BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003864
         (790 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
 pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
 pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
          Length = 1086

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 23/86 (26%)

Query: 58  QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL 117
           Q +A+   L ++ V+R  EI+T +  + GL +                       +KKE+
Sbjct: 725 QMYAATSQLISEAVARDGEIATKMPKVRGLRT-----------------------IKKEI 761

Query: 118 LELVRAIVEIGERLKGVKEALRDGRL 143
           L+LV   VE  E L+ V+  +  G L
Sbjct: 762 LKLVETFVEKAEDLQAVRSQMIPGLL 787


>pdb|2RDC|A Chain A, Crystal Structure Of A Putative Lipid Binding Protein
           (Gsu0061) From Geobacter Sulfurreducens Pca At 1.80 A
           Resolution
 pdb|2RDC|B Chain B, Crystal Structure Of A Putative Lipid Binding Protein
           (Gsu0061) From Geobacter Sulfurreducens Pca At 1.80 A
           Resolution
          Length = 153

 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 95  KEVKEII--DEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRE 152
           K+V EI   DEV+AK+ E         L+ A      ++   +      R R   EELRE
Sbjct: 28  KKVIEITGHDEVAAKLLEG--------LIDAGTRYFSKVVEXEHRXASARFRLDGEELRE 79

Query: 153 LKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNR 204
           L + L      A E L+  L      +  E  +EL    +E  +  + E+NR
Sbjct: 80  LTETLDRSRRLAHESLISSLHVFNRYIVKEYGEELKEAGIEGGIFPKPEANR 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,925,310
Number of Sequences: 62578
Number of extensions: 818706
Number of successful extensions: 2116
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 25
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)