Query 003864
Match_columns 790
No_of_seqs 162 out of 205
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2163 Centromere/kinetochore 100.0 1.8E-97 4E-102 812.0 54.3 686 1-748 2-712 (719)
2 PF06248 Zw10: Centromere/kine 100.0 3.4E-92 7.4E-97 828.2 60.8 564 21-593 2-592 (593)
3 PF11989 Dsl1_C: Retrograde tr 100.0 2.8E-31 6.1E-36 280.6 18.5 253 448-751 22-279 (291)
4 PF10475 DUF2450: Protein of u 98.5 3.8E-05 8.3E-10 83.3 25.0 203 26-256 28-231 (291)
5 PF04100 Vps53_N: Vps53-like, 97.9 0.076 1.6E-06 60.0 35.3 335 29-415 21-383 (383)
6 KOG2163 Centromere/kinetochore 97.7 0.0015 3.3E-08 74.5 18.9 371 20-411 21-414 (719)
7 KOG2176 Exocyst complex, subun 97.6 0.3 6.5E-06 58.3 49.5 134 21-156 34-169 (800)
8 KOG2307 Low density lipoprotei 97.5 0.14 3.1E-06 58.4 30.2 289 28-374 45-353 (705)
9 KOG2180 Late Golgi protein sor 96.7 0.9 1.9E-05 53.7 26.9 291 29-369 36-337 (793)
10 KOG3691 Exocyst complex subuni 96.7 0.075 1.6E-06 63.5 18.5 165 28-197 45-209 (982)
11 PF04124 Dor1: Dor1-like famil 96.7 0.13 2.7E-06 57.3 19.7 160 25-190 6-165 (338)
12 PF10392 COG5: Golgi transport 96.4 0.083 1.8E-06 50.6 13.7 114 11-130 15-128 (132)
13 PF04437 RINT1_TIP1: RINT-1 / 96.2 0.83 1.8E-05 53.5 23.7 342 318-712 66-450 (494)
14 PF04048 Sec8_exocyst: Sec8 ex 95.4 0.21 4.6E-06 48.4 11.9 103 21-129 32-134 (142)
15 KOG2115 Vacuolar sorting prote 95.1 1.5 3.2E-05 53.2 19.6 202 31-243 241-445 (951)
16 PF06046 Sec6: Exocyst complex 95.0 1.3 2.9E-05 52.6 19.6 232 450-707 243-495 (566)
17 PF06148 COG2: COG (conserved 94.8 0.0098 2.1E-07 57.0 0.6 75 30-106 27-101 (133)
18 PF15469 Sec5: Exocyst complex 94.3 2.4 5.2E-05 42.7 16.6 142 48-197 3-150 (182)
19 PF10191 COG7: Golgi complex c 93.5 25 0.00055 43.5 31.2 130 30-161 35-164 (766)
20 KOG0412 Golgi transport comple 92.0 33 0.00072 41.1 49.1 199 519-737 555-765 (773)
21 PF11988 Dsl1_N: Retrograde tr 91.7 12 0.00026 41.3 17.9 221 108-337 38-286 (354)
22 KOG0994 Extracellular matrix g 88.4 4.8 0.0001 50.0 12.5 139 9-161 1479-1632(1758)
23 KOG2069 Golgi transport comple 87.9 19 0.00041 42.2 16.5 156 29-194 34-193 (581)
24 PF08700 Vps51: Vps51/Vps67; 87.7 2.4 5.2E-05 37.1 7.5 61 28-88 21-81 (87)
25 PF04912 Dynamitin: Dynamitin 80.7 54 0.0012 37.2 16.3 113 27-140 88-227 (388)
26 PF04740 LXG: LXG domain of WX 79.3 47 0.001 33.8 14.0 61 30-90 28-89 (204)
27 KOG2911 Uncharacterized conser 76.4 36 0.00079 38.6 12.6 114 30-143 244-365 (439)
28 PF06160 EzrA: Septation ring 75.3 31 0.00067 41.2 12.8 92 93-184 220-315 (560)
29 PF04048 Sec8_exocyst: Sec8 ex 73.6 71 0.0015 30.9 12.6 100 28-133 42-141 (142)
30 PF10498 IFT57: Intra-flagella 70.7 1.2E+02 0.0027 34.1 15.3 148 25-187 190-347 (359)
31 PF09763 Sec3_C: Exocyst compl 70.4 2.7E+02 0.0058 34.3 20.9 162 29-196 1-179 (701)
32 KOG4182 Uncharacterized conser 69.7 1.2E+02 0.0026 35.0 14.5 90 70-161 79-168 (828)
33 PF06160 EzrA: Septation ring 69.3 1.7E+02 0.0038 34.9 17.2 49 113-161 159-207 (560)
34 PHA02562 46 endonuclease subun 67.1 2.7E+02 0.0058 33.0 18.5 25 64-88 226-250 (562)
35 PRK02224 chromosome segregatio 64.9 2.3E+02 0.005 35.6 18.1 40 121-160 626-665 (880)
36 COG1579 Zn-ribbon protein, pos 62.8 2.1E+02 0.0046 30.3 15.2 41 172-212 160-200 (239)
37 PF05791 Bacillus_HBL: Bacillu 62.2 1.8E+02 0.004 29.4 13.7 136 31-187 46-182 (184)
38 KOG2347 Sec5 subunit of exocys 61.1 4.2E+02 0.009 33.1 33.9 153 25-190 183-346 (934)
39 KOG1961 Vacuolar sorting prote 60.5 1.8E+02 0.004 34.5 14.2 164 6-192 34-211 (683)
40 PF07889 DUF1664: Protein of u 60.2 66 0.0014 30.6 9.0 17 70-86 66-82 (126)
41 PF03357 Snf7: Snf7; InterPro 58.4 93 0.002 30.3 10.5 27 30-56 12-38 (171)
42 KOG2346 Uncharacterized conser 57.5 28 0.00061 40.1 7.0 147 37-193 57-207 (636)
43 PF05082 Rop-like: Rop-like; 56.0 81 0.0018 26.6 7.7 56 28-83 4-62 (66)
44 TIGR03185 DNA_S_dndD DNA sulfu 55.7 3.2E+02 0.0069 33.3 16.4 47 66-112 392-438 (650)
45 PF06419 COG6: Conserved oligo 54.8 3.3E+02 0.0072 33.0 16.1 101 58-160 38-144 (618)
46 PRK04778 septation ring format 54.6 1E+02 0.0023 36.8 11.8 69 93-161 224-295 (569)
47 KOG0972 Huntingtin interacting 54.5 1.1E+02 0.0024 33.0 10.4 38 27-64 221-261 (384)
48 KOG0972 Huntingtin interacting 54.0 3.2E+02 0.007 29.7 14.7 75 109-184 267-351 (384)
49 KOG0994 Extracellular matrix g 53.7 3.9E+02 0.0085 34.4 16.0 20 28-47 1544-1563(1758)
50 KOG0971 Microtubule-associated 52.4 4.1E+02 0.0089 33.3 15.6 85 50-137 402-490 (1243)
51 PF08317 Spc7: Spc7 kinetochor 52.2 1.9E+02 0.0041 32.0 12.6 18 32-49 148-165 (325)
52 PF14276 DUF4363: Domain of un 51.6 94 0.002 28.9 8.7 89 72-161 23-111 (121)
53 PF10168 Nup88: Nuclear pore c 51.0 3.3E+02 0.0071 33.7 15.3 32 109-140 633-664 (717)
54 COG4477 EzrA Negative regulato 50.4 2.9E+02 0.0062 32.6 13.6 66 96-161 140-210 (570)
55 KOG2211 Predicted Golgi transp 49.6 5.6E+02 0.012 31.2 21.7 125 27-161 69-203 (797)
56 PF07426 Dynactin_p22: Dynacti 49.3 2.9E+02 0.0063 27.8 14.7 34 166-199 138-171 (174)
57 PF10498 IFT57: Intra-flagella 48.9 1.1E+02 0.0023 34.6 9.9 29 113-141 292-320 (359)
58 KOG1853 LIS1-interacting prote 48.6 3.3E+02 0.0072 28.9 12.5 26 57-82 86-111 (333)
59 PF10186 Atg14: UV radiation r 48.4 3.7E+02 0.0079 28.7 14.5 21 173-193 138-158 (302)
60 PF06008 Laminin_I: Laminin Do 48.3 3.7E+02 0.0079 28.7 18.6 108 30-137 49-168 (264)
61 PF12128 DUF3584: Protein of u 48.3 6.4E+02 0.014 33.2 18.3 54 21-75 218-273 (1201)
62 PF13066 DUF3929: Protein of u 47.9 6.4 0.00014 31.3 0.1 16 762-777 8-23 (65)
63 KOG0996 Structural maintenance 47.7 3.2E+02 0.0069 35.2 14.2 123 30-160 862-996 (1293)
64 COG1392 Phosphate transport re 47.5 2.7E+02 0.0059 29.0 12.1 55 27-81 43-103 (217)
65 COG3524 KpsE Capsule polysacch 47.1 1.8E+02 0.0038 31.8 10.6 98 56-155 208-316 (372)
66 KOG0971 Microtubule-associated 44.5 5E+02 0.011 32.6 14.8 57 9-66 386-442 (1243)
67 PF06721 DUF1204: Protein of u 44.1 77 0.0017 31.9 6.9 28 24-51 41-68 (228)
68 PRK11281 hypothetical protein; 43.5 2.5E+02 0.0054 36.5 13.1 17 25-41 35-51 (1113)
69 PRK10884 SH3 domain-containing 43.1 1.8E+02 0.0039 30.1 9.9 25 29-53 89-113 (206)
70 KOG3647 Predicted coiled-coil 42.0 4.4E+02 0.0095 28.3 12.3 23 105-127 143-165 (338)
71 KOG0996 Structural maintenance 41.9 8E+02 0.017 31.9 16.4 28 24-51 776-803 (1293)
72 smart00787 Spc7 Spc7 kinetocho 41.6 2.6E+02 0.0057 30.8 11.4 94 28-127 174-289 (312)
73 PTZ00464 SNF-7-like protein; P 41.2 4.3E+02 0.0094 27.5 12.4 21 30-50 15-35 (211)
74 PF04100 Vps53_N: Vps53-like, 40.4 6E+02 0.013 28.9 17.9 35 124-160 87-121 (383)
75 TIGR00606 rad50 rad50. This fa 40.1 9.5E+02 0.021 32.0 18.2 82 116-197 1069-1155(1311)
76 PF04091 Sec15: Exocyst comple 40.0 5.4E+02 0.012 28.3 13.8 138 516-662 106-246 (311)
77 COG1561 Uncharacterized stress 39.7 4.6E+02 0.0099 28.6 12.4 27 29-55 157-183 (290)
78 PF12325 TMF_TATA_bd: TATA ele 39.5 2.5E+02 0.0054 26.6 9.3 24 34-58 17-40 (120)
79 TIGR03185 DNA_S_dndD DNA sulfu 39.0 3.3E+02 0.0072 33.1 13.0 25 59-83 392-416 (650)
80 KOG2148 Exocyst protein Sec3 [ 38.2 5E+02 0.011 31.5 13.2 128 69-197 215-367 (867)
81 TIGR00996 Mtu_fam_mce virulenc 38.1 5.1E+02 0.011 27.8 13.1 15 28-42 129-143 (291)
82 KOG4360 Uncharacterized coiled 38.0 5.8E+02 0.013 30.0 13.4 133 28-161 161-302 (596)
83 PRK01156 chromosome segregatio 37.7 4.6E+02 0.0099 33.2 14.4 35 127-161 714-749 (895)
84 PF06248 Zw10: Centromere/kine 36.6 3.3E+02 0.0071 32.8 12.3 99 36-137 10-111 (593)
85 TIGR00606 rad50 rad50. This fa 36.1 8.9E+02 0.019 32.3 17.1 25 27-51 823-847 (1311)
86 PRK04778 septation ring format 36.1 8.3E+02 0.018 29.2 20.2 39 123-161 419-468 (569)
87 PF12325 TMF_TATA_bd: TATA ele 35.4 3.3E+02 0.0072 25.7 9.5 72 16-87 6-83 (120)
88 PRK13658 hypothetical protein; 35.2 92 0.002 25.1 4.7 33 125-157 7-39 (59)
89 PF04111 APG6: Autophagy prote 35.2 2.5E+02 0.0055 31.0 10.1 52 30-86 6-57 (314)
90 PRK09039 hypothetical protein; 35.1 6.4E+02 0.014 28.2 13.4 48 31-83 44-92 (343)
91 PF04136 Sec34: Sec34-like fam 33.5 4.8E+02 0.01 25.7 13.1 125 65-195 14-145 (157)
92 PF06698 DUF1192: Protein of u 33.4 55 0.0012 26.9 3.4 30 23-52 18-47 (59)
93 PRK11637 AmiB activator; Provi 33.0 8E+02 0.017 28.1 17.5 23 28-50 42-64 (428)
94 COG1722 XseB Exonuclease VII s 32.9 2E+02 0.0042 25.3 7.0 53 352-412 11-63 (81)
95 PF06705 SF-assemblin: SF-asse 32.5 6.2E+02 0.013 26.7 15.4 9 166-174 224-232 (247)
96 PF08112 ATP-synt_E_2: ATP syn 32.2 1.2E+02 0.0025 24.3 4.8 36 27-62 5-40 (56)
97 KOG4674 Uncharacterized conser 31.2 6.8E+02 0.015 34.2 14.2 80 29-111 801-881 (1822)
98 PF03954 Lectin_N: Hepatic lec 31.2 70 0.0015 30.8 4.2 52 38-90 53-105 (138)
99 PF07889 DUF1664: Protein of u 30.9 2.9E+02 0.0063 26.4 8.3 21 67-87 45-65 (126)
100 PRK03918 chromosome segregatio 30.5 1.2E+03 0.025 29.3 18.0 6 188-193 745-750 (880)
101 PRK10869 recombination and rep 30.3 1E+03 0.022 28.5 16.7 31 21-53 201-231 (553)
102 PF07373 CAMP_factor: CAMP fac 30.2 6.7E+02 0.015 26.4 13.8 132 20-161 6-148 (228)
103 PLN03217 transcription factor 30.0 2.9E+02 0.0062 24.5 7.3 51 23-87 14-78 (93)
104 PF03148 Tektin: Tektin family 29.8 8.7E+02 0.019 27.5 13.7 118 64-185 210-334 (384)
105 PRK10929 putative mechanosensi 29.7 8.8E+02 0.019 31.7 14.7 18 25-42 22-39 (1109)
106 KOG0993 Rab5 GTPase effector R 29.7 8.9E+02 0.019 27.7 13.2 134 42-184 311-450 (542)
107 PF04156 IncA: IncA protein; 29.4 5.8E+02 0.013 25.4 12.3 20 30-49 85-104 (191)
108 PHA02562 46 endonuclease subun 29.2 1E+03 0.022 28.1 16.1 20 30-49 252-271 (562)
109 KOG0018 Structural maintenance 29.2 8.6E+02 0.019 31.3 13.9 21 175-195 993-1013(1141)
110 PF15030 DUF4527: Protein of u 28.8 7.3E+02 0.016 26.4 12.7 31 21-51 4-34 (277)
111 PF14906 DUF4495: Domain of un 28.6 5E+02 0.011 28.7 10.6 66 575-640 93-160 (321)
112 PRK04863 mukB cell division pr 28.5 1.6E+03 0.035 30.4 18.4 20 599-618 1104-1123(1486)
113 PF10186 Atg14: UV radiation r 27.4 7.7E+02 0.017 26.2 13.5 25 30-54 24-48 (302)
114 PF07544 Med9: RNA polymerase 27.3 2.9E+02 0.0063 24.1 7.2 56 67-122 23-79 (83)
115 COG1842 PspA Phage shock prote 27.1 7.5E+02 0.016 26.0 14.7 121 29-160 27-155 (225)
116 PF10241 KxDL: Uncharacterized 26.5 2.7E+02 0.0058 24.7 6.9 60 31-90 23-82 (88)
117 PF04124 Dor1: Dor1-like famil 26.0 8.9E+02 0.019 26.8 12.7 20 515-534 295-314 (338)
118 PF04012 PspA_IM30: PspA/IM30 25.7 7.4E+02 0.016 25.4 14.3 29 29-57 26-54 (221)
119 PF12777 MT: Microtubule-bindi 25.7 3.8E+02 0.0082 29.9 9.7 92 67-161 10-102 (344)
120 PF12805 FUSC-like: FUSC-like 25.5 8.6E+02 0.019 26.1 14.8 36 21-56 124-159 (284)
121 PF06103 DUF948: Bacterial pro 25.3 4.4E+02 0.0096 23.0 8.2 17 33-49 26-42 (90)
122 KOG4360 Uncharacterized coiled 24.5 9E+02 0.02 28.5 12.0 19 171-189 278-296 (596)
123 COG4477 EzrA Negative regulato 24.5 4.5E+02 0.0097 31.1 9.8 50 30-87 313-362 (570)
124 TIGR01010 BexC_CtrB_KpsE polys 24.3 5.3E+02 0.012 28.7 10.6 106 9-121 192-297 (362)
125 cd07624 BAR_SNX7_30 The Bin/Am 24.1 7.7E+02 0.017 25.1 16.9 40 27-66 15-60 (200)
126 PF10602 RPN7: 26S proteasome 23.9 7.3E+02 0.016 24.7 11.8 86 72-161 14-107 (177)
127 COG2433 Uncharacterized conser 23.8 4.7E+02 0.01 31.4 9.9 20 31-50 420-439 (652)
128 TIGR02492 flgK_ends flagellar 23.7 2.3E+02 0.0051 31.2 7.5 8 202-209 220-227 (322)
129 KOG0995 Centromere-associated 23.5 1.3E+03 0.029 27.5 16.3 26 4-29 196-221 (581)
130 PF04849 HAP1_N: HAP1 N-termin 23.1 1E+03 0.022 26.2 13.4 26 28-53 162-187 (306)
131 PF07798 DUF1640: Protein of u 23.1 7.6E+02 0.016 24.6 12.2 51 26-86 44-94 (177)
132 PLN02372 violaxanthin de-epoxi 23.0 1.1E+03 0.023 27.2 12.0 22 20-49 356-377 (455)
133 PF09730 BicD: Microtubule-ass 22.6 1.5E+03 0.031 28.2 14.2 113 30-151 31-166 (717)
134 KOG4515 Uncharacterized conser 22.4 3.8E+02 0.0082 27.2 7.6 15 70-84 118-132 (217)
135 PF04129 Vps52: Vps52 / Sac2 f 21.7 1.4E+03 0.029 27.0 13.9 50 146-197 105-154 (508)
136 COG1256 FlgK Flagellar hook-as 21.4 2.4E+02 0.0051 33.8 7.3 16 49-64 109-124 (552)
137 PRK02224 chromosome segregatio 21.3 1.7E+03 0.036 28.0 17.4 21 30-50 472-492 (880)
138 PF10392 COG5: Golgi transport 21.3 7.1E+02 0.015 23.6 10.2 24 67-90 28-51 (132)
139 PRK06975 bifunctional uroporph 21.0 1.6E+03 0.034 27.5 16.4 47 135-182 432-478 (656)
140 PF05531 NPV_P10: Nucleopolyhe 20.8 4.8E+02 0.01 22.6 7.0 18 32-49 10-27 (75)
141 KOG0250 DNA repair protein RAD 20.8 1.9E+03 0.041 28.4 14.7 160 10-187 325-487 (1074)
142 PF05791 Bacillus_HBL: Bacillu 20.8 4.3E+02 0.0093 26.7 8.1 28 27-54 104-131 (184)
143 PF04912 Dynamitin: Dynamitin 20.7 9E+02 0.02 27.4 11.6 19 32-50 208-226 (388)
144 PF07439 DUF1515: Protein of u 20.6 6.2E+02 0.013 23.5 8.0 59 31-89 6-64 (112)
145 KOG0979 Structural maintenance 20.5 1.2E+03 0.026 29.9 12.8 98 9-106 263-373 (1072)
146 cd07666 BAR_SNX7 The Bin/Amphi 20.4 1E+03 0.023 25.2 18.1 116 22-142 50-176 (243)
147 PRK12714 flgK flagellar hook-a 20.4 3.1E+02 0.0066 33.4 8.1 7 202-208 217-223 (624)
148 cd07600 BAR_Gvp36 The Bin/Amph 20.4 1E+03 0.023 25.2 14.5 74 34-107 111-192 (242)
149 PF04156 IncA: IncA protein; 20.2 8.5E+02 0.018 24.3 10.2 22 30-51 78-99 (191)
150 PHA03247 large tegument protei 20.1 1.9E+03 0.04 31.6 15.1 54 144-197 1667-1736(3151)
151 PF14164 YqzH: YqzH-like prote 20.1 1.2E+02 0.0025 25.5 3.0 36 19-54 19-55 (64)
No 1
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-97 Score=812.00 Aligned_cols=686 Identities=23% Similarity=0.296 Sum_probs=577.9
Q ss_pred CcccccchhhhhhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHH
Q 003864 1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKS-KVQSYIASHHQDFASLFSLCNDTVSRTDEIST 79 (790)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~-~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~ 79 (790)
+++||.++|.++.|.. |||+..|.++..++.+.++ +|++.|.++|++|.|.+.+...+.+++.+|..
T Consensus 2 ~~~l~Es~n~~g~lek------------edl~~~it~ls~rv~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~r 69 (719)
T KOG2163|consen 2 IDALAESENSYGDLEK------------EDLKNGITSLSQRVVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTR 69 (719)
T ss_pred chHHHHHhccccchhh------------hhhcCCccccchHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhh
Confidence 3678888887766554 5555555556677778888 89999999999999999999999999999999
Q ss_pred hHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc
Q 003864 80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV 159 (790)
Q Consensus 80 ~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~ 159 (790)
+|+++++.|++ +..+.+...-..++.-+++++ ..+-.+++.+++..+-.+.+.....+.+.++++.|+++.+.++.
