Query 003865
Match_columns 790
No_of_seqs 159 out of 200
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 13:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2295 C2H2 Zn-finger protein 100.0 2.9E-89 6.3E-94 745.9 15.0 595 43-784 27-648 (648)
2 PF04959 ARS2: Arsenite-resist 100.0 7.3E-37 1.6E-41 309.0 6.7 128 481-618 3-136 (214)
3 PF12066 DUF3546: Domain of un 99.9 7.3E-24 1.6E-28 195.0 8.9 85 227-335 1-85 (110)
4 KOG2295 C2H2 Zn-finger protein 98.8 2.6E-09 5.7E-14 120.0 5.9 92 219-337 41-135 (648)
5 PF13821 DUF4187: Domain of un 98.0 2.2E-06 4.7E-11 71.5 1.9 32 450-481 8-39 (55)
6 PF13894 zf-C2H2_4: C2H2-type 89.3 0.27 5.8E-06 32.5 1.8 24 555-580 1-24 (24)
7 PF00096 zf-C2H2: Zinc finger, 88.8 0.22 4.8E-06 33.7 1.2 23 555-580 1-23 (23)
8 KOG3973 Uncharacterized conser 84.0 2.6 5.7E-05 47.3 6.8 25 172-198 376-400 (465)
9 KOG0921 Dosage compensation co 82.5 4 8.6E-05 50.7 8.1 6 122-127 1156-1161(1282)
10 PF12756 zf-C2H2_2: C2H2 type 82.0 0.68 1.5E-05 40.1 1.2 44 554-599 50-94 (100)
11 KOG1924 RhoA GTPase effector D 81.5 3.2 6.9E-05 50.6 6.8 12 536-547 425-436 (1102)
12 PF12171 zf-C2H2_jaz: Zinc-fin 79.7 0.71 1.5E-05 32.9 0.5 24 554-579 1-24 (27)
13 KOG1994 Predicted RNA binding 75.3 2.3 5E-05 45.3 2.9 84 389-480 166-250 (268)
14 PF12874 zf-met: Zinc-finger o 73.9 2.1 4.6E-05 29.4 1.5 23 555-579 1-23 (25)
15 PF04959 ARS2: Arsenite-resist 73.5 0.59 1.3E-05 49.0 -1.9 20 678-697 190-209 (214)
16 smart00355 ZnF_C2H2 zinc finge 72.7 2.9 6.3E-05 27.6 2.0 24 555-581 1-24 (26)
17 PF04780 DUF629: Protein of un 72.3 3.5 7.5E-05 47.9 3.6 45 535-586 42-87 (466)
18 smart00451 ZnF_U1 U1-like zinc 71.3 2.8 6E-05 30.8 1.7 29 554-584 3-32 (35)
19 KOG0717 Molecular chaperone (D 70.3 4.3 9.4E-05 47.0 3.8 43 551-595 289-332 (508)
20 PHA00616 hypothetical protein 69.6 2 4.3E-05 35.2 0.7 26 555-582 2-27 (44)
21 PF13912 zf-C2H2_6: C2H2-type 60.9 5.5 0.00012 27.9 1.5 25 555-581 2-26 (27)
22 PF02892 zf-BED: BED zinc fing 54.3 10 0.00022 29.6 2.1 27 553-581 15-45 (45)
23 KOG2654 Uncharacterized conser 51.4 30 0.00066 39.9 6.0 24 67-94 105-128 (461)
24 KOG3875 Peroxisomal biogenesis 50.6 38 0.00082 38.1 6.4 8 113-120 5-12 (362)
25 KOG0921 Dosage compensation co 48.2 43 0.00094 42.3 7.0 10 16-25 1135-1144(1282)
26 KOG1924 RhoA GTPase effector D 44.7 48 0.001 41.3 6.5 11 704-714 546-556 (1102)
27 PF05605 zf-Di19: Drought indu 44.6 18 0.00038 29.8 2.2 27 554-583 2-28 (54)
28 KOG4661 Hsp27-ERE-TATA-binding 42.5 92 0.002 37.7 8.2 27 119-145 782-814 (940)
29 KOG2482 Predicted C2H2-type Zn 41.7 4.6 0.0001 45.3 -2.0 59 553-616 194-252 (423)
30 PF04423 Rad50_zn_hook: Rad50 39.0 49 0.0011 27.2 4.0 46 537-590 7-52 (54)
31 KOG2893 Zn finger protein [Gen 37.9 1.7E+02 0.0037 32.1 8.8 32 554-588 34-66 (341)
32 KOG3993 Transcription factor ( 37.1 12 0.00026 43.2 0.2 27 554-582 356-382 (500)
33 KOG2146 Splicing coactivator S 36.7 74 0.0016 35.5 5.9 31 97-135 210-240 (354)
34 KOG4246 Predicted DNA-binding 35.1 27 0.00058 43.4 2.6 13 98-110 326-338 (1194)
35 KOG4173 Alpha-SNAP protein [In 32.7 23 0.0005 37.7 1.4 49 531-580 122-170 (253)
36 PF13909 zf-H2C2_5: C2H2-type 32.6 26 0.00056 24.0 1.2 24 555-581 1-24 (24)
37 PHA00733 hypothetical protein 31.3 34 0.00073 33.2 2.2 26 554-581 99-124 (128)
38 PF13913 zf-C2HC_2: zinc-finge 31.2 35 0.00076 24.5 1.7 20 556-578 4-23 (25)
39 KOG2146 Splicing coactivator S 28.6 1.5E+02 0.0033 33.2 6.7 12 83-94 214-225 (354)
40 PF05443 ROS_MUCR: ROS/MUCR tr 27.9 44 0.00095 33.1 2.4 34 550-588 68-101 (132)
41 PF13465 zf-H2C2_2: Zinc-finge 26.4 42 0.00092 23.9 1.5 24 539-567 2-25 (26)
42 PF05605 zf-Di19: Drought indu 26.0 81 0.0018 25.9 3.2 25 553-581 30-54 (54)
43 smart00805 AGTRAP Angiotensin 24.3 81 0.0018 32.3 3.5 13 770-782 133-145 (159)
44 KOG2654 Uncharacterized conser 22.4 1.6E+02 0.0034 34.5 5.6 11 507-517 434-444 (461)
45 KOG0132 RNA polymerase II C-te 21.8 5.1E+02 0.011 32.8 9.9 25 71-98 692-716 (894)
46 PRK00091 miaA tRNA delta(2)-is 21.8 2.2E+02 0.0048 31.5 6.5 47 225-272 239-285 (307)
47 PF12756 zf-C2H2_2: C2H2 type 21.7 31 0.00066 29.8 0.0 27 557-585 2-28 (100)
48 KOG3623 Homeobox transcription 21.1 37 0.0008 41.8 0.5 29 553-583 280-308 (1007)
49 PF01715 IPPT: IPP transferase 20.6 2.1E+02 0.0045 30.7 5.9 47 225-272 203-249 (253)
No 1
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=100.00 E-value=2.9e-89 Score=745.95 Aligned_cols=595 Identities=28% Similarity=0.324 Sum_probs=501.5
Q ss_pred CCCCCCCCCCCC---CCcccccchhhhhhccCCCCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhcccCCCCCCCCCCC
Q 003865 43 NNSAPQSSPPPP---PPPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRNRSPPPPMPRERDRDYKRRSTVSPPPPPLP 119 (790)
Q Consensus 43 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (790)
.-++|-|++|+- .+++-++.+++|.+++++|+++++..++ |-|+..-|+ +.++++++.+.++++ +
T Consensus 27 ~r~~p~S~sp~geqs~~~p~r~t~kkr~~~~dddi~e~~p~kr---ynd~k~dp~------~qq~~~~f~a~k~ee---w 94 (648)
T KOG2295|consen 27 ERSQPRSQSPPGEQSAYHPERSTFKKRLNSYDDDIRESGPYKR---YNDYKIDPR------TQQNAVFFEAHKDEE---W 94 (648)
T ss_pred CCCCccccCCCccccccCcccchHHHhhcccccccccCCCccc---ccccCCCCc------hhhhHHHHHhcCCcc---h
Confidence 334444444444 3355678899999999999999966654 777776665 337888888888877 9
Q ss_pred CCCCCCCCC--CCCCCCccCccCCCCCCCCCCCCCCCCCCC-CCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 003865 120 YRDRRHSPP--PRRSPPYKRSRRDDGGYEPRRGSPRGGFGP-DRRFGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGG 196 (790)
Q Consensus 120 ~~~rr~Sp~--~~~sPp~kR~rrd~~g~d~~rg~p~~~~g~-dr~~G~d~~gg~~~~~gg~~~y~~~~~~G~~~~r~~~g 196 (790)
||+++|+++ -++++++++.+++..+|+.+++.|.++++. |++|+|+|+++|.+++++..++.....++..+++-+
T Consensus 95 yr~k~h~d~~~k~r~~~~g~yqn~~q~f~~r~e~~~~~~~~~D~~fada~~~~~d~~vv~~~g~te~~~r~~l~qk~e-- 172 (648)
T KOG2295|consen 95 YRKKYHPDATEKLRNSLHGTYQNRLQVFYARTERGFFESHCLDAWFADAIWVMLDQGVVKEEGGTEKSLRRALYQKFE-- 172 (648)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcccchhhhHhhhhhhhhhcccCCCcccHHHHHHHHhh--
Confidence 999999999 888999999998888999999999999998 999999999999999999999999999998888876
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 003865 197 YQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWYFSS 276 (790)
Q Consensus 197 ~~~~p~~~~~g~~g~~~~~~~~~~~~~~lmsFKQFl~~~~DdIspeEA~~rYqEYK~ef~~~Qi~~FFe~HKdEeW~~~~ 276 (790)
+ ..+.+||.++...+..+....|++|+ +|++++.++...|++| .+|. +|..+||+-||...|
T Consensus 173 ------D-e~~~~gy~De~~~gt~e~e~kkssk~-----ddd~d~s~~ee~e~e~-se~~-tqksa~~n~hke~sl---- 234 (648)
T KOG2295|consen 173 ------D-EGLDAGYKDEFQLGTAEDEIKKSSKP-----DDDTDDSILEENEPEL-SEWG-TQKