0016 27.3 5.2 35 157-191 25-59 (63)
110 2lf0_A Uncharacterized protein 38.7 51 0.0017 31.0 5.9 50 236-292 11-60 (123)
111 1m1j_C Fibrinogen gamma chain; 38.3 72 0.0025 35.3 8.1 25 170-194 92-116 (409)
112 1x79_B RAB GTPase binding effe 37.6 1.6E+02 0.0055 27.3 9.0 33 214-246 52-84 (112)
113 1t2k_D Cyclic-AMP-dependent tr 37.2 57 0.002 26.5 5.4 35 157-191 24-58 (61)
114 1p9i_A Cortexillin I/GCN4 hybr 36.8 36 0.0012 24.6 3.5 26 172-197 2-27 (31)
115 2eqb_B RAB guanine nucleotide 36.4 2.4E+02 0.0083 25.6 9.8 24 125-148 12-35 (97)
116 3m91_A Proteasome-associated A 35.8 85 0.0029 25.4 6.1 32 220-251 8-39 (51)
117 1gmj_A ATPase inhibitor; coile 35.3 1.5E+02 0.0051 26.3 8.0 57 136-195 21-77 (84)
118 2akf_A Coronin-1A; coiled coil 35.1 47 0.0016 24.3 4.0 25 123-147 4-28 (32)
119 2h57_A ADP-ribosylation factor 34.1 8.8 0.0003 35.3 0.1 8 530-537 37-44 (190)
120 1x8y_A Lamin A/C; structural p 32.1 1.7E+02 0.0057 25.5 7.9 23 170-192 29-51 (86)
121 4emc_A Monopolin complex subun 31.4 1.1E+02 0.0038 30.7 7.4 39 157-195 22-60 (190)
122 2dgc_A Protein (GCN4); basic d 31.1 42 0.0014 27.9 3.7 31 214-244 30-60 (63)
123 3m48_A General control protein 31.0 50 0.0017 24.7 3.6 27 216-242 2-28 (33)
124 1deb_A APC protein, adenomatou 30.9 2.1E+02 0.007 23.4 7.4 48 170-234 4-51 (54)
125 2oxj_A Hybrid alpha/beta pepti 29.9 71 0.0024 24.0 4.3 29 215-243 2-30 (34)
126 1wt6_A Myotonin-protein kinase 29.8 2.8E+02 0.0096 24.5 8.8 24 222-245 46-69 (81)
127 1lwu_C Fibrinogen gamma chain; 29.0 60 0.0021 34.9 5.4 23 157-179 28-50 (323)
128 3m9b_A Proteasome-associated A 28.8 71 0.0024 33.4 5.8 67 119-193 18-92 (251)
129 2lw1_A ABC transporter ATP-bin 28.3 2.4E+02 0.0082 24.4 8.3 60 123-182 20-83 (89)
130 1dh3_A Transcription factor CR 28.3 67 0.0023 26.0 4.4 28 169-196 22-49 (55)
131 2hy6_A General control protein 28.2 69 0.0024 24.1 3.9 29 214-242 1-29 (34)
132 2v4h_A NF-kappa-B essential mo 27.5 3.8E+02 0.013 24.9 10.0 25 159-183 35-59 (110)
133 1jnm_A Proto-oncogene C-JUN; B 27.3 61 0.0021 26.5 4.0 25 216-240 24-48 (62)
134 2yy0_A C-MYC-binding protein; 27.1 70 0.0024 25.9 4.2 31 221-251 19-49 (53)
135 3viq_B Mating-type switching p 26.7 1E+02 0.0035 27.4 5.5 64 224-290 4-70 (85)
136 2j76_E EIF-4B, EIF4B, eukaryot 25.6 15 0.00053 31.2 0.2 9 525-533 34-42 (100)
137 3cvf_A Homer-3, homer protein 25.6 1.4E+02 0.0048 26.2 6.1 66 218-302 3-68 (79)
138 2pmy_A RAS and EF-hand domain- 25.5 16 0.00053 30.4 0.2 11 525-535 27-37 (91)
139 3efg_A Protein SLYX homolog; x 25.4 1.5E+02 0.005 25.6 6.3 39 157-195 16-54 (78)
140 3u06_A Protein claret segregat 25.1 1.4E+02 0.0047 32.9 7.5 14 752-765 369-382 (412)
141 1uii_A Geminin; human, DNA rep 25.0 1.6E+02 0.0054 26.1 6.4 23 170-192 54-76 (83)
142 1gs9_A Apolipoprotein E, APOE4 24.7 4.8E+02 0.016 25.2 11.3 51 571-621 36-88 (165)
143 3s9g_A Protein hexim1; cyclin 24.5 1.6E+02 0.0053 27.0 6.4 21 265-285 69-89 (104)
144 4abm_A Charged multivesicular 23.8 2.3E+02 0.0079 24.5 7.2 27 125-151 6-32 (79)
145 3llu_A RAS-related GTP-binding 23.7 17 0.00057 33.9 0.0 6 607-612 116-121 (196)
146 1gk4_A Vimentin; intermediate 23.3 3.6E+02 0.012 23.2 10.5 14 126-139 2-15 (84)
147 1t2k_D Cyclic-AMP-dependent tr 22.6 1.1E+02 0.0037 24.8 4.7 29 213-241 28-56 (61)
148 4f61_I Stathmin-like domain R4 22.4 6.7E+02 0.023 26.0 17.5 24 128-151 45-68 (240)
149 2jee_A YIIU; FTSZ, septum, coi 22.2 4.1E+02 0.014 23.4 10.3 28 127-154 8-35 (81)
150 1uii_A Geminin; human, DNA rep 22.1 1.8E+02 0.0063 25.7 6.2 30 170-199 47-76 (83)
151 3jsv_C NF-kappa-B essential mo 22.1 3E+02 0.01 24.9 7.7 21 163-183 17-37 (94)
152 1zxa_A CGMP-dependent protein 22.1 57 0.0019 27.8 2.9 28 152-179 21-49 (67)
153 2r2v_A GCN4 leucine zipper; co 21.9 1.2E+02 0.0042 22.8 4.3 29 214-242 1-29 (34)
154 3sw1_A Sensory box protein; li 21.9 19 0.00065 30.9 0.0 7 529-535 25-31 (162)
155 1m1j_C Fibrinogen gamma chain; 21.7 3.5E+02 0.012 29.9 9.9 21 175-195 83-103 (409)
156 3qh9_A Liprin-beta-2; coiled-c 21.6 4.2E+02 0.014 23.4 8.8 57 129-194 23-79 (81)
157 4bas_A ADP-ribosylation factor 21.5 17 0.0006 33.2 -0.4 8 530-537 33-40 (199)
158 1s1c_X RHO-associated, coiled- 21.4 1.8E+02 0.0061 25.1 5.9 29 225-253 3-31 (71)
159 1m1j_B Fibrinogen beta chain; 21.2 3.5E+02 0.012 30.5 9.9 16 213-228 181-196 (464)
160 1pk8_A RAT synapsin I; ATP bin 21.2 20 0.00069 39.8 0.0 7 529-535 76-82 (422)
161 2p22_C Protein SRN2; endosome, 21.1 3.7E+02 0.013 26.7 9.1 39 262-305 129-169 (192)
162 3q8t_A Beclin-1; autophagy, AT 20.9 4.4E+02 0.015 23.4 10.4 37 214-250 11-47 (96)
163 3icg_A Endoglucanase D; cellul 20.4 25 0.00087 39.0 0.6 10 358-367 256-265 (515)
164 1m1j_A Fibrinogen alpha subuni 20.4 3.8E+02 0.013 30.4 9.7 51 143-193 104-156 (491)
165 2dgc_A Protein (GCN4); basic d 20.2 1E+02 0.0035 25.5 4.1 27 169-195 30-56 (63)
166 4etp_A Kinesin-like protein KA 20.1 2.3E+02 0.0079 30.9 8.0 14 752-765 384-397 (403)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.24 E-value=0.11 Score=52.11 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=47.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh--HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~--I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
.....||...|.....++.+=..|+.+|.+|.+-.. =.||+.+|......+..|..++..|..|...+.+
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999932222 2355555555555555555555555555444443
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.13 E-value=0.064 Score=65.52 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=42.0
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~ 288 (790)
+..+..|+.|+.+|+.....+..|+.++..+++..+.. +++.++.|+.+|..|..|++.++
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~---------------L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---------------TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998887777666532 23444445555555555555554
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.12 E-value=0.19 Score=51.60 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=13.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
+..|..|+.-+.+.+..|+.+..++-.+++..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.03 E-value=0.014 Score=71.63 Aligned_cols=73 Identities=27% Similarity=0.196 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
...||..|+..+..++++-.+++.++.++ ...+. +.+++.+|.....++..+...+..|+.+...|++++.+.