T Consensus 70 di~~l~~~i~s-dv~d~L~e~~~~~~d~e~qle---v~l~~l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~ 145 (719)
T KOG2163|consen 70 DISNLIDQIAS-DVPDMLAEIKSQAQDCENQLE---VQLMKLVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEG 145 (719)
T ss_pred hHHHHHHHhhh-hhHHHHHHhhcchhhhhhHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999877 566666666666666667776 34445777888888888888888889999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC-------eEEEEEEeecCCC---CcccHHHHHH---
Q 003864 160 GDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESN-------RVLVKYQLTVDGL---DGIELRTVLE--- 226 (790)
Q Consensus 160 ~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~w~~lv~~~~~~~-------~i~v~~~i~~~~~---~~~~L~~vl~--- 226 (790)
.+....+..+.+.+..++.-++.+..+++...|.+...|..-.. ...+..++-.++. ...++.....
T Consensus 146 ~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~~~~w~~~~s~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~i 225 (719)
T KOG2163|consen 146 IGRDGFDMSVLKHLAAVLRILKYNERYELSADYERAMNWPKLSSIQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAMI 225 (719)
T ss_pred cCcccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcccCccHHHHHHHHHHhheeeeeccchhhhhhcCChHHHHHH
Confidence 87777888889999999999999999999999998888743221 1112222211110 1234444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhcCCCCcccccccCCCCcccccceEEeeccCCccccCCChhHHHHHHHHHHHH
Q 003864 227 AMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKF 306 (790)
Q Consensus 227 AL~~lg~l~~~l~~l~~~L~~~il~Pli~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~F 306 (790)
|+..+++..+..+ +..|+++++.|+.+.|...++++. ..+ ....++...... .+..+.|.++..|++-
T Consensus 226 a~s~l~E~~~~~k--~~~Lldyclapvasrp~~hvyie~--~p~----~~~~Rf~~~~~~----~s~a~~f~~v~~VlEs 293 (719)
T KOG2163|consen 226 AISQLPERLDAWK--IVILLDYCLAPVASRPGVHVYIED--NPT----PDQTRFLINQKP----RSKADKFIDVAKVLES 293 (719)
T ss_pred HHHHhHHHhhhHH--HHHHHHHhHHHhccCccceeeecc--CCC----cceeeeeecccc----CchHhhhhHHHHHHHH
Confidence 4445555444444 578999999999999977666553 222 244555443322 3667888888888888
Q ss_pred HHHHccc---------CCCchHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcCcccCCC
Q 003864 307 IHKRICL---------QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASD 377 (790)
Q Consensus 307 L~~~L~~---------~n~~l~~~lg~~i~~~ls~~lI~~~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~lgf~~~~~ 377 (790)
+.-.|+. ....+.+++|++||.+|+++|+++||.++||.+..++.+|+.+|+.+.+||..|+++.|++..+
T Consensus 294 l~l~Lh~l~~~e~evt~~~~~~emigDhi~e~l~~~l~k~cl~~avP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~d 373 (719)
T KOG2163|consen 294 LELKLHVLHSHELEVTTGKTFTEMIGDHIEEQLITMLLKDCLAIAVPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFD 373 (719)
T ss_pred hhhcccccccchhhhcccchHHHHHhHHHHHHHHHHHHHhhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 7755441 2467999999999999999999999999999999999999999999999999999997776554
Q ss_pred ccchhHhhHHHhHHHHHHHHHhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccceeecccH
Q 003864 378 NKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAA 457 (790)
Q Consensus 378 ~~~~~L~~~v~~v~~~f~~krr~~~L~~aR~l~~~~d~~~~~~~~~~~~wg~~~~~~~~~~~~~~~~~~~~e~c~IS~~~ 457 (790)
. .+.|.+|++++++||++|||.++|++||++|.++-.+.|..-. ....+++....|.+|+|+||+++
T Consensus 374 q-~~allkfaed~ethfanRkc~~il~kARnLi~~~~~~~v~vip------------ntha~hvanl~FsfprC~vSeSa 440 (719)
T KOG2163|consen 374 Q-KSALLKFAEDTETHFANRKCFAILSKARNLINETYDKLVTVIP------------NTHAEHVANLYFSFPRCTVSESA 440 (719)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceecc------------cccHHHHhhhhccCcceeecHHH
Confidence 3 4699999999999999999999999999999976655554321 12234555677999999999999
Q ss_pred HHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccceeeeeecchHHHHHHHhhhhhhhccC
Q 003864 458 SQLMKLVHQILQDICLSS-TRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSD 536 (790)
Q Consensus 458 ~~l~~Li~~~L~ea~~ss-~~~a~~L~~~~~~il~LyralvP~~h~~~l~s~p~~a~l~yNDC~YLA~~L~~l~~~~~~~ 536 (790)
.++|+|++++|.+++.++ +++|.+||+++|+|+.||.++||++|++.|+|+||+|++|||||||++|+..+.++
T Consensus 441 ~~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~vVP~khrell~siPq~AaifhNNCmyi~h~~~~h~f----- 515 (719)
T KOG2163|consen 441 INFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIVVPRKHRELLSSIPQMAAIFHNNCMYISHCIMTHSF----- 515 (719)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHhcccHHHHHHHHhhhc-----
Confidence 999999999999999887 89999999999999999999999999999999999999999999999998777664
Q ss_pred CCcchhhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHhhcccC
Q 003864 537 FPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPL 616 (790)
Q Consensus 537 lp~~l~~~~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~a~gf~~~~~~~~~e~~e~av~q~l~~L~~L~~~W~~v 616 (790)
.+..+|+|++|+||.+|++||+.|+.+|+++|+++|++++||.++++...++.++++|+||++||+.|+++|++|
T Consensus 516 -----~g~~~ladlaprlr~~a~ecf~kQv~~q~seL~e~l~sa~~Fen~~~ee~~ssa~klVrQcL~qLkll~~vw~~v 590 (719)
T KOG2163|consen 516 -----LGEPLLADLAPRLRTVAAECFEKQVTRQRSELTEYLESASIFENLPAEEMSSSADKLVRQCLLQLKLLAKVWREV 590 (719)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcHHhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 346689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcCCCCCCCCccchhccccc
Q 003864 617 LLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPS 696 (790)
Q Consensus 617 Lp~svy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~e~~~~~~~~~vps 696 (790)
||+.+||++||+|+|+++.++|++|+.++|||++++.+|+.||..+++.++++|.++.+ . +.+..||++
T Consensus 591 Lpe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~~~p~vfa~~~e-------~----~et~v~v~~ 659 (719)
T KOG2163|consen 591 LPEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLEVVPNVFAYKEE-------T----KETDVCVRE 659 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhhhcChhh-------c----cCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999988643 1 246789999
Q ss_pred hHhHHHHHHHhcCChhhHHHHhhcCC-cccCCCCHHHHHHHHHhhcccccccc
Q 003864 697 LCKFRKLAELLDMPLRSITAAWESGE-LLSCGFTLSEVQCNLFSRYFCWVLNS 748 (790)
Q Consensus 697 W~Kf~~L~~iL~asL~dI~~~W~~G~-ll~~~Fs~~Ev~~LIkAlF~~~~~~~ 748 (790)
|++|+++.++|++||.||+.||.+|+ |+++.|+.+||++||||+|.++.-|.
T Consensus 660 w~pl~el~~mL~asLmeIt~rW~dgkGplaa~fsrsEVk~lIkALFqDs~wRa 712 (719)
T KOG2163|consen 660 WFPLNELVFMLGASLMEITHRWFDGKGPLAAHFSRSEVKGLIKALFQDSQWRA 712 (719)
T ss_pred hccHHHHHHHhCchHhHHHHHHhcCCccHHhhccHHHHHHHHHHHhhchHHHH
Confidence 99999999999999999999999999 99999999999999999999997664
No 2
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=100.00 E-value=3.4e-92 Score=828.16 Aligned_cols=564 Identities=34% Similarity=0.531 Sum_probs=501.0
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhH-HHHHhhhccCccchhHHH
Q 003864 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDL-SDILGLISYRPIDKEVKE 99 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i-~~l~~~i~~~~~~~~l~~ 99 (790)
.|++||++|||+++|++|.++++++|++|+++|.++|++|+|.++++.+++.+++++.++| +.+++.+++ +....+..
T Consensus 2 ~~~~~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~-~i~~~l~~ 80 (593)
T PF06248_consen 2 ASSGPLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIEN-EIQPQLRD 80 (593)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999 445555777 78889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC-CCCChhhHHHHHHHHHH
Q 003864 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD-ENASEPLVYGLLRKEWL 178 (790)
Q Consensus 100 ~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~-~~~~~~~I~~~L~~~~~ 178 (790)
+.++++.+++|+++++++++++++|+++++.|++++.++++|+|+.|++.|++++..|+.++ ....+++|++.|+.+|.
T Consensus 81 a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~ 160 (593)
T PF06248_consen 81 AAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYS 160 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999873 33568999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCC--------eEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 003864 179 VCFEEIQELLVKFVESAVRFEKESN--------RVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVI 250 (790)
Q Consensus 179 ~l~~~i~~~L~~~w~~lv~~~~~~~--------~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il 250 (790)
.+++.+.++|.+.|+++|+|++.++ .+.++++++.++. ...|+++|+||+++|++++++++|++.|++|||
T Consensus 161 ~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~-~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii 239 (593)
T PF06248_consen 161 ELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSES-QESLQDVLQALEILGILDYKLKKFSKFLLEHII 239 (593)
T ss_pred HHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcc-cchHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987655 4667777766643 245999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcccccceEEeeccCCccccCCChhHHHHHHHHHHHHHHHHcccCC---CchHHHhhhhhh
Q 003864 251 SPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN---GSWVRCFGRLTW 327 (790)
Q Consensus 251 ~Pli~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~L~~~n---~~l~~~lg~~i~ 327 (790)
.|+|.+|+..+.++.. +++. ...+|+..+. ..+...++++++|++|..||+||+++|++.+ .++++.||+.||
T Consensus 240 ~PlI~~p~~~~~~~~~-~~~~--~~~~l~~~~~-~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~ 315 (593)
T PF06248_consen 240 KPLISHPSSIVSVEES-EDGS--VEITLSYEPD-SSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIW 315 (593)
T ss_pred HHHhcCCCCccccccc-CCCc--ceEEEEeecc-cccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHH
Confidence 9999999776654431 2210 1246776665 3344668999999999999999999996533 258899999999
Q ss_pred HHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcCcccCCCccchhHhhHHHhHHHHHHHHHhHHHHHHHH
Q 003864 328 PRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKAR 407 (790)
Q Consensus 328 ~~ls~~lI~~~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~lgf~~~~~~~~~~L~~~v~~v~~~f~~krr~~~L~~aR 407 (790)
|+|+++||++||.|+||++.++|++|+.+++++.+||++|+++||++++ .++|.+|++|+++||++|||+++|++||
T Consensus 316 ~~ls~~lI~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~---~~~L~~~~~~i~~~f~~kr~~~iL~~AR 392 (593)
T PF06248_consen 316 PRLSELLISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSD---NTELSEFVDNIETHFANKRCQDILDKAR 392 (593)
T ss_pred HHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC---chHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999866 3799999999999999999999999999
Q ss_pred HhhhhcCCCCCCCCCC---------C----CCCCC-CCCCCCCCCcccccccccccceeecccHHHHHHHHHHHHHhhhh
Q 003864 408 NLLLQCDFAVPQESTG---------K----DPICK-NDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICL 473 (790)
Q Consensus 408 ~l~~~~d~~~~~~~~~---------~----~~wg~-~~~~~~~~~~~~~~~~~~~e~c~IS~~~~~l~~Li~~~L~ea~~ 473 (790)
++|.++.++.+.++++ . ..|.. .++...++++...+.+|.+|+|+||+++++||+|++++|.||+.
T Consensus 393 ~lm~~~~~~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea~~ 472 (593)
T PF06248_consen 393 DLMLRDLHDTVKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEACK 472 (593)
T ss_pred HHHhcccccceEecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHHhc
Confidence 9999988877643211 0 11100 01111223444556789999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccceeeeeecchHHHHHHHhhhhhhhccCCCcchhhHhhHhhhhHH
Q 003864 474 SSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPR 553 (790)
Q Consensus 474 ss~~~a~~L~~~~~~il~LyralvP~~h~~~l~s~p~~a~l~yNDC~YLA~~L~~l~~~~~~~lp~~l~~~~~fvd~~~~ 553 (790)
+++.+|.+||+++|+|++||+++||++|++.|+++||+||+||||||||||||++++++|+.++|++++...+|+|++|+
T Consensus 473 ~~~~~a~~l~~~~r~i~~ly~~~vP~~h~~~l~~ip~~aalf~NdC~ylah~l~~l~~~~~~~~~~~~~~~~~f~d~v~~ 552 (593)
T PF06248_consen 473 SSERCAAQLFQTARDIFELYRAVVPVYHKKLLESIPQQAALFHNDCMYLAHHLLTLGHEYRSKLPSPLKEIATFVDLVPR 552 (593)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHccHHHHhhcccccHHHHhHhcchHHHHHHHHHhHHHHhhcCcchhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 003864 554 FHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFE 593 (790)
Q Consensus 554 fr~~ae~~~q~qi~~~~~~L~e~L~~a~gf~~~~~~~~~e 593 (790)
||++|+.+|.+||++|+++|.++|++|+||.++++..+|.
T Consensus 553 lr~~g~~~~~~q~~~q~~~l~~~l~~a~~F~~~~~~~~~~ 592 (593)
T PF06248_consen 553 LRRLGEECFSAQMQRQRSQLLEILDGASGFSNTDDEQNYS 592 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhhccC
Confidence 9999999999999999999999999999999999877663
No 3
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. Binding sites for coatomer are found on a disorganised region between the C and N termini of Dsl1 []. The C-terminal domain is involved in binding to the Sec39 subunit of the Dsl1p complex []. The N-terminal complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. ; PDB: 3K8P_C.
Probab=99.97 E-value=2.8e-31 Score=280.57 Aligned_cols=253 Identities=22% Similarity=0.302 Sum_probs=173.7
Q ss_pred ccceeecccHHHHHHHHHHHHHhhhh-cchHHHHHHH-HHHHHHHHHHHHhhhhhhHHhhccccceeeeeecchHHHHHH
Q 003864 448 SERCVVTKAASQLMKLVHQILQDICL-SSTRVAFEFY-HAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQE 525 (790)
Q Consensus 448 ~e~c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~-~~~~~il~LyralvP~~h~~~l~s~p~~a~l~yNDC~YLA~~ 525 (790)
.++++||+.|+.+..++.+...++.. +...+..+-+ +....+..+|.|+++.+|+ +. .+++|||..||+.+
T Consensus 22 ~~~i~vT~iP~~~~~i~~~f~~~~~~i~~~~~~~~~~~yk~nlLqt~~~A~~~~~y~----~~---~~~LynD~~yl~~~ 94 (291)
T PF11989_consen 22 TEKIKVTQIPDKFIKIINEFQKDSEDISQNKIDSQYFSYKANLLQTLFLAMSSVKYP----NN---WFQLYNDLKYLIQE 94 (291)
T ss_dssp ---EEEETHHHHHHHHHHHHHHHHHTTTTTSSHHHHH-HHHHHHHHHHHHHHHHH------S----HHHHHHHHHHHHHH
T ss_pred cceeEeehhhHHHHHHHHHHHHHHHhhccccccHHHHHHHhHHHHHHHHHHhhhhcc----cc---HHHHHHHHHHHHhc
Confidence 78999999999999999999999853 2222222211 2222234568888888774 22 49999999999987
Q ss_pred HhhhhhhhccCCCcchhhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCcchhhhhhhHHHHHHHHHH
Q 003864 526 ILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGA-DGFQNTHQIQQFESAKFSIEQVVF 604 (790)
Q Consensus 526 L~~l~~~~~~~lp~~l~~~~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~a-~gf~~~~~~~~~e~~e~av~q~l~ 604 (790)
.+ .+.+|.++.. ..+...++.++..+.++|++. +||. +..+...|+.++++.+.
T Consensus 95 ----~~-----------~L~r~~el~~-------~~~~~~~~~~~k~v~~ll~~~~~~~~---~~e~~~~~~~~~~~l~~ 149 (291)
T PF11989_consen 95 ----NP-----------KLSRLQELNW-------NQLEQELQSELKIVTDLLDGQLQNFS---DNERNPSWDITIDQLLP 149 (291)
T ss_dssp -----T-----------T-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH---HTSSS---HHHHHTHHH
T ss_pred ----ch-----------hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhh---hccCChHHHHHHHHHHH
Confidence 11 1334444443 344555666666677888664 4444 33455678999999999
Q ss_pred HHHH-HHhhcccCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcCCCC
Q 003864 605 ILEK-VHIIWEPLLLPSTYNRSMCTVLESVFS-RITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKT 682 (790)
Q Consensus 605 ~L~~-L~~~W~~vLp~svy~~~ig~Lv~~v~~-~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~ 682 (790)
.++. +...|++ +..+.|.+.+|.|++++++ +|+++|++++||||.+|++|+.||+.+.... .+. ..
T Consensus 150 ~i~~~~~~~~~~-~~~~~~~~~i~~li~fv~n~~ii~~I~~~~dISE~qS~~Ls~li~~l~~~t-~i~--~l-------- 217 (291)
T PF11989_consen 150 YIQKEILEPLQQ-INHSEFKQFIGSLINFVYNDWIINSILSLDDISEKQSENLSELIDLLNNNT-EIP--SL-------- 217 (291)
T ss_dssp HHHHTHHHHHHT-T-----HHHHHHHHHHHHHTTHHHHHHTSS---HHHHHHHHHHHHHHHHHT---G--GG--------
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHcccc-chh--hc--------
Confidence 9988 5555555 5889999999999999976 8999999999999999999999999874432 221 11
Q ss_pred CCCCccchhccccchHhHHHHHHHhcCChhhHHHHhhcCCcccCCCCHHHHHHHHHhhccccccccccc
Q 003864 683 EGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEVQCNLFSRYFCWVLNSCYV 751 (790)
Q Consensus 683 ~e~~~~~~~~~vpsW~Kf~~L~~iL~asL~dI~~~W~~G~ll~~~Fs~~Ev~~LIkAlF~~~~~~~~~~ 751 (790)
+..+.|+++|.||++++++|++|||||++||++|+++ +|+++||+++|||+||+++||++|+
T Consensus 218 -----~~~~~y~~s~~Kf~~v~~lL~~hLkDIm~~Fy~Gel~--~fsTdElI~lIkslFadS~lR~n~I 279 (291)
T PF11989_consen 218 -----NITPKYVESWNKFNNVGFLLNNHLKDIMEMFYQGELY--DFSTDELIQLIKSLFADSPLRDNYI 279 (291)
T ss_dssp -----TT-HHHHHHHHHHHHHHHHHT--HHHHHHHHHTTGGG--GS-HHHHHHHHHHHS---HHHHHHH
T ss_pred -----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh--cccHHHHHHHHHHHhcCChHHHHHH
Confidence 1356899999999999999999999999999999998 8999999999999999999999986
No 4
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.49 E-value=3.8e-05 Score=83.31 Aligned_cols=203 Identities=17% Similarity=0.127 Sum_probs=156.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHH
Q 003864 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (790)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~ 105 (790)
++-+++....++|+...+-+..++...|.++|+.|...+....++..++..-...++.++..+.. +...+...-=..-
T Consensus 28 ~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~--~~~~~~~~~L~Il 105 (291)
T PF10475_consen 28 LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKS--ADENLTKSGLEIL 105 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHH
Confidence 66789999999999999999999999999999999999998888877777777777766665544 2333222111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHH
Q 003864 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQ 185 (790)
Q Consensus 106 ~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~ 185 (790)
+.++.-+....++..|+.|+.+.+.-..++..+.+|+|..|++.+.+.+..++.. .....++.|..++.+....+.
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l----~~~~c~~~L~~~L~e~~~~i~ 181 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL----KGYSCVRHLSSQLQETLELIE 181 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----ccchHHHHHhHHHHHHHHHHH
Confidence 2334444566788889999999999999999999999999999999999999765 356778889999999999999
Q ss_pred HHHHHHHhhhhc-cccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhcC
Q 003864 186 ELLVKFVESAVR-FEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSY 256 (790)
Q Consensus 186 ~~L~~~w~~lv~-~~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~Pli~~ 256 (790)
++|...+.++.. ++ +.....+..|-..+|.... +.+++..+++.++-..
