Query 003863
Match_columns 790
No_of_seqs 257 out of 261
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 06:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 63.1 16 0.0011 31.2 9.1 37 164-200 3-39 (133)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 61.1 20 0.0014 30.0 9.1 37 165-201 4-40 (107)
3 d2ap3a1 a.24.27.1 (A:12-196) H 52.7 55 0.004 26.5 14.7 21 125-145 5-25 (185)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 44.6 60 0.0044 26.8 9.5 69 125-193 8-103 (107)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 38.9 40 0.0029 25.7 6.8 64 218-286 1-64 (66)
6 d2bnxa1 a.118.1.23 (A:133-475) 38.8 11 0.00079 37.6 4.3 43 270-315 206-249 (343)
7 d1i4da_ a.238.1.2 (A:) Arfapti 37.1 1.2E+02 0.0086 25.9 18.0 33 275-308 156-188 (200)
8 d1gqea_ e.38.1.1 (A:) Polypept 32.8 96 0.007 31.1 10.5 56 129-185 3-64 (362)
9 d1t33a2 a.121.1.1 (A:89-220) P 27.2 65 0.0047 27.9 7.0 75 558-632 31-106 (132)
10 d2gqba1 a.282.1.1 (A:1-130) Hy 27.1 26 0.0019 31.1 4.2 6 589-594 89-94 (130)
11 d2ap3a1 a.24.27.1 (A:12-196) H 26.6 1.5E+02 0.011 23.7 15.0 26 126-151 16-41 (185)
12 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.6 1.9E+02 0.014 23.9 11.6 29 123-151 6-34 (133)
13 d1qvra2 c.37.1.20 (A:149-535) 22.3 2.1E+02 0.015 28.5 10.8 132 171-303 234-385 (387)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=63.11 E-value=16 Score=31.23 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=25.6
Q ss_pred HHHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 003863 164 LEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (790)
Q Consensus 164 L~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~ 200 (790)
|+.-..++..|+..|..|+++...|+..+.++..+..
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~ 39 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777777766555
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=61.15 E-value=20 Score=29.98 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=24.5
Q ss_pred HHhhhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 003863 165 EAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (790)
Q Consensus 165 ~~k~~Ei~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q 201 (790)
+...+++..|..++..+.+....|+.++.++-.+.+.
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677777777777777777777663
No 3
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=52.67 E-value=55 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQ 145 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE 145 (790)
.+|..|...+..+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (185)
T d2ap3a1 5 KEIKAYLKQVDKIKDDEEPIK 25 (185)
T ss_dssp HHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444443
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.59 E-value=60 Score=26.75 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----hh--------------------chh---HHHHHHHHHHhhhhHHHHHHH
Q 003863 125 LELDSLRSLLQESKEREFKLQAELSEW----KR--------------------NPK---VLELERELEAKKIENDEIVRR 177 (790)
Q Consensus 125 ~EI~~LR~~V~eLqeRE~kLE~eLlEy----KE--------------------QE~---I~ELq~qL~~k~~Ei~~L~~k 177 (790)
.++..|+..++.+......|+.++-|. +| +.. +.+|..++..-..+|..|..+
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q 87 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666554 11 111 345555555555555555555
Q ss_pred HhhhHHHhhhHHHHHH
Q 003863 178 VGMLEDEKTSLSEQLA 193 (790)
Q Consensus 178 I~sLeaE~~rLq~qv~ 193 (790)
+..|+.+-..++..+.
T Consensus 88 ~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 88 EERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.89 E-value=40 Score=25.74 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccChhhHHHHHHHHHHHHhhhchhHHHHHHH
Q 003863 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (790)
Q Consensus 218 ~LE~Ev~ELRr~NkeLQ~EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~eE~~~Lr~~NE~L~~QlE~ 286 (790)
|++.|+.-|.+....|+-+..-+..||.-- ..+.+.+ .++|.+-++-...+...-+.|..+|+.
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL~N~----~F~~kAP-~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKLASP----GFREKAP-KEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTST----THHHHSC-TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCh----HHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888888888888888888744 2345566 357876666666555555555555443
No 6
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.83 E-value=11 Score=37.62 Aligned_cols=43 Identities=23% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHh-hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHHhhhhhhc
Q 003863 270 ALVLR-HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (790)
Q Consensus 270 ~~~Lr-~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacLR~EL~~~ 315 (790)
+..|| ..+++|..|+++|.+.+++|.+||.. |+.+. ..++.++
T Consensus 206 l~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~~-~~~~~--~~d~~~~ 249 (343)
T d2bnxa1 206 LQELREIENEDMKVQLCVFDEQGDEDFFDLKG-RLDDI--RMEMDDF 249 (343)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHCCCH
T ss_pred HHHHHccCChHHHHHHHHHHHHHHhHHHHHHh-ccccc--ccccCCH
Confidence 45566 67999999999999999999999998 66662 2355443
No 7
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.13 E-value=1.2e+02 Score=25.86 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=25.1
Q ss_pred hhchhHHHHHHHHhhhhhchHHHHHHHHHhhHHH
Q 003863 275 HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCL 308 (790)
Q Consensus 275 ~~NE~L~~QlE~f~~dR~~dvEELv~LR~~NacL 308 (790)
..|.++..+|+.|+..|..++..-+. .++++++
T Consensus 156 ~~~~~~~~~l~~l~~~r~~~~~~~l~-~~~~~~~ 188 (200)
T d1i4da_ 156 KLRGDVAIKLKFLEENKIKVMHKQLL-LFHNAVS 188 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHH
Confidence 66779999999999999877765443 5566664
No 8
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=32.82 E-value=96 Score=31.08 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhh-----hhHHHHHHHHhhhHHHh
Q 003863 129 SLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKK-----IENDEIVRRVGMLEDEK 185 (790)
Q Consensus 129 ~LR~~V~eLqeRE~kLE~eLlEy-KEQE~I~ELq~qL~~k~-----~Ei~~L~~kI~sLeaE~ 185 (790)
-|++.|.+|++|=..|..-| .+ .-++.+.||+.+|.--. .....|.++++.|+...
