Query 003864
Match_columns 790
No_of_seqs 162 out of 205
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8p_C DSL1, KLLA0C02695P; int 99.9 1.4E-27 4.7E-32 250.9 17.5 247 450-751 95-345 (357)
2 2fji_1 Exocyst complex compone 96.4 0.63 2.1E-05 51.3 25.3 268 450-739 52-350 (399)
3 3hr0_A COG4; conserved oligome 96.1 0.26 8.9E-06 51.3 18.7 175 544-738 68-248 (263)
4 2d2s_A Exocyst complex compone 92.7 4.8 0.00016 40.9 17.7 102 122-243 13-116 (235)
5 3etv_A Protein transport prote 92.1 6.3 0.00022 41.9 17.8 226 100-335 50-305 (355)
6 3swh_A MUNC13-1, protein UNC-1 84.3 48 0.0016 35.5 21.2 292 384-716 8-333 (341)
7 3csx_A Putative uncharacterize 75.8 9.5 0.00032 32.1 7.4 65 21-85 10-77 (81)
8 2pih_A Protein YMCA; regulate 68.7 53 0.0018 30.8 12.0 97 99-202 24-123 (151)
9 2l5g_B Putative uncharacterize 64.4 7.9 0.00027 28.3 3.9 26 26-51 2-27 (42)
10 2js5_A Uncharacterized protein 61.6 37 0.0013 27.8 7.9 58 27-84 4-64 (71)
11 3ghg_A Fibrinogen alpha chain; 56.4 63 0.0022 36.2 11.2 14 39-52 63-76 (562)
12 2v66_B Nuclear distribution pr 55.6 95 0.0032 27.7 10.3 31 30-60 7-37 (111)
13 3ghg_A Fibrinogen alpha chain; 52.8 70 0.0024 35.9 10.8 16 30-45 61-76 (562)
14 3na7_A HP0958; flagellar bioge 40.5 2.5E+02 0.0086 28.3 12.5 108 29-140 49-157 (256)
15 1deq_A Fibrinogen (alpha chain 39.4 2.1E+02 0.0073 30.7 11.7 40 16-55 27-82 (390)
16 3oja_B Anopheles plasmodium-re 37.6 3.3E+02 0.011 30.6 14.2 6 175-180 565-570 (597)
17 3ol1_A Vimentin; structural ge 35.0 2.4E+02 0.0084 25.1 10.0 78 30-119 24-107 (119)
18 2vyw_A Hemoglobin; trematode, 33.7 2.6E+02 0.0088 25.5 10.3 82 24-108 1-99 (148)
19 1go4_E MAD1 (mitotic arrest de 33.4 27 0.00093 30.6 3.1 30 21-50 4-36 (100)
20 3swf_A CGMP-gated cation chann 32.6 1.3E+02 0.0044 24.8 6.7 48 28-76 2-50 (74)
21 1deq_A Fibrinogen (alpha chain 31.0 5.1E+02 0.017 27.8 12.9 18 30-47 64-81 (390)
22 1hlm_A Hemoglobin (cyano Met); 30.1 2.4E+02 0.0082 25.8 9.6 54 16-69 3-59 (159)
23 1hlb_A Hemoglobin (deoxy); oxy 29.4 1.8E+02 0.0062 26.7 8.5 92 15-110 2-107 (158)
24 2d4y_A HAP1, flagellar HOOK-as 28.7 1.4E+02 0.0048 33.0 8.9 8 202-209 158-165 (463)
25 3i00_A HIP-I, huntingtin-inter 28.6 2.9E+02 0.0099 24.8 9.2 27 28-54 10-36 (120)
26 3pt8_B Hemoglobin III; oxygen 25.3 3.6E+02 0.012 24.3 9.8 44 23-66 1-47 (152)
27 1p9i_A Cortexillin I/GCN4 hybr 25.0 1.2E+02 0.0041 19.9 4.2 27 29-55 2-28 (31)
28 4dvy_P Cytotoxicity-associated 24.3 8E+02 0.027 27.6 13.7 76 76-154 739-819 (876)
29 2v71_A Nuclear distribution pr 23.3 4.8E+02 0.017 25.3 10.3 18 69-86 85-102 (189)
30 1jcd_A Major outer membrane li 23.2 1.2E+02 0.0039 23.4 4.6 17 70-86 9-25 (52)
31 1it2_A Hemoglobin; hagfish, de 22.3 4.3E+02 0.015 23.8 10.5 85 21-108 6-103 (146)
32 3vkg_A Dynein heavy chain, cyt 21.4 6.7E+02 0.023 34.9 14.4 148 27-196 1956-2108(3245)
33 3fxd_A Protein ICMQ; helix bun 20.4 2.6E+02 0.0089 21.7 6.0 43 145-189 9-51 (57)
No 1
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=99.95 E-value=1.4e-27 Score=250.94 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=173.0
Q ss_pred ceeecccHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHH-HHHHhhhhhhHHhhccccceeeeeecchHHHHHHHh
Q 003864 450 RCVVTKAASQLMKLVHQILQDICL-SSTRVAFEFYHAARDAIL-LYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEIL 527 (790)
Q Consensus 450 ~c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~~~~~~il~-LyralvP~~h~~~l~s~p~~a~l~yNDC~YLA~~L~ 527 (790)
...||+.|+.+..++......+.. +...+. +-|..-.+++. .|-|+.-.+| .+- -.||||--|+-.+=.