T Consensus 182 ~~ld~~l~~~~~~Fd------------------~~~Y~~v~~AY~lLgk~~~----~~dkl~~~f~~~i~~~ 231 (291)
T PF10475_consen 182 EQLDSDLSKVCQDFD------------------PDKYSKVQEAYQLLGKTQS----AMDKLQMHFTSAIHST 231 (291)
T ss_pred HHHHHHHHHHHHhCC------------------HHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHH
Confidence 999999987543 22 3456778888888875555 5555666666665433
No 5
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.87 E-value=0.076 Score=59.97 Aligned_cols=335 Identities=14% Similarity=0.154 Sum_probs=195.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~ 108 (790)
.+|...|.++..++.++..+|.+.++..-..=...-+.-.+......+|-.+|..+++.-+.+ ...|.++.+--
T Consensus 21 ~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~s------E~~V~~it~dI 94 (383)
T PF04100_consen 21 SNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEES------EQMVQEITRDI 94 (383)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 389999999999999999999988886543111112233455666777888888777764442 23333333333
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003864 109 KEARV----KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEI 184 (790)
Q Consensus 109 ~el~~----~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i 184 (790)
++|+. .+....+|+.|+-+...+++.+..+..++|.+++..|..+...+...... ++..-+..|..++..++..+
T Consensus 95 k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~y-ksi~~I~~L~~~i~~l~~~L 173 (383)
T PF04100_consen 95 KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPY-KSIPQIAELSKRIDQLQNEL 173 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHH
Confidence 33322 24455578888888888888999999999999999999999999888765 44444555999999999999
Q ss_pred HHHHHHHHhhhhccccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhhhhhhcCCCCcccc
Q 003864 185 QELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGL-AKVADLKIKYVISPAVSYGSPITFV 263 (790)
Q Consensus 185 ~~~L~~~w~~lv~~~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l-~~l~~~L~~~il~Pli~~~~~~~~v 263 (790)
.+++..-|+.++ +..+.- + ++.....+-.|..+++.|+... .++-+.+.++.+.+... .+
T Consensus 174 ~~qI~~df~~~f---~~~~~~--------~--~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY~~-----iF- 234 (383)
T PF04100_consen 174 KEQIFEDFEELF---GSQGDE--------S--PGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEYRR-----IF- 234 (383)
T ss_pred HHHHHHHHHHHh---ccCCcc--------c--ccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH-----HH-
Confidence 999999998765 111100 0 1123344555666655554432 33444444444444310 01
Q ss_pred cccCCCCcccccceEEeeccCCccccCCChhHHHHHHHHHHHHHHHH---cccC----CCchHHHhhhhhhHHHHHHHHH
Q 003864 264 EELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKR---ICLQ----NGSWVRCFGRLTWPRISELIIS 336 (790)
Q Consensus 264 ~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~---L~~~----n~~l~~~lg~~i~~~ls~~lI~ 336 (790)
.+++ + ...|. +++.-|.=+..+++-..+. +++. ...+...|+...-..+...+-.
T Consensus 235 ---~~~~-e--~~~Ld------------~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~ 296 (383)
T PF04100_consen 235 ---REND-E--AASLD------------NIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSK 296 (383)
T ss_pred ---cccc-c--ccchh------------hHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 0 01111 2222233333333333332 2221 1245677888888887654433
Q ss_pred hhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcCcccCCC-------c---------cchhHhhHHHhHHHHHHHHHhH
Q 003864 337 NFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASD-------N---------KDARLSNFAENVEVHFASRKKT 400 (790)
Q Consensus 337 ~~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~lgf~~~~~-------~---------~~~~L~~~v~~v~~~f~~krr~ 400 (790)
. +.++ +..-+...++.|.+||+.|..- |.++.. + -.+.++.==+..=..|++....
T Consensus 297 ~------~~~~-dv~~Ll~aLq~T~~FE~~L~~r-F~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk 368 (383)
T PF04100_consen 297 R------KSEL-DVKLLLKALQKTLEFEKELAKR-FAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDK 368 (383)
T ss_pred c------CCCC-cHHHHHHHHHHHHHHHHHHHHH-hcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHH
Confidence 1 2232 4567778999999999999754 211100 0 0123444223333577776666
Q ss_pred HHHHHHHHhhhhcCC
Q 003864 401 EILAKARNLLLQCDF 415 (790)
Q Consensus 401 ~~L~~aR~l~~~~d~ 415 (790)
.+.+..-..+....|
T Consensus 369 ~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 369 NLSEKLDKFISEEKW 383 (383)
T ss_pred HHHHHHHHHHhhcCC
Confidence 666665555554333
No 6
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.0015 Score=74.54 Aligned_cols=371 Identities=18% Similarity=0.112 Sum_probs=235.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHH
Q 003864 20 TDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKE 99 (790)
Q Consensus 20 ~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~ 99 (790)
.+|.+||++++.+..+.|+.+++...++|+.....++..+|+.+.+.+.|+....+.+.++..+...-+.+.+.+-+.+.
T Consensus 21 ~~~it~ls~rv~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~rdi~~l~~~i~sdv~d~L~e~~~~~~d~e~ql 100 (719)
T KOG2163|consen 21 KNGITSLSQRVVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTRDISNLIDQIASDVPDMLAEIKSQAQDCENQL 100 (719)
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHhhcchhhhhhHH
Confidence 37889999999999999999999999999999999999999999999999999999999998887776666444444444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHhhcCCC-CCChhhHHHHH
Q 003864 100 IIDEV-SAKMKEARVKKELLELVRAIVEIGERLKGVKEALRD----GRLRFAAEELRELKKDLRVGDE-NASEPLVYGLL 173 (790)
Q Consensus 100 ~v~~~-~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~----~~l~~A~~~L~~l~~~l~~~~~-~~~~~~I~~~L 173 (790)
.+..+ .+..+++....+....++..+.+...+...+++... |+..-++..++.+...++..+. ..-++..+...
T Consensus 101 ev~l~~l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~ 180 (719)
T KOG2163|consen 101 EVQLMKLVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEGIGRDGFDMSVLKHLAAVLRILKYNERYELSADYER 180 (719)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 44444 233566777777777788887777777777776555 7777677667766666555432 12355666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhh
Q 003864 174 RKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVG---ILDYGLAKVADLKIKYVI 250 (790)
Q Consensus 174 ~~~~~~l~~~i~~~L~~~w~~lv~~~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg---~l~~~l~~l~~~L~~~il 250 (790)
...|..+.+ +++.+.+.-...+++.+.+..++.+.......+....++.+.+.++..+ ++++.+..++..-..|++
T Consensus 181 ~~~w~~~~s-~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~ia~s~l~E~~~~~k~~~Lldyclapvasrp~~hvy 259 (719)
T KOG2163|consen 181 AMNWPKLSS-IQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAMIAISQLPERLDAWKIVILLDYCLAPVASRPGVHVY 259 (719)
T ss_pred HHhcccCcc-HHHHHHHHHHhheeeeeccchhhhhhcCChHHHHHHHHHHhHHHhhhHHHHHHHHHhHHHhccCccceee
Confidence 888888888 9999999998888888877655544433222112345667778888888 889999888777555555
Q ss_pred hhhhcCCCCcccccccCCCCcccccceEEeeccCCccccCCChhHHHHHHHHHHHHHHH---------HcccC-CCchHH
Q 003864 251 SPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHK---------RICLQ-NGSWVR 320 (790)
Q Consensus 251 ~Pli~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~---------~L~~~-n~~l~~ 320 (790)
.|-...+ . .+. ..+..++- +.+...++++.|+.++..-+..++. ++.++ .-.+-+
T Consensus 260 ie~~p~~--~-~~R-----------f~~~~~~~-s~a~~f~~v~~VlEsl~l~Lh~l~~~e~evt~~~~~~emigDhi~e 324 (719)
T KOG2163|consen 260 IEDNPTP--D-QTR-----------FLINQKPR-SKADKFIDVAKVLESLELKLHVLHSHELEVTTGKTFTEMIGDHIEE 324 (719)
T ss_pred eccCCCc--c-eee-----------eeeccccC-chHhhhhHHHHHHHHhhhcccccccchhhhcccchHHHHHhHHHHH
Confidence 5432222 1 111 11222221 1212234555555555522221111 11110 011222
Q ss_pred HhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcCcccCCCc--c-chhH-hhHHHhHHHHHHH
Q 003864 321 CFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDN--K-DARL-SNFAENVEVHFAS 396 (790)
Q Consensus 321 ~lg~~i~~~ls~~lI~~~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~lgf~~~~~~--~-~~~L-~~~v~~v~~~f~~ 396 (790)
.+.+.+.. ++|+- -.|.=.+-..+.+.+-+..++-+.|.+.++.+|+...+.. + .... +-|++.--..-+.
T Consensus 325 ~l~~~l~k---~cl~~--avP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~dq~~allkfaed~ethfanRkc~~il~ 399 (719)
T KOG2163|consen 325 QLITMLLK---DCLAI--AVPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFDQKSALLKFAEDTETHFANRKCFAILS 399 (719)
T ss_pred HHHHHHHH---hhccc--ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 22222 2354566667777777777777777777777777666522 0 1122 2367777777777
Q ss_pred HHhHHHHHHHHHhhh
Q 003864 397 RKKTEILAKARNLLL 411 (790)
Q Consensus 397 krr~~~L~~aR~l~~ 411 (790)
+-|+-+...--++..
T Consensus 400 kARnLi~~~~~~~v~ 414 (719)
T KOG2163|consen 400 KARNLINETYDKLVT 414 (719)
T ss_pred HHHHHHHHHHhhhce
Confidence 888777766655443
No 7
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.3 Score=58.29 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=104.9
Q ss_pred CCCCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHH
Q 003864 21 DQTAP--LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (790)
Q Consensus 21 ~~~~~--l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~ 98 (790)
+|+.+ +++......+++|+.++..=-.||-.+=+.||.+|+.+.+.-.....++++|+.++.+...++++ .+.++-
T Consensus 34 gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~--~g~eLi 111 (800)
T KOG2176|consen 34 GPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQE--SGKELI 111 (800)
T ss_pred hhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 56532 45556778899999999998889999999999999999988888888888888888877777766 466666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 003864 99 EIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKD 156 (790)
Q Consensus 99 ~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~ 156 (790)
...+++-+-+.+=..-...+..++....+-......++.+.+|+|-.|++.++.+++.
T Consensus 112 v~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~ 169 (800)
T KOG2176|consen 112 VKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKV 169 (800)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6666666654333334555556777777777777889999999999999999988765
No 8
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.14 Score=58.43 Aligned_cols=289 Identities=14% Similarity=0.090 Sum_probs=163.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~ 107 (790)
+.+|..+=+.|.....-++...-+.|+..|+||..+.--.-++-..+++++..|..+.+.|.. ..+.+..++....+.
T Consensus 45 ~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s--~rgsV~ea~~alr~q 122 (705)
T KOG2307|consen 45 KVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKS--TRGSVGEAERALRQQ 122 (705)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHH--HHhhHHHHHHHHHHH
Confidence 457888888888888899999999999999999998655555555555555555555554433 233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 003864 108 MKEARVKKELLELVRAIVEIGERLKGVKEA----------LRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEW 177 (790)
Q Consensus 108 ~~el~~~~~~l~~l~~l~~i~~~L~~~~~~----------l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~ 177 (790)
..|...+++....+..+..+...+...... .+.-.+..+|-.+.+++--....... .+.....+.
T Consensus 123 ~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnqlkf~a~h~k~~-----l~p~~e~ri 197 (705)
T KOG2307|consen 123 CSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQLKFHASHLKGS-----LFPHSEERI 197 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHHHHHhhcc-----cCcchhhHH
Confidence 333333333333333333333333333332 22234666666666665544443311 222256677
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhcCC
Q 003864 178 LVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYG 257 (790)
Q Consensus 178 ~~l~~~i~~~L~~~w~~lv~~~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~Pli~~~ 257 (790)
...+..+++.|..++...++-+ ...++..+.+-..++.-+..=.-|.. .|+.|.|..-
T Consensus 198 a~~~~~L~qsl~~lf~eglqsa------------------~~~l~nclriYatld~t~~ae~lfr~----~vvapyi~ev 255 (705)
T KOG2307|consen 198 AAEKIILSQSLAVLFAEGLQSA------------------AGDLQNCLRIYATLDLTESAESLFRL----LVVAPYIAEV 255 (705)
T ss_pred hhHHHHHHHHHHHHHHHHhhcc------------------HHHHHHHHHHHHHHhhchhHHHHHHH----HHHHHHHHHH
Confidence 7777788888888887654311 23455555555555444443333222 3678876543
Q ss_pred CCcccccccCCCCcccccceEEeeccCCccccCCChhHHHHHHHHHHHHHHHHcc-------c---CCCchHHHhhhhhh
Q 003864 258 SPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRIC-------L---QNGSWVRCFGRLTW 327 (790)
Q Consensus 258 ~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~L~-------~---~n~~l~~~lg~~i~ 327 (790)
.. ++ ... .++..+......+++|+..|-+ + .+-+....+...+|
T Consensus 256 I~----eq-----------~~e-----------~sp~gl~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l 309 (705)
T KOG2307|consen 256 IN----EQ-----------HDE-----------TSPSGLLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLL 309 (705)
T ss_pred Hh----hh-----------hcc-----------CCchhHHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHH
Confidence 11 10 000 2333445555666777764432 1 12356778888999
Q ss_pred HHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcCccc
Q 003864 328 PRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFIS 374 (790)
Q Consensus 328 ~~ls~~lI~~~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~lgf~~ 374 (790)
+.+...|=...=+-.+|.+.. .|-+--..+.+|...+++...-+
T Consensus 310 ~~ilt~iek~mps~f~Pgnp~---~F~ekyk~t~DFl~~le~~~tC~ 353 (705)
T KOG2307|consen 310 TFILTFIEKCMPSVFVPGNPR---LFHEKYKLTQDFLDNLESSHTCR 353 (705)
T ss_pred HHHHHHHHHhcccccCCCCcH---HHHHHHHHHHHHHHhccccCcCc
Confidence 999887766655556777764 34455566788888887765544
No 9
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.9 Score=53.71 Aligned_cols=291 Identities=13% Similarity=0.104 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~ 108 (790)
.+++..|.++..++.++..++.+-++..-..=...-.-..|......+|..+|..+++.-+++ ...|.++.+--
T Consensus 36 ~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~T------e~~V~eiTrdI 109 (793)
T KOG2180|consen 36 TNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAEST------EAMVQEITRDI 109 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHH
Confidence 388999999999999999999987775544333333445678888999999999999886653 23344444433
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003864 109 KEARV----KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEI 184 (790)
Q Consensus 109 ~el~~----~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i 184 (790)
++|++ .+..+.+|+.|.-+.....+.+..+.+++|-+|+..|+.+-+.++..... ++..=+.-|.+.+..++..+
T Consensus 110 KqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Y-k~v~~I~~Ls~si~~~k~~l 188 (793)
T KOG2180|consen 110 KQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAY-KSVDEIANLSESIDKLKKSL 188 (793)
T ss_pred HhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHH
Confidence 34432 12333356666666666777788899999999999999888888776554 44445566999999999999
Q ss_pred HHHHHHHHhhhhccccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhcCCCCccccc
Q 003864 185 QELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVE 264 (790)
Q Consensus 185 ~~~L~~~w~~lv~~~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~Pli~~~~~~~~v~ 264 (790)
.+++-.-|+.+..-.+ . + + ....++.+-.|..+++.++..+.. .+++.++..-+..-..+ +.+
T Consensus 189 ~~qi~~df~~~F~~~~---~---~-----~--~~~~l~~l~daC~v~d~lepsvre---elIkwf~~qqL~ey~~I-F~e 251 (793)
T KOG2180|consen 189 LSQIFQDFKAAFSGGE---T---H-----E--EALLLQKLSDACLVVDALEPSVRE---ELIKWFCSQQLEEYEQI-FRE 251 (793)
T ss_pred HHHHHHHHHHhcCCCC---C---C-----C--CccHHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHHHHHHH-Hhc
Confidence 9999999998754211 1 1 1 123455566677777767664432 44555554433221111 111
Q ss_pred ccCCCCcccccceEEeeccCCccccCCChhHHHHHHHHHH---HHHHHHccc----CCCchHHHhhhhhhHHHHHHHHHh
Q 003864 265 ELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVV---KFIHKRICL----QNGSWVRCFGRLTWPRISELIISN 337 (790)
Q Consensus 265 ~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~---~FL~~~L~~----~n~~l~~~lg~~i~~~ls~~lI~~ 337 (790)
+.+ ...|. ..+..|.-+...+ +=.+...+. ....+...|+...-.++...+.+.
T Consensus 252 --n~E-----~a~LD------------kidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~ 312 (793)
T KOG2180|consen 252 --NEE-----AASLD------------KLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRR 312 (793)
T ss_pred --cHh-----hhhhh------------hHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 01111 2223344333333 333332221 123466788888888888766654
Q ss_pred hcccCCCCChhhhhhHHHHHHHHHHHHHHHHH
Q 003864 338 FLSKVVPEDASKLADFQKIIDHTSEFEAALKE 369 (790)
Q Consensus 338 ~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~ 369 (790)
. .--++.-|...+++|.+||+.|..
T Consensus 313 ~-------~~~~v~lll~Alq~TleFE~~L~k 337 (793)
T KOG2180|consen 313 K-------KEPDVKLLLFALQSTLEFEKFLDK 337 (793)
T ss_pred h-------hCccHHHHHHHHHHHHHHHHHHHH
Confidence 2 223567778899999999999864
No 10
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.075 Score=63.51 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=118.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~ 107 (790)
.++....+++|+..-++--+.+.+.+..|+.+|-.-+.+-++.......=+..|.++|+.++. ...-+...=+++++.
T Consensus 45 ~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~--~k~ll~~~rdeLqkl 122 (982)
T KOG3691|consen 45 TEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEA--CKELLNTRRDELQKL 122 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCHHHHHHH
Confidence 346788899999999999999999999999998777666666555555555555555544433 222233333344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 003864 108 MKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQEL 187 (790)
Q Consensus 108 ~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~ 187 (790)
--+-..-+-++++|.+|.++.+.=+.+++.+...+|..|...|..++..|++. ...--+...|+.+...++..+...
T Consensus 123 w~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~---L~~VEgLs~l~~ele~~~~~L~~~ 199 (982)
T KOG3691|consen 123 WAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP---LDGVEGLSDLRSELEGLLSHLEDI 199 (982)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---chhhhhhhHHHHHHHHHHHHHHHH
Confidence 22222234577899999999999999999999999999999999999998766 356677888888888887777766
Q ss_pred HHHHHhhhhc
Q 003864 188 LVKFVESAVR 197 (790)
Q Consensus 188 L~~~w~~lv~ 197 (790)
|.+..-+.+-
T Consensus 200 L~eELv~ily 209 (982)
T KOG3691|consen 200 LIEELVSILY 209 (982)
T ss_pred HHHHHHHHHH
Confidence 6665544443
No 11
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.69 E-value=0.13 Score=57.25 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=104.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHH
Q 003864 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (790)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~ 104 (790)
-++-+.|.+...+|...+.++..++.+.-.++|.-|....+...+.......+.+.++++.+.+.. .......-...+
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~--L~~~~~~f~~~~ 83 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPE--LDEACQRFSSKA 83 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999888888888888888888776665432 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003864 105 SAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEI 184 (790)
Q Consensus 105 ~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i 184 (790)
.+...+.+.+..++...+++.++-+.=.=.+.++.+|.|.+|++....++..-...+ +..+++.+..++......+
T Consensus 84 ~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~----~~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 84 QKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFP----NIPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHH
Confidence 222233333333333333333333222334688999999999999988888766665 3556666666666544444
Q ss_pred HHHHHH
Q 003864 185 QELLVK 190 (790)
Q Consensus 185 ~~~L~~ 190 (790)
..+|-.
T Consensus 160 l~~Li~ 165 (338)
T PF04124_consen 160 LSQLIN 165 (338)
T ss_pred HHHHHH
Confidence 444433
No 12
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.39 E-value=0.083 Score=50.58 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=82.3
Q ss_pred hhhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhcc
Q 003864 11 RDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (790)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~ 90 (790)
+++|.++...+++.- |+..-++||...++++..++.+.+..+|.+....+....++..-+..+...++.|...++-
T Consensus 15 n~ll~~~~~~~~~~l----d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~R 90 (132)
T PF10392_consen 15 NDLLKSTNNNSDSEL----DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYER 90 (132)
T ss_pred HHHHHhhcCCCCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567776665444433 9999999999999999999999999999999998888777777777777777766655443
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 91 RPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGER 130 (790)
Q Consensus 91 ~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~ 130 (790)
+..++..-=+.+....+.++..++...+|+.+..+-..
T Consensus 91 --L~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 91 --LRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555566666666666666666554433
No 13
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.23 E-value=0.83 Score=53.50 Aligned_cols=342 Identities=14% Similarity=0.159 Sum_probs=180.7
Q ss_pred hHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHc-Cccc-CCCccchhHhhHHHhHHHHHH
Q 003864 318 WVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEM-MFIS-ASDNKDARLSNFAENVEVHFA 395 (790)
Q Consensus 318 l~~~lg~~i~~~ls~~lI~~~L~~aIP~s~~~L~~f~~vi~~~~~Fe~~L~~l-gf~~-~~~~~~~~L~~~v~~v~~~f~ 395 (790)
....|-..+.|.+.+++-.. +|...++-.-|..++.++..|.+.|++. |+.+ ....+..-|. -+.+=..|+
T Consensus 66 ~~~~fi~~ll~~~~~Kl~~~-----l~~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~--~~~~~~~Wl 138 (494)
T PF04437_consen 66 AREEFIRGLLPPVREKLRSD-----LPELLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLC--QPDWFDRWL 138 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----H--TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhc--chHHHHHHH
Confidence 44556666777777766665 5777777888899999999999999988 4433 0001122332 122223455
Q ss_pred HHHhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccceeecccHHHHHHHHHHHHHhhhhcc
Q 003864 396 SRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSS 475 (790)
Q Consensus 396 ~krr~~~L~~aR~l~~~~d~~~~~~~~~~~~wg~~~~~~~~~~~~~~~~~~~~e~c~IS~~~~~l~~Li~~~L~ea~~ss 475 (790)
+=-++..+.+--++|.. .++|..+.+.. .......+.+.++..+++|+..+-+-...-+
T Consensus 139 ~~E~~~a~~r~~~i~~s-----------~~aw~~~~~~~----------~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~ 197 (494)
T PF04437_consen 139 NAEKEFALERFDEIISS-----------PDAWQIDYDDV----------EADSDELKPTKSAERFVKLLESITDRYRPLP 197 (494)
T ss_dssp HHHHHHHHHHHH--------------------------H----------TTSSGGGG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccc-----------chhhhhhhccc----------cCCchhhcchHHHHHHHHHHHHHHHHHhhcC
Confidence 55555555555554442 24553321100 0112356688899999999999887653211
Q ss_pred hHHHH--HHH-HHHHHHHHHHHHhhhhhhHHh---------hcccc--ceeeeeecchHHHHHHHhhhhhhh--cc----
Q 003864 476 TRVAF--EFY-HAARDAILLYEAIVPVKLERQ---------LEGIN--QVAVLMHNDCLYLSQEILGFAFEY--HS---- 535 (790)
Q Consensus 476 ~~~a~--~L~-~~~~~il~LyralvP~~h~~~---------l~s~p--~~a~l~yNDC~YLA~~L~~l~~~~--~~---- 535 (790)
.. .. +.+ .+--.+++-|+.-....|... ..+.+ ...+..+|.+.|+.+.|...+.+. ..
