Query 003864
Match_columns 790
No_of_seqs 162 out of 205
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 06:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003864.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003864hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d2sa1 a.118.17.2 (A:525-753) 93.0 2.1 0.00015 40.9 18.0 100 121-240 6-107 (229)
2 d2piha1 a.281.1.1 (A:2-124) Un 45.0 79 0.0057 26.1 12.2 94 99-199 23-119 (123)
3 d1gqea_ e.38.1.1 (A:) Polypept 40.6 61 0.0044 32.4 10.6 58 30-87 3-63 (362)
4 d256ba_ a.24.3.1 (A:) Cytochro 33.5 1E+02 0.0074 24.9 9.1 38 121-158 62-99 (106)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 29.8 59 0.0043 24.4 6.3 52 352-411 7-58 (68)
6 d3bz7a1 b.34.3.1 (A:34-79) Myo 25.4 8.5 0.00062 25.7 0.4 25 746-770 10-34 (46)
7 d1pfva1 a.27.1.1 (A:389-550) M 25.0 31 0.0023 30.1 4.6 27 593-619 83-109 (162)
8 d2lhba_ a.1.1.2 (A:) Lamprey g 21.0 2.2E+02 0.016 23.6 11.4 47 20-66 5-54 (149)
9 d1gqea_ e.38.1.1 (A:) Polypept 20.4 3.3E+02 0.024 26.5 12.0 23 102-124 48-70 (362)
10 d2etda1 a.29.9.1 (A:35-183) Hy 18.3 2.6E+02 0.019 23.4 11.0 51 37-87 3-53 (149)
No 1
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.97 E-value=2.1 Score=40.90 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003864 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDEN--ASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRF 198 (790)
Q Consensus 121 l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~~~~~~--~~~~~I~~~L~~~~~~l~~~i~~~L~~~w~~lv~~ 198 (790)
-+.++.+...+++.+-.+.+++|.+|++.+++.+..+...+.. ..+..+...++.++.+.++.+.++|...-.
T Consensus 6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~----- 80 (229)
T d2d2sa1 6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----- 80 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3578999999999999999999999999999999998877532 233445566888888888888888865332
Q ss_pred ccCCCeEEEEEEeecCCCCcccHHHHHHHHHHhhhhhHHHHH
Q 003864 199 EKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAK 240 (790)
Q Consensus 199 ~~~~~~i~v~~~i~~~~~~~~~L~~vl~AL~~lg~l~~~l~~ 240 (790)
++ + +...+..++..|.+||.-+..-..
T Consensus 81 -~~-~-------------~~~~~~~~v~~L~rLg~~~~A~~l 107 (229)
T d2d2sa1 81 -SS-N-------------EIVHLKSGTENMIKLGLPEQALDL 107 (229)
T ss_dssp -TC-S-------------SHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -hc-C-------------ChHHHHHHHHHHHHcCCchHHHHH
Confidence 11 0 124677889999999876664444
No 2
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=45.01 E-value=79 Score=26.06 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 003864 99 EIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR---LRFAAEELRELKKDLRVGDENASEPLVYGLLRK 175 (790)
Q Consensus 99 ~~v~~~~~~~~el~~~~~~l~~l~~l~~i~~~L~~~~~~l~~~~---l~~A~~~L~~l~~~l~~~~~~~~~~~I~~~L~~ 175 (790)
+.+.++.+.++.++.+..+..+++..+.....+...+. .|+ ..+....+++++..+...+ .-.-|..-..
T Consensus 23 ~ey~~~~~a~~~v~~d~ea~~li~~f~~~q~~~q~~q~---~g~~~~~~e~~~el~~l~~~l~~np----~v~~y~~Ae~ 95 (123)
T d2piha1 23 EEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKH---YEKHEALKQVEAKIDALQEELEEIP----VIQEFRDSQM 95 (123)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH---hCCCCChHHHHHHHHHHHHHHhcCH----HHHHHHHHHH
Confidence 44455666666777778877777777766666665543 354 3455566777777776664 3444555566
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 003864 176 EWLVCFEEIQELLVKFVESAVRFE 199 (790)
Q Consensus 176 ~~~~l~~~i~~~L~~~w~~lv~~~ 199 (790)
++..+-..|...+....+.-|.++
T Consensus 96 ~l~~lL~~V~~~I~~~Is~~i~~~ 119 (123)
T d2piha1 96 EVNDLLQLVAHTISNQVTNEIITS 119 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCC
Confidence 666677666666666655544433
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=40.58 E-value=61 Score=32.38 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhh--hhHHHhHHHHHHhHHHHHhh
Q 003864 30 DLRLLISRLEFHSLQIKSKV-QSYIASHHQDFASLFSLC--NDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v-~~~i~~~y~~f~~~~~~~--~dl~~~~~~l~~~i~~l~~~ 87 (790)
++...|+.|..++..+++-. .+-++++|.+....+..- -+...++.++.+++..++..
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~i 63 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAV 63 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHH
Confidence 57777888888888877643 244555555444443221 12334444555555544444
No 4
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=33.54 E-value=1e+02 Score=24.89 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Q 003864 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLR 158 (790)
Q Consensus 121 l~~l~~i~~~L~~~~~~l~~~~l~~A~~~L~~l~~~l~ 158 (790)
-+.+..+..-|+.++++..+|++..|=..|+++....+
T Consensus 62 ~~g~d~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~ 99 (106)
T d256ba_ 62 RHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRN 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999988887654
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=29.81 E-value=59 Score=24.38 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCcccCCCccchhHhhHHHhHHHHHHHHHhHHHHHHHHHhhh
Q 003864 352 DFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLL 411 (790)
Q Consensus 352 ~f~~vi~~~~~Fe~~L~~lgf~~~~~~~~~~L~~~v~~v~~~f~~krr~~~L~~aR~l~~ 411 (790)
.|+..+....+....|.+-+..- +..+..|-+.+. +.|.|++.|+.|+.-+.
T Consensus 7 sfEe~l~~LE~IV~~LE~g~l~L-----eesl~~ye~G~~---L~~~C~~~L~~ae~ki~ 58 (68)
T d1vp7a_ 7 DFETALAELESLVSAMENGTLPL-----EQSLSAYRRGVE---LARVCQDRLAQAEQQVK 58 (68)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 47888888888888888765543 567777877765 78999999999986554
No 6
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=25.43 E-value=8.5 Score=25.68 Aligned_cols=25 Identities=44% Similarity=0.348 Sum_probs=21.3
Q ss_pred cccccccccceeeeeecccccchhh
Q 003864 746 LNSCYVLGLSVLEISFHSTFKTVDE 770 (790)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (790)
-|+.|-.|--|-|.|=.-||||||.
T Consensus 10 erdsyecgeivsetsdsftfktvdg 34 (46)
T d3bz7a1 10 ERDSYECGEIVSETSDSFTFKTVDG 34 (46)
T ss_dssp CTTCCEEEEEEEECSSEEEEECCC-
T ss_pred ccccchhcceeecccCceEEEeccC
Confidence 3688999999999998889999985
No 7
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=25.03 E-value=31 Score=30.13 Aligned_cols=27 Identities=7% Similarity=0.066 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCCCh
Q 003864 593 ESAKFSIEQVVFILEKVHIIWEPLLLP 619 (790)
Q Consensus 593 e~~e~av~q~l~~L~~L~~~W~~vLp~ 619 (790)
+.+...+..++..++.++.--+|++|.
T Consensus 83 ~~~~~vl~~~~~~lr~~~~lL~P~mP~ 109 (162)
T d1pfva1 83 ADLQAICSMGINLFRVLMTYLKPVLPK 109 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345567788888888888888999887
No 8
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=20.96 E-value=2.2e+02 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=37.2
Q ss_pred CCCCCCCChhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 003864 20 TDQTAPLTAPDLRLL---ISRLEFHSLQIKSKVQSYIASHHQDFASLFSL 66 (790)
Q Consensus 20 ~~~~~~l~~~dl~~~---i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~ 66 (790)
.+|-+|||++|.... -.++....+++-.+++..+=+.|+++...|..
T Consensus 5 ~~~~~~Ls~~e~~~I~~sW~~v~~~~~~~g~~~f~~lF~~~P~~~~~F~~ 54 (149)
T d2lhba_ 5 TGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPK 54 (149)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCHHHHHHhHh
Confidence 488999999975544 34556667788888999999999999988864
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=20.40 E-value=3.3e+02 Score=26.53 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003864 102 DEVSAKMKEARVKKELLELVRAI 124 (790)
Q Consensus 102 ~~~~~~~~el~~~~~~l~~l~~l 124 (790)
+.+++..+|+...+.++...+.+
T Consensus 48 ~kAqkl~KE~s~L~~iVe~~~~l 70 (362)
T d1gqea_ 48 ERAQALGKERSSLEAVVDTLDQM 70 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544444433
No 10
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=18.31 E-value=2.6e+02 Score=23.43 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHHHHHHhHHHHHhh
Q 003864 37 RLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL 87 (790)
Q Consensus 37 ~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~dl~~~~~~l~~~i~~l~~~ 87 (790)
+++.++.+--+.|.-.+.+++.=+-.+...+..-..--+++..++-.+.+.
T Consensus 3 ~l~~~v~~a~s~Idv~L~rR~dli~nLv~~vk~y~~~Ek~~l~~v~~~R~~ 53 (149)
T d2etda1 3 SLEQEVQEKYSQIQNQLQRRADLIPNLVETVKGYAAHEKEILEEIANARAK 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888888888888766666666555444444455555544444
Done!