T Consensus 95 ~i~vt~lp~~f~~i~~~f~~~~~~~~~~~~~-~~~~yK~NlLqT~f~am~~~~~-~~W-------wqly~D~ryi~~~~~ 165 (357)
T 3k8p_C 95 PIQVSVFVQSAAKVFTEFEQGCDTIGRSKVE-SIYLYKFNLLQTAFFAMVSEKV-NDW-------TQLYKDVRYLYTENP 165 (357)
T ss_dssp CEEEETHHHHHHHHHHHHHHHHHTTTTTSSH-HHHHHHHHHHHHHHHHHHHHHC-SCH-------HHHHHHHHHHHHHCT
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHhh-hHH-------HHHHHHHHHHHhcCh
Confidence 389999999999999999988753 223333 55555555554 4888887777 332 789999999977611
Q ss_pred hhhhhhccCCCcchhhH-hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhhhHHHHHHHHHHHH
Q 003864 528 GFAFEYHSDFPSSIKEH-AVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFIL 606 (790)
Q Consensus 528 ~l~~~~~~~lp~~l~~~-~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~a~gf~~~~~~~~~e~~e~av~q~l~~L 606 (790)
.+. .++++ .+|.+.--..++ ...-+-|+.| |.++-+...+=+. .. .+++ -|
T Consensus 166 ~l~---------rl~EL~~~~le~~l~~~~---k~v~~lv~~q---L~~l~~nE~~p~W-------~~---t~~~---Ll 217 (357)
T 3k8p_C 166 KLL---------QLMELNSRRLDLNLNLIK---KTIYKLVNDQ---LQELKDNERTPDW-------DI---TISS---LL 217 (357)
T ss_dssp TCH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHTSSSCCC-------HH---HHHT---HH
T ss_pred hhH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHhccCCCCH-------HH---HHHH---HH
Confidence 111 02232 244443322211 1112222222 3333333332222 11 1121 23
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcCCCCCCC
Q 003864 607 EKVHIIWEPLLLPSTYNRSMCTVLESVF-SRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGD 685 (790)
Q Consensus 607 ~~L~~~W~~vLp~svy~~~ig~Lv~~v~-~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~e~ 685 (790)
--+.+.|.+.|.+....+.++.|+++++ ++||++|++++|||+++|++|+.||+.+ .++.++ |..
T Consensus 218 P~i~~~i~~pl~k~~~~~~l~~lvnfi~~~~II~dIl~LeDISE~eS~~La~Li~~l-~~l~~l--P~l----------- 283 (357)
T 3k8p_C 218 PYLKKTALPTLYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLL-LSGLEI--PRL----------- 283 (357)
T ss_dssp HHHHHTHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHTSSCCCHHHHHHHHHHHHHH-HHHTCC--GGG-----------
T ss_pred HHHHHHhhhHhhcchHHHHHHHHHHHHHhhHHHHHHcCcccCCHHHHHHHHHHHHHH-HcCCCC--ccc-----------
Confidence 3445566666666778899999999999 9999999999999999999999999998 444444 321
Q ss_pred CccchhccccchHhHHHHHHHhcCChhhHHHHhhcCCcccCCCCHHHHHHHHHhhccccccccccc
Q 003864 686 FARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEVQCNLFSRYFCWVLNSCYV 751 (790)
Q Consensus 686 ~~~~~~~~vpsW~Kf~~L~~iL~asL~dI~~~W~~G~ll~~~Fs~~Ev~~LIkAlF~~~~~~~~~~ 751 (790)
..+++|||+|+||+||++||++||+||++||++|++ + +|+++||++||||+|+++++|.+++
T Consensus 284 --~~i~~Yv~~W~Kf~~L~~IL~ssLkDI~~lW~eGeL-~-~FstdEVv~LIrALFaDT~~Rr~aI 345 (357)
T 3k8p_C 284 --NLIETYRHSREKLGILSKILTAHLKDILEMFYEGEF-F-LFETDEIVQWIILLFADTPTRRDCI 345 (357)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTGG-G-GSCHHHHHHHHHHHSCCCHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCc-c-eecHHHHHHHHHHHCcCCHHHHHHH
Confidence 135799999999999999999999999999999998 4 9999999999999999999999875
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.63 Score=51.30 Aligned_cols=268 Identities=10% Similarity=0.104 Sum_probs=163.3
Q ss_pred ceeecccHHHHHHHHHHHHHhhhhcchH-HHHH----HHHHHHHHHHHHHHhhhhhhHHhh-------c---------cc
Q 003864 450 RCVVTKAASQLMKLVHQILQDICLSSTR-VAFE----FYHAARDAILLYEAIVPVKLERQL-------E---------GI 508 (790)
Q Consensus 450 ~c~IS~~~~~l~~Li~~~L~ea~~ss~~-~a~~----L~~~~~~il~LyralvP~~h~~~l-------~---------s~ 508 (790)
-+.+|..|..+..++.+.+.-|..++.. +..+ .+..-......|+..+-.+..+.+ . +.
T Consensus 52 g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (399)
T 2fji_1 52 GLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDEC 131 (399)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCC
T ss_pred CCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccc
Confidence 5779999999999999999988654422 2222 222222223334333322222111 0 00
Q ss_pred -c---ceeeeeecchHHHHHHHhhhhhhhccCCCcchh-h-HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 003864 509 -N---QVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIK-E-HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADG 582 (790)
Q Consensus 509 -p---~~a~l~yNDC~YLA~~L~~l~~~~~~~lp~~l~-~-~~~fvd~~~~fr~~ae~~~q~qi~~~~~~L~e~L~~a~g 582 (790)
| ....-+-|||+..+.....+...|.....+... + ...|-++...|..++..+.+.-++.....|+..++..
T Consensus 132 ~~~~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~l-- 209 (399)
T 2fji_1 132 PGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEI-- 209 (399)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTT--
T ss_pred cccHHHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 1 111345699999999888888777754443222 1 2356677778888888877776665555566665442
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHH
Q 003864 583 FQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMA---AEETLQLQRLI 659 (790)
Q Consensus 583 f~~~~~~~~~e~~e~av~q~l~~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~Il~l~DIs---~~es~~L~~l~ 659 (790)
|.. .=++. .++++.+..++.....-++.|.++.|...+..+.+.++.+.+..++.-.-+. ..-+.++..=+
T Consensus 210 ft~----~W~~~--~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~ 283 (399)
T 2fji_1 210 FSK----TWYMG--SQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDF 283 (399)
T ss_dssp TSG----GGTTC--CHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHH
T ss_pred CCc----hhcCC--cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Confidence 221 11111 1778888888888887779999999999999999999999999999722455 55555554433
Q ss_pred HHHHHHhhhhhhhhHhhhcCCCCCCCCccchhccccchHhHHHHHHHhcC-ChhhHHHHhhcCCcccCCCCHHHHHHHHH
Q 003864 660 HLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWESGELLSCGFTLSEVQCNLF 738 (790)
Q Consensus 660 ~~~~~~l~~LF~~~~~~~~~~~~~e~~~~~~~~~vpsW~Kf~~L~~iL~a-sL~dI~~~W~~G~ll~~~Fs~~Ev~~LIk 738 (790)
+.+..+|..... + .. ..+.--...|..+..|.+ |.. +...|..-|..=...-=+++.++|..++.
T Consensus 284 ----~~l~~~f~~~~~----~----~~-~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~ 349 (399)
T 2fji_1 284 ----EIFYQLFVKVLD----G----NE-SKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILK 349 (399)
T ss_dssp ----HHHHHHHHHHTT----T----CT-THHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHT
T ss_pred ----HHHHHHHHHhcc----c----cc-hhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445677765421 0 00 000001357888899999 875 34677777743321011566777666664
Q ss_pred h
Q 003864 739 S 739 (790)
Q Consensus 739 A 739 (790)
.
T Consensus 350 ~ 350 (399)
T 2fji_1 350 C 350 (399)
T ss_dssp T
T ss_pred h
Confidence 3
No 3
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=96.13 E-value=0.26 Score=51.28 Aligned_cols=175 Identities=14% Similarity=0.206 Sum_probs=116.2
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCcchhhhhhhHH---HHHHHHHHHHHHHHhhcccCCCh
Q 003864 544 HAVFADMAPRFHLMAEEILQRQI-QIVIFNLREALDGADGFQNTHQIQQFESAK---FSIEQVVFILEKVHIIWEPLLLP 619 (790)
Q Consensus 544 ~~~fvd~~~~fr~~ae~~~q~qi-~~~~~~L~e~L~~a~gf~~~~~~~~~e~~e---~av~q~l~~L~~L~~~W~~vLp~ 619 (790)
+..|.+...+|+++-...++.-. +..+-.|+.+|+...+-+..-.++.++..+ -.+.+.+..++.+=..|+++|.+
T Consensus 68 l~~l~~~~~k~~~ll~~gi~~Lf~~~ikprLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~ 147 (263)
T 3hr0_A 68 LSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSP 147 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcCh
Confidence 34455555556666554443332 223334666664332222211112233322 12788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcCCCCCCCCccchhccccchHh
Q 003864 620 STYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCK 699 (790)
Q Consensus 620 svy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~e~~~~~~~~~vpsW~K 699 (790)
+.|.+.++.+++.++..+=..|+. .-+++-=|.+|-.=++.+++.+.+. +. ...=....|
T Consensus 148 ~~y~~Ll~~~~~~la~~lE~~i~~-~~fn~lGal~LdrDvr~li~~~~~~----------~~---------~~lRekF~R 207 (263)
T 3hr0_A 148 VIYDSLTGLMTSLVAVELEKVVLK-STFNRLGGLQFDKELRSLIAYLTTV----------TT---------WTIRDKFAR 207 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHHHHHHHTT----------SC---------TTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCcCchhHHHHHHHHHHHHHHHHhc----------cc---------hhhhHHHHH
Confidence 999999999999988888777777 5699999988877777664443111 10 011267789
Q ss_pred HHHHHHHhcC-ChhhHHHHhhcCC-cccCCCCHHHHHHHHH
Q 003864 700 FRKLAELLDM-PLRSITAAWESGE-LLSCGFTLSEVQCNLF 738 (790)
Q Consensus 700 f~~L~~iL~a-sL~dI~~~W~~G~-ll~~~Fs~~Ev~~LIk 738 (790)
+.++..||+. +..|+.+.|.++. .+.-.+|++|++....
T Consensus 208 L~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~il~ 248 (263)
T 3hr0_A 208 LSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLA 248 (263)
T ss_dssp HHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHHHHH
Confidence 9999999998 8999999897632 3355899999998653
No 4
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=92.68 E-value=4.8 Score=40.95 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 003864 122 RAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDEN--ASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFE 199 (790)
Q Consensus 122 ~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~--~~~~~I~~~L~~~~~~l~~~i~~~L~~~w~~lv~~~ 199 (790)
+.++.+...+++.+-.+.+.++.+|+..+++.+..+...+.. ..+......++.++.+.+..+.++|.+.... .