T Consensus 198 ~~-~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~ 276 (494)
T PF04437_consen 198 SL-SHRLRFLIDIQLPLLDDYHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAK 276 (494)
T ss_dssp H----GG--GHHHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH-----
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhcc
Confidence 00 01 112 344445555555444333211 11111 234678999999999999988752 10
Q ss_pred ----CCC---cchhhH-----hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCcchh------hhhhh
Q 003864 536 ----DFP---SSIKEH-----AVFADMAPRFHLMAEEILQRQIQIVIFNLREALDG---ADGFQNTHQI------QQFES 594 (790)
Q Consensus 536 ----~lp---~~l~~~-----~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~---a~gf~~~~~~------~~~e~ 594 (790)
.-+ +...+. ..|-+.+..++++.+.+....++....++++.+.. ...|.....+ .-...
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~e 356 (494)
T PF04437_consen 277 ESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPE 356 (494)
T ss_dssp -------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GG
T ss_pred chhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHH
Confidence 001 111122 25777788888877666655555555555555522 2345443222 11112
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 003864 595 AKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLA 674 (790)
Q Consensus 595 ~e~av~q~l~~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~ 674 (790)
.-.++...-.+|..|. ..||+..|.+.--.+++.+..-+.+.|+...-.|+.-+.|+..=++.+ -.+|.+..
T Consensus 357 l~~~L~~L~~~L~~L~----~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L----~~~~~~~~ 428 (494)
T PF04437_consen 357 LVPALSLLRSRLSFLE----RSLPPADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRAL----FSVFSQYT 428 (494)
T ss_dssp GHHHHHHHHHHHHHHH----TS--HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHH----HTTS--TT
T ss_pred HHHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHH----HHHHHhhc
Confidence 2224444444444444 459999999999999999999999999999999999998886544333 44443311
Q ss_pred hhhcCCCCCCCCccchhccccchHhHHHHHHHhcCChh
Q 003864 675 AVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLR 712 (790)
Q Consensus 675 ~~~~~~~~~e~~~~~~~~~vpsW~Kf~~L~~iL~asL~ 712 (790)
...-..|.|+.+...+|+.+-.
T Consensus 429 ----------------~~p~~~f~~l~E~~~LL~L~~~ 450 (494)
T PF04437_consen 429 ----------------PRPEAFFKRLREACKLLNLPYG 450 (494)
T ss_dssp ----------------SGG-HHHHHHHHHHHHHGGGG-
T ss_pred ----------------cCHHHHHHHHHHHHHHcCCCCc
Confidence 1123678888888888885433
No 14
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=95.42 E-value=0.21 Score=48.43 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=74.3
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHH
Q 003864 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEI 100 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~ 100 (790)
|+|+. .++...+++..--.++...+.+.++.||.+|.+++.+-......+.+-+.++..++..+.. ....+...
T Consensus 32 d~ss~----g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~--ak~~L~~~ 105 (142)
T PF04048_consen 32 DDSSV----GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQE--AKSLLGCR 105 (142)
T ss_pred CCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC
Confidence 55554 5778889999999999999999999999999999999888888888888888887777666 35555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 101 IDEVSAKMKEARVKKELLELVRAIVEIGE 129 (790)
Q Consensus 101 v~~~~~~~~el~~~~~~l~~l~~l~~i~~ 129 (790)
-.++.++-.+-..-..++++|.+|..+.+
T Consensus 106 ~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~ 134 (142)
T PF04048_consen 106 REELKELWQRSQEYKEMIEILDQIEELRQ 134 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555553333333444445555544443
No 15
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=1.5 Score=53.20 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHH---HHHHHHHHH
Q 003864 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK---EIIDEVSAK 107 (790)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~---~~v~~~~~~ 107 (790)
-..+=+||+.=..-+..++..-|.++-.+|=+.+.+-.++..+..+-...++-|+..|.. ++.... ..+.+++..
T Consensus 241 ~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~--vd~~~~~~s~~Ile~~~~ 318 (951)
T KOG2115|consen 241 NSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKE--VDAENVRKSIKILELALT 318 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHH
Confidence 334445555566667777777788888888777665444444433333333322222211 111111 112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 003864 108 MKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQEL 187 (790)
Q Consensus 108 ~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~ 187 (790)
.++ ...+++.|+.+..+++....++..+..++|+.|++..+.++..|++.. ....-=++-|..+..++...|-..
T Consensus 319 r~n---~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~e--L~gl~sfrhL~~ql~el~~tI~~m 393 (951)
T KOG2115|consen 319 RKN---VEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSE--LLGLHSFRHLRSQLLELYKTIDKM 393 (951)
T ss_pred HHH---HHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--hcCchhHHhhHHHHHHHHHHHHHH
Confidence 122 245556778888999999999999999999999999999999988532 244556778999999999999999
Q ss_pred HHHHHhhhhccccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHHHHH
Q 003864 188 LVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVAD 243 (790)
Q Consensus 188 L~~~w~~lv~~~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~ 243 (790)
+...|.+..+-|-. ...+.-++...+ ...|..++.+|.+..-+...+.-..+
T Consensus 394 ~t~eF~~~~~~Dlg-~~~~~~ls~~le---e~~L~~~vlgllr~~klpsf~~~~~d 445 (951)
T KOG2115|consen 394 LTREFSTYSKSDLG-RKLTLQLSILLE---EDRLSSLVLGLLRTRKLPSFLEGYRD 445 (951)
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHH---HhHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 99999887764432 222211111111 24567777777766555444433333
No 16
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=95.02 E-value=1.3 Score=52.57 Aligned_cols=232 Identities=14% Similarity=0.222 Sum_probs=145.2
Q ss_pred ceeecccHHHHHHHHHHHHHhhhhc-chHHHHHHHHHHHHHHHHHHHhhhhhhHHhhc------------cccceeeeee
Q 003864 450 RCVVTKAASQLMKLVHQILQDICLS-STRVAFEFYHAARDAILLYEAIVPVKLERQLE------------GINQVAVLMH 516 (790)
Q Consensus 450 ~c~IS~~~~~l~~Li~~~L~ea~~s-s~~~a~~L~~~~~~il~LyralvP~~h~~~l~------------s~p~~a~l~y 516 (790)
-|-.|..|..++.++.+++.-|..+ ...+...........+..|+.-.-.+..+.+. .....-+-+-
T Consensus 243 g~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eyliA~~ 322 (566)
T PF06046_consen 243 GYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDRSSVKPKENPPGYLEYLIAVA 322 (566)
T ss_dssp S-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--S-HHHHHHHHH
T ss_pred CCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHh
Confidence 4779999999999999999988432 23333334444445555555555544444332 1112236678
Q ss_pred cchHHHHHHHhhhhhhhccCCCcchh-h-HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhhh
Q 003864 517 NDCLYLSQEILGFAFEYHSDFPSSIK-E-HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFES 594 (790)
Q Consensus 517 NDC~YLA~~L~~l~~~~~~~lp~~l~-~-~~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~a~gf~~~~~~~~~e~ 594 (790)
|||..++..+..+...+.....+... + ...+-.+...|-.++..+.+.-++.....+...+... |.. .=+..
T Consensus 323 N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~L--ft~----~W~~~ 396 (566)
T PF06046_consen 323 NNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKL--FTK----KWYSG 396 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTT--TSG----GGCTS
T ss_pred ccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--CcC----cCcCc
Confidence 99999999888887777655443222 1 1355666677777777777666665555566665443 321 11222
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHhhh
Q 003864 595 AKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLL------DDMAAEETLQLQRLIHLMLENLSS 668 (790)
Q Consensus 595 ~e~av~q~l~~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~Il~l------~DIs~~es~~L~~l~~~~~~~l~~ 668 (790)
.+++.++..++.-...-+..|.++.|...++.+.+.++.+-+..++.- ......-+.++..=. +.+.+
T Consensus 397 --~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~----~~l~~ 470 (566)
T PF06046_consen 397 --EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDA----EQLKS 470 (566)
T ss_dssp ---HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHH----HHHHH
T ss_pred --chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHH----HHHHH
Confidence 578888999998888888889999999999999999999999999982 344555555554333 44466
Q ss_pred hhhhhHhhhcCCCCCCCCccchhccccchHhHHHHHHHh
Q 003864 669 LLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELL 707 (790)
Q Consensus 669 LF~~~~~~~~~~~~~e~~~~~~~~~vpsW~Kf~~L~~iL 707 (790)
+|..... ...--..|..+..+..+|
T Consensus 471 ~F~~~~~--------------~~~~~~~~~~l~~l~~ll 495 (566)
T PF06046_consen 471 FFSKLGS--------------KSEVKSSFDVLEDLLELL 495 (566)
T ss_dssp HHHHHTH--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc--------------cccccchHHHHHHHHHHH
Confidence 6654321 011125666777888888
No 17
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=94.78 E-value=0.0098 Score=56.97 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA 106 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~ 106 (790)
.|....+.|......++.++.+.|++.|.||.++-..-.+....++.++..+..++..|++ ....+....+.++.
T Consensus 27 ~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~--~~~~l~~~~~~i~~ 101 (133)
T PF06148_consen 27 SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVES--VRDELDNTQEEIED 101 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHH--HHHS-STTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999998777666666677777777766666544 23333333344433
No 18
>PF15469 Sec5: Exocyst complex component Sec5
Probab=94.26 E-value=2.4 Score=42.69 Aligned_cols=142 Identities=13% Similarity=0.179 Sum_probs=89.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHh------HHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 48 KVQSYIASHHQDFASLFSLCNDTVSRTDEISTD------LSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELV 121 (790)
Q Consensus 48 ~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~------i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l 121 (790)
+....+..+|..|...-.+..+...+.+.-..+ ++.|...+++ +..........+-+.+.........+.++
T Consensus 3 ~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 3 DLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNE--ASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 445677788888887776655555555433322 2333332222 11112222222223355667778888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003864 122 RAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVR 197 (790)
Q Consensus 122 ~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~w~~lv~ 197 (790)
+..+-+-..=...++++..|+|..|+..-.+++..++.... ...+++-+-.++....+.+.. ..|+++..
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~---~~~vf~~v~~eve~ii~~~r~---~l~~~L~~ 150 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQ---QVPVFQKVWSEVEKIIEEFRE---KLWEKLLS 150 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH---HHHHHHhC
Confidence 99999999999999999999999999999999999877631 445665555566555555554 44555433
No 19
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=93.51 E-value=25 Score=43.54 Aligned_cols=130 Identities=11% Similarity=0.173 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~ 109 (790)
-+..+..||.--+.++-..+-+.+..--..-=.......-+...+..|+.+|..+++.|+. +..+-...+..+.+..+
T Consensus 35 ~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~--~e~~t~~s~~~L~~ld~ 112 (766)
T PF10191_consen 35 HLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA--VEQDTAQSMAQLAELDS 112 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccHHHHHHHHHHHHH
Confidence 3667777777777777777766665433322222233444555566666666666666544 33334445555554422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 110 EARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 110 el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
=-..-+.....|++.....+...+++..+..|++..++..|.++++.|...+
T Consensus 113 vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~ 164 (766)
T PF10191_consen 113 VKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQ 164 (766)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 2233455566778888888889999999999999999999999999997774
No 20
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=33 Score=41.15 Aligned_cols=199 Identities=16% Similarity=0.224 Sum_probs=116.0
Q ss_pred hHHHHHHHhhhhhhhccCCCcchh------hHhhHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCCCC--cc-h
Q 003864 519 CLYLSQEILGFAFEYHSDFPSSIK------EHAVFADMAPRFHLMAEEILQRQIQ-IVIFNLREALDGADGFQN--TH-Q 588 (790)
Q Consensus 519 C~YLA~~L~~l~~~~~~~lp~~l~------~~~~fvd~~~~fr~~ae~~~q~qi~-~~~~~L~e~L~~a~gf~~--~~-~ 588 (790)
|.|+-.-..++..++..-||++.. .+..+..++..|+.+....++..-. ...-.++-.++...|.+. +. +
T Consensus 555 ~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~f~~is~~ls~ed 634 (773)
T KOG0412|consen 555 KEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDTFVNISYNLSEED 634 (773)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhhhhhhhccccHHH
Confidence 445544444444444444555432 2445666777777766433322211 111224444444333332 12 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 003864 589 IQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSS 668 (790)
Q Consensus 589 ~~~~e~~e~av~q~l~~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~ 668 (790)
-..++..+.=|.+-++++.++-...++.|.+..|....+-+++.+...+=..|...+ ...-=+.+|-+=++.+ -.
T Consensus 635 y~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~-FNrlG~lqLDre~r~l----is 709 (773)
T KOG0412|consen 635 YAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ-FNRLGGLQLDRELRAL----IS 709 (773)
T ss_pred HhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH-HHhhcchHhhHHHHHH----HH
Confidence 233466778899999999999999999999999999988888888776654444322 1111111221111111 11
Q ss_pred hhhhhHhhhcCCCCCCCCccchhccccchHhHHHHHHHhcC-ChhhHHHHhhcCC-cccCCCCHHHHHHHH
Q 003864 669 LLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWESGE-LLSCGFTLSEVQCNL 737 (790)
Q Consensus 669 LF~~~~~~~~~~~~~e~~~~~~~~~vpsW~Kf~~L~~iL~a-sL~dI~~~W~~G~-ll~~~Fs~~Ev~~LI 737 (790)
.|. | .+ -...=.+..|++++.-+|+- .-.+|.+-|.... |+...+|++||+...
T Consensus 710 ~lt--------~----~t---~~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~vl 765 (773)
T KOG0412|consen 710 YLT--------G----VT---QWNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKVL 765 (773)
T ss_pred Hhh--------c----cc---chhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHHHH
Confidence 111 0 00 00112466788888889987 8889999999886 878899999999764
No 21
>PF11988 Dsl1_N: Retrograde transport protein Dsl1 N terminal; InterPro: IPR021875 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. It is comprised primarily of alpha helical bundles []. It complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. A central disorganised region between the N and C termini of Dsl1 contains binding sites for coatomer []. The C terminus of Dsl1 contains a binding site to the Sec39 subunit of the Dsl1p complex []. ; PDB: 3K8P_C 3ETV_A 3ETU_A.
Probab=91.74 E-value=12 Score=41.27 Aligned_cols=221 Identities=14% Similarity=0.177 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCC-CChhhHHHHHHHHHHHHHHHHHH
Q 003864 108 MKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDEN-ASEPLVYGLLRKEWLVCFEEIQE 186 (790)
Q Consensus 108 ~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~-~~~~~I~~~L~~~~~~l~~~i~~ 186 (790)
++|.+.++++. .+.+++.+...+.+++.-++--++..+--.|+.+++.++..+.. ...-+-=+.+..-+..|+..+..
T Consensus 38 ~~e~~Ls~eL~-~l~~LK~is~Li~EfktN~ellElENCyYSLqnLrKKlk~n~~~lkqs~~FQqSvatYVDsLHl~Lv~ 116 (354)
T PF11988_consen 38 QRESQLSKELH-DLNSLKTISSLIKEFKTNFELLELENCYYSLQNLRKKLKNNDSFLKQSFRFQQSVATYVDSLHLKLVS 116 (354)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-CCHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccHHhhcchhhhhhHHHHHHHHHHHHHH
Confidence 44555556555 77889999999999999999999999999999999999887643 13333334455555555555555
Q ss_pred HHHHHHhhhhccccCCCeEEEEEEeec--CCCCcccHHHHHHHHHH-------------------hhhhhHHHHHHHHHH
Q 003864 187 LLVKFVESAVRFEKESNRVLVKYQLTV--DGLDGIELRTVLEAMEV-------------------VGILDYGLAKVADLK 245 (790)
Q Consensus 187 ~L~~~w~~lv~~~~~~~~i~v~~~i~~--~~~~~~~L~~vl~AL~~-------------------lg~l~~~l~~l~~~L 245 (790)
.+.+.-..- -|.-++++++.+-.+.- ++. .....+.+.-+.. +|.+...+.. .
T Consensus 117 kl~~ilt~~-FW~I~~~si~F~~~I~~g~D~v-~~~Yd~f~~f~~~~~fp~~~lD~~~WfI~dm~l~d~qe~Vr~----k 190 (354)
T PF11988_consen 117 KLYEILTNK-FWNITSNSISFNPKIEWGKDDV-DFEYDTFMDFVKSQFFPQNVLDPESWFISDMSLGDLQEKVRN----K 190 (354)
T ss_dssp HHHHHHHCT-TEEE-SSEEEE-SEEEETTTTE-EEEHHHHHHHHHHHH-CCCS--TTSHHHHT-SSHHHHHHHHH----H
T ss_pred HHHHHHhcc-ceeecCCeEEeccceeecCcce-eeecHHHHHHHHHccCCCCCCCcccceeeecccchHHHHHHH----H
Confidence 555544331 12334444443333322 321 1233333333332 3444444433 3
Q ss_pred HHHhhhhhhcCCCCccccc-ccCCCCcccc----cceEEeeccCCccccCCChhHHHHHHHHHHHHHHHHcccCC-CchH
Q 003864 246 IKYVISPAVSYGSPITFVE-ELNPGPEKMS----EAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN-GSWV 319 (790)
Q Consensus 246 ~~~il~Pli~~~~~~~~v~-~~~~~~~~~~----~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~L~~~n-~~l~ 319 (790)
++.|+.-.|.-......+. .+-.++..++ ...|.+..... .++..+.+...+...+..|+...+...+ ..++
T Consensus 191 L~~I~~~Yi~l~~v~~~iK~~iF~~~~~~~~~~~~~kL~~~~s~~--~g~~~~~~~i~Sf~~l~~Fl~~~ls~~d~~~l~ 268 (354)
T PF11988_consen 191 LNTILKDYIKLNSVIEMIKEFIFSDSKEFSYSDNNNKLSFKQSSS--NGQDKLQETIESFQNLVDFLLETLSPRDKNILL 268 (354)
T ss_dssp HHHHHHHHTS-HHHHHHHHCCTT-TTEEEEEETTTTEEEEEE----------HHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceEEEcCCCCeEEEEeccc--CCcchHHHHHHHHHHHHHHHHhccCHhHHHHHH
Confidence 3333333322221100000 0000110000 13466555311 1334577889999999999999987543 3688
Q ss_pred HHhhhhhhHHHHHHHHHh
Q 003864 320 RCFGRLTWPRISELIISN 337 (790)
Q Consensus 320 ~~lg~~i~~~ls~~lI~~ 337 (790)
..+|..+..++...+=.+
T Consensus 269 ~~LG~~i~tE~~K~vK~N 286 (354)
T PF11988_consen 269 EKLGPLISTELTKFVKQN 286 (354)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHhC
Confidence 889998888877644433
No 22
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.42 E-value=4.8 Score=50.03 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=74.5
Q ss_pred hhhhhhhcCCCC------------CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHH
Q 003864 9 NVRDLLSTHDLT------------DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDE 76 (790)
Q Consensus 9 ~~~~~~~~~~~~------------~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~ 76 (790)
-|||.|-..+++ +-..|++.+.+..+-+.+..++..+ ++.-..+++....+++++.
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL------------~nVd~IL~~T~~di~ra~~ 1546 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASL------------PNVDAILSRTKGDIARAEN 1546 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc------------ccHHHHHHhhhhhHHHHHH
Confidence 477888777763 2234555544444433333333322 2333344444455555555
Q ss_pred HHHhHHHHHhhhccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Q 003864 77 ISTDLSDILGLISYR-PIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA--LRDGRLRFAAEELREL 153 (790)
Q Consensus 77 l~~~i~~l~~~i~~~-~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~--l~~~~l~~A~~~L~~l 153 (790)
|+.+-..+++.-++- ..-..++.+++++... +-+-..++-+.-+.++...+.|.++++. -.++-.-.|.+.+.++
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A--q~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL 1624 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEADVA--QGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL 1624 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554442220 0112334444444333 4444556666677777777788877654 4556677788888877
Q ss_pred HHHhhcCC
Q 003864 154 KKDLRVGD 161 (790)
Q Consensus 154 ~~~l~~~~ 161 (790)
+..++.++
T Consensus 1625 ~~~~e~lk 1632 (1758)
T KOG0994|consen 1625 ETRMEELK 1632 (1758)
T ss_pred HHHHHHHH
Confidence 77776654
No 23
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=19 Score=42.18 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~ 108 (790)
|.+++.-.+|..++.++-.+.+....++|..|....+-..+..--....+.+...+-.. .-++.....+++...
T Consensus 34 e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~------~~~L~s~~~~f~~~~ 107 (581)
T KOG2069|consen 34 EELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQ------LPELTSPCKRFQDFA 107 (581)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh------hHHhhhHHHHHHHHH
Confidence 57888889999999999999999999999988874443333333333333333333222 224455555555554
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003864 109 KEA----RVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEI 184 (790)
Q Consensus 109 ~el----~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i 184 (790)
.++ ..+..++....++.++.+...--+.....|+|.+|.+.-.-+...=+..+ ...++..+..++......+
T Consensus 108 ~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~----~~pvi~~i~~~v~~tv~~l 183 (581)
T KOG2069|consen 108 EEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFG----TIPVIQEIATEVEQTVQKL 183 (581)
T ss_pred HHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHH
Confidence 444 45666777777777777776667788999999999876443333222222 2255555677777766666
Q ss_pred HHHHHHHHhh
Q 003864 185 QELLVKFVES 194 (790)
Q Consensus 185 ~~~L~~~w~~ 194 (790)
.++|......