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM 932 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555555554444 11111 444444554444444445555555555555555555444
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.93 E-value=1.3 Score=42.57 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
..+|+.|...+..|+.+-..|+.++.++
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.36 E-value=0.96 Score=46.35 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-----Hhhhhhhhccc-ccchHhHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER-----KNDNKNAINMG-SSSSQNLEMEVVELRRLN 230 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q-----~ee~~~~~~e~-e~~~~~LE~Ev~ELRr~N 230 (790)
+..|+.++.....+++.+...|..++.+...+++.+..+..-... +-+++..+.+. +..+..||.++.|+-...
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333322111 11122222222 366677777777777777
Q ss_pred HHHHHHHhhhhhhhhhhhhhh
Q 003863 231 KELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 231 keLQ~EkreL~~KLd~ae~~~ 251 (790)
..++.+..++..+++..+..+
T Consensus 121 e~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 121 KRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665544
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.13 E-value=0.04 Score=67.53 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=19.7
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+...+..||..|+..+..++..-..|+.++..+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776666655555555544444
No 8
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=95.00 E-value=0.0041 Score=66.69 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=12.9
Q ss_pred ccccchhHHHHhhc-CCcccc
Q 003863 351 SGGRRLSFIKKFKK-WPIASE 370 (790)
Q Consensus 351 s~sKk~~li~KLKk-W~~~ke 370 (790)
+.+|......++-+ |-.+.+
T Consensus 268 ~~s~~~e~A~~fl~~~l~s~e 288 (449)
T 3iot_A 268 AASPNKELAKEFLENYLLTDE 288 (449)
T ss_dssp TTCSCHHHHHHHHHHTTSSHH
T ss_pred CCCCCHHHHHHHHHHHhcCHH
Confidence 34566677777886 866544
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.99 E-value=0.71 Score=62.17 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=31.0
Q ss_pred cccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh---HHHHHHHHH-------HhhhhHHHHHHHH
Q 003863 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK---VLELERELE-------AKKIENDEIVRRV 178 (790)
Q Consensus 114 ~~~~~~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-----KEQE~---I~ELq~qL~-------~k~~Ei~~L~~kI 178 (790)
|++...+..+-.=|...+.+ |.++...++.+..+| |=.|+ |.+|+.+|. .++.+.+.+-.+|
T Consensus 1888 R~~yvTP~syLeli~~y~~l---l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1888 RQNYVTPRHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444443 344444444444444 32333 555555554 4555555554455
Q ss_pred hhhHHH
Q 003863 179 GMLEDE 184 (790)
Q Consensus 179 ~sLeaE 184 (790)
..=+.+
T Consensus 1965 ~~~~~~ 1970 (3245)
T 3vkg_A 1965 VQDQQA 1970 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.68 E-value=0.24 Score=60.60 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=11.6
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
|...++.+|.+|+.|...|++++...
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 11
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.05 E-value=6.3 Score=38.43 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHHHH
Q 003863 260 SDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301 (790)
Q Consensus 260 s~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv~L 301 (790)
+.||+.++.+...+...|+.|..|+..-+.--...-++|..|
T Consensus 100 N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 100 NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458998888888888888888888875554444444555444
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.02 E-value=1.6 Score=43.03 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh----hhhhcccccchHhHHHHHHHHHHHHHHHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN----KNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~----~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ 234 (790)
||...+...-.-+..|.-++..|+.....|+.+++.+-....|+... ...-.+++.++..|..|+..++-....++
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333555566677777777777777777777666665433 22223456889999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhh
Q 003863 235 MEKRNLACKFSSMENQLT 252 (790)
Q Consensus 235 ~EkreL~~KLd~ae~~~~ 252 (790)
.+++.|..|+..-|...+
T Consensus 118 ~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998887775443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.72 E-value=3.9 Score=41.07 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHH----hhhHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDE----KTSLSEQLAALS 196 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE----~~rLq~qv~e~~ 196 (790)
+.++++.|+.-+.++|+--.-||.+|-.- ...+. +++|+.++..-..|++.++-+......+ ...|+.++..+.
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999988888888887655 55555 8888888888888888888888777777 555565555443
Q ss_pred HHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc---ChhhHH--HHHHHHHH
Q 003863 197 VILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA---SESDII--SKIKAEAL 271 (790)
Q Consensus 197 ~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~---~Es~~v--a~~~eE~~ 271 (790)
... ..|-..+.+|--.|.+|+-..|....-|+..+++++..-.. -|+++- ..+++++.
T Consensus 102 ~~~-----------------~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~Q 164 (189)
T 2v71_A 102 AIK-----------------EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQ 164 (189)
T ss_dssp HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHH-----------------HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23444445555556666666666666666555554332110 112211 13344455
Q ss_pred HHhhhchhHHHHHHHHh
Q 003863 272 VLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 272 ~Lr~~NE~L~~QlE~f~ 288 (790)
.||.+.-+|...+.+.+
T Consensus 165 RLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 165 RLKDEARDLRQELAVRE 181 (189)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666666666665554
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.08 E-value=0.81 Score=50.92 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSE 150 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlE 150 (790)
..||..++..|+.|+++....+..+..
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~ 481 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQG 481 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444433
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.47 E-value=2.5 Score=47.06 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
++..+...|..|+++....+..+....
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~ 483 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLH 483 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666555555544443
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.91 E-value=4.5 Score=37.72 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH----hhhhhhhcccccchHhHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK----NDNKNAINMGSSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~----ee~~~~~~e~e~~~~~LE~Ev~ELRr~Nke 232 (790)
+..|+..|.........|..+...|..+.+.|+.++..-....... ....++..+++..+++|+..+.+....|..
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~ 101 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555666666677777777777777765433222211 111222333344444444444444444444
Q ss_pred HHHHHhh
Q 003863 233 LQMEKRN 239 (790)
Q Consensus 233 LQ~Ekre 239 (790)
|+.+++.
T Consensus 102 L~~~kkk 108 (129)
T 2fxo_A 102 LTAKKRK 108 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.89 E-value=16 Score=49.82 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=33.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..|++||.++.+|+..-.++..|+..|....+.++.++ ..|..-+.+|-.+.++=..+++.|+.....
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl------------~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV------------DRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 45555555555555555554445544444444444333 123344444555555555555555444433
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.45 E-value=14 Score=34.40 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
...|+.+|+.....+....-....|.+....|+.++.+. +.++.+.|....+|-..-+.|+.+
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-----------------~~rleeeee~~~~L~~~kkkle~e 112 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-----------------NKRLEDEEEMNAELTAKKRKLEDE 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554445555555555555555555443 334444555555555555555555
Q ss_pred Hhhhhhhhhhhh
Q 003863 237 KRNLACKFSSME 248 (790)
Q Consensus 237 kreL~~KLd~ae 248 (790)
..+|...|+..+
T Consensus 113 ~~~Lk~~led~e 124 (129)
T 2fxo_A 113 CSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.46 E-value=4.1 Score=44.49 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 221 MEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 221 ~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
.++..|++.|.+|+.+..++..+++.|.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 3444445555555555555555555444
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.12 E-value=20 Score=35.36 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=40.9
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc--ccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA--KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~--~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR 291 (790)
..+..+|..+.||+-.+..|+-++..|-.-+..-++++..-- -.--+++++.+..-+..|..+-+.+...+.....++
T Consensus 41 k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~ 120 (168)
T 3o0z_A 41 KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGER 120 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444444444444444444443333322100 001133444444555555555555555555555555
Q ss_pred hchHHHHHHH
Q 003863 292 LNEVEELAYL 301 (790)
Q Consensus 292 ~~dvEELv~L 301 (790)
....|-|..|
T Consensus 121 r~L~Ekl~~l 130 (168)
T 3o0z_A 121 KEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 21
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.61 E-value=4.5 Score=35.59 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-----HhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILER-----KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q-----~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
||..|..+|..+..++.+|.-++-........ +.|...| ..+|.+++-||+-..++-+-+.+|-.|+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R--------~~~E~d~~~LrkdvD~a~l~r~dLE~kv 72 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR--------EEAENTLQSFRQDVDNASLARLDLERKV 72 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566677777777777776666554433331 2222222 5789999999999999999999998888
Q ss_pred hhhh
Q 003863 245 SSME 248 (790)
Q Consensus 245 d~ae 248 (790)
++-.
T Consensus 73 esL~ 76 (86)
T 3swk_A 73 ESLQ 76 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.23 E-value=12 Score=34.45 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
-|+.+|..||..|..+.....+|+.++..+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777666554
No 23
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.15 E-value=2.8 Score=36.96 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhH--HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH
Q 003863 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDI--ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~--va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv 299 (790)
|+.+||+....+..+|..|...++.++..+.-+-.--|.++ -..+..++..||..=+++.-.--.|+..=++..+||.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887766655444445443 3355666676665444443333344444455566666
Q ss_pred HHH
Q 003863 300 YLR 302 (790)
Q Consensus 300 ~LR 302 (790)
+||
T Consensus 81 fLk 83 (86)
T 3swk_A 81 FLK 83 (86)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 24
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.46 E-value=24 Score=31.53 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHh
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKN 203 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~e 203 (790)
.+++.|..-++.|+..|..|-.+|.+. ++. ..+...|..++++..+|..+-..|-
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~-----------------~~l~~el~~le~E~~~L~~eE~~~w------- 59 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNR-----------------KVVAENLEKVQAEAERLDQEEAQYQ------- 59 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------------HHHHHHHHHHHHHHHHHhhHHHHHH-------
Confidence 356777777777777777777777666 333 2233334444444333333222221
Q ss_pred hhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863 204 DNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (790)
Q Consensus 204 e~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~ 253 (790)
.+-..+++..-++|.+..-|-++|+.|+.++..
T Consensus 60 -----------------~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 60 -----------------REYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345566666677777777777777666543
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.32 E-value=4.4 Score=36.17 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 161 q~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
+.+++...++...|..++..|..+...|+.++.++..+.+.
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~e 45 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDE 45 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777888888888888777777663
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.29 E-value=4 Score=37.25 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHh
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR 238 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~Ekr 238 (790)
|-..|...++-|+.|+++|+.+-... -.++.+|+.||..||+.|..|-.|+.
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~-----------------~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRL-----------------DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888999999998774333 24678999999999999999988764
No 27
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.35 E-value=5.9 Score=34.94 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=33.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRV 178 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI 178 (790)
.++-+||..||..|.+|+....--|-.|.-.| +.|..||.+|..+.+||.-|.-++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK--~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATK--AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 36788999999888887665544433333323 115666666666666655554443
No 28
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=79.74 E-value=47 Score=32.32 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcc-------cccchHhHHHHHHHHHHHHHH
Q 003863 160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINM-------GSSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e-------~e~~~~~LE~Ev~ELRr~Nke 232 (790)
++..|...-..+.....+|..|+.+....-..+..+-.. ++.+..+... +..++++.|..+..--|....
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~s---eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~k 102 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQ---AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK 102 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444455555555555555544433333222111 1122222111 135555556666666666666
Q ss_pred HHHHHhhhhhhhhhhhhhh
Q 003863 233 LQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 233 LQ~EkreL~~KLd~ae~~~ 251 (790)
||.+...|-.+|..+...+
T Consensus 103 LEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 103 LEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666554433
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.39 E-value=12 Score=34.84 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=53.0
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..+..|+.|+..|+..+..|+....++-.+++.+-..+. ..+..+.++...+|..-.....+...|-.-+-.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q--------~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQ--------EMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777665544432 234555666666666655666666666666655
Q ss_pred hHHHHH-HHHHh
Q 003863 294 EVEELA-YLRWV 304 (790)
Q Consensus 294 dvEELv-~LR~~ 304 (790)
.--|+. |++++
T Consensus 117 Ld~EIatYRkLL 128 (131)
T 3tnu_A 117 LEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhH
Confidence 555555 65554
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.87 E-value=11 Score=34.76 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhH--HHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHH
Q 003863 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDI--ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVE 296 (790)
Q Consensus 219 LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~--va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvE 296 (790)
.|.++.+||+....+..+|..|...++.++..+.-+-.--|.++ -..+..++..||..=++..-.--.|+..-....+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 46677788888888877777777777777665544433333332 2233444454443222222211233344444556
Q ss_pred HHHHHHHhh
Q 003863 297 ELAYLRWVN 305 (790)
Q Consensus 297 ELv~LR~~N 305 (790)
||.++|-+-
T Consensus 98 El~FLKk~h 106 (119)
T 3ol1_A 98 EIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665443
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=78.66 E-value=6.9 Score=36.29 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 003863 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (790)
Q Consensus 220 E~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~ 288 (790)
|....+|+..|..|.+|.-++..||..++...++ .+..++.|+..||..|+.|...|-.+.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--------~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK--------QVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999998765433 355788999999999999988776554
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.43 E-value=12 Score=34.75 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=45.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhc
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~ 293 (790)
..+..|+.|+..|+..+..|+....+.-.+++.+-..+ ...+..+.++...+|..-.....+...|-.-+-.
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~--------q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA--------RNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666555443333 1234455555555555555555555555555544
Q ss_pred hHHHHH-HHHHh
Q 003863 294 EVEELA-YLRWV 304 (790)
Q Consensus 294 dvEELv-~LR~~ 304 (790)
.--|+. |++++
T Consensus 115 Ld~EIatYRkLL 126 (129)
T 3tnu_B 115 LDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhH
Confidence 444554 54443
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.83 E-value=13 Score=35.41 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=11.9
Q ss_pred HHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 163 ELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 163 qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
++.....++..|+.++..|+.+..+|+.
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443
No 34
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.21 E-value=2.6 Score=38.49 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
.++..|..+|.+|+.|+.+|..++..+-.-.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999988776665
No 35
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.90 E-value=16 Score=32.90 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
.+.++.++..|+.+.....+.+.++-.-.++ .++....+|.||..|.+.+..|+.+...+..+|..|..+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~----------~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKA----------AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888877777766655433332 134445678888888888888888888777777777655
Q ss_pred h
Q 003863 251 L 251 (790)
Q Consensus 251 ~ 251 (790)
+
T Consensus 74 L 74 (101)
T 3u1c_A 74 L 74 (101)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.72 E-value=17 Score=32.29 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHh-HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQN-LEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 168 ~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~-LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
+...--+=-+|-.||.+|..|+.++..+.. + .. ..+.. -|.++.+||+....+..++..|...++.
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l~~---~--~~--------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAELEQLKG---Q--GK--------SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---c--cC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556788888888888887754431 1 11 12333 4888999999999999998888777775
Q ss_pred hh
Q 003863 247 ME 248 (790)
Q Consensus 247 ae 248 (790)
.+
T Consensus 82 l~ 83 (93)
T 3s4r_A 82 LA 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.32 E-value=17 Score=32.53 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
.+..+.++..|+.+.....+.+.++-.-.++. +.....+|.||..|.+.+..|+.+......+|..+...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~----------e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQA----------EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888777777666554333321 23445577778888888888888877777777766655
Q ss_pred h
Q 003863 251 L 251 (790)
Q Consensus 251 ~ 251 (790)
+
T Consensus 74 L 74 (101)
T 3u59_A 74 L 74 (101)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=75.65 E-value=24 Score=32.23 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW--------KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy--------KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
.-.+..-+..-.++......|+.++.+. ++|-. |..|+++|..+..|+..|+..+..++.++..+...+.+
T Consensus 14 ~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~ 93 (107)
T 2no2_A 14 TKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAE 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666666664 44444 89999999999999999999999999998888887755
Q ss_pred HH
Q 003863 195 LS 196 (790)
Q Consensus 195 ~~ 196 (790)
..
T Consensus 94 l~ 95 (107)
T 2no2_A 94 LE 95 (107)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.12 E-value=12 Score=34.88 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHH-------HHHHHHHHhhh
Q 003863 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRL-------NKELQMEKRNL 240 (790)
Q Consensus 168 ~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~-------NkeLQ~EkreL 240 (790)
...|+.|++.|..|..+.+++..+...+ +. .+...|..||.|..+=|.. |..|.+++.+|
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~---v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRV---VL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888877777764332222 11 1335667777777776665 44455555544
No 40
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.74 E-value=2.6 Score=38.44 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=41.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh---------hhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSS---------MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~---------ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
+..|--+|.+|++.|.+|..++..|-.+|.. +-.++--+.+.+-+......++++..|+.+++.|...|..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444444443 2222222333344444446788999999999999888776
Q ss_pred Hhh
Q 003863 287 LQM 289 (790)
Q Consensus 287 f~~ 289 (790)
++.
T Consensus 94 lEe 96 (100)
T 1go4_E 94 MER 96 (100)
T ss_dssp CC-
T ss_pred Hhc
Confidence 543
No 41
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.43 E-value=4.4 Score=38.77 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
+++.+|..+|..+...+.+...|+.. ..+.+.|...++....+..+|++.+.+-...+.
T Consensus 5 ~LEd~L~~~r~~l~~~~~~~~~le~l--------------------~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~- 63 (135)
T 2e7s_A 5 SLEEQLNKSLKTIASQKAAIENYNQL--------------------KEDYNTLKRELSDRDDEVKRLREDIAKENELRT- 63 (135)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-
Confidence 44555666666666665555554431 223334444445556666666555543222221
Q ss_pred HhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHH
Q 003863 202 KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLS 281 (790)
Q Consensus 202 ~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~ 281 (790)
+.+.....++.|+.+|-.+.= +. -+.||+.++.+...+...|+.|.
T Consensus 64 ---------~aE~~~~~ie~ElE~LTasLF-------------eE------------AN~MVa~ar~~~~~~e~r~~~L~ 109 (135)
T 2e7s_A 64 ---------KAEEEADKLNKEVEDLTASLF-------------DE------------ANNLVADARMEKYAIEILNKRLT 109 (135)
T ss_dssp ---------HHHHTTHHHHHHHHHHHHHHH-------------HH------------HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHH-------------HH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555666666666644321 10 13477777777777777777776
Q ss_pred HHHHHH
Q 003863 282 KQVEGL 287 (790)
Q Consensus 282 ~QlE~f 287 (790)
.|+..-
T Consensus 110 ~ql~e~ 115 (135)
T 2e7s_A 110 EQLREK 115 (135)
T ss_dssp HTTTHH
T ss_pred HHHHHH
Confidence 666543
No 42
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.33 E-value=35 Score=30.64 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ 234 (790)
+++++......-.+|.-|..+|..|+.+-.++++++.+.....+ +.++...+-|.+|.-|-|.+--|+
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe----------e~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL----------FAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555566668888888888888888888887776543322 123455667778877777666554
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.04 E-value=12 Score=35.54 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
..++.|+.+|++.+.+||.++..|-..|
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666654433
No 44
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.68 E-value=14 Score=32.47 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 165 EAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 165 ~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
+...++.-.|..++..+..+...++.++.++..+..
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666777777777666665
No 45
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.26 E-value=13 Score=34.82 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=37.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 120 ~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
+++-+..|++|+.-|..|+..=.++-.|=..| |..|+.++..-.+|++.-...+--...|++.|..++..
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~-----v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRV-----VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557789999999988877665554433333 33444443333333333333333344445555554443
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.05 E-value=35 Score=33.27 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=36.7
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 173 ~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
++...|..|+.+...|+..+.++....+.+.... ..+...+-.|-.++..|...+..||.||.+|..|+=
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~---e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNT---ERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444332222111000 012244555666667777777778888877777764
No 47
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.98 E-value=6.3 Score=37.73 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEy----KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
..+|...+..+..|..-.. ++.++ ..-+. +..|+..|..+...=.........++.|-+.|-+.+
T Consensus 14 r~~l~~~~~~~~~le~l~~----~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 14 LKTIASQKAAIENYNQLKE----DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888877765333 34443 22222 556666666655544444445555555655555444
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.92 E-value=23 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 260 SDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 260 s~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
+.||+.++-+...+...|+.|..||..
T Consensus 68 N~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 68 NNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 459999999988888899999888864
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.48 E-value=18 Score=31.06 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=51.6
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 172 DEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 172 ~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
+.++.++..|+.+.....+.+.++..-.++ .++....+|.||..|.+.+..|+.+......+|..|+.++
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~----------~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKA----------AEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888877777766655433332 1345577888999999999999999888888888887665
Q ss_pred h
Q 003863 252 T 252 (790)
Q Consensus 252 ~ 252 (790)
.
T Consensus 72 e 72 (81)
T 1ic2_A 72 E 72 (81)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}
Probab=69.28 E-value=1.1 Score=48.20 Aligned_cols=9 Identities=0% Similarity=0.036 Sum_probs=4.2
Q ss_pred cccccCCCC
Q 003863 435 LSSQKYDFD 443 (790)
Q Consensus 435 ~~~~KY~~~ 443 (790)
+..++....
T Consensus 287 lR~qR~~mV 295 (354)
T 4i8n_A 287 MRKFRMGLI 295 (354)
T ss_dssp HHTTSTTCS
T ss_pred HHHhCcccc
Confidence 344444444
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.25 E-value=16 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 003863 131 RSLLQESKEREFKLQAELSEWKRN 154 (790)
Q Consensus 131 R~~V~eLqeRE~kLE~eLlEyKEQ 154 (790)
=..|+.|++.-..|+.++..++.+
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345788888888888888777443
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.62 E-value=83 Score=36.10 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=17.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKEREFKLQ 145 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqeRE~kLE 145 (790)
.|+..-|+.||+.+.+++.-...-+
T Consensus 60 rDltkrINELKnqLEdlsKnsKdse 84 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHH
Confidence 3467778888888888865555444
No 53
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=64.68 E-value=1e+02 Score=29.60 Aligned_cols=72 Identities=18% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW-----KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy-----KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
..|..|..-+.+|+..--.-+.+|.=. .||+.|-.||++-.+-..||-.|....+++|-.-++-+.+++...
T Consensus 11 ~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~ 87 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNS 87 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 345556666655554333333333222 667678888888777777777777777777666555555554443
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.22 E-value=25 Score=34.22 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~kLE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
..+|..|+..+..|+.+=..|+.+|. +... +..|+- |+..|+.+.+.++.+..+|+++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~---eK~K~~e~l~D-------El~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIA---LKNKNTERLNA-------ALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443332 2222 333444 4444444555555554444443
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.22 E-value=55 Score=28.89 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHH
Q 003863 160 LERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 160 Lq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
|+..++..-..|..|..+|.-|..+|..|..++
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333345555555555555555444443
No 56
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.20 E-value=1.1e+02 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 003863 122 DLFLELDSLRSLLQESKEREFKLQ 145 (790)
Q Consensus 122 ~~~~EI~~LR~~V~eLqeRE~kLE 145 (790)
+++.++..+|..+..++.|-..|+
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE 40 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYN 40 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.52 E-value=36 Score=31.61 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 003863 125 LELDSLRSLLQESKE 139 (790)
Q Consensus 125 ~EI~~LR~~V~eLqe 139 (790)
.||+.|+..+...++
T Consensus 24 ~ei~~L~~~L~~AEe 38 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEE 38 (110)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 377777766555443
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.11 E-value=67 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
|.+.+.++..-..++..|..++..|+.+...|+.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677776677777777777777777777777665
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.05 E-value=38 Score=31.31 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhh-hhhhhcccccchHhHHHHHHHHHHHHHH
Q 003863 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKND-NKNAINMGSSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 168 ~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee-~~~~~~e~e~~~~~LE~Ev~ELRr~Nke 232 (790)
..||..|+..|.+|+.|...++.+.+.+-.....-+. ....-......+..||.++..+|.....
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4466667777777777766666655544333321111 0000011245667777777666654433
No 60
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=57.82 E-value=20 Score=32.96 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=36.2
Q ss_pred hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 152 KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
.|+|. +.++++++..+..++..++..+..|+.+...|++++.+
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445 78889999999999999999999999998888888764
No 61
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=57.29 E-value=53 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHh
Q 003863 158 LELERELEAKKIENDEIVRRVGMLEDEK 185 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLeaE~ 185 (790)
+||..+|..+..||+.|+.-|++|.+.-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998873
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.23 E-value=13 Score=31.72 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=28.3
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
++.+++||.+|.+|+..+..|+.|+..|...+...+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999998888877777766665443
No 63
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.85 E-value=72 Score=27.60 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH-H
Q 003863 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-Y 300 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv-~ 300 (790)
|+..|+..|..|+-...++-.+++..-..+. ..+..+.++...+|..-+....+...|-.-+-..--|.. |
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q--------~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQ--------DTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5667788888888888888777766554442 244555666666666555666666666555555455555 6
Q ss_pred HHHhh
Q 003863 301 LRWVN 305 (790)
Q Consensus 301 LR~~N 305 (790)
+|++.
T Consensus 74 RkLLE 78 (84)
T 1gk4_A 74 RKLLE 78 (84)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66654
No 64
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=56.13 E-value=35 Score=29.55 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
|..|+..+.++..-.+.|+-.|-||.-|++-|++.+..
T Consensus 34 I~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 34 IRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999987754
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.00 E-value=12 Score=30.30 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=25.0
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
..+..|-.|..+||..+.+|+.+..+|..||..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667778888888888888888888887764
No 66
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=55.65 E-value=2.4 Score=46.95 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=7.8
Q ss_pred ccchHHHHHHHH
Q 003863 598 YQNIEDVVAFVK 609 (790)
Q Consensus 598 ~~dm~dlv~Fv~ 609 (790)
|..+.+|+.++.
T Consensus 222 F~SL~eLv~~y~ 233 (535)
T 2h8h_A 222 FNSLQQLVAYYS 233 (535)
T ss_dssp ESSHHHHHHHHH
T ss_pred ccChHHhheeec
Confidence 566677776664
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.58 E-value=38 Score=37.32 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=50.6
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHh-hhchhHHHHHHHHhh
Q 003863 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR-HTNEDLSKQVEGLQM 289 (790)
Q Consensus 211 e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr-~~NE~L~~QlE~f~~ 289 (790)
++..+|.+|-.++.+|.+.++....-.+++...|...+.++.-..+.. +++-..++.-+..|+ .++..|. +|.+|+.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~-~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~ 141 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTF-KQINEDLRSRIEILRRKVIEQVQ-RINLLQK 141 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Confidence 345778888888888888888888888888888877777765443322 222234444455554 2333333 5555555
Q ss_pred hhhchHHHH
Q 003863 290 SRLNEVEEL 298 (790)
Q Consensus 290 dR~~dvEEL 298 (790)
+-++-+.+.
T Consensus 142 ~l~~q~~ki 150 (390)
T 1deq_A 142 NVRDQLVDM 150 (390)
T ss_pred HHHHHHHHH
Confidence 444333333
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=55.53 E-value=1.1e+02 Score=27.12 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeL 233 (790)
+++++......-.+|..|+.+|..|+.+-...++++.....-.+. .++...+-|.+|.-|-|.+--|
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~----------~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ----------AEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455577778888888888777777776655432221 1244455677777776665444
No 69
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.41 E-value=44 Score=38.47 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=8.1
Q ss_pred cchHhHHHHHHHHHHH
Q 003863 214 SSSQNLEMEVVELRRL 229 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~ 229 (790)
...+.|..|+.+|++.
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445555555555544
No 70
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.50 E-value=78 Score=27.95 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=36.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-----------Ch---hhHHHHHHHHHHHHhhhchhHH
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA-----------SE---SDIISKIKAEALVLRHTNEDLS 281 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~-----------~E---s~~va~~~eE~~~Lr~~NE~L~ 281 (790)
+.+++.+..+++.....|+.+..++..++...+..+..+... ++ .+++..+..++..|+..=..|.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444443321 21 2356666677775554444555
Q ss_pred HHHHHH
Q 003863 282 KQVEGL 287 (790)
Q Consensus 282 ~QlE~f 287 (790)
.+++.+
T Consensus 85 ~~i~~l 90 (112)
T 1l8d_A 85 DRKSEL 90 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 71
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.30 E-value=38 Score=31.47 Aligned_cols=65 Identities=23% Similarity=0.126 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhh-hhhhhcccccchHhHHHHHHHHHHHHHH
Q 003863 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKND-NKNAINMGSSSSQNLEMEVVELRRLNKE 232 (790)
Q Consensus 168 ~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee-~~~~~~e~e~~~~~LE~Ev~ELRr~Nke 232 (790)
..||..|+..|.+|+.|...+..+.+.+-.....-+. ....-......+..||.++..+|.....
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666655554433322221110 0000011245667777777666654433
No 72
>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}
Probab=54.12 E-value=2.7 Score=45.08 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 003863 266 IKAEALVL 273 (790)
Q Consensus 266 ~~eE~~~L 273 (790)
+++|...|
T Consensus 37 ~e~ef~~l 44 (354)
T 4i8n_A 37 MEKEFEQI 44 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 73
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=53.83 E-value=1.4e+02 Score=27.67 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=13.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003863 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (790)
Q Consensus 217 ~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae 248 (790)
..|+.|+..||..+..|+...|+|-.+-|.-|
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 33444444444444444444444444444333
No 74
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.63 E-value=21 Score=30.91 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHHhhhhchh-HHHHHHHHHHhhhhHHHHHHHHhhh
Q 003863 144 LQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGML 181 (790)
Q Consensus 144 LE~eLlEyKEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sL 181 (790)
|+....|.+.++. |.+|+.+|..+..+|..|..++-.+
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444555 7777777777777777666555433
No 75
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=53.62 E-value=1.6e+02 Score=28.30 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhH
Q 003863 158 LELERELEAKKIENDEIVRRVGMLE 182 (790)
Q Consensus 158 ~ELq~qL~~k~~Ei~~L~~kI~sLe 182 (790)
+||+..|+.+..=++-|..+|..|.
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~Lr 125 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILR 125 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 76
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=53.27 E-value=1.7e+02 Score=28.47 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
|..|+.||+..+.+.+.--..|.-++.+..+-++.+.....-..+-++.++. +...++.||+-...---.-..++.+
T Consensus 2 ~~~lE~qlkeaae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~---v~~nlKsLE~seekasqrEd~yEeq 78 (155)
T 2efr_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKT---VTNNLKSLEAQAEKYSQKEDKYEEE 78 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccchhhhhHHHHHHHHHHHH
Confidence 3467777776644444444444444444444333332221111111111110 1244555555444444445556666
Q ss_pred Hhhhhhhhhhhhhhh
Q 003863 237 KRNLACKFSSMENQL 251 (790)
Q Consensus 237 kreL~~KLd~ae~~~ 251 (790)
.+.|..+|..|+.++
T Consensus 79 Ik~L~~kLKEAE~RA 93 (155)
T 2efr_A 79 IKVLSDKLKEAETRA 93 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777766655
No 77
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.79 E-value=34 Score=30.04 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
+..|+..|.........|..+...|..+.+.|+.|
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555666666666666666
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.79 E-value=1e+02 Score=33.40 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=14.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRN 239 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~Ekre 239 (790)
+++++||.||.+|-...+++..|..+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777666665555544444433
No 79
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=52.26 E-value=4.4 Score=36.02 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=7.0
Q ss_pred ccchhHHHHHHh
Q 003863 522 QRAPQVVEFYHS 533 (790)
Q Consensus 522 ~RsPevvelYrs 533 (790)
.-.+.+.++|..
T Consensus 30 ~D~~~~~~l~~~ 41 (166)
T 4evy_A 30 ASLKDWLELRNK 41 (166)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 335666676644
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.24 E-value=1.1e+02 Score=26.90 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
+..|+.+++.-..+|..|..++..++.+-..|+..+.+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666666666655544
No 81
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=52.23 E-value=1.1e+02 Score=26.17 Aligned_cols=45 Identities=22% Similarity=0.102 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
+.+.+.+....-.+|..|+.+|..|+.+-.+.++.+.....-.+.
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566789999999999999999999888876654443
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.02 E-value=1.6e+02 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=13.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
+.+.++...+.+.+.+.+++-.++..|+.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 456 KLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 83
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=51.68 E-value=3.4 Score=45.93 Aligned_cols=15 Identities=0% Similarity=0.003 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003863 125 LELDSLRSLLQESKE 139 (790)
Q Consensus 125 ~EI~~LR~~V~eLqe 139 (790)
.-++.|...|..+.+
T Consensus 83 ~~l~~~d~vv~~a~~ 97 (515)
T 3icg_A 83 TWMKRVEEIANYAFD 97 (515)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666655544
No 84
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=49.00 E-value=53 Score=29.61 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
.++.....+|..|+++..+++..+++..
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788889999999999999999988764
No 85
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.80 E-value=58 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=10.8
Q ss_pred cChHHHHHHHHHHHHHHHH
Q 003863 121 RDLFLELDSLRSLLQESKE 139 (790)
Q Consensus 121 ~~~~~EI~~LR~~V~eLqe 139 (790)
.++..-|+.|++.|..++.
T Consensus 63 r~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455566666666655543
No 86
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=48.46 E-value=16 Score=39.52 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=34.6
Q ss_pred HHHHHh-hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 269 EALVLR-HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 269 E~~~Lr-~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
=+..|| ..+++|.+|++.|++++++|.+||.. |+.+ ++-++.+.
T Consensus 269 il~~lr~~~~~~L~~Qi~~fe~~~~eD~~el~~-r~~~--~~~d~~d~ 313 (383)
T 3eg5_B 269 VLQELREIENEDMKVQLCVFDEQGDEDFFDLKG-RLDD--IRMEMDDF 313 (383)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHCCSH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhHHHHHh-hccc--cCcCcCCH
Confidence 344567 46999999999999999999999998 7876 34455443
No 87
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.93 E-value=22 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=25.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
++++.||.+|.||-..|.+|+.|-.-|..-|-.
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 356789999999999999998887766555443
No 88
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=47.70 E-value=42 Score=26.32 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
+.+|+.+.+........|..+|+.||.||.-|..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555555555566778888888888877754
No 89
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.50 E-value=1.8e+02 Score=27.26 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.1
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHH
Q 003863 213 SSSSQNLEMEVVELRRLNKELQME 236 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~E 236 (790)
.+.|++.+.||++||+.|..|+-.
T Consensus 84 nq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 84 NHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhhhhH
Confidence 478899999999999998877643
No 90
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=46.86 E-value=18 Score=39.26 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHh-hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 269 EALVLR-HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 269 E~~~Lr-~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
=+..|| ..+++|..|++.|.+.+.+|.+||.+ |+.+ ++.++.+.
T Consensus 207 il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~-r~~~--i~~d~~d~ 251 (386)
T 2bnx_A 207 VLQELREIENEDMKVQLCVFDEQGDEDFFDLKG-RLDD--IRMEMDDF 251 (386)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHCCCH
T ss_pred HHHHHhccCChhHHHHHHHHHHHHHHHHHHHHh-hhhc--CCCCCCCH
Confidence 345667 58999999999999999999999998 7777 44555443
No 91
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=46.01 E-value=7.8 Score=30.53 Aligned_cols=8 Identities=0% Similarity=0.285 Sum_probs=3.5
Q ss_pred cccccchh
Q 003863 519 GVVQRAPQ 526 (790)
Q Consensus 519 ~kv~RsPe 526 (790)
++++|++.
T Consensus 31 AKLRkV~r 38 (43)
T 2pbd_V 31 AKLRKVSK 38 (43)
T ss_dssp CCCBCCC-
T ss_pred hhhccccC
Confidence 44555443
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.26 E-value=14 Score=31.56 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=21.7
Q ss_pred hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhH
Q 003863 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSL 188 (790)
Q Consensus 152 KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rL 188 (790)
+++|. |.+|+.....-.+|...|...|..|+.|++.|
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455 55555555544566666666666666665543
No 93
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.03 E-value=52 Score=28.71 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH-H
Q 003863 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-Y 300 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv-~ 300 (790)
|+..|+..+..|+....++-.++...-.++ ...+..+.++...+|..-+....+...|-.-+-..--|.. |
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~--------q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTS--------RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444444443332222 1133344455555555444555555555555544445555 6
Q ss_pred HHHhh
Q 003863 301 LRWVN 305 (790)
Q Consensus 301 LR~~N 305 (790)
+|++.
T Consensus 76 RkLLE 80 (86)
T 1x8y_A 76 RKLLE 80 (86)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 94
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.86 E-value=44 Score=27.64 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
+.+|+.+++.-..+...|..+|+.|+.|..-|...+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555556666666666666666666655554
No 95
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.80 E-value=1e+02 Score=28.93 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 003863 229 LNKELQMEKRNLACKFSSM 247 (790)
Q Consensus 229 ~NkeLQ~EkreL~~KLd~a 247 (790)
..++||.|...|..+|..+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555566666544
No 96
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=44.68 E-value=34 Score=30.61 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHHHH-H
Q 003863 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-Y 300 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEELv-~ 300 (790)
.+..|+..|..|+-..+++-.+++..-..+. .+++.+.++...+|..-+....+...+-.-+-..--|+. |
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q--------~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSR--------RMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444444333321 133344455554444444444444444444444444444 6
Q ss_pred HHHh
Q 003863 301 LRWV 304 (790)
Q Consensus 301 LR~~ 304 (790)
++++
T Consensus 85 rkLL 88 (95)
T 3mov_A 85 RKLL 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.84 E-value=56 Score=37.38 Aligned_cols=84 Identities=11% Similarity=0.169 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-Hhhhhhhh---cccccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER-KNDNKNAI---NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q-~ee~~~~~---~e~e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
-..|..++..+|++..+.++.+.+....... ++++...+ ..+++.-.++|.+...|+.....-..++..|..++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455566666777766666666544322221 11111111 2235667777777888888777778888888888888
Q ss_pred hhhhhhhh
Q 003863 247 MENQLTSL 254 (790)
Q Consensus 247 ae~~~~~~ 254 (790)
++..+..+
T Consensus 417 ~~~~~~~~ 424 (575)
T 2i1j_A 417 KQEEVSRI 424 (575)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 87666544
No 98
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=43.71 E-value=14 Score=36.94 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHHHHHh-hhchhHHHHHHHHhhhhhchHHHH
Q 003863 268 AEALVLR-HTNEDLSKQVEGLQMSRLNEVEEL 298 (790)
Q Consensus 268 eE~~~Lr-~~NE~L~~QlE~f~~dR~~dvEEL 298 (790)
.=+..|| ..+++|.+|++.|++.+++|.+||
T Consensus 202 ~il~~l~~~~~~~L~~Qi~~fe~~~~eD~~el 233 (233)
T 2f31_A 202 QVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233 (233)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCHhhC
Confidence 3345566 489999999999999999999986
No 99
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.68 E-value=1.2e+02 Score=28.13 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhh
Q 003863 231 KELQMEKRNLACKF 244 (790)
Q Consensus 231 keLQ~EkreL~~KL 244 (790)
.+||.+|..|.-|+
T Consensus 94 ~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 94 VRLQKDNDSLQGKH 107 (112)
T ss_dssp --------------
T ss_pred HHHHhhccchhhhh
Confidence 34444444444443
No 100
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.35 E-value=2.5e+02 Score=30.32 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=7.7
Q ss_pred cchHhHHHHHHHHH
Q 003863 214 SSSQNLEMEVVELR 227 (790)
Q Consensus 214 ~~~~~LE~Ev~ELR 227 (790)
..|++++.||.+||
T Consensus 457 ~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 457 HKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 44555555555555
No 101
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.22 E-value=30 Score=39.53 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003863 124 FLELDSLRSLLQESKEREF 142 (790)
Q Consensus 124 ~~EI~~LR~~V~eLqeRE~ 142 (790)
..||.+++..-++-+.|.+
T Consensus 299 ~~e~qqm~~~a~e~~~~~~ 317 (575)
T 2i1j_A 299 TIDVQQMKAQAREEKLAKQ 317 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 7889999887766555443
No 102
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.77 E-value=34 Score=26.01 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=26.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
++++.||..|+||-..|.+|+.|-.-|...|-
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 46788999999999999999988877766554
No 103
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.70 E-value=1.5e+02 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
+..|+.+++.-..+|..|..++..++.+-..|+..+.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666666666665543
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.21 E-value=57 Score=37.37 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=49.2
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
.++|++|-.++.+|.+.+++...--+.+...|...+.+..-+.|. =.++-..++.-+..|+++=.....+|..|+..-+
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNt-ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNT-YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777766666666555555555444444322221 1222224455555565322222366666666655
Q ss_pred chHHHHHHHHH-hhHHH
Q 003863 293 NEVEELAYLRW-VNSCL 308 (790)
Q Consensus 293 ~dvEELv~LR~-~NacL 308 (790)
+-+.++..|.- |.+++
T Consensus 142 dq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 142 AQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555422 44443
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.04 E-value=20 Score=29.34 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
+.+|+.....-..+...|..+|..|+.|...|..+|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554443
No 106
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=41.68 E-value=26 Score=28.43 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=24.0
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
.-+.+||.+|..|...|..|..+...|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477888888888888888888877776554
No 107
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.52 E-value=53 Score=28.40 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE 184 (790)
|.+||..|+.+..||......|..|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~ 48 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELE 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655555544444444444333
No 108
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.05 E-value=2.2e+02 Score=32.03 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=14.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNL 240 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL 240 (790)
..++.|+..+.+|+.....|+.....+
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555665555555544433
No 109
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.85 E-value=47 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
+.+|+.+...-..+-..|..+|..|+.|...|...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 110
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.72 E-value=51 Score=31.04 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=34.4
Q ss_pred HHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhh
Q 003863 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (790)
Q Consensus 236 EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~ 292 (790)
|...|.-|||....+.++....-+.+++++...|.. .|.++|+.+..-+.
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~-------~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKA-------TLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344455556666656666556677889999988888 77777777665554
No 111
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.32 E-value=72 Score=35.33 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=13.7
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
++..|...|..-+++.+.|+.++..
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4555555555555555566655543
No 112
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.64 E-value=1.6e+02 Score=27.35 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=17.5
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ 246 (790)
..+.+=|....+||.+-..++..-.+--.+|..
T Consensus 52 ~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 52 LRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666655555554444444443
No 113
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.17 E-value=57 Score=26.49 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~q 191 (790)
+.+|+.+...-..+...|..+|..|+.|...|..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444445555555555555555555443
No 114
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=36.80 E-value=36 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.3
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHH
Q 003863 172 DEIVRRVGMLEDEKTSLSEQLAALSV 197 (790)
Q Consensus 172 ~~L~~kI~sLeaE~~rLq~qv~e~~~ 197 (790)
|.|+.-+.||++||+.|.+.|.++..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777889999999999999888764
No 115
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.36 E-value=2.4e+02 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAEL 148 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eL 148 (790)
.+|.+|...+......-.+|..+|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444433333333333333
No 116
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.82 E-value=85 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 220 E~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
|....+|++.+..|...|..|+.=|..|..+|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999998887665
No 117
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.29 E-value=1.5e+02 Score=26.35 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 136 ESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 136 eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
.+..||...|.+...-++.|.+..|...| ..||+.-..+|.-||.+.++++..+.++
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566776666544445555577776666 3456666666666666666666555443
No 118
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.14 E-value=47 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAE 147 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~e 147 (790)
++.|+..|...|++||+|--+||.-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999888864
No 119
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=34.14 E-value=8.8 Score=35.35 Aligned_cols=8 Identities=13% Similarity=0.143 Sum_probs=3.7
Q ss_pred HHHhhccc
Q 003863 530 FYHSLMKR 537 (790)
Q Consensus 530 lYrsL~~r 537 (790)
|.+.|.+.
T Consensus 37 li~~l~~~ 44 (190)
T 2h57_A 37 IINKLKPS 44 (190)
T ss_dssp HHHHTSCG
T ss_pred HHHHHhcC
Confidence 44455443
No 120
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.12 E-value=1.7e+02 Score=25.50 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=12.9
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
++..+...|..|+++...++.++
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666655555444
No 121
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.35 E-value=1.1e+02 Score=30.73 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
|..|+.++...+.+++....+|+.|+.+...|++++..+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~ 60 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKEL 60 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 777777555555555555555555555555555555443
No 122
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.11 E-value=42 Score=27.87 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=24.5
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KL 244 (790)
..+.+||.+|.+|...|..|..+...|...|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998888777766544
No 123
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.96 E-value=50 Score=24.73 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=21.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
...||..|.||...|.+|+.|-.-|..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457999999999999999988765543
No 124
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.92 E-value=2.1e+02 Score=23.39 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhcccccchHhHHHHHHHHHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q~ee~~~~~~e~e~~~~~LE~Ev~ELRr~NkeLQ 234 (790)
.-|-|.++|+.|..||.-|..++...+ .-+.+||.|.-.|+...+.||
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS-----------------~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNS-----------------NHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhH-----------------HHHHHHHhhhhhHHHHHHHHc
Confidence 346788888888888888877765544 335678888888887777776
No 125
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.86 E-value=71 Score=24.03 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=24.1
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003863 215 SSQNLEMEVVELRRLNKELQMEKRNLACK 243 (790)
Q Consensus 215 ~~~~LE~Ev~ELRr~NkeLQ~EkreL~~K 243 (790)
+...||..|.||=..|.+|+.|..-|.--
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56789999999999999999987766543
No 126
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.79 E-value=2.8e+02 Score=24.49 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 003863 222 EVVELRRLNKELQMEKRNLACKFS 245 (790)
Q Consensus 222 Ev~ELRr~NkeLQ~EkreL~~KLd 245 (790)
++.|-...|.+|++|...|..++.
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455544444444443
No 127
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.97 E-value=60 Score=34.89 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHh
Q 003863 157 VLELERELEAKKIENDEIVRRVG 179 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~ 179 (790)
|..|+.+|......|..|+.+|.
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444334444433333
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.78 E-value=71 Score=33.36 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=22.3
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHH
Q 003863 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (790)
Q Consensus 119 ~~~~~~~EI~~LR~~V~eLqeRE~kLE~eLlEy-------KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~ 190 (790)
.+.+...||..|+..+.. |..+|.+. +. +. +++|+.++.....+...|...+..++.|..+|++
T Consensus 18 ~~~~~~~~~~~~~~e~~~-------l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 18 LSSGDAAELEQLRREAAV-------LREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp -----------------------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHH-------HHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778777654432 22233111 22 33 6666666666666555555555555555555555
Q ss_pred HHH
Q 003863 191 QLA 193 (790)
Q Consensus 191 qv~ 193 (790)
++.
T Consensus 90 Ele 92 (251)
T 3m9b_A 90 EVD 92 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 129
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.31 E-value=2.4e+02 Score=24.36 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-hhchhHHHHHHHHHHhhhhHHHHHHHHhhhH
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSE---W-KRNPKVLELERELEAKKIENDEIVRRVGMLE 182 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlE---y-KEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLe 182 (790)
...|++.|-..|..|+.+-..|+.+|.. | ...+.+.+|..+|.....+++.+-.+=.-|+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999976 3 3333477777777766666665555544443
No 130
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.26 E-value=67 Score=25.96 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=21.5
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAALS 196 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~~ 196 (790)
..++.|..+|..|+.||..|..++..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888888888888876653
No 131
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.22 E-value=69 Score=24.10 Aligned_cols=29 Identities=28% Similarity=0.155 Sum_probs=22.5
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
++++.||..|+||=..|.+|+.|-.-|..
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35688999999999999999988665543
No 132
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.48 E-value=3.8e+02 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHH
Q 003863 159 ELERELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 159 ELq~qL~~k~~Ei~~L~~kI~sLea 183 (790)
..+..|..+..+++.|+.+|..+++
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555444
No 133
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.29 E-value=61 Score=26.45 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=12.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhh
Q 003863 216 SQNLEMEVVELRRLNKELQMEKRNL 240 (790)
Q Consensus 216 ~~~LE~Ev~ELRr~NkeLQ~EkreL 240 (790)
+.+||.+|.+|...|.+|..+...|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444433
No 134
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.12 E-value=70 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 003863 221 MEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (790)
Q Consensus 221 ~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~ 251 (790)
.+|..||+.|.+|+....+|..+++...+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777666554
No 135
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.66 E-value=1e+02 Score=27.39 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHH---HHHHHHHHHhhhchhHHHHHHHHhhh
Q 003863 224 VELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIIS---KIKAEALVLRHTNEDLSKQVEGLQMS 290 (790)
Q Consensus 224 ~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va---~~~eE~~~Lr~~NE~L~~QlE~f~~d 290 (790)
..|+...+.|+.+...|-..+..++++++. ..-..+|. +.--+||.+|...-.|.-.|.....-
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~---~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv 70 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN---RDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKC 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 445555666666666666666666555432 11122333 23456777776666666555544433
No 136
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=25.61 E-value=15 Score=31.20 Aligned_cols=9 Identities=22% Similarity=0.659 Sum_probs=5.1
Q ss_pred hhHHHHHHh
Q 003863 525 PQVVEFYHS 533 (790)
Q Consensus 525 PevvelYrs 533 (790)
-++.++|..
T Consensus 34 ~~l~~~F~~ 42 (100)
T 2j76_E 34 ESIKEFFRG 42 (100)
T ss_dssp SHHHHHSCS
T ss_pred HHHHHHHHh
Confidence 456666654
No 137
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.55 E-value=1.4e+02 Score=26.17 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhchHHH
Q 003863 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297 (790)
Q Consensus 218 ~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR~~dvEE 297 (790)
+|+.+..++-....+++..|.+|-.++..+|.++ +..+.+-+ .+..++..|...-..-+.|
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~L------------e~s~~~q~-------~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSL------------EEARAERE-------RARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HHHHHHHH-------HHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHH
Q 003863 298 LAYLR 302 (790)
Q Consensus 298 Lv~LR 302 (790)
|..+|
T Consensus 64 L~elR 68 (79)
T 3cvf_A 64 LSELR 68 (79)
T ss_dssp HHHHH
T ss_pred HHHHH
No 138
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.47 E-value=16 Score=30.39 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=6.5
Q ss_pred hhHHHHHHhhc
Q 003863 525 PQVVEFYHSLM 535 (790)
Q Consensus 525 PevvelYrsL~ 535 (790)
-.+..+|+.+-
T Consensus 27 ~~l~~~F~~~D 37 (91)
T 2pmy_A 27 ARLRSVFAACD 37 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 44566666664
No 139
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.41 E-value=1.5e+02 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 157 I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
|.+||.+|.-...-|+.|+..|...+.+..+|+.++..+
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555556666666666555555555555433
No 140
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.12 E-value=1.4e+02 Score=32.91 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=9.8
Q ss_pred HHhhhhhheeeccc
Q 003863 752 LLQGVRFAFRIHQF 765 (790)
Q Consensus 752 L~qgvrFAfRvhqF 765 (790)
=+..+|||-||.+.
T Consensus 369 Tl~TLrfA~rv~~i 382 (412)
T 3u06_A 369 SVKSLRFAASVNSC 382 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 45678888887654
No 141
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.01 E-value=1.6e+02 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=13.7
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQL 192 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv 192 (790)
+|+.|+-.|.+|+.+++.|++-+
T Consensus 54 ~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666543
No 142
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.69 E-value=4.8e+02 Score=25.15 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhhhHHHH--HHHHHHhhhcccchHHHHHHHHhHHHHhhhccch
Q 003863 571 HLLAIKADVATQGEFVN--SLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDE 621 (790)
Q Consensus 571 ~l~aIk~dv~~~~~~I~--~L~~eI~~~~~~dm~dlv~Fv~wlD~eL~~L~DE 621 (790)
||.+++.......+.|. .|..+++......|+++..++..+...|+=+++|
T Consensus 36 Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~e 88 (165)
T 1gs9_A 36 YLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEE 88 (165)
T ss_dssp HHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSH
T ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 55555544333333322 3557777777788888888887777777777655
No 143
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.52 E-value=1.6e+02 Score=27.03 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhchhHHHHHH
Q 003863 265 KIKAEALVLRHTNEDLSKQVE 285 (790)
Q Consensus 265 ~~~eE~~~Lr~~NE~L~~QlE 285 (790)
.+..|+..||.+|..|..+=+
T Consensus 69 eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 69 ELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766544
No 144
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=23.76 E-value=2.3e+02 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
.=|..||.++..|+.++..|+.++.+-
T Consensus 6 ~AI~~Lr~~~d~L~kkq~~L~~~i~~e 32 (79)
T 4abm_A 6 EAIQRLRDTEEMLSKKQEFLEKKIEQE 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999887754
No 145
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=23.67 E-value=17 Score=33.91 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.5
Q ss_pred HHHhHH
Q 003863 607 FVKWLD 612 (790)
Q Consensus 607 Fv~wlD 612 (790)
+..|+.
T Consensus 116 ~~~~l~ 121 (196)
T 3llu_A 116 LHITVS 121 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333444
No 146
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.34 E-value=3.6e+02 Score=23.19 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 003863 126 ELDSLRSLLQESKE 139 (790)
Q Consensus 126 EI~~LR~~V~eLqe 139 (790)
||+.|+++...|+.
T Consensus 2 el~~l~~~~~sLE~ 15 (84)
T 1gk4_A 2 EVDALKGTNESLER 15 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56666666655543
No 147
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.62 E-value=1.1e+02 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=14.4
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHhhhh
Q 003863 213 SSSSQNLEMEVVELRRLNKELQMEKRNLA 241 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr~NkeLQ~EkreL~ 241 (790)
+..+..|+.+-.+|+.....|+.|+..|.
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443
No 148
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=22.42 E-value=6.7e+02 Score=26.04 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 128 DSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 128 ~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+-+..-+..-++|+..+|.+++.-
T Consensus 45 eEIqkKLeAAEERRks~Ea~~lk~ 68 (240)
T 4f61_I 45 EEIQKKLEAAEERRKYQEAELLKH 68 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344556667789999999988876
No 149
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.15 E-value=4.1e+02 Score=23.41 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003863 127 LDSLRSLLQESKEREFKLQAELSEWKRN 154 (790)
Q Consensus 127 I~~LR~~V~eLqeRE~kLE~eLlEyKEQ 154 (790)
+++|-..|+.+=+.=.-|++++.++|++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555565555443
No 150
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.11 E-value=1.8e+02 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=18.6
Q ss_pred hHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 003863 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (790)
Q Consensus 170 Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~ 199 (790)
|.+.|...|..|+.|+..|+..+.++..+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665554443
No 151
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.09 E-value=3e+02 Score=24.90 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=12.3
Q ss_pred HHHHhhhhHHHHHHHHhhhHH
Q 003863 163 ELEAKKIENDEIVRRVGMLED 183 (790)
Q Consensus 163 qL~~k~~Ei~~L~~kI~sLea 183 (790)
-|..+..+|+.|+.+|.-+++
T Consensus 17 aL~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 17 ALVAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 344445566777766666663
No 152
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.06 E-value=57 Score=27.84 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=16.2
Q ss_pred hhchh-HHHHHHHHHHhhhhHHHHHHHHh
Q 003863 152 KRNPK-VLELERELEAKKIENDEIVRRVG 179 (790)
Q Consensus 152 KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~ 179 (790)
+.++. |.|||..|..+..+|..|..++-
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 66666666666666666554443
No 153
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.89 E-value=1.2e+02 Score=22.80 Aligned_cols=29 Identities=10% Similarity=-0.070 Sum_probs=22.9
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~ 242 (790)
++++.||..|+||=..|..|+.|-.-|..
T Consensus 1 ~RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 1 MKLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788999999999999998888766554
No 154
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=21.85 E-value=19 Score=30.88 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=3.6
Q ss_pred HHHHhhc
Q 003863 529 EFYHSLM 535 (790)
Q Consensus 529 elYrsL~ 535 (790)
++|+.+.
T Consensus 25 ~~~~~i~ 31 (162)
T 3sw1_A 25 QLLQSMV 31 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 155
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.70 E-value=3.5e+02 Score=29.93 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHHhhhHHHhhhHHHHHHHH
Q 003863 175 VRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 175 ~~kI~sLeaE~~rLq~qv~e~ 195 (790)
.+++..|..+..+|+..+...
T Consensus 83 tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcch
Confidence 555566666666665544433
No 156
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.57 E-value=4.2e+02 Score=23.38 Aligned_cols=57 Identities=26% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHHH
Q 003863 129 SLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (790)
Q Consensus 129 ~LR~~V~eLqeRE~kLE~eLlEyKEQE~I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e 194 (790)
.|---|+.|.-|=-.|+.|=++| ++.|+.-.+|+-.|.+++..=++|.++|++++..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQy---------EkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQY---------EWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 44445555555555555555555 3345666689999999999999999999998853
No 157
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=21.49 E-value=17 Score=33.23 Aligned_cols=8 Identities=0% Similarity=0.040 Sum_probs=3.7
Q ss_pred HHHhhccc
Q 003863 530 FYHSLMKR 537 (790)
Q Consensus 530 lYrsL~~r 537 (790)
|.+.|.+.
T Consensus 33 l~~~l~~~ 40 (199)
T 4bas_A 33 IINQVKPA 40 (199)
T ss_dssp HHHHHSCC
T ss_pred HHHHHhcC
Confidence 44455543
No 158
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.43 E-value=1.8e+02 Score=25.10 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 003863 225 ELRRLNKELQMEKRNLACKFSSMENQLTS 253 (790)
Q Consensus 225 ELRr~NkeLQ~EkreL~~KLd~ae~~~~~ 253 (790)
+|.+....|.-|+.+|..+|..++..+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777755543
No 159
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.22 E-value=3.5e+02 Score=30.46 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=10.1
Q ss_pred ccchHhHHHHHHHHHH
Q 003863 213 SSSSQNLEMEVVELRR 228 (790)
Q Consensus 213 e~~~~~LE~Ev~ELRr 228 (790)
..+|..||..+..+..
T Consensus 181 ~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 181 HKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777765543
No 160
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=21.16 E-value=20 Score=39.82 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=0.0
Q ss_pred HHHHhhc
Q 003863 529 EFYHSLM 535 (790)
Q Consensus 529 elYrsL~ 535 (790)
-||-||.
T Consensus 76 ~~~~s~~ 82 (422)
T 1pk8_A 76 GFFSSLS 82 (422)
T ss_dssp -------
T ss_pred chhhHHH
Confidence 4777775
No 161
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.15 E-value=3.7e+02 Score=26.70 Aligned_cols=39 Identities=8% Similarity=0.266 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHhhhh--hchHHHHHHHHHhh
Q 003863 262 IISKIKAEALVLRHTNEDLSKQVEGLQMSR--LNEVEELAYLRWVN 305 (790)
Q Consensus 262 ~va~~~eE~~~Lr~~NE~L~~QlE~f~~dR--~~dvEELv~LR~~N 305 (790)
+.+++...+...-++.+.|..++ .. + +.|+++|+. +|.+
T Consensus 129 L~~~L~~a~~e~eeeS~~l~~~F---~~-~~~e~dv~~Fl~-~y~~ 169 (192)
T 2p22_C 129 LKKKLEQNTKKLDEESSQLETTT---RS-IDSADDLDQFIK-NYLD 169 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC---SC-CCCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cC-CcccchHHHHHH-HHHH
Confidence 34444555544444444554443 33 5 778999995 4444
No 162
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.93 E-value=4.4e+02 Score=23.35 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=21.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 003863 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (790)
Q Consensus 214 ~~~~~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~ 250 (790)
..+.+|+.|=.+|.....+|+.++..+..-|...+..
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666555555543
No 163
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=20.45 E-value=25 Score=38.97 Aligned_cols=10 Identities=0% Similarity=-0.270 Sum_probs=4.8
Q ss_pred HHHHhhcCCc
Q 003863 358 FIKKFKKWPI 367 (790)
Q Consensus 358 li~KLKkW~~ 367 (790)
.+.+++.|-.
T Consensus 256 ~~~~~~~~~~ 265 (515)
T 3icg_A 256 EFDAVYNKFV 265 (515)
T ss_dssp HHHHHHHHTG
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 164
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.39 E-value=3.8e+02 Score=30.42 Aligned_cols=51 Identities=8% Similarity=0.114 Sum_probs=24.4
Q ss_pred HHHHHHHhh-hhchh-HHHHHHHHHHhhhhHHHHHHHHhhhHHHhhhHHHHHH
Q 003863 143 KLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (790)
Q Consensus 143 kLE~eLlEy-KEQE~-I~ELq~qL~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~ 193 (790)
..+.-+.+| .++|. |.-|++.+...-..|..|..-|..+..+.++|+..+.
T Consensus 104 dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 104 QLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 44444 4444444444444555555555555555555544443
No 165
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.20 E-value=1e+02 Score=25.50 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhhhHHHhhhHHHHHHHH
Q 003863 169 IENDEIVRRVGMLEDEKTSLSEQLAAL 195 (790)
Q Consensus 169 ~Ei~~L~~kI~sLeaE~~rLq~qv~e~ 195 (790)
..+..|..+|..|+.+|..|..++..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666677777666666554
No 166
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.07 E-value=2.3e+02 Score=30.93 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=10.8
Q ss_pred HHhhhhhheeeccc
Q 003863 752 LLQGVRFAFRIHQF 765 (790)
Q Consensus 752 L~qgvrFAfRvhqF 765 (790)
=+..+|||-||...
T Consensus 384 Tl~TL~fA~rv~~~ 397 (403)
T 4etp_A 384 TLNSLRFASKVNST 397 (403)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 45688999998764
Done!