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~-- 88 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--S-- 88 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--C--
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--
Confidence 457788889999999999999999999999999999887631 1456778889999999999999999776532 1
Q ss_pred cCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHHHHH
Q 003864 200 KESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVAD 243 (790)
Q Consensus 200 ~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~ 243 (790)
. .+..+...+.+|-+||.-+....-|-+
T Consensus 89 ~----------------~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 N----------------EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp S----------------SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C----------------CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 0 134678899999999998776555544
No 5
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=92.08 E-value=6.3 Score=41.91 Aligned_cols=226 Identities=14% Similarity=0.113 Sum_probs=112.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC-CCCChhhHHHHHHHHH
Q 003864 100 IIDEVSAK-MKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD-ENASEPLVYGLLRKEW 177 (790)
Q Consensus 100 ~v~~~~~~-~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~-~~~~~~~I~~~L~~~~ 177 (790)
...++++. +|+-.-.+++ ..+..++.+...+.+++.-++--++..+--.|+.+++.++..+ .....-+-=+.+..-+
T Consensus 50 ~~~d~e~llkre~~Lt~EL-~~l~~LK~Vs~Li~EfktN~ellElENCyYSLqnLrKKl~~n~~~~kqs~~FQqSvatYV 128 (355)
T 3etv_A 50 GGSDSSDLLQREAILANEL-NILDNLKTFLNLIKEVKTNLNILELENCYYSLQSLRKKMRNNAAYLKQSFNFQQSISTYV 128 (355)
T ss_dssp --------CTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHhccchhhhhHHHHH
Confidence 33444444 3444444554 5788899999999999999999999999999999999997652 1112222223333334
Q ss_pred HHHHHHHHHHHHHHHh-hhhccccCCCeEEEEEEe--ecCCCCcccHHHHHHHHHH-------------------hhhhh
Q 003864 178 LVCFEEIQELLVKFVE-SAVRFEKESNRVLVKYQL--TVDGLDGIELRTVLEAMEV-------------------VGILD 235 (790)
Q Consensus 178 ~~l~~~i~~~L~~~w~-~lv~~~~~~~~i~v~~~i--~~~~~~~~~L~~vl~AL~~-------------------lg~l~ 235 (790)
..|+-.+...+.+.-. ..++ -++++++.+-.+ ..++. .....+.+.-+.. +|.+.
T Consensus 129 DsLHl~Lv~kl~~ilt~~FW~--I~~~si~F~~~I~~g~D~v-~~~Yd~f~~f~~~~~fp~~~lD~~~WfI~dm~l~d~q 205 (355)
T 3etv_A 129 DTLHLELVSTLYKILTNGFWK--ITENSIQFTPTVEWGKDKV-HIEYDTFMDFVAQQYFPKGSLDNQAWFILDMTSADSQ 205 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTTEE--ECSSEEEECSEEEETTTTE-EEEHHHHHHHHHHHHCGGGSCCTTSHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhee--ecCCeEEEccceeecCcce-eeecHHHHHHHHHhcCCCCCCCcccceeeecccchHH
Confidence 4444444444333333 1222 334444433333 22221 1222333332222 33344
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCccccc-ccCCCCcc--cc--cceEEeeccCCccccCCChhHHHHHHHHHHHHHHHH
Q 003864 236 YGLAKVADLKIKYVISPAVSYGSPITFVE-ELNPGPEK--MS--EAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKR 310 (790)
Q Consensus 236 ~~l~~l~~~L~~~il~Pli~~~~~~~~v~-~~~~~~~~--~~--~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL~~~ 310 (790)
..+.. .++.|+.-.|.-......+. .+-.++.. .+ ...|.+..+ ...+...+.+...+...+..|+...
T Consensus 206 e~Vr~----kL~~I~~~Yi~l~~v~~~iK~~iF~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~Sf~~l~~Fl~~~ 279 (355)
T 3etv_A 206 EQVRA----KLNTIMKEYMNLSRIVSMIKNSIFISGKEISYENEKNILVFSKS--SSHGQHCVSTVLTSFEAVCDFMLDG 279 (355)
T ss_dssp HHHHH----HHHHHHHHHTSCHHHHHHHHHHTTCTTEEEEEETTTTEEEEEEC--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCceEEeecc--cccccccHHHHHHHHHHHHHHHHhh
Confidence 43333 33333333332221110000 00000000 00 124443222 1113346778899999999999999
Q ss_pred cccCC-CchHHHhhhhhhHHHHHHHH
Q 003864 311 ICLQN-GSWVRCFGRLTWPRISELII 335 (790)
Q Consensus 311 L~~~n-~~l~~~lg~~i~~~ls~~lI 335 (790)
+...+ ..++..||..+..++...+=
T Consensus 280 ls~~d~~~l~~~LG~~i~tE~~K~vK 305 (355)
T 3etv_A 280 LAFRDRKTLSYELGPLFNTEFTKFVK 305 (355)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHhhhHHHHHHHHHHH
Confidence 87533 45778888888777775443
No 6
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=84.25 E-value=48 Score=35.47 Aligned_cols=292 Identities=11% Similarity=0.142 Sum_probs=150.4
Q ss_pred hhHHHhHHHHHHHHHhHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccceeecccHHHHHHH
Q 003864 384 SNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKL 463 (790)
Q Consensus 384 ~~~v~~v~~~f~~krr~~~L~~aR~l~~~~d~~~~~~~~~~~~wg~~~~~~~~~~~~~~~~~~~~e~c~IS~~~~~l~~L 463 (790)
..|-...-.+|+.....+.++.++..+..|.|+..... + +.-+=|.++-.+...
T Consensus 8 ~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~----------------~----------~~~~hSsSvvDif~~ 61 (341)
T 3swh_A 8 PAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQT----------------S----------EHALFSCSVVDVFSQ 61 (341)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS----------------S----------SSCCSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc----------------c----------cCccccchHHHHHHH
Confidence 34445555678888888888888887775444221100 0 122457788888888
Q ss_pred HHHHHHhhhh--cchH-----HHHHHHHHHHHHHHHHHHhhhhhhHHhhccc-cceeeeeecchHHHHHHHhhhhhhhc-
Q 003864 464 VHQILQDICL--SSTR-----VAFEFYHAARDAILLYEAIVPVKLERQLEGI-NQVAVLMHNDCLYLSQEILGFAFEYH- 534 (790)
Q Consensus 464 i~~~L~ea~~--ss~~-----~a~~L~~~~~~il~LyralvP~~h~~~l~s~-p~~a~l~yNDC~YLA~~L~~l~~~~~- 534 (790)
++++..--.. -+++ .-.+|...+..++..|..++-.........- ....++.-||..|+-..|..+..+..
T Consensus 62 ~~Q~~~~~~~L~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~ 141 (341)
T 3swh_A 62 LNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGG 141 (341)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHHHHHHhcch
Confidence 8888775532 1111 1123445555666666666543333222111 12247777999999999988876543
Q ss_pred cCCCcchhhHhhHhhhhHHHH----HHH---HHHHHHHHHHHHHHHHHHhccCCC---CCCcchhhhhhhHHHHHHHHHH
Q 003864 535 SDFPSSIKEHAVFADMAPRFH----LMA---EEILQRQIQIVIFNLREALDGADG---FQNTHQIQQFESAKFSIEQVVF 604 (790)
Q Consensus 535 ~~lp~~l~~~~~fvd~~~~fr----~~a---e~~~q~qi~~~~~~L~e~L~~a~g---f~~~~~~~~~e~~e~av~q~l~ 604 (790)
..+.+.... ..-++-..++ .+. ...++..|+.+...+...|....| ++..........++.+++-.++
T Consensus 142 ~~l~~~~~~--~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~ 219 (341)
T 3swh_A 142 KELDAEASG--TLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMD 219 (341)
T ss_dssp TTSCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHH
Confidence 122222111 1111111111 111 123455555555555554433322 2211000112334678888888
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHhh---------------cCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 003864 605 ILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDIL---------------LLDDMAAEETLQLQRLIHLMLENLSSL 669 (790)
Q Consensus 605 ~L~~L~~~W~~vLp~svy~~~ig~Lv~~v~~~ii~~Il---------------~l~DIs~~es~~L~~l~~~~~~~l~~L 669 (790)
.|..==......|...++.+.+..|-..++..+..-|. .-.+.+..++..|...+ +.+.+.
T Consensus 220 yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L----~~L~~f 295 (341)
T 3swh_A 220 LLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELAL----DTIKQY 295 (341)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHHH----HHHHHH
Confidence 88776667778899999999999999999887766551 12234555555555544 555788
Q ss_pred hhhhHhhhcCCCCCCCCccchhccccchHhHHHHHHHhcCChhhHHH
Q 003864 670 LESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITA 716 (790)
Q Consensus 670 F~~~~~~~~~~~~~e~~~~~~~~~vpsW~Kf~~L~~iL~asL~dI~~ 716 (790)
|... |.|- +...+ ..-|.|.++++...+-..+=.+.-+
T Consensus 296 FhA~----G~GL----~~~~L-eks~~~~~l~~~L~L~~~~T~~LI~ 333 (341)
T 3swh_A 296 FHAG----GVGL----KKTFL-EKSPDLQSLRYALSLYTQATDLLIK 333 (341)
T ss_dssp HHGG----GTSC----CHHHH-HTCHHHHHHHHHHHHC---------
T ss_pred hccC----CCCC----CHHHH-ccChhHHHHHHHHHHhcCCHHHHHH
Confidence 8532 4441 10011 1235677777777665554333333
No 7
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=75.81 E-value=9.5 Score=32.06 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---hhhhhHHHhHHHHHHhHHHHH
Q 003864 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLF---SLCNDTVSRTDEISTDLSDIL 85 (790)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~---~~~~dl~~~~~~l~~~i~~l~ 85 (790)
+.++|=+-+.|.+.|.+|.++..+.|+++|+...-=..+|..+. +.+-+.....++....+..+.
T Consensus 10 ~~~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 10 NNPTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567789999999999999999999998887555555554 555555566666666655443
No 8
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=68.73 E-value=53 Score=30.75 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 003864 99 EIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR---LRFAAEELRELKKDLRVGDENASEPLVYGLLRK 175 (790)
Q Consensus 99 ~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~---l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~ 175 (790)
+.+.++.+.++.++.+..+..+++..+.....+...+. .|+ +.+....+++++..++..+ .-.-|..-..
T Consensus 24 eeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~---~Gk~~~~~e~~~el~~l~~~l~~np----~V~~y~~Ae~ 96 (151)
T 2pih_A 24 EEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKH---YEKHEALKQVEAKIDALQEELEEIP----VIQEFRDSQM 96 (151)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---cCCccchHHHHHHHHHHHHHHHcCH----HHHHHHHHHH
Confidence 44566666667888888888888888888888777776 455 5566677777777777665 4445555677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCC
Q 003864 176 EWLVCFEEIQELLVKFVESAVRFEKES 202 (790)
Q Consensus 176 ~~~~l~~~i~~~L~~~w~~lv~~~~~~ 202 (790)
++..+-..|...+.+..+..+.++..+
T Consensus 97 ~l~~LL~~I~~iI~~~I~~~i~v~tg~ 123 (151)
T 2pih_A 97 EVNDLLQLVAHTISNQVTNEIITSTGG 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 788888888888888888877766544
No 9
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=64.43 E-value=7.9 Score=28.25 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Q 003864 26 LTAPDLRLLISRLEFHSLQIKSKVQS 51 (790)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (790)
|+|+||-.+|+|+.++|+-++.+|.+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~ 27 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISK 27 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998874
No 10
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=61.57 E-value=37 Score=27.78 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=42.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhHHHhHHHHHHhHHHH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL---FSLCNDTVSRTDEISTDLSDI 84 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~---~~~~~dl~~~~~~l~~~i~~l 84 (790)
+-+.|.+.|.+|.++..+.|+++++...-=..+|..+ .+.+-+.....++....+..+
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999888644455444 455555666666666666544
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.41 E-value=63 Score=36.17 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 003864 39 EFHSLQIKSKVQSY 52 (790)
Q Consensus 39 ~~~~~e~k~~v~~~ 52 (790)
..+|+++|.++-++
T Consensus 63 tkrINELKnqLEdl 76 (562)
T 3ghg_A 63 TNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554444
No 12
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=55.62 E-value=95 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f 60 (790)
||..+..+|..++++.|.+....-..+|+..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 37 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQV 37 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999988877666555533
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.81 E-value=70 Score=35.85 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQI 45 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~ 45 (790)
|+..+|.+|..+++++
T Consensus 61 DltkrINELKnqLEdl 76 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5555555555555555
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.54 E-value=2.5e+02 Score=28.28 Aligned_cols=108 Identities=8% Similarity=0.076 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHHHH
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~~~ 108 (790)
..+...++.+.+.+.+++.+|. ....+-..+...+.... ..-..+.|+.+|+.++..++. ....+.......++++
T Consensus 49 ~~~~~~l~d~~~~~~~~e~~i~-~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~--lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 49 LNLEEEKLALKLQVSKNEQTLQ-DTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQ--ANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Q 003864 109 KEARVKKELLELVR-AIVEIGERLKGVKEALRD 140 (790)
Q Consensus 109 ~el~~~~~~l~~l~-~l~~i~~~L~~~~~~l~~ 140 (790)
.+++..+..+..++ .+......+++.-..++.
T Consensus 125 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 125 EKQEDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.43 E-value=2.1e+02 Score=30.71 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=20.3
Q ss_pred cCCCC-CCCCCCChh-hHHH----------HHHH----HHHHHHHHHHHHHHHHHh
Q 003864 16 THDLT-DQTAPLTAP-DLRL----------LISR----LEFHSLQIKSKVQSYIAS 55 (790)
Q Consensus 16 ~~~~~-~~~~~l~~~-dl~~----------~i~~----l~~~~~e~k~~v~~~i~~ 55 (790)
.++.| +|..|.-.+ |++- .|.+ +..+|+++|.++.++.++
T Consensus 27 ~~s~Ck~~d~~~C~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 27 QQSACKETGWPFCSDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred hccccCCCCCCCCchhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 44555 666666554 4433 4433 344555555555544443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.57 E-value=3.3e+02 Score=30.63 Aligned_cols=6 Identities=17% Similarity=-0.080 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003864 175 KEWLVC 180 (790)
Q Consensus 175 ~~~~~l 180 (790)
++...+
T Consensus 565 ~e~~~~ 570 (597)
T 3oja_B 565 QETSLK 570 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.00 E-value=2.4e+02 Score=25.07 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKSKVQSY------IASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDE 103 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~------i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~ 103 (790)
+|+..|+.+......+..++-++ .+.+|.+=... ..........+.+++|.+.-. ..++.. .
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~---r~~~E~di~~lrK~lD~~~l~------r~dLE~---~ 91 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ---REEAENTLQSFRQDVDNASLA------RLDLER---K 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH------HHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHhhhcccHHHHH------HHHHHH---H
Confidence 77777777776666666555433 34555543322 223333444444555432211 112222 2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003864 104 VSAKMKEARVKKELLE 119 (790)
Q Consensus 104 ~~~~~~el~~~~~~l~ 119 (790)
.+.++.||.|.+.+.+
T Consensus 92 iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 92 VESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556776655543
No 18
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=33.67 E-value=2.6e+02 Score=25.52 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCChhhHHHHHHHHHH------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhH-----------HHhHHHHHHhHHHHHh
Q 003864 24 APLTAPDLRLLISRLEF------HSLQIKSKVQSYIASHHQDFASLFSLCNDT-----------VSRTDEISTDLSDILG 86 (790)
Q Consensus 24 ~~l~~~dl~~~i~~l~~------~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl-----------~~~~~~l~~~i~~l~~ 86 (790)
.|||++|++..+..+.. ..+++=.+++..+=+.|++....|....+. ..+...+-.-+..+-.
T Consensus 1 ~~lt~~e~~~~i~~~~~~~~~~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~ 80 (148)
T 2vyw_A 1 AVLTQTQIDSILADLAHHTDTTEHITEMGVSIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLK 80 (148)
T ss_dssp CCCCHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 48999999888877743 556788899999999999999888765443 3555666666655444
Q ss_pred hhccCccchhHHHHHHHHHHHH
Q 003864 87 LISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 87 ~i~~~~~~~~l~~~v~~~~~~~ 108 (790)
.+.+ ...+...+..+..++
T Consensus 81 ~ldd---~~~l~~~l~~L~~~H 99 (148)
T 2vyw_A 81 AASN---PSVLEERIVQGAKDH 99 (148)
T ss_dssp TTTC---HHHHHHHHHHHHHHH
T ss_pred HcCC---HHHHHHHHHHHHHHH
Confidence 4433 334556666665553
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.44 E-value=27 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=19.3
Q ss_pred CCCCCCChh---hHHHHHHHHHHHHHHHHHHHH
Q 003864 21 DQTAPLTAP---DLRLLISRLEFHSLQIKSKVQ 50 (790)
Q Consensus 21 ~~~~~l~~~---dl~~~i~~l~~~~~e~k~~v~ 50 (790)
|.+.|++.+ +|+++|+.|..+..+++.++-
T Consensus 4 ~~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 4 EQSFLFSREEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776 677788888888888877765
No 20
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.59 E-value=1.3e+02 Score=24.80 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhhhhHHHhHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFA-SLFSLCNDTVSRTDE 76 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~-~~~~~~~dl~~~~~~ 76 (790)
|+|+..++.+|+..++.++.+..-.+. .|.... .+.|+...+..++..
T Consensus 2 ~~dlEEKv~~LE~sld~LQTrfARLLa-Ey~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 2 AMGLEEKVTRMESSVDLLQTRFARILA-EYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999885544 454333 334666666666554
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.03 E-value=5.1e+02 Score=27.84 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 003864 30 DLRLLISRLEFHSLQIKS 47 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~ 47 (790)
|+..+|+.|..++++++.
T Consensus 64 ~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQK 81 (390)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788888888888877753
No 22
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=30.11 E-value=2.4e+02 Score=25.77 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=40.0
Q ss_pred cCCCCCCCCCCChhhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 003864 16 THDLTDQTAPLTAPDLRLLI---SRLEFHSLQIKSKVQSYIASHHQDFASLFSLCND 69 (790)
Q Consensus 16 ~~~~~~~~~~l~~~dl~~~i---~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~d 69 (790)
.++-.||.++|++++..... .++....+++=.+++..+-..|++..+.|....+
T Consensus 3 ~~~~~d~~~~lt~~~~~~i~~sw~~v~~~~~~~g~~~y~rlf~~~P~~~~~F~~~~d 59 (159)
T 1hlm_A 3 ATQSFQSVGDLTPAEKDLIRSTWDQLMTHRTGFVADVFIRIFHNDPTAQRKFPQMAG 59 (159)
T ss_dssp CCCCCSCSCCSCHHHHHHHHHHHHHHTSCTHHHHHHHHHHHTTTCSTTTTSSTTTTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHCHHHHHhcccccC
Confidence 45556999999999866533 3444456788889999999999998888876433
No 23
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=29.44 E-value=1.8e+02 Score=26.67 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=57.8
Q ss_pred hcCCCCCCCCCCChhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------HHHhHHHHHHh
Q 003864 15 STHDLTDQTAPLTAPDLRLL---ISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCND-----------TVSRTDEISTD 80 (790)
Q Consensus 15 ~~~~~~~~~~~l~~~dl~~~---i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~d-----------l~~~~~~l~~~ 80 (790)
+.++-.||.++||+++.... -.++....+++=.+++..+=..|++....|....+ ...+...+-.-
T Consensus 2 ~~~~~~~~~~~lt~~~~~~i~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~a 81 (158)
T 1hlb_A 2 GGTLAIQAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSI 81 (158)
T ss_dssp CCTTCSCCCSCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHH
Confidence 34555699999999976443 33444445568889999999999998888876433 34455555555
Q ss_pred HHHHHhhhccCccchhHHHHHHHHHHHHHH
Q 003864 81 LSDILGLISYRPIDKEVKEIIDEVSAKMKE 110 (790)
Q Consensus 81 i~~l~~~i~~~~~~~~l~~~v~~~~~~~~e 110 (790)
|..+-..+.+ ..+...+..+..++..
T Consensus 82 l~~~v~~ld~----~~l~~~l~~L~~~H~~ 107 (158)
T 1hlb_A 82 MSEYVEELDS----DILPELLATLARTHDL 107 (158)
T ss_dssp HHHHHTTCCT----TSHHHHTHHHHHHHHH
T ss_pred HHHHHHHCCc----HHHHHHHHHHHHHhhc
Confidence 5544443322 3455566666555433
No 24
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=28.74 E-value=1.4e+02 Score=32.96 Aligned_cols=8 Identities=0% Similarity=-0.072 Sum_probs=4.1
Q ss_pred CCeEEEEE
Q 003864 202 SNRVLVKY 209 (790)
Q Consensus 202 ~~~i~v~~ 209 (790)
.+.+.|.+
T Consensus 158 ~g~~~V~~ 165 (463)
T 2d4y_A 158 GGTYNLTM 165 (463)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 45555543
No 25
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.60 E-value=2.9e+02 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003864 28 APDLRLLISRLEFHSLQIKSKVQSYIA 54 (790)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~ 54 (790)
+++=...|+.|.++++.+|+++-....
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKT 36 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557889999999999998886644
No 26
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=25.32 E-value=3.6e+02 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=34.0
Q ss_pred CCCCChhhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003864 23 TAPLTAPDLRLLI---SRLEFHSLQIKSKVQSYIASHHQDFASLFSL 66 (790)
Q Consensus 23 ~~~l~~~dl~~~i---~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~ 66 (790)
|++||+++..... .++....+++=.+++..+=..|++..+.|..