T Consensus 184 l~qL~~~l~~ 193 (581)
T KOG2069|consen 184 LEQLIQQLRT 193 (581)
T ss_pred HHHHHHHHhh
Confidence 6666665544
No 24
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=87.75 E-value=2.4 Score=37.09 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhh
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i 88 (790)
-+++...-.+|..++.+..++....+-.+|.+|....+....+...+.++...+..+...+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998877777777776766666555543
No 25
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.69 E-value=54 Score=37.19 Aligned_cols=113 Identities=9% Similarity=0.068 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHH-hhhccCccchhHH-HHHHHH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL-GLISYRPIDKEVK-EIIDEV 104 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~-~~i~~~~~~~~l~-~~v~~~ 104 (790)
++|.+..++.||.++++|++.++... .....+...---.-.++..++..|+..|+.++ +.+-+........ ..-...
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~-~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~ 166 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKR-KADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALS 166 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHH-hhcccccccccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHH
Confidence 56789999999999999999999754 22222221111122345677888888888762 1110000000000 000011
Q ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003864 105 SAKMKEARVK-------------------------KELLELVRAIVEIGERLKGVKEALRD 140 (790)
Q Consensus 105 ~~~~~el~~~-------------------------~~~l~~l~~l~~i~~~L~~~~~~l~~ 140 (790)
.+...+++.- +.-...+..+..+..+|...+.+++-
T Consensus 167 ~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 167 KKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 1111222211 12345678899999999999999887
No 26
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=79.33 E-value=47 Score=33.77 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhhHHHhHHHHHHhHHHHHhhhcc
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQD-FASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~-f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~ 90 (790)
.+.+.|..+...-..+||+..+.++.+|.+ ..|.++....+.....+--..++.-.+.|+.
T Consensus 28 ~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~ 89 (204)
T PF04740_consen 28 SLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDS 89 (204)
T ss_pred HHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcc
Confidence 344555555555556999999999999999 8899888777766665555666666666654
No 27
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.44 E-value=36 Score=38.59 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQ----DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~----~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~ 105 (790)
.|.+.|+.|+.++++.+.++.-++++-.- .|...-+.++....+.......+..+.+.|.+|.....+-.+.+.=.
T Consensus 244 ~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs 323 (439)
T KOG2911|consen 244 KLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGS 323 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhH
Confidence 46677777777777777777766665444 24455566666777777777778888888877666666665555444
Q ss_pred HH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 003864 106 AK-MKEAR---VKKELLELVRAIVEIGERLKGVKEALRDGRL 143 (790)
Q Consensus 106 ~~-~~el~---~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l 143 (790)
+. |.-+. ....+.++|.++++-+.+-++++.++..+.+
T Consensus 324 ~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~ 365 (439)
T KOG2911|consen 324 EALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNV 365 (439)
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 32 21222 2333566666666666666666666655554
No 28
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.30 E-value=31 Score=41.19 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=60.8
Q ss_pred cchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCC-CCChhh
Q 003864 93 IDKEVKEIIDEVSAKMKEAR---VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDE-NASEPL 168 (790)
Q Consensus 93 ~~~~l~~~v~~~~~~~~el~---~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~-~~~~~~ 168 (790)
+...++.+++++.+--+++. |.=..+..-+.+..+.+.+.+....+.++++..|-..++++...++.+-. -.++..
T Consensus 220 l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~ 299 (560)
T PF06160_consen 220 LQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVE 299 (560)
T ss_pred HHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666665434433 22334567788999999999999999999999999999999998877631 123444
Q ss_pred HHHHHHHHHHHHHHHH
Q 003864 169 VYGLLRKEWLVCFEEI 184 (790)
Q Consensus 169 I~~~L~~~~~~l~~~i 184 (790)
+.+-+...+..+.+.+
T Consensus 300 Ak~~V~~~~~~l~~~l 315 (560)
T PF06160_consen 300 AKKYVEKNLKELYEYL 315 (560)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 4444444444444333
No 29
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=73.60 E-value=71 Score=30.89 Aligned_cols=100 Identities=16% Similarity=0.291 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~ 107 (790)
.++++..-.+++..+.++-.+=+.-.++.-..|.....+-.+...++.++...+...++.+... ..+|+..-.+.
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~--~~eL~~L~~~s--- 116 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCR--REELKELWQRS--- 116 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHH---
Confidence 4478888888888888888888888888888888888888888889999999999999888663 44444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 108 MKEARVKKELLELVRAIVEIGERLKG 133 (790)
Q Consensus 108 ~~el~~~~~~l~~l~~l~~i~~~L~~ 133 (790)
.+.+.-=.++..++.++.+=+.+++
T Consensus 117 -~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 -QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 4455555666677777777766653
No 30
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.70 E-value=1.2e+02 Score=34.09 Aligned_cols=148 Identities=14% Similarity=0.268 Sum_probs=77.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHH
Q 003864 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (790)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~ 104 (790)
...+.+++.-.+|+.-+. | | .++..-.||-..+.++........+...+.+.-..+ +..++...++..
T Consensus 190 ~vd~~eWklEvERV~PqL---K--v--~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~k-----l~~~i~~~lekI 257 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQL---K--V--TIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDK-----LQQDISKTLEKI 257 (359)
T ss_pred cCCHHHHHHHHHHHhhhh---e--e--eccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHHH
Confidence 344556666666666665 1 1 122222444455544444443333333333322222 233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHhhcCCC-CCChhhHHHHHH
Q 003864 105 SAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR---------LRFAAEELRELKKDLRVGDE-NASEPLVYGLLR 174 (790)
Q Consensus 105 ~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~---------l~~A~~~L~~l~~~l~~~~~-~~~~~~I~~~L~ 174 (790)
+. ||---|+++-..+++.+.....|.++++...+.. +..-.+.|++++..++.-+. -...+.+++ ++
T Consensus 258 ~s--REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~-IK 334 (359)
T PF10498_consen 258 ES--REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVK-IK 334 (359)
T ss_pred HH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HH
Confidence 44 3555566677777777777777777665533322 33444556667777744332 234556666 78
Q ss_pred HHHHHHHHHHHHH
Q 003864 175 KEWLVCFEEIQEL 187 (790)
Q Consensus 175 ~~~~~l~~~i~~~ 187 (790)
.-+..|+++|.+.
T Consensus 335 qAl~kLk~EI~qM 347 (359)
T PF10498_consen 335 QALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887643
No 31
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=70.44 E-value=2.7e+02 Score=34.27 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~ 108 (790)
+|.....++|.++...+++.--..|...-.....+++.-.+....++++...+..-... -..+++.|+..+++.
T Consensus 1 ~dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~------L~~~~~di~~IE~qn 74 (701)
T PF09763_consen 1 DDADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVE------LNSVRDDIEYIESQN 74 (701)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhc
Confidence 36677888999999988887665665544444444444444444444444444422211 224556666666653
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHhhcCCC-------CCChhhHHH
Q 003864 109 KEAR----VKKELLELVRAIVEIGERLKGVKEALRDGR------LRFAAEELRELKKDLRVGDE-------NASEPLVYG 171 (790)
Q Consensus 109 ~el~----~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~------l~~A~~~L~~l~~~l~~~~~-------~~~~~~I~~ 171 (790)
+-++ -++.+...|+.|..-...=.+.-.++.++. +......+..|.+++..+.. ....-.+++
T Consensus 75 ~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~ 154 (701)
T PF09763_consen 75 NGLQVQSANQKLLLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVK 154 (701)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 3332 223333333333222111112223333333 34444455556666655321 122333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 003864 172 LLRKEWLVCFEEIQELLVKFVESAV 196 (790)
Q Consensus 172 ~L~~~~~~l~~~i~~~L~~~w~~lv 196 (790)
-=+.++..++..+...+.......+
T Consensus 155 er~~~~~~~~~~F~~r~~~~l~~~F 179 (701)
T PF09763_consen 155 ERREEYEKVSDKFCKRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544444433
No 32
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.72 E-value=1.2e+02 Score=35.00 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=59.1
Q ss_pred HHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 003864 70 TVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEE 149 (790)
Q Consensus 70 l~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~ 149 (790)
+.+.+..|+.++..+.-.+.. +..+..+-+..++....--+..++..+.|+.-..+-+.+.+++.....|++..|++.
T Consensus 79 Lq~Da~~Lq~kma~il~el~~--aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadk 156 (828)
T KOG4182|consen 79 LQADAHRLQEKMAAILLELAA--AEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADK 156 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHH
Confidence 444455566666544333322 233334444444443222234455666777888889999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 003864 150 LRELKKDLRVGD 161 (790)
Q Consensus 150 L~~l~~~l~~~~ 161 (790)
|..+++.|...+
T Consensus 157 LaalqkcL~A~~ 168 (828)
T KOG4182|consen 157 LAALQKCLHAQE 168 (828)
T ss_pred HHHHHHHHHHHH
Confidence 999999986654
No 33
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.30 E-value=1.7e+02 Score=34.90 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 113 VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 113 ~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
|-.+.-.+=+.+..+...+.++++...+|++..|-+.|.+++..+..+.
T Consensus 159 ~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~ 207 (560)
T PF06160_consen 159 YGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELE 207 (560)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455556667788999999999999999999999999998888877664
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=67.06 E-value=2.7e+02 Score=32.95 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=13.3
Q ss_pred hhhhhhHHHhHHHHHHhHHHHHhhh
Q 003864 64 FSLCNDTVSRTDEISTDLSDILGLI 88 (790)
Q Consensus 64 ~~~~~dl~~~~~~l~~~i~~l~~~i 88 (790)
...+..+..+.+.+.++|.++.+.+
T Consensus 226 ~~~~~~l~~~l~~l~~~i~~l~~~i 250 (562)
T PHA02562 226 VEEAKTIKAEIEELTDELLNLVMDI 250 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334455555566666665555443
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=64.87 E-value=2.3e+02 Score=35.64 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC
Q 003864 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (790)
Q Consensus 121 l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~ 160 (790)
-+.+.++.+++++.+..++..++......++.+...+..+
T Consensus 626 ~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l 665 (880)
T PRK02224 626 RERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQV 665 (880)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777666666666666666666666665555
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.83 E-value=2.1e+02 Score=30.33 Aligned_cols=41 Identities=15% Similarity=0.014 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCeEEEEEEee
Q 003864 172 LLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLT 212 (790)
Q Consensus 172 ~L~~~~~~l~~~i~~~L~~~w~~lv~~~~~~~~i~v~~~i~ 212 (790)
.+..+-.+|++.+-..|-..|.++..+..+-+.+.+.-+++
T Consensus 160 ~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C 200 (239)
T COG1579 160 ELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVC 200 (239)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcc
Confidence 35667778888888889999999887665555655555543
No 37
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=62.21 E-value=1.8e+02 Score=29.37 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHH
Q 003864 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKE 110 (790)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~e 110 (790)
+..+...|-..-...|++...++..-|+......+...+=.++....-..|..+- +. +....+...+.++.. +
T Consensus 46 ~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i---d~-~~~~~~~~~i~~L~~---~ 118 (184)
T PF05791_consen 46 LSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI---DQ-KDKEDLKEIIEDLQD---Q 118 (184)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-T-HHHHHHHHHHHHH---H
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Cc-ccHHHHHHHHHHHHH---H
Confidence 5666778888888999999999999999887777776666677766666665433 22 445555555555544 5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 003864 111 ARVK-KELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQEL 187 (790)
Q Consensus 111 l~~~-~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~ 187 (790)
+..+ ..+-.+++.|..+...+.+-...+...- .++...+...++ .+..|+.+..++++.|...
T Consensus 119 i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~--------~~l~~~l~~~~g------~I~~L~~~I~~~~~~I~~~ 182 (184)
T PF05791_consen 119 IQKNQDKVQALINELNDFKDKLQKDSRNLKTDV--------DELQSILAGENG------DIPQLQKQIENLNEEIKKD 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHTT--------HHHHHHHHHHHTGGG-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHhcccC------CHHHHHHHHHHHHHHHHhh
Confidence 5443 3444567777777777777666554432 234555544432 2344777777776665543
No 38
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.09 E-value=4.2e+02 Score=33.13 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=107.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHH
Q 003864 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (790)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~ 104 (790)
-.+.+||+.-|..|++...-=|.-=..+.+.++..|..-.+...+++.+.++..++.+ .| ....+...++++
T Consensus 183 ~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~-------gs-~t~~l~n~i~~~ 254 (934)
T KOG2347|consen 183 DTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPH-------GS-GTTKLENCIKNS 254 (934)
T ss_pred hccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCcc-------ch-HHHHHHHHHHHh
Confidence 3678899999999998887777667779999999998888877777777776444433 11 111123333332
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 003864 105 SA-----------KMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLL 173 (790)
Q Consensus 105 ~~-----------~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L 173 (790)
.. .+-..+..+.++.+++..+-+-..-..++.....|+|..++..=++++...-.. +-.+++-+
T Consensus 255 ~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~t-----~v~~Fkk~ 329 (934)
T KOG2347|consen 255 TSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGKT-----EVNLFKKV 329 (934)
T ss_pred hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhccc-----ccHHHHHH
Confidence 21 134455678899999999999999999999999999999999988888775443 34466656
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003864 174 RKEWLVCFEEIQELLVK 190 (790)
Q Consensus 174 ~~~~~~l~~~i~~~L~~ 190 (790)
-+|+..-...+.+.|.+
T Consensus 330 l~Eve~~m~~~k~~l~~ 346 (934)
T KOG2347|consen 330 LEEVEKRMQSFKETLYR 346 (934)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666655555555544
No 39
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=60.50 E-value=1.8e+02 Score=34.52 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=84.2
Q ss_pred cchhhhhhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHH
Q 003864 6 DTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL 85 (790)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~ 85 (790)
+.--|++-+.+||-.+|... ++...+.+.++.+.| +|...-+...+++.|.+....=+.++.
T Consensus 34 ~~e~v~~~lktg~~lr~y~~----~ve~~l~k~e~~Siq--------------dyi~es~~~~~lhNqi~~cd~Vl~rme 95 (683)
T KOG1961|consen 34 DDELVKEALKTGDDLREYSK----QVENELRKAERKSIQ--------------DYIKESENLASLHNQIRACDSVLERME 95 (683)
T ss_pred chHHHHHHHhcCCcchHHHH----HHHHHHHHHHhhhhH--------------HHHHhhhhhhhHhhhHHHHHHHHHHHH
Confidence 33447777777777676665 777777777666655 333333334445555554444444433
Q ss_pred hhhccCccchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHhcCcHHHHHHHHHHH
Q 003864 86 GLISYRPIDKEVKEIIDEVSAK-------MKEARVKKELLELVRAIV----EIGERLKGVKE-ALRDGRLRFAAEELREL 153 (790)
Q Consensus 86 ~~i~~~~~~~~l~~~v~~~~~~-------~~el~~~~~~l~~l~~l~----~i~~~L~~~~~-~l~~~~l~~A~~~L~~l 153 (790)
+-+.. .+..+....+|.... ..+|+.++++...|.+.. .=-+.++.+-. -+.+..+.+|++. +
T Consensus 96 ~~L~~--FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~~~Lee---L 170 (683)
T KOG1961|consen 96 TMLSS--FQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFLEALEE---L 170 (683)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHHHHHHH---H
Confidence 33333 444555555554433 233444455444443332 11122222222 2445566666554 4
Q ss_pred HHHhhcCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 154 KKDLRVGD--ENASEPLVYGLLRKEWLVCFEEIQELLVKFV 192 (790)
Q Consensus 154 ~~~l~~~~--~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~w 192 (790)
.+.++.+. ...++....+.+...+..||....+...++-
T Consensus 171 ~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~I 211 (683)
T KOG1961|consen 171 SHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFI 211 (683)
T ss_pred HHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55554432 2245666677777777777776666555543
No 40
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.25 E-value=66 Score=30.65 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHhHHHHHHhHHHHHh
Q 003864 70 TVSRTDEISTDLSDILG 86 (790)
Q Consensus 70 l~~~~~~l~~~i~~l~~ 86 (790)
+..|.+.+..++|...+
T Consensus 66 LsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 33455555555554443
No 41
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=58.41 E-value=93 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASH 56 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~ 56 (790)
.|.+.+.+|+.++.+++.++..++++.
T Consensus 12 ~L~~~~~~le~~i~~~~~~~k~~~~~~ 38 (171)
T PF03357_consen 12 RLEKQIKRLEKKIKKLEKKAKKAIKKG 38 (171)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455555555555555555555555433
No 42
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.51 E-value=28 Score=40.08 Aligned_cols=147 Identities=13% Similarity=0.046 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHH----HHHHHHHH
Q 003864 37 RLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV----SAKMKEAR 112 (790)
Q Consensus 37 ~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~----~~~~~el~ 112 (790)
.|-.+|..+-++++..+..+|..|.+.-++....-+...++...|+.+...+. .+......+ .+++.-+.
T Consensus 57 dMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms------~i~~~s~~l~g~L~ekre~I~ 130 (636)
T KOG2346|consen 57 DMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMS------SIQSKSDGLAGSLFEKRELIK 130 (636)
T ss_pred HHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHH------HHhhhhccccchhHHhHHHHH
Confidence 35566777778999999999999998866665555666666666665554322 112222222 22233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 113 VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFV 192 (790)
Q Consensus 113 ~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~w 192 (790)
..-+...++++++-+...=...+...+.+.|-+|...-..+...+++-+.. + -+......-.+.+..+.++|....
T Consensus 131 kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~~---p-sfq~~~~~seei~~rl~~qL~~rl 206 (636)
T KOG2346|consen 131 KLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDGR---P-SFQEDDVPSEEIRLRLVAQLGTKL 206 (636)
T ss_pred HhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCCC---C-cHHHhccchHHHHHHHHHHHHHHh
Confidence 555566677778877777777888899999999999988888888766521 1 122233444555666677776655
Q ss_pred h
Q 003864 193 E 193 (790)
Q Consensus 193 ~ 193 (790)
.
T Consensus 207 r 207 (636)
T KOG2346|consen 207 R 207 (636)
T ss_pred c
Confidence 4
No 43
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=55.99 E-value=81 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhHHHhHHHHHHhHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL---FSLCNDTVSRTDEISTDLSD 83 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~---~~~~~dl~~~~~~l~~~i~~ 83 (790)
-++|.+.|.+|.++..+.|+++|+....=..+|..+ .+.+-+.....++....+..
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~ 62 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKA 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999888644455544 45555555555555555543
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=55.72 E-value=3.2e+02 Score=33.31 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=30.2
Q ss_pred hhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHH
Q 003864 66 LCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEAR 112 (790)
Q Consensus 66 ~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~ 112 (790)
....+..+..++..+++.+...+...|....+....++..+..+++.
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 35556677778888888888888776555555555555555444443
No 45
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=54.75 E-value=3.3e+02 Score=33.02 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=52.7
Q ss_pred hhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 58 QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA 137 (790)
Q Consensus 58 ~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~ 137 (790)
.+|.+..+.-..+.+.++++.+.-+.+...++. ........+++++++++|.+..+.-..++.....=.+.=.+-..+
T Consensus 38 ~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~--~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~ 115 (618)
T PF06419_consen 38 KEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSA--AKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDA 115 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 345555555555555555555555555555544 244555566666665444433333333333333222222222344
Q ss_pred HhcC------cHHHHHHHHHHHHHHhhcC
Q 003864 138 LRDG------RLRFAAEELRELKKDLRVG 160 (790)
Q Consensus 138 l~~~------~l~~A~~~L~~l~~~l~~~ 160 (790)
+..| +|=.|+..+++++..-+.+
T Consensus 116 L~~~~~~v~~~FF~~L~r~~~I~~~c~~L 144 (618)
T PF06419_consen 116 LTSGEEPVDDEFFDALDRVQKIHEDCKIL 144 (618)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666 4778888888877776655
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.64 E-value=1e+02 Score=36.84 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=50.3
Q ss_pred cchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 93 IDKEVKEIIDEVSAKMKEARV---KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 93 ~~~~l~~~v~~~~~~~~el~~---~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
....++.+++++..--+++.. .=..+..-+.|..+...+.+....+..+++..|-..++.+...++.+-
T Consensus 224 ~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Ly 295 (569)
T PRK04778 224 LQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLY 295 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 344566666666655444432 223344667888999999999999999999999999999988888764
No 47
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=54.52 E-value=1.1e+02 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=24.2
Q ss_pred ChhhHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhh
Q 003864 27 TAPDLRLLISRLEFH---SLQIKSKVQSYIASHHQDFASLF 64 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~---~~e~k~~v~~~i~~~y~~f~~~~ 64 (790)
++-|+|.-++.|... |++--+.+--++.+-+.+|...+
T Consensus 221 DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 221 DAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKAL 261 (384)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 456899988877654 45555555666666666665443
No 48
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=53.96 E-value=3.2e+02 Score=29.66 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHhhcCCCC-CChhhHHHHHHHHHH
Q 003864 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGR---------LRFAAEELRELKKDLRVGDEN-ASEPLVYGLLRKEWL 178 (790)
Q Consensus 109 ~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~---------l~~A~~~L~~l~~~l~~~~~~-~~~~~I~~~L~~~~~ 178 (790)
||---|.++..++++-+++...|.+++++-..++ +.+.+..++.+++.++.-+.. .....+.+ ++.-+.