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~f-Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iV 64 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYL-DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVV 64 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHH
Confidence 35566666666655555332 33 22333777777776433 24444555555444443
No 9
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=27.19 E-value=65 Score=27.91 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=59.7
Q ss_pred hhhhhHhhhccchhhHHH-HHHHhhhhHHHHHHHHHHhhhcccchHHHHHHHHhHHHHhhhccchhhhhhhcCCCc
Q 003863 558 RSSMIGEIENRSSHLLAI-KADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPE 632 (790)
Q Consensus 558 r~~mi~Ei~nRS~~l~aI-k~dv~~~~~~I~~L~~eI~~~~~~dm~dlv~Fv~wlD~eL~~L~DEraVL~~F~~Pe 632 (790)
..=|+.|+.+-+..+..| +..++-....+..++.++-+....|..-..--+.-+-+.|.+.+-=..||...||++
T Consensus 31 ~~l~~RE~~~PT~a~~~l~~~~i~P~~~~l~~ll~~~~G~~~~d~~~~~~~~sivGq~l~f~var~~~l~~lgw~~ 106 (132)
T d1t33a2 31 SKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQ 106 (132)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHTHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred HHHHHHHccCchHHHHHHHHHHhhhHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 335789999999999987 677888888888899999888777765444444567777888888888999999986
No 10
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=27.12 E-value=26 Score=31.11 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.8
Q ss_pred HHHHHh
Q 003863 589 LIREVN 594 (790)
Q Consensus 589 L~~eI~ 594 (790)
|+.|+.
T Consensus 89 LA~EL~ 94 (130)
T d2gqba1 89 LAKELG 94 (130)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 455544
No 11
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=26.59 E-value=1.5e+02 Score=23.65 Aligned_cols=26 Identities=4% Similarity=0.081 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 126 ELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 126 EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
++..+...+..+..+-..|+.++..+
T Consensus 16 ~~~~~~~~~~~~~~k~~~~e~~~~~~ 41 (185)
T d2ap3a1 16 KIKDDEEPIKTVGKKIAELDEKKKKL 41 (185)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555544555555444
No 12
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.65 E-value=1.9e+02 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003863 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (790)
Q Consensus 123 ~~~EI~~LR~~V~eLqeRE~kLE~eLlEy 151 (790)
+..+++.|+..++.|+.+-..|+..+.+|
T Consensus 6 L~~~~~~l~~~l~~l~~~i~~l~~~~~e~ 34 (133)
T d1fxkc_ 6 IVAQLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777
No 13
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=22.27 E-value=2.1e+02 Score=28.51 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhhcccc--cchHhHHHHHHHHHHHHHHHH----------H
Q 003863 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAINMGS--SSSQNLEMEVVELRRLNKELQ----------M 235 (790)
Q Consensus 171 i~~L~~kI~sLeaE~~rLq~qv~e~~~~~~q---~ee~~~~~~e~e--~~~~~LE~Ev~ELRr~NkeLQ----------~ 235 (790)
||+|..-.+...-+....-+++....+-..| +.++++++.+.. .++.+++.+..+|+...+.|+ .
T Consensus 234 idlld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~ 313 (387)
T d1qvra2 234 IDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 313 (387)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhhhhhhhhhhhhcccChhhHHHHHH-HHHHHHhhhchhHHHHHHHHhhhhh----chHHHHHHHHH
Q 003863 236 EKRNLACKFSSMENQLTSLAKASESDIISKIK-AEALVLRHTNEDLSKQVEGLQMSRL----NEVEELAYLRW 303 (790)
Q Consensus 236 EkreL~~KLd~ae~~~~~~~~~~Es~~va~~~-eE~~~Lr~~NE~L~~QlE~f~~dR~----~dvEELv~LR~ 303 (790)
+.++|..+|+.+...+......-.-+..+.+. .++-.|..+-+.+..+.....+-|. .++.+.|- ||
T Consensus 314 ~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVS-rW 385 (387)
T d1qvra2 314 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVS-RW 385 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCcCccCHHHHHHHHH-hh
Done!