T Consensus 1 ~~~Ls~~~~~~i~~sw~~v~~~~~~~g~~~y~~lF~~~P~~k~~F~~ 47 (152)
T 3pt8_B 1 SSGLTGPQKAALKSSWSRFMNNAVTNGTNFYMDLFKAYPDTLTPFKS 47 (152)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGGGGTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhCHHhHHHHHHHHHHHHChhHHHHhhH
Confidence 6789998755443 3445566778888999999999999998876
No 27
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.00 E-value=1.2e+02 Score=19.85 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003864 29 PDLRLLISRLEFHSLQIKSKVQSYIAS 55 (790)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~ 55 (790)
+.|+.++..|+.+..++|++|-+.+.+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999887764
No 28
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=24.28 E-value=8e+02 Score=27.60 Aligned_cols=76 Identities=8% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHhHHHHHhhhccCcc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 003864 76 EISTDLSDILGLISYRPI-----DKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEEL 150 (790)
Q Consensus 76 ~l~~~i~~l~~~i~~~~~-----~~~l~~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L 150 (790)
++.++|++|-..++.... =+.+..++.++...+..+..++.+. +.|..+++.+.++...-+-+++..|+..|
T Consensus 739 Ev~dKIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdLsrNQELt---qKVdNLNQAVsEaK~tgdFSkVeQALadL 815 (876)
T 4dvy_P 739 EWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVT---DKVDNLNQAVSVAKAMGDFSRVEQVLADL 815 (876)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhhhhhHHHH---HHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 355555555544432111 2234455555555555565666543 45556667777777544455556666655
Q ss_pred HHHH
Q 003864 151 RELK 154 (790)
Q Consensus 151 ~~l~ 154 (790)
+.+-
T Consensus 816 KNss 819 (876)
T 4dvy_P 816 KNFS 819 (876)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5543
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.30 E-value=4.8e+02 Score=25.26 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=9.8
Q ss_pred hHHHhHHHHHHhHHHHHh
Q 003864 69 DTVSRTDEISTDLSDILG 86 (790)
Q Consensus 69 dl~~~~~~l~~~i~~l~~ 86 (790)
+...+...|++++..+..
T Consensus 85 e~~~~~~~Lq~el~~l~~ 102 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666665553
No 30
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.19 E-value=1.2e+02 Score=23.35 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=7.5
Q ss_pred HHHhHHHHHHhHHHHHh
Q 003864 70 TVSRTDEISTDLSDILG 86 (790)
Q Consensus 70 l~~~~~~l~~~i~~l~~ 86 (790)
+..++..|..+++.|.+
T Consensus 9 Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 9 ASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 31
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=22.32 E-value=4.3e+02 Score=23.79 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=56.8
Q ss_pred CCCCCCChhhHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----------hhhHHHhHHHHHHhHHHHHhh
Q 003864 21 DQTAPLTAPDLR---LLISRLEFHSLQIKSKVQSYIASHHQDFASLFSL----------CNDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 21 ~~~~~l~~~dl~---~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~----------~~dl~~~~~~l~~~i~~l~~~ 87 (790)
||.+.||+++.. .--..+....+++=.+++..+=+.|++....|.. ..+...+...+-.-+..+-..
T Consensus 6 ~~~m~Lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ 85 (146)
T 1it2_A 6 GPLPTLTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINS 85 (146)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 788889998754 3445566666788899999999999998888864 224556666666666655444
Q ss_pred hccCccchhHHHHHHHHHHHH
Q 003864 88 ISYRPIDKEVKEIIDEVSAKM 108 (790)
Q Consensus 88 i~~~~~~~~l~~~v~~~~~~~ 108 (790)
+.+ ...+...+..+..++
T Consensus 86 ldd---~~~l~~~l~~L~~~H 103 (146)
T 1it2_A 86 MDN---QEEIIKSLKDLSQKH 103 (146)
T ss_dssp TTC---HHHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHH
Confidence 443 334555555555543
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.38 E-value=6.7e+02 Score=34.92 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhhhccCccchhHHHHHHHHHH
Q 003864 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA 106 (790)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~i~~~~~~~~l~~~v~~~~~ 106 (790)
+++.+=..|.+=..++++.|..+...=. .....+.....+-++...+++.++.. .|...++..+-+++++
T Consensus 1956 ea~~~l~~i~~~~~~ae~~k~~v~~~~~-------~~~~~~~ei~~~k~~~e~dL~~A~Pa---~Pkr~~l~~ae~~l~~ 2025 (3245)
T 3vkg_A 1956 QANQKLKQMVQDQQAAEIKQKDARELQV-------QLDVRNKEIAVQKVKAYADLEKAEPT---GPLREEVEQLENAANE 2025 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 003864 107 KMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR-----LRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCF 181 (790)
Q Consensus 107 ~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~-----l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~ 181 (790)
.+++++..++.++.++. .+.+.=.+++++..+++ ...+-..|+.+.+.+..++.. +.+|.+-.
T Consensus 2026 ~~~~L~~~~~~L~~le~--~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E----------k~RW~~~~ 2093 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEK--SIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE----------RGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------cccHHHHH
Q ss_pred HHHHHHHHHHHhhhh
Q 003864 182 EEIQELLVKFVESAV 196 (790)
Q Consensus 182 ~~i~~~L~~~w~~lv 196 (790)
..+..+.......++
T Consensus 2094 ~~l~~~~~~L~GD~L 2108 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVV 2108 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHH
No 33
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.38 E-value=2.6e+02 Score=21.70 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 003864 145 FAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLV 189 (790)
Q Consensus 145 ~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~ 189 (790)
.+-..|+.+..++...|. +++.-.+.++++..+.|+.+..++.
T Consensus 9 q~~aILkaLdeaIe~GPW--e~SNFLRvIGKnL~eIRd~F~~~i~ 51 (57)
T 3fxd_A 9 QKETILKALNDAIEKGPW--DKSNFLRVIGKKLIAIRDRFLKRIG 51 (57)
T ss_dssp HHHHHHHHHHHHHHHSCT--TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCc--hHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345567788889999886 6888999999999999998888764
Done!