T Consensus 267 REK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvk-Ikqavs 345 (384)
T KOG0972|consen 267 REKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVK-IKQAVS 345 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHH-HHHHHH
Confidence 4555677888888888888888888887755544 556666777777777554322 23444555 566666
Q ss_pred HHHHHH
Q 003864 179 VCFEEI 184 (790)
Q Consensus 179 ~l~~~i 184 (790)
.|+...
T Consensus 346 KLk~et 351 (384)
T KOG0972|consen 346 KLKEET 351 (384)
T ss_pred HHHHHH
Confidence 666544
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=53.70 E-value=3.9e+02 Score=34.43 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKS 47 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~ 47 (790)
++.|...-.|-.++.+.+|.
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~ 1563 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKG 1563 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444443
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.41 E-value=4.1e+02 Score=33.35 Aligned_cols=85 Identities=13% Similarity=0.264 Sum_probs=46.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 003864 50 QSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM----KEARVKKELLELVRAIV 125 (790)
Q Consensus 50 ~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~----~el~~~~~~l~~l~~l~ 125 (790)
+.-+..+.++...+.+..+.+..+++.....|.+++..|.-+ .+. -.-|+.++.++ .-++....-++-|+.+.
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGA--E~MV~qLtdknlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGA--EEMVEQLTDKNLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcH--HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555666667777777777777765442 222 12334444332 22344455556677777
Q ss_pred HHHHHHHHHHHH
Q 003864 126 EIGERLKGVKEA 137 (790)
Q Consensus 126 ~i~~~L~~~~~~ 137 (790)
+++..|-+.+..
T Consensus 479 e~~EQL~Esn~e 490 (1243)
T KOG0971|consen 479 EMNEQLQESNRE 490 (1243)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.21 E-value=1.9e+02 Score=32.01 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003864 32 RLLISRLEFHSLQIKSKV 49 (790)
Q Consensus 32 ~~~i~~l~~~~~e~k~~v 49 (790)
...++.|..+.+.++.+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~ 165 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDY 165 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 52
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=51.62 E-value=94 Score=28.93 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=58.9
Q ss_pred HhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003864 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELR 151 (790)
Q Consensus 72 ~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~ 151 (790)
..++.+.++++.+...|++. .=..=...++++.+.=+.....+++.--=+.+..+...+.....++..++-..|+..|.
T Consensus 23 ~~~~~i~~~l~~i~~~i~~~-dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~ 101 (121)
T PF14276_consen 23 NSTDSIEEQLEQIEEAIENE-DWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAELA 101 (121)
T ss_pred hHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34555666666666555441 11222233333333323344445555556778889999999999999999999999999
Q ss_pred HHHHHhhcCC
Q 003864 152 ELKKDLRVGD 161 (790)
Q Consensus 152 ~l~~~l~~~~ 161 (790)
.++..++.++
T Consensus 102 ~lk~~i~~i~ 111 (121)
T PF14276_consen 102 ELKELIEHIP 111 (121)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 53
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.99 E-value=3.3e+02 Score=33.74 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003864 109 KEARVKKELLELVRAIVEIGERLKGVKEALRD 140 (790)
Q Consensus 109 ~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~ 140 (790)
.|-++.+++-..=.+++.+..++++++.-++.
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555544433
No 54
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=50.39 E-value=2.9e+02 Score=32.57 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 96 EVKEIIDEVSAKMKEARV-----KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 96 ~l~~~v~~~~~~~~el~~-----~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
.++...+.++++++++-. -+.+-.+=+++..+...+.++...-..|+++.|.+.|..++.-+..+.
T Consensus 140 ~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~ 210 (570)
T COG4477 140 EIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALR 210 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 344444455555555543 344555556788899999999999999999999999997777665554
No 55
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.62 E-value=5.6e+02 Score=31.17 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=73.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-------hhHHHhHHHHHHhHHHHHhhhccCccchhHHH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLC-------NDTVSRTDEISTDLSDILGLISYRPIDKEVKE 99 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~-------~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~ 99 (790)
+---+..-+++|...+.+++.+.+..+.+++.+.....-.. ..+..++.+|+..++++++.+.+ |.. .++
T Consensus 69 ~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~e-pyk-~i~- 145 (797)
T KOG2211|consen 69 ESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKE-PYK-IIW- 145 (797)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHH-HHH-
Confidence 33457888999999999999999999999998655443221 22555666666666666665433 111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 100 IIDEVSAKMKEARVKKELLELVRA---IVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 100 ~v~~~~~~~~el~~~~~~l~~l~~---l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
.+..++...+....+|+. +.++...|...+.. ...+...|++.+-++...++...
T Consensus 146 ------~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~-~~~d~traaq~lneLd~l~e~~d 203 (797)
T KOG2211|consen 146 ------LKTMVLTRLHVAENLLRRSGRALELSKKLASLNSS-MVVDATRAAQTLNELDSLLEVLD 203 (797)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCHhHHHHHHHHHHHHHHHHHhh
Confidence 112222222222223322 33444444443332 22347888888888888887765
No 56
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=49.31 E-value=2.9e+02 Score=27.79 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 003864 166 EPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFE 199 (790)
Q Consensus 166 ~~~I~~~L~~~~~~l~~~i~~~L~~~w~~lv~~~ 199 (790)
.......|.++...|.+.........=+.+|.||
T Consensus 138 Q~e~~~~ls~~~~~Ll~~YN~ii~~lSk~Fv~wD 171 (174)
T PF07426_consen 138 QQEESEELSEEVQELLQQYNKIILLLSKQFVQWD 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666666665555555544445555565
No 57
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.90 E-value=1.1e+02 Score=34.59 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003864 113 VKKELLELVRAIVEIGERLKGVKEALRDG 141 (790)
Q Consensus 113 ~~~~~l~~l~~l~~i~~~L~~~~~~l~~~ 141 (790)
.+..+.+.-+.+.++.+.|.++.+.++++
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777788889999999998887765
No 58
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=48.61 E-value=3.3e+02 Score=28.94 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=12.7
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHHhHH
Q 003864 57 HQDFASLFSLCNDTVSRTDEISTDLS 82 (790)
Q Consensus 57 y~~f~~~~~~~~dl~~~~~~l~~~i~ 82 (790)
|+.|........|..+|+.++.+.+.
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555544443
No 59
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.45 E-value=3.7e+02 Score=28.68 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003864 173 LRKEWLVCFEEIQELLVKFVE 193 (790)
Q Consensus 173 L~~~~~~l~~~i~~~L~~~w~ 193 (790)
+.......+..+...|...|.
T Consensus 138 l~~~l~~~r~~l~~~l~~ifp 158 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEIFP 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 667777788888888988886
No 60
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.34 E-value=3.7e+02 Score=28.66 Aligned_cols=108 Identities=9% Similarity=0.133 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhcc------CccchhHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIAS---HHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY------RPIDKEVKEI 100 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~---~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~------~~~~~~l~~~ 100 (790)
.+...++.|...++.++.++..+..+ -+.+.-...+++.++...+..+...|..+.+.+.. ..-...+...
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~ 128 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRA 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 45555788888888887776644432 33345556778888888888888888877766621 1234466677
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 101 IDEVSAKMKEA---RVKKELLELVRAIVEIGERLKGVKEA 137 (790)
Q Consensus 101 v~~~~~~~~el---~~~~~~l~~l~~l~~i~~~L~~~~~~ 137 (790)
..+++..-+++ .+....-.+=.++.+....|..++..
T Consensus 129 l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654444 33333333444445555555555444
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=48.31 E-value=6.4e+02 Score=33.24 Aligned_cols=54 Identities=6% Similarity=0.067 Sum_probs=38.7
Q ss_pred CCCCCCChhhHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHH
Q 003864 21 DQTAPLTAPDLRLLISRLE--FHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTD 75 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~--~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~ 75 (790)
.|...+.+.|+..++..+. .++..++.++. -+...|.++...-+....+...+.
T Consensus 218 ~~~~~~~~~~i~~W~~~~~~~~~~~~~r~~~~-~l~~~~~~l~~~~~~L~~l~~~l~ 273 (1201)
T PF12128_consen 218 PPKSRLKKNDIDDWLRDIRASQGFEKVRPEFD-KLQQQYRQLQALEQQLCHLHAELN 273 (1201)
T ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999886 57788888885 555667777776655444444333
No 62
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=47.94 E-value=6.4 Score=31.26 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.1
Q ss_pred cccccchhhhhhcccc
Q 003864 762 HSTFKTVDEFCFRDLI 777 (790)
Q Consensus 762 ~~~~~~~~~~~~~~~~ 777 (790)
..|.|.+.|||+||--
T Consensus 8 g~~ikdikefcyrd~~ 23 (65)
T PF13066_consen 8 GETIKDIKEFCYRDQG 23 (65)
T ss_pred CcChHHHHHHHhhhhh
Confidence 3578999999999953
No 63
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.72 E-value=3.2e+02 Score=35.22 Aligned_cols=123 Identities=17% Similarity=0.262 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHH-----H-HHHHHHHHhhhhhh-----hhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHH
Q 003864 30 DLRLLISRLEFHSLQI-----K-SKVQSYIASHHQDF-----ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~-----k-~~v~~~i~~~y~~f-----~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~ 98 (790)
++...|++++++++++ | ++|. .|...+... ...-.....+..|.+.+..+|..+...|+++ +..+.
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~-~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s--~~~i~ 938 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAKKARIK-ELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTS--DRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcC--cccHH
Confidence 4556688999998888 3 3332 333333321 1222335667788888888888888888874 66666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC
Q 003864 99 EIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (790)
Q Consensus 99 ~~v~~~~~~~~el~~~~~~l-~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~ 160 (790)
..-...+++.++++....-+ .+-+.++.+.....+ .+++|-.|.+.+.+++..+..+
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E-----~~~~~~e~~~~~~E~k~~~~~~ 996 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE-----LEKEYKEAEESLKEIKKELRDL 996 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665544422 233344444444444 3456777787777777776554
No 64
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=47.49 E-value=2.7e+02 Score=29.03 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhhHHHhHHHHHHhH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHH------QDFASLFSLCNDTVSRTDEISTDL 81 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y------~~f~~~~~~~~dl~~~~~~l~~~i 81 (790)
..+.+...|..++++..++|.+|-..+.+-. .|+..+.++..+.+...+.....+
T Consensus 43 ~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l 103 (217)
T COG1392 43 DAEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLL 103 (217)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999888722 244555554444444444444443
No 65
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=47.15 E-value=1.8e+02 Score=31.84 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=58.9
Q ss_pred hhhhhhhhhh------hhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 56 HHQDFASLFS------LCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGE 129 (790)
Q Consensus 56 ~y~~f~~~~~------~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~ 129 (790)
+|..|.|..| ..+.+....-.++.+++.+++.-. |...+++....+.+++++|+..-.+-+..=+.=+.+..
T Consensus 208 kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~--~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~ 285 (372)
T COG3524 208 KNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMN--PENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSN 285 (372)
T ss_pred hcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhH
Confidence 4445666633 345566667778888998998642 35667788888888887777654333322122223444
Q ss_pred HHHHHH-----HHHhcCcHHHHHHHHHHHHH
Q 003864 130 RLKGVK-----EALRDGRLRFAAEELRELKK 155 (790)
Q Consensus 130 ~L~~~~-----~~l~~~~l~~A~~~L~~l~~ 155 (790)
+..+++ ..+.++.|..|+..||.++-
T Consensus 286 qaAefq~l~lE~~fAekay~AAl~SlEsAri 316 (372)
T COG3524 286 QAAEFQRLYLENTFAEKAYAAALTSLESARI 316 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444443 33666777777777765543
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.46 E-value=5e+02 Score=32.62 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred hhhhhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003864 9 NVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSL 66 (790)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~ 66 (790)
-.|||......+..-..=+.|..+..++.|.+..+.++.++. -..+...+|....+-
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d-~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELD-QAESTIADLKEQVDA 442 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 356666555444333333333444444555555555555543 334444555555443
No 67
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=44.10 E-value=77 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=19.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 003864 24 APLTAPDLRLLISRLEFHSLQIKSKVQS 51 (790)
Q Consensus 24 ~~l~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (790)
..+.++.-+.+-.+|+.++.-.+.+.-+
T Consensus 41 ~~~d~~~~~~K~deLedr~~se~KRLRs 68 (228)
T PF06721_consen 41 CQDDAEKMNVKFDELEDRISSEQKRLRS 68 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888777766665554
No 68
>PRK11281 hypothetical protein; Provisional
Probab=43.48 E-value=2.5e+02 Score=36.48 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=12.6
Q ss_pred CCChhhHHHHHHHHHHH
Q 003864 25 PLTAPDLRLLISRLEFH 41 (790)
Q Consensus 25 ~l~~~dl~~~i~~l~~~ 41 (790)
+-+++++...++.+.++
T Consensus 35 ~p~~~~iq~~l~~~~~~ 51 (1113)
T PRK11281 35 LPTEADVQAQLDALNKQ 51 (1113)
T ss_pred CCCHHHHHHHHHHhhcC
Confidence 45777899888887664
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.15 E-value=1.8e+02 Score=30.12 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYI 53 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i 53 (790)
|..+.++.+++.++++++.+..+.-
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999998877643
No 70
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=41.98 E-value=4.4e+02 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003864 105 SAKMKEARVKKELLELVRAIVEI 127 (790)
Q Consensus 105 ~~~~~el~~~~~~l~~l~~l~~i 127 (790)
+..+.|++.++.-++.|+.++-.
T Consensus 143 errk~ElEr~rkRle~LqsiRP~ 165 (338)
T KOG3647|consen 143 ERRKAELERTRKRLEALQSIRPA 165 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhcchH
Confidence 34477888888888777777643
No 71
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.93 E-value=8e+02 Score=31.87 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=21.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 003864 24 APLTAPDLRLLISRLEFHSLQIKSKVQS 51 (790)
Q Consensus 24 ~~l~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (790)
+|-+-+++...++++..+.+++++++++
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~~~ 803 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQLHE 803 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568888999999999999988753
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.58 E-value=2.6e+02 Score=30.83 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCcc
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSY--------------IASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPI 93 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~--------------i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~ 93 (790)
.|+++.+...|..++.+++..+.++ |.+-..+.....+...+...+..++..+|......
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~------ 247 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK------ 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred chhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 003864 94 DKEVKEIIDEVSAK--------MKEARVKKELLELVRAIVEI 127 (790)
Q Consensus 94 ~~~l~~~v~~~~~~--------~~el~~~~~~l~~l~~l~~i 127 (790)
.+++...+.+++.. ..|+...++.+..|+.+..+
T Consensus 248 k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~ 289 (312)
T smart00787 248 KSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
No 73
>PTZ00464 SNF-7-like protein; Provisional
Probab=41.23 E-value=4.3e+02 Score=27.46 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQ 50 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~ 50 (790)
.+.-.+.++..|.+.+..+|.
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~ 35 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARIN 35 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666663
No 74
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=40.42 E-value=6e+02 Score=28.87 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC
Q 003864 124 IVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (790)
Q Consensus 124 l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~ 160 (790)
|++++.-+...+. ..+++..++..|+.++..+...
T Consensus 87 V~~it~dIk~LD~--AKrNLT~SIT~LkrL~MLv~a~ 121 (383)
T PF04100_consen 87 VQEITRDIKQLDN--AKRNLTQSITTLKRLQMLVTAV 121 (383)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 3566777777777666665554
No 75
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.05 E-value=9.5e+02 Score=31.99 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhH-HHHHHHH----HHHHHHHHHHHHHH
Q 003864 116 ELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLV-YGLLRKE----WLVCFEEIQELLVK 190 (790)
Q Consensus 116 ~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I-~~~L~~~----~~~l~~~i~~~L~~ 190 (790)
.......+++.+...+...+..+++.+|-.|-....+..-.+........+..- +++|..- .......|-..+.+
T Consensus 1069 ~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 1148 (1311)
T TIGR00606 1069 NHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRD 1148 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888888888888887766666666655444433332211111111 1222222 23345566777889
Q ss_pred HHhhhhc
Q 003864 191 FVESAVR 197 (790)
Q Consensus 191 ~w~~lv~ 197 (790)
.|.....
T Consensus 1149 ~w~~~~~ 1155 (1311)
T TIGR00606 1149 LWRSTYR 1155 (1311)
T ss_pred HHHHHcC
Confidence 9987654
No 76
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=40.03 E-value=5.4e+02 Score=28.27 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=67.8
Q ss_pred ecchHHHHHHHhhhhhhhc-cCCCcchhhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhhh
Q 003864 516 HNDCLYLSQEILGFAFEYH-SDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFES 594 (790)
Q Consensus 516 yNDC~YLA~~L~~l~~~~~-~~lp~~l~~~~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~a~gf~~~~~~~~~e~ 594 (790)
-.=|.||.+.+..+-.... ..-+..+.....|-+. |+.||..+...++.- +.|++ +.-.+.++......+
T Consensus 106 e~Ac~~le~~l~~~~~~~~~~~~~~~l~a~~~f~~~----r~~Ae~~I~~lv~~K---IDe~l-ela~yDW~~~~~~~~- 176 (311)
T PF04091_consen 106 EKACKELEEFLSSLRGIPQSAGGHIRLKATKMFKDA----RKAAEKRIFELVNSK---IDEFL-ELAEYDWTPTEPPGE- 176 (311)
T ss_dssp HTTHHHHHHHHHHHHT----------------S-------TTHHHHHHHHHHHHH---HHHHH-TT--TT--------S-
T ss_pred HHHHHHHHHHHHHHcCCCccchHhHhhhhHHHHHHH----HHHHHHHHHHHHHHH---HHHHH-hhcccceecCCCCCC-
Confidence 3345556555544432111 0111123333455444 467777776666544 55666 334577753322222
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHH
Q 003864 595 AKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDIL--LLDDMAAEETLQLQRLIHLM 662 (790)
Q Consensus 595 ~e~av~q~l~~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~Il--~l~DIs~~es~~L~~l~~~~ 662 (790)
....+..++.-|+.+-..-...||+++...+.-..++.+.+.+++-++ +..-|+..--.++..=+..+
T Consensus 177 ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~l 246 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYL 246 (311)
T ss_dssp --HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHH
Confidence 245788999999999977788999988888888888888888887774 45566666555554444444
No 77
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=39.74 E-value=4.6e+02 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIAS 55 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~ 55 (790)
.+|...++.++..+++++...-..+..
T Consensus 157 ~~l~~~L~~ie~~v~~v~~~~P~~~~~ 183 (290)
T COG1561 157 ADLLQRLDAIEELVEKVESLMPEILEW 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 456666666666666666554444443
No 78
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.52 E-value=2.5e+02 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 003864 34 LISRLEFHSLQIKSKVQSYIASHHQ 58 (790)
Q Consensus 34 ~i~~l~~~~~e~k~~v~~~i~~~y~ 58 (790)
.+++|...+.+..+++. .++..+.
T Consensus 17 ~ve~L~s~lr~~E~E~~-~l~~el~ 40 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELA-SLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 56666666666666666 3444444
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.05 E-value=3.3e+02 Score=33.12 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhHHHhHHHHHHhHHH
Q 003864 59 DFASLFSLCNDTVSRTDEISTDLSD 83 (790)
Q Consensus 59 ~f~~~~~~~~dl~~~~~~l~~~i~~ 83 (790)
.+..+......+..+.+.+..+|..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555566666666666653
No 80
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.22 E-value=5e+02 Score=31.46 Aligned_cols=128 Identities=20% Similarity=0.107 Sum_probs=60.5
Q ss_pred hHHHhHHHHHHhHHHHHhhhccC--------ccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 003864 69 DTVSRTDEISTDLSDILGLISYR--------PIDKEVKEIIDEVSAKM--KEARVKKELLELVRAIVEIGERL---KGVK 135 (790)
Q Consensus 69 dl~~~~~~l~~~i~~l~~~i~~~--------~~~~~l~~~v~~~~~~~--~el~~~~~~l~~l~~l~~i~~~L---~~~~ 135 (790)
+..-+|+++.+-||.+.+.|++= .+-+.++..++-.+++. -+++. ..-..++++|..+-.+| ++..
T Consensus 215 aSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n-~Nn~kL~eEl~kvin~L~vp~shi 293 (867)
T KOG2148|consen 215 ASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQN-VNNKKLIEELDKVINRLDVPSSHI 293 (867)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhc-cchHHHHHHHHHHHHhccCcHHHH
Confidence 34445555555555555544330 02223344444444432 22221 11122445554444444 4566
Q ss_pred HHHhcCcHHHH---HHHHHHHHHHhhcC-----CCCCChhhHHHHHHHHHHHHHHHHH----HHHHHHHhhhhc
Q 003864 136 EALRDGRLRFA---AEELRELKKDLRVG-----DENASEPLVYGLLRKEWLVCFEEIQ----ELLVKFVESAVR 197 (790)
Q Consensus 136 ~~l~~~~l~~A---~~~L~~l~~~l~~~-----~~~~~~~~I~~~L~~~~~~l~~~i~----~~L~~~w~~lv~ 197 (790)
+++.+|++..| ++.+..+-+++.+. +...-..+.++.=+.+...+++.+. ..|++.|..+..
T Consensus 294 ~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~FvrrlssfLnnlF~~l~d 367 (867)
T KOG2148|consen 294 AALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRLSSFLNNLFASLGD 367 (867)
T ss_pred HhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888887665 33444444444433 1112334445555556665665554 555566655544
No 81
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=38.14 E-value=5.1e+02 Score=27.78 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHS 42 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~ 42 (790)
..++...++.+..-.
T Consensus 129 ~~~l~~ll~~~~~ll 143 (291)
T TIGR00996 129 PPEIDDLLGSLTRLL 143 (291)
T ss_pred CccHHHHHHHHHHHH
Confidence 336666666655444
No 82
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.00 E-value=5.8e+02 Score=29.97 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhh-ccCccchhHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIAS-------HHQDFASLFSLCNDTVSRTDEISTDLSDILGLI-SYRPIDKEVKE 99 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~-------~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i-~~~~~~~~l~~ 99 (790)
-|-|..++.-+..++.+++.+++-+... .-.-|.-..+.-.|+.+++..+++.|....... ..-+-...+-.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777643322 222233334555566666666655554321111 00011222333
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 100 IIDEVSAKMKEAR-VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 100 ~v~~~~~~~~el~-~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
.+-|++++.+.+. .+..+-+.|..-+..+..+..-.+. .+.+|.+-+..+.+++..|+...
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E-leDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE-LEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333333332 2344444444444444444332222 34567777888888888877764
No 83
>PRK01156 chromosome segregation protein; Provisional
Probab=37.72 E-value=4.6e+02 Score=33.18 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhhcCC
Q 003864 127 IGERLKGVKEALRD-GRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 127 i~~~L~~~~~~l~~-~~l~~A~~~L~~l~~~l~~~~ 161 (790)
+...+...+.+... ..+..++..+..++.+++...
T Consensus 714 l~eel~~~~~~~~~l~~~~~~~~~l~~~r~~l~k~~ 749 (895)
T PRK01156 714 LSDRINDINETLESMKKIKKAIGDLKRLREAFDKSG 749 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444444443322 223445555566666665543
No 84
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=36.56 E-value=3.3e+02 Score=32.78 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhh---ccCccchhHHHHHHHHHHHHHHHH
Q 003864 36 SRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI---SYRPIDKEVKEIIDEVSAKMKEAR 112 (790)
Q Consensus 36 ~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i---~~~~~~~~l~~~v~~~~~~~~el~ 112 (790)
+.+..++.++..++.+.=..=+.-....+.-......+.+.+..+.+.+.+-| -+++++..+...+.++.++.++++
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~ 89 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELK 89 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence 45666666666666544444444344445556667777777777777655533 222355566666666655433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 113 VKKELLELVRAIVEIGERLKGVKEA 137 (790)
Q Consensus 113 ~~~~~l~~l~~l~~i~~~L~~~~~~ 137 (790)
.-++..+.+..+-+.|.+++++
T Consensus 90 ---~eL~~~~~~l~~L~~L~~i~~~ 111 (593)
T PF06248_consen 90 ---RELEENEQLLEVLEQLQEIDEL 111 (593)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333344444444444443
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.10 E-value=8.9e+02 Score=32.26 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=18.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQS 51 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (790)
+.++|...|+.+..+++.++.++-+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~ 847 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIEL 847 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888887666554
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.06 E-value=8.3e+02 Score=29.24 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHHHhhcCC
Q 003864 123 AIVEIGERLKGVKEALRDGR-----------LRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 123 ~l~~i~~~L~~~~~~l~~~~-----------l~~A~~~L~~l~~~l~~~~ 161 (790)
.+..+...+..+...+...+ +..+-..++++...|+.++
T Consensus 419 kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~ 468 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKP 468 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33444445555554444432 3344455556666666643
No 87
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.39 E-value=3.3e+02 Score=25.70 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=40.4
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhh---hhHHHhHHHHHHhHHHHHhh
Q 003864 16 THDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ---DFASLFSLC---NDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 16 ~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~---~f~~~~~~~---~dl~~~~~~l~~~i~~l~~~ 87 (790)
+++....++.-.-+-|...|-+++.++..+|.++...-..+=. +++.++... .....++.+|..+++.+..+
T Consensus 6 ~s~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 6 VSTSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344434444455678888888888888888888766554432 344444333 22334444444444444443
No 88
>PRK13658 hypothetical protein; Provisional
Probab=35.24 E-value=92 Score=25.06 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Q 003864 125 VEIGERLKGVKEALRDGRLRFAAEELRELKKDL 157 (790)
Q Consensus 125 ~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l 157 (790)
+.+-++++.+=.-+-.|+|.+|+.+||-++..|
T Consensus 7 q~~A~RIDTVLDILVAGdyHSAI~NLEILKaEL 39 (59)
T PRK13658 7 QRVAERIDTVLDILVAGDYHSAIHNLEILKAEL 39 (59)
T ss_pred HHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 456677888888889999999999999888776
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.23 E-value=2.5e+02 Score=30.96 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHh
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILG 86 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~ 86 (790)
=...++++|+.+.++.+.|.. .|..|...++...+.....+++.++++.++.
T Consensus 6 C~~~l~~~l~~~~~~~~~E~~-----~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~ 57 (314)
T PF04111_consen 6 CTDLLLEQLDKQLEQAEKERD-----TYQEFLKKLEEESDSEEDIEELEEELEKLEQ 57 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 345678888888888888764 5677887777555555556666666665443
No 90
>PRK09039 hypothetical protein; Validated
Probab=35.06 E-value=6.4e+02 Score=28.15 Aligned_cols=48 Identities=21% Similarity=0.143 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhhhHHHhHHHHHHhHHH
Q 003864 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASL-FSLCNDTVSRTDEISTDLSD 83 (790)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~-~~~~~dl~~~~~~l~~~i~~ 83 (790)
|..-|+..+.++.++.++|.. -++-..+ .++..++..++.+++.+++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~-----L~e~L~le~~~~~~l~~~l~~l~~~l~~ 92 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE-----LADLLSLERQGNQDLQDSVANLRASLSA 92 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344556666666666666554 2222222 24455555555555555553
No 91
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=33.49 E-value=4.8e+02 Score=25.70 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=65.3
Q ss_pred hhhhhHHHhHHHHHHhHHHHHhh---hccCccchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 65 SLCNDTVSRTDEISTDLSDILGL---ISYRPIDKEVKEIIDEVSAKMKEA----RVKKELLELVRAIVEIGERLKGVKEA 137 (790)
Q Consensus 65 ~~~~dl~~~~~~l~~~i~~l~~~---i~~~~~~~~l~~~v~~~~~~~~el----~~~~~~l~~l~~l~~i~~~L~~~~~~ 137 (790)
..|..+..+++++.+.++.+... |+. ....++.+-+++-..+..+ +.-...+.-.+.+-.+.+.|......
T Consensus 14 ~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~--kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~s 91 (157)
T PF04136_consen 14 EECDQLLDQTDEILDQLDELQEQYNSVSE--KTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSS 91 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCc
Confidence 34666666677666666655543 222 1333333333333322222 22233344445555556666655555
Q ss_pred HhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003864 138 LRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESA 195 (790)
Q Consensus 138 l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~w~~l 195 (790)
+....|..-+..|++-=.-|+.-+ ..+++.+|. .++..|..+-...+...+...
T Consensus 92 V~~~~F~~~L~~LD~cl~Fl~~h~-~fkea~~Y~---~rf~q~ltRAl~lIk~y~~~~ 145 (157)
T PF04136_consen 92 VNSDSFKPMLSRLDECLEFLEEHP-NFKEAEVYL---IRFRQCLTRALTLIKNYVVNT 145 (157)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhh-hhhhhHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 666667655555544444444433 368888887 566666666665555555443
No 92
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.41 E-value=55 Score=26.93 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 003864 23 TAPLTAPDLRLLISRLEFHSLQIKSKVQSY 52 (790)
Q Consensus 23 ~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~ 52 (790)
=++||-++|...|.-|+.+|++++.++..-
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999987643
No 93
>PRK11637 AmiB activator; Provisional
Probab=33.01 E-value=8e+02 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQ 50 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~ 50 (790)
..++...++.+..++.+++.++.
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888887777776
No 94
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=32.85 E-value=2e+02 Score=25.32 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCcccCCCccchhHhhHHHhHHHHHHHHHhHHHHHHHHHhhhh
Q 003864 352 DFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQ 412 (790)
Q Consensus 352 ~f~~vi~~~~~Fe~~L~~lgf~~~~~~~~~~L~~~v~~v~~~f~~krr~~~L~~aR~l~~~ 412 (790)
.|+..++...+....|..-..-- +..|..|-+.+. +.|.|+..|..||..+..
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~L-----e~sl~~~erG~~---L~k~c~~~L~~Ae~~v~~ 63 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPL-----EEALKEFERGMA---LYKECQEKLQQAEQRVEK 63 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 78888888888888887544332 568888888776 789999999999977763
No 95
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=32.55 E-value=6.2e+02 Score=26.68 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=4.1
Q ss_pred hhhHHHHHH
Q 003864 166 EPLVYGLLR 174 (790)
Q Consensus 166 ~~~I~~~L~ 174 (790)
+..|+.+|.
T Consensus 224 Dd~Iv~aln 232 (247)
T PF06705_consen 224 DDDIVQALN 232 (247)
T ss_pred hhHHHHHHH
Confidence 444554444
No 96
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=32.22 E-value=1.2e+02 Score=24.33 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFAS 62 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~ 62 (790)
.+.-+.+-|+.|.+..++-|.|+.+-|+..|.....
T Consensus 5 ~~~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk 40 (56)
T PF08112_consen 5 DKSTIDKYISILKSKLDEKKSEILSNLNMEYEKILK 40 (56)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999985543
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=31.23 E-value=6.8e+02 Score=34.17 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLF-SLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~-~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~ 107 (790)
.++...|..|.+.+..+|.+..+....... +.... ....+...+++.+..+++.++..+.. +...+.......+.+
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~-l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~--~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRE-LTNSLEKQLENAQNLVDELESELKSLLTSLDS--VSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 366778888888888888887766654333 33333 44556677777777777766655433 333334443444443
Q ss_pred HHHH
Q 003864 108 MKEA 111 (790)
Q Consensus 108 ~~el 111 (790)
.++|
T Consensus 878 ~k~l 881 (1822)
T KOG4674|consen 878 EKRL 881 (1822)
T ss_pred HHHH
Confidence 3333
No 98
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=31.15 E-value=70 Score=30.82 Aligned_cols=52 Identities=8% Similarity=0.137 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhhhHHHhHHHHHHhHHHHHhhhcc
Q 003864 38 LEFHSLQIKSKVQSYIASHHQDFASLFS-LCNDTVSRTDEISTDLSDILGLISY 90 (790)
Q Consensus 38 l~~~~~e~k~~v~~~i~~~y~~f~~~~~-~~~dl~~~~~~l~~~i~~l~~~i~~ 90 (790)
+-....+++.|.. +++..|++|+++.. -...+.++-..++++|..+++.+|.
T Consensus 53 igsQ~~qlq~dl~-tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEk 105 (138)
T PF03954_consen 53 IGSQNSQLQRDLR-TLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEK 105 (138)
T ss_pred hcCccHHHHHHHH-HHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHH
Confidence 3456678888877 88999999998853 3555666666667777666666554
No 99
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.89 E-value=2.9e+02 Score=26.36 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=11.0
Q ss_pred hhhHHHhHHHHHHhHHHHHhh
Q 003864 67 CNDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 67 ~~dl~~~~~~l~~~i~~l~~~ 87 (790)
|.....|++++++.|...|..
T Consensus 45 ~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443
No 100
>PRK03918 chromosome segregation protein; Provisional
Probab=30.49 E-value=1.2e+03 Score=29.30 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=2.2
Q ss_pred HHHHHh
Q 003864 188 LVKFVE 193 (790)
Q Consensus 188 L~~~w~ 193 (790)
+...++
T Consensus 745 l~~~~~ 750 (880)
T PRK03918 745 VGEIAS 750 (880)
T ss_pred HHHHHH
Confidence 333333
No 101
>PRK10869 recombination and repair protein; Provisional
Probab=30.28 E-value=1e+03 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=19.6
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYI 53 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i 53 (790)
+| .|-+-+.|.....+|.+ .++++..+.+..
T Consensus 201 ~l-~~gE~eeL~~e~~~L~n-~e~i~~~~~~~~ 231 (553)
T PRK10869 201 AP-QPGEFEQIDEEYKRLAN-SGQLLTTSQNAL 231 (553)
T ss_pred CC-CCCcHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55 47788888888888865 344444444433
No 102
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=30.24 E-value=6.7e+02 Score=26.40 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=71.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCcc--chhH
Q 003864 20 TDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPI--DKEV 97 (790)
Q Consensus 20 ~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~--~~~l 97 (790)
..|..++++.+-+..++.+..++.++++--.+.=.+.|. +.-.++..++.+|...|+..-.... ++ ...+
T Consensus 6 ~~~~~~~~~~~a~~~~~~vn~~i~~L~~~q~~v~~~~~~------~~I~~ll~ta~~l~~~l~~~~~G~~--~~ydl~sI 77 (228)
T PF07373_consen 6 SQPATNLSTSEAQQELQDVNARIAQLQSIQKSVKGSDYE------KEINKLLKTAFELKQSLEKIAEGGI--TIYDLDSI 77 (228)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHH------HHHHHHHHHHHHHHHHHHHHhcCCC--cccchhhH
Confidence 356788999999999999999999988753332233333 4455566666667766664332111 12 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhcCcHHHHHHHHHHHHHHhhcCC
Q 003864 98 KEIIDEVSAKMKEARVKKELLELVRAIVEIGERLK---------GVKEALRDGRLRFAAEELRELKKDLRVGD 161 (790)
Q Consensus 98 ~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~---------~~~~~l~~~~l~~A~~~L~~l~~~l~~~~ 161 (790)
..+|+-+..--+-|.+.. ..+...++..|..++ -++-.-...++.++++.|+.+...+...|
T Consensus 78 ~~Ri~Ll~~~~~aI~~~t--t~L~~KVq~AH~~~g~~it~aii~~~npfat~~ql~~~i~~l~~~~~kv~~yP 148 (228)
T PF07373_consen 78 PARIELLIDVGDAIHFAT--TELQYKVQAAHVEIGFEITKAIIRAINPFATVDQLKDEIEALKALLEKVLQYP 148 (228)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 666665554322222211 111222222222222 12222334457777777777777766654
No 103
>PLN03217 transcription factor ATBS1; Provisional
Probab=29.96 E-value=2.9e+02 Score=24.50 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=33.7
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhh
Q 003864 23 TAPLTAPDLRLLISRLEFHSLQIKS--------------KVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 23 ~~~l~~~dl~~~i~~l~~~~~e~k~--------------~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~ 87 (790)
+++.+.+.+..++++|..-.-|++. |.|+||++ ++-.++.|++.+..|..-
T Consensus 14 s~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrs--------------LhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN--------------LHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc
Confidence 3488999999999999876666654 55555552 344566666666655543
No 104
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=29.79 E-value=8.7e+02 Score=27.54 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=63.4
Q ss_pred hhhhhhHHHhHHHHHHhHHHHHhhhcc------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 64 FSLCNDTVSRTDEISTDLSDILGLISY------RPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA 137 (790)
Q Consensus 64 ~~~~~dl~~~~~~l~~~i~~l~~~i~~------~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~ 137 (790)
++.|......+..|...|+.+.....+ .-+...++..|.+....+.+++ +++..++++|......+...+.+
T Consensus 210 i~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le--~ql~~~~~ei~~~e~~i~~L~~a 287 (384)
T PF03148_consen 210 IQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELE--WQLKKTLQEIAEMEKNIEDLEKA 287 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666643333211 0133456666666666655554 45566778888888888888888
Q ss_pred HhcCcHH-HHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHH
Q 003864 138 LRDGRLR-FAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQ 185 (790)
Q Consensus 138 l~~~~l~-~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~ 185 (790)
+..+.-. .-|+. .+..--...+.....-.+...|..|+..++..+.
T Consensus 288 i~~k~~~lkvaqT--RL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~ 334 (384)
T PF03148_consen 288 IRDKEGPLKVAQT--RLENRTQRPNVELCRDPPQYGLIEEVKELRESIE 334 (384)
T ss_pred HHHHHhhHHHHHH--HHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7665422 22221 2222223333323333445556666766665543
No 105
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.73 E-value=8.8e+02 Score=31.68 Aligned_cols=18 Identities=0% Similarity=-0.034 Sum_probs=13.6
Q ss_pred CCChhhHHHHHHHHHHHH
Q 003864 25 PLTAPDLRLLISRLEFHS 42 (790)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~ 42 (790)
+.++++++..++.+....
T Consensus 22 ~p~~~~iq~~l~~~~~~~ 39 (1109)
T PRK10929 22 APDEKQITQELEQAKAAK 39 (1109)
T ss_pred CCCHHHHHHHHHHhhcCC
Confidence 467788998888887653
No 106
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.68 E-value=8.9e+02 Score=27.67 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh----hhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 003864 42 SLQIKSKVQSYIASHHQDFASLFSL----CNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL 117 (790)
Q Consensus 42 ~~e~k~~v~~~i~~~y~~f~~~~~~----~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~ 117 (790)
.-+.|.+..+++...-.|++..++. ...-......++..|..+++. ++..+...|...+-..-|....++.
T Consensus 311 ~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~-----vq~qma~lv~a~e~i~~e~~rl~q~ 385 (542)
T KOG0993|consen 311 LIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSE-----VQKQMARLVVASETIADEDSRLRQI 385 (542)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665555432 222222233333333333332 1222222222222223333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC--CCCChhhHHHHHHHHHHHHHHHH
Q 003864 118 LELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD--ENASEPLVYGLLRKEWLVCFEEI 184 (790)
Q Consensus 118 l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~--~~~~~~~I~~~L~~~~~~l~~~i 184 (790)
...+.....++..+..++ ..++.+|++.|.++-..-...- .-.-.-.|-..|+.+...|+..|
T Consensus 386 nd~l~~~~~l~t~~Qq~e----~~~lp~ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eql 450 (542)
T KOG0993|consen 386 NDLLTTVGELETQVQQAE----VQNLPAAVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQL 450 (542)
T ss_pred HHhhhhccccccchhHhh----hhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444332 2456677666665433221110 00012234445666666666555
No 107
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.43 E-value=5.8e+02 Score=25.44 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKV 49 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v 49 (790)
+....+.++..+..+....+
T Consensus 85 ~~~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERI 104 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.21 E-value=1e+03 Score=28.07 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKV 49 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v 49 (790)
++...+.++..++..++.++
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 109
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.18 E-value=8.6e+02 Score=31.26 Aligned_cols=21 Identities=14% Similarity=0.570 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 003864 175 KEWLVCFEEIQELLVKFVESA 195 (790)
Q Consensus 175 ~~~~~l~~~i~~~L~~~w~~l 195 (790)
+....|++.+..+++..++.+
T Consensus 993 ~~F~~~F~~va~~Id~IYK~L 1013 (1141)
T KOG0018|consen 993 ERFMACFEHVADNIDRIYKEL 1013 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445557777777777777765
No 110
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=28.80 E-value=7.3e+02 Score=26.36 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 003864 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQS 51 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (790)
|+-.--+.||++..+.+|..++..++-...+
T Consensus 4 d~ea~~~eed~rL~v~~LhHQvlTLqcQLRD 34 (277)
T PF15030_consen 4 DSEAEASEEDLRLRVQQLHHQVLTLQCQLRD 34 (277)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667899999999999999999876654
No 111
>PF14906 DUF4495: Domain of unknown function (DUF4495)
Probab=28.61 E-value=5e+02 Score=28.70 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=47.3
Q ss_pred HHhccCCCCCCcch--hhhhhhHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 003864 575 EALDGADGFQNTHQ--IQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRD 640 (790)
Q Consensus 575 e~L~~a~gf~~~~~--~~~~e~~e~av~q~l~~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~ 640 (790)
-+|.+|++-...+. =++.|+|..+|.-==.-+..++.--=.++|+..=++.++.+++.-+.-+..+
T Consensus 93 ~ILQDAeSh~W~d~k~FyEgERcSfsiQMW~yy~~glr~DLW~~lPpk~AQ~Ila~vL~eSL~~L~~R 160 (321)
T PF14906_consen 93 SILQDAESHHWDDPKPFYEGERCSFSIQMWHYYMCGLRHDLWTILPPKLAQRILAEVLEESLQLLASR 160 (321)
T ss_pred HHhhccccCCcccCCcccccCCCchhHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666554332 2345788989987777788888776788999888888888888777655544
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.52 E-value=1.6e+03 Score=30.36 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhcccCCC
Q 003864 599 IEQVVFILEKVHIIWEPLLL 618 (790)
Q Consensus 599 v~q~l~~L~~L~~~W~~vLp 618 (790)
...+...+..++..|.+||-
T Consensus 1104 ~~~~re~I~~aK~~W~~v~~ 1123 (1486)
T PRK04863 1104 YHEMREQVVNAKAGWCAVLR 1123 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666654
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.42 E-value=7.7e+02 Score=26.16 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIA 54 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~ 54 (790)
+++..+.++..+.++++.+|.+.+.
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666
No 114
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.32 E-value=2.9e+02 Score=24.14 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=31.0
Q ss_pred hhhHHHhHHHHHHhHHHHHhhhccCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 67 CNDTVSRTDEISTDLSDILGLISYRP-IDKEVKEIIDEVSAKMKEARVKKELLELVR 122 (790)
Q Consensus 67 ~~dl~~~~~~l~~~i~~l~~~i~~~~-~~~~l~~~v~~~~~~~~el~~~~~~l~~l~ 122 (790)
+.|+...+.+|..+|..+++.|++-| +...+-..-.+++.++.++...++++.-++
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666655554311 333444555555666666666666655444
No 115
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.09 E-value=7.5e+02 Score=25.96 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHH-
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK- 107 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~- 107 (790)
.-|...|..+.....+++..+-..|..++. .-....+...+..++...-..+...= ...--+.++.+.+.+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~----~e~~~~~~~~~~~k~e~~A~~Al~~g----~E~LAr~al~~~~~le 98 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQ----LERKLEEAQARAEKLEEKAELALQAG----NEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHH
Confidence 478888888888888888888877776554 22223444445555555544433320 111222333333322
Q ss_pred ------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC
Q 003864 108 ------MKEARV-KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (790)
Q Consensus 108 ------~~el~~-~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~ 160 (790)
.+++.. ...+..+=.++..+...+.+++.- .+...|...-.++...++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~---~~~l~ar~~~akA~~~v~~~ 155 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK---KEALKARKAAAKAQEKVNRS 155 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 222222 233333334455566666665553 34445555555555555444
No 116
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=26.49 E-value=2.7e+02 Score=24.65 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhcc
Q 003864 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (790)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~ 90 (790)
+-++++.-.....+........+.....+|....+.+.+.-...+.+...|+.++..++.
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666667777777777778888887777777777788888877776543
No 117
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=26.01 E-value=8.9e+02 Score=26.78 Aligned_cols=20 Identities=5% Similarity=0.288 Sum_probs=11.7
Q ss_pred eecchHHHHHHHhhhhhhhc
Q 003864 515 MHNDCLYLSQEILGFAFEYH 534 (790)
Q Consensus 515 ~yNDC~YLA~~L~~l~~~~~ 534 (790)
.+.-|||.+..+...|..|+
T Consensus 295 ll~q~~y~~~S~~r~g~DF~ 314 (338)
T PF04124_consen 295 LLTQLMYFASSFGRVGADFR 314 (338)
T ss_pred HHHHHHHHHHhcCccCCChH
Confidence 34456666666666665544
No 118
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.71 E-value=7.4e+02 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHH 57 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y 57 (790)
.-|+..|-.+...+.+++..+...+....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~ 54 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQK 54 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888887666443
No 119
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.69 E-value=3.8e+02 Score=29.86 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred hhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHH
Q 003864 67 CNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRA-IVEIGERLKGVKEALRDGRLRF 145 (790)
Q Consensus 67 ~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~-l~~i~~~L~~~~~~l~~~~l~~ 145 (790)
-.+...+|+.++.++...+..++. ...+....++.....+.+.+..+......+. +.....-+.+. ..--+.++..
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~--k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~-~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEE--KQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEI-KEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344555666666776655544433 2223333333333222222222222222211 11111111111 2223456788
Q ss_pred HHHHHHHHHHHhhcCC
Q 003864 146 AAEELRELKKDLRVGD 161 (790)
Q Consensus 146 A~~~L~~l~~~l~~~~ 161 (790)
|...|+++..+++.++
T Consensus 87 a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 87 AEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888888886
No 120
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.53 E-value=8.6e+02 Score=26.08 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=23.6
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003864 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASH 56 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~ 56 (790)
||..+-+.+.....+-+...++.+....+.+.+..+
T Consensus 124 ~p~~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~~~ 159 (284)
T PF12805_consen 124 DPDQHDDDEQLRIELAQQQIKVNEALEQARELLLRR 159 (284)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566655566666666667777777766666666655
No 121
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.27 E-value=4.4e+02 Score=23.00 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003864 33 LLISRLEFHSLQIKSKV 49 (790)
Q Consensus 33 ~~i~~l~~~~~e~k~~v 49 (790)
+.++++.+.+++++.++
T Consensus 26 ~~l~~~~~ti~~l~~~~ 42 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQV 42 (90)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33333333333333333
No 122
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.49 E-value=9e+02 Score=28.48 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003864 171 GLLRKEWLVCFEEIQELLV 189 (790)
Q Consensus 171 ~~L~~~~~~l~~~i~~~L~ 189 (790)
+-+.+++.+|...+++.=.
T Consensus 278 ~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 278 EELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466777777777765533
No 123
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.48 E-value=4.5e+02 Score=31.08 Aligned_cols=50 Identities=8% Similarity=0.210 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhh
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~ 87 (790)
-|...+.++....+.+|.+|- .++..|- .+.+...-+++..++|+.+.+.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie-~V~~sY~-------l~e~e~~~vr~~e~eL~el~~~ 362 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIE-RVKESYR-------LAETELGSVRKFEKELKELESV 362 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHhc-------cChhHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888876 5665554 3444455555555555544443
No 124
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.25 E-value=5.3e+02 Score=28.69 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhh
Q 003864 9 NVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (790)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i 88 (790)
.+++.-..+..-||.. ++.-....+++|+.+..+++.+..+ +...|. +.-.....+..+.+++...|+.....+
T Consensus 192 ~l~~fr~~~~~~d~~~--~~~~~~~~i~~L~~~l~~~~~~l~~-l~~~~~---~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 192 ELLKYQIKNKVFDPKA--QSSAQLSLISTLEGELIRVQAQLAQ-LRSITP---EQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHhCCCcChHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCC---CCCCchHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 89 SYRPIDKEVKEIIDEVSAKMKEARVKKELLELV 121 (790)
Q Consensus 89 ~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l 121 (790)
.. .....+.....+++.++++.+..+.+.+.+
T Consensus 266 ~~-~~~~~l~~~~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 266 SG-GLGDSLNEQTADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred hc-CCCccHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.15 E-value=7.7e+02 Score=25.09 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=26.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhhhhhhhh
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQ------SYIASHHQDFASLFSL 66 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~------~~i~~~y~~f~~~~~~ 66 (790)
+=.+++..|++|+..+..+..-.. .-+.+.|.+|.+.++.
T Consensus 15 eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ 60 (200)
T cd07624 15 EFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL 60 (200)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888887776655444 2344556667777655
No 126
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=23.88 E-value=7.3e+02 Score=24.74 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=63.9
Q ss_pred HhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcH
Q 003864 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAI--------VEIGERLKGVKEALRDGRL 143 (790)
Q Consensus 72 ~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l--------~~i~~~L~~~~~~l~~~~l 143 (790)
.+.++|..+|++.++- ....+++....+...+--++-..+..+...... ..++-.+.-++-++..+++
T Consensus 14 ~~~~~Le~elk~~~~n----~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 14 EELEKLEAELKDAKSN----LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 4566677777765543 577788888888888765555555555555544 3566677788999999999
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 003864 144 RFAAEELRELKKDLRVGD 161 (790)
Q Consensus 144 ~~A~~~L~~l~~~l~~~~ 161 (790)
..+...+.+++..++..+
T Consensus 90 ~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999998864
No 127
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=4.7e+02 Score=31.44 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003864 31 LRLLISRLEFHSLQIKSKVQ 50 (790)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~ 50 (790)
..+.|..+.+.+++++.++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~ 439 (652)
T COG2433 420 YEKRIKKLEETVERLEEENS 439 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 128
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=23.67 E-value=2.3e+02 Score=31.19 Aligned_cols=8 Identities=25% Similarity=0.023 Sum_probs=4.6
Q ss_pred CCeEEEEE
Q 003864 202 SNRVLVKY 209 (790)
Q Consensus 202 ~~~i~v~~ 209 (790)
.+.+.|.+
T Consensus 220 ~G~~~v~~ 227 (322)
T TIGR02492 220 DGTVNVYT 227 (322)
T ss_pred CCcEEEEE
Confidence 46666654
No 129
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.45 E-value=1.3e+03 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=17.7
Q ss_pred cccchhhhhhhhcCCCCCCCCCCChh
Q 003864 4 LFDTINVRDLLSTHDLTDQTAPLTAP 29 (790)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 29 (790)
+|..--+|.-.+.-+..|..+++.++
T Consensus 196 ~f~dy~~~~Y~~fl~g~d~~~~~~~E 221 (581)
T KOG0995|consen 196 LFFDYTIRSYTSFLKGEDNSSELEDE 221 (581)
T ss_pred HHHHHHHHHHHHHhccCcccchHHHH
Confidence 45556677777777776667776664
No 130
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.10 E-value=1e+03 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYI 53 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i 53 (790)
-+-|.+++..|+.+...++.+++..-
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36799999999999999999987543
No 131
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.09 E-value=7.6e+02 Score=24.63 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHh
Q 003864 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILG 86 (790)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~ 86 (790)
.+|.|+....-.......++|+++...-++. |+ .+..+...|+.+++.++.
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~---~~-------~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSE---FA-------ELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHH
Confidence 5678888888888888899998888644432 22 334444555555554443
No 132
>PLN02372 violaxanthin de-epoxidase
Probab=23.03 E-value=1.1e+03 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=11.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 003864 20 TDQTAPLTAPDLRLLISRLEFHSLQIKSKV 49 (790)
Q Consensus 20 ~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v 49 (790)
|+|-+|| ++||+..+++....|
T Consensus 356 Cgpep~l--------~~~l~~~~e~~e~~i 377 (455)
T PLN02372 356 CGPEPPL--------LERLEKDVEEGEKTI 377 (455)
T ss_pred CCCCchH--------HHHHHHHHHHHHHHH
Confidence 4666664 555555555544443
No 133
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.65 E-value=1.5e+03 Score=28.19 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--hh-hhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASH--HQ-DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA 106 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~--y~-~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~ 106 (790)
.+..+|..|+.++.+.|.++...-..+ .. -.......+..+..+-..|.++|+.+|.+ . ...++|+++
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r------E---~rll~dyse 101 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR------E---ARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---HHHhhhhHH
Confidence 566677777777777766665433211 11 12233455777888889999999987765 1 122233332
Q ss_pred H-------HH--------HHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Q 003864 107 K-------MK--------EARV---KKELLELVRAIVEIGERLKGVKEA--LRDGRLRFAAEELR 151 (790)
Q Consensus 107 ~-------~~--------el~~---~~~~l~~l~~l~~i~~~L~~~~~~--l~~~~l~~A~~~L~ 151 (790)
+ .+ |++| +-.+..+-+.+..++..+.++-.. +.++++.+|++.|+
T Consensus 102 lEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~ 166 (717)
T PF09730_consen 102 LEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLK 166 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12 2222 223333444555666666666544 67788888888887
No 134
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.43 E-value=3.8e+02 Score=27.20 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=6.5
Q ss_pred HHHhHHHHHHhHHHH
Q 003864 70 TVSRTDEISTDLSDI 84 (790)
Q Consensus 70 l~~~~~~l~~~i~~l 84 (790)
++.+.+.+..+|..|
T Consensus 118 lv~r~K~v~~s~~tL 132 (217)
T KOG4515|consen 118 LVARCKSVEASMITL 132 (217)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 135
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.73 E-value=1.4e+03 Score=27.05 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003864 146 AAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVR 197 (790)
Q Consensus 146 A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~w~~lv~ 197 (790)
..+.+.+.....+... ..+..+.+.++.....|+....+..+++.-..+.
T Consensus 105 ~~~~~~k~~~~~~~~~--~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 105 LLELLKKKIFFSKDQS--FKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred HHHHHHHHHHHHhhcc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444443333 4678888889999999999888888887755443
No 136
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=21.45 E-value=2.4e+02 Score=33.76 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhhhhhh
Q 003864 49 VQSYIASHHQDFASLF 64 (790)
Q Consensus 49 v~~~i~~~y~~f~~~~ 64 (790)
+...|...|..|...+
T Consensus 109 l~~~L~~ff~s~q~la 124 (552)
T COG1256 109 LSTLLNDFFNSLQELA 124 (552)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 137
>PRK02224 chromosome segregation protein; Provisional
Probab=21.34 E-value=1.7e+03 Score=27.99 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQ 50 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~ 50 (790)
++...+.++..+++++..++.
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666664
No 138
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.30 E-value=7.1e+02 Score=23.58 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=17.5
Q ss_pred hhhHHHhHHHHHHhHHHHHhhhcc
Q 003864 67 CNDTVSRTDEISTDLSDILGLISY 90 (790)
Q Consensus 67 ~~dl~~~~~~l~~~i~~l~~~i~~ 90 (790)
..+..+...+|..+|+.+...|.+
T Consensus 28 ~ld~~~~l~kL~~~i~eld~~i~~ 51 (132)
T PF10392_consen 28 ELDISTPLKKLNFDIQELDKRIRS 51 (132)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 666788888888888876666544
No 139
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.96 E-value=1.6e+03 Score=27.51 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 003864 135 KEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFE 182 (790)
Q Consensus 135 ~~~l~~~~l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~ 182 (790)
++..-+|++..|+..|+.+...|...+.+ .-..+-+.|......|++
T Consensus 432 q~L~l~~dv~~A~~~L~~AD~~La~~~~P-~l~~lR~Ala~Di~~L~~ 478 (656)
T PRK06975 432 QQLQLTGNVQLALIALQNADARLATSDSP-QAVAVRKAIAQDIERLKA 478 (656)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHhc
Confidence 45577899999999999999999888754 667777888888887763
No 140
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.79 E-value=4.8e+02 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003864 32 RLLISRLEFHSLQIKSKV 49 (790)
Q Consensus 32 ~~~i~~l~~~~~e~k~~v 49 (790)
+..|..+..++..+++.|
T Consensus 10 r~dIk~vd~KVdaLq~~V 27 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQV 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555444444
No 141
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.78 E-value=1.9e+03 Score=28.45 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhc
Q 003864 10 VRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLIS 89 (790)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~ 89 (790)
+-++...+++.|+--. +++.....+.++..++|.++.+.-+ ....+-..++.+.+.|.+++....
T Consensus 325 i~~~~~e~~~~d~Ei~----~~r~~~~~~~re~~~~~~~~~~~~n-----------~i~~~k~~~d~l~k~I~~~~~~~~ 389 (1074)
T KOG0250|consen 325 IGELKDEVDAQDEEIE----EARKDLDDLRREVNDLKEEIREIEN-----------SIRKLKKEVDRLEKQIADLEKQTN 389 (1074)
T ss_pred HHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHhhcCCCCCCh
Q 003864 90 YRPIDKEVKEIIDEVSAKMKEARVKKELLELVRA-IVEIGERLKGVKEAL--RDGRLRFAAEELRELKKDLRVGDENASE 166 (790)
Q Consensus 90 ~~~~~~~l~~~v~~~~~~~~el~~~~~~l~~l~~-l~~i~~~L~~~~~~l--~~~~l~~A~~~L~~l~~~l~~~~~~~~~ 166 (790)
+ ..+..+.+.=.+.+.+++|++..+..+..|+. +..+.+.+.+.++.. -++.+.+-....+.-...|+.+... ++
T Consensus 390 ~-~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~-k~ 467 (1074)
T KOG0250|consen 390 N-ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT-KT 467 (1074)
T ss_pred h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003864 167 PLVYGLLRKEWLVCFEEIQEL 187 (790)
Q Consensus 167 ~~I~~~L~~~~~~l~~~i~~~ 187 (790)
..|.. .+...-++...|...
T Consensus 468 dkvs~-FG~~m~~lL~~I~r~ 487 (1074)
T KOG0250|consen 468 DKVSA-FGPNMPQLLRAIERR 487 (1074)
T ss_pred chhhh-cchhhHHHHHHHHHH
No 142
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.76 E-value=4.3e+02 Score=26.68 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=21.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIA 54 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~ 54 (790)
+++++...|+.|...+.+.+.+|...+.
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~ 131 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALIN 131 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888876664
No 143
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.68 E-value=9e+02 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003864 32 RLLISRLEFHSLQIKSKVQ 50 (790)
Q Consensus 32 ~~~i~~l~~~~~e~k~~v~ 50 (790)
-.++..|++|+..+..-|=
T Consensus 208 la~~a~LE~RL~~LE~~lG 226 (388)
T PF04912_consen 208 LARAADLEKRLARLESALG 226 (388)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4566666666666665443
No 144
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=20.59 E-value=6.2e+02 Score=23.52 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhc
Q 003864 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLIS 89 (790)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~ 89 (790)
+......|..++.+++.++...-.+.-..=.+...+..+++.++..|...+..+++.|+
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455566666666666666333322222222234455555555555555555544443
No 145
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.53 E-value=1.2e+03 Score=29.93 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred hhhhhhhcCCCC-CCCCCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhhhhhhhhHHHhHH
Q 003864 9 NVRDLLSTHDLT-DQTAPLTA--PDLRLLISRLEFHSLQIKSKVQSYIAS----------HHQDFASLFSLCNDTVSRTD 75 (790)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~l~~--~dl~~~i~~l~~~~~e~k~~v~~~i~~----------~y~~f~~~~~~~~dl~~~~~ 75 (790)
++|+|.-.---+ |.--+|+. .++..+++.+.+...+...+++.-..+ .+.+--..-..+.....++.
T Consensus 263 ~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~ 342 (1072)
T KOG0979|consen 263 ELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIE 342 (1072)
T ss_pred HHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544433222 44444544 577777777777777766666544333 34444444555666777777
Q ss_pred HHHHhHHHHHhhhccCccchhHHHHHHHHHH
Q 003864 76 EISTDLSDILGLISYRPIDKEVKEIIDEVSA 106 (790)
Q Consensus 76 ~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~ 106 (790)
+..++|.+++..+++.+.+.......+++..
T Consensus 343 ~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~ 373 (1072)
T KOG0979|consen 343 KAKKMILDAQAELQETEDPENPVEEDQEIMK 373 (1072)
T ss_pred HHHHHHHHHHhhhhhcCCccccchhHHHHHH
Confidence 7778888877777666666665555555443
No 146
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.45 E-value=1e+03 Score=25.24 Aligned_cols=116 Identities=10% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH------Hhhhhhhhhhhhh----hhhHHHhHHHHHHhHHHHHhhhccC
Q 003864 22 QTAPLTAPDLRLLISRLEFHSLQIKSKVQSYI------ASHHQDFASLFSL----CNDTVSRTDEISTDLSDILGLISYR 91 (790)
Q Consensus 22 ~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i------~~~y~~f~~~~~~----~~dl~~~~~~l~~~i~~l~~~i~~~ 91 (790)
+++|-.=.+++..+++|+..+..+..-++-.+ ...+.+|.+.+.. =.++..-..++...++.....
T Consensus 50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~---- 125 (243)
T cd07666 50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKA---- 125 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH----
Confidence 44554555777777777777666655444222 4555667777655 222444445555555421111
Q ss_pred ccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 003864 92 PIDKEVKEIIDEVSAK-MKEARVKKELLELVRAIVEIGERLKGVKEALRDGR 142 (790)
Q Consensus 92 ~~~~~l~~~v~~~~~~-~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~ 142 (790)
....+...-+++..- +..+.+..++..++..=..+..-+....+++..++
T Consensus 126 -~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~ 176 (243)
T cd07666 126 -TDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKK 176 (243)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111122222222 33445566666666555555666666655555543
No 147
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=20.38 E-value=3.1e+02 Score=33.38 Aligned_cols=7 Identities=14% Similarity=-0.173 Sum_probs=3.3
Q ss_pred CCeEEEE
Q 003864 202 SNRVLVK 208 (790)
Q Consensus 202 ~~~i~v~ 208 (790)
.+.+.|.
T Consensus 217 ~G~~~V~ 223 (624)
T PRK12714 217 GGFMNVF 223 (624)
T ss_pred CCcEEEE
Confidence 3555544
No 148
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.37 E-value=1e+03 Score=25.19 Aligned_cols=74 Identities=7% Similarity=0.061 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh----hhh-hhhhhhhHHHhHHHHHHhHHHHHhhhccC---ccchhHHHHHHHHH
Q 003864 34 LISRLEFHSLQIKSKVQSYIASHHQD----FAS-LFSLCNDTVSRTDEISTDLSDILGLISYR---PIDKEVKEIIDEVS 105 (790)
Q Consensus 34 ~i~~l~~~~~e~k~~v~~~i~~~y~~----f~~-~~~~~~dl~~~~~~l~~~i~~l~~~i~~~---~~~~~l~~~v~~~~ 105 (790)
..++...++.+.|.+--..|.++|-+ |+. .+..+...-..++.-+=++|..+..+..+ +...+.+..++.++
T Consensus 111 ~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aE 190 (242)
T cd07600 111 KYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAE 190 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHH
Confidence 34566777888888888888866653 222 23344445555555555566666666442 23344555565555
Q ss_pred HH
Q 003864 106 AK 107 (790)
Q Consensus 106 ~~ 107 (790)
.+
T Consensus 191 de 192 (242)
T cd07600 191 DE 192 (242)
T ss_pred HH
Confidence 43
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.15 E-value=8.5e+02 Score=24.26 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQS 51 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~ 51 (790)
++...++....+..++..++..
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHH
Confidence 3444666666666666666654
No 150
>PHA03247 large tegument protein UL36; Provisional
Probab=20.11 E-value=1.9e+03 Score=31.64 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcCCCC-------------CChhhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhc
Q 003864 144 RFAAEELRELKKDLRVGDEN-------------ASEPLVYGLLRKEWLVCFEEIQE---LLVKFVESAVR 197 (790)
Q Consensus 144 ~~A~~~L~~l~~~l~~~~~~-------------~~~~~I~~~L~~~~~~l~~~i~~---~L~~~w~~lv~ 197 (790)
+.|+++|++++..++.=+.. .+-...+..|+.+...||.++.. ..++.|.+.++
T Consensus 1667 vqAVeWL~qAr~IiDsHpLT~~~~d~~GPm~~yaeRidaL~~lR~~ld~Lrr~le~AEaaWDeaW~~F~r 1736 (3151)
T PHA03247 1667 VAAVDWLEHARRVFEAHPLTAARGGGPDPLARLHARLDALGETRRRTEALRRSLEAAEAEWDEVWGRFGR 1736 (3151)
T ss_pred HHHHHHHHHHHHHhccCCcceeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999875421 11223345578888888888853 36677776654
No 151
>PF14164 YqzH: YqzH-like protein
Probab=20.08 E-value=1.2e+02 Score=25.51 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=25.4
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 003864 19 LTDQTAPLTAPDLRLLISRLEFHSLQIK-SKVQSYIA 54 (790)
Q Consensus 19 ~~~~~~~l~~~dl~~~i~~l~~~~~e~k-~~v~~~i~ 54 (790)
-++.+.|||++|.+.++.++..+..+-. .++++.+.
T Consensus 19 ~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVe 55 (64)
T PF14164_consen 19 YDVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVE 55 (64)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 3468899999999988888876665433 35555554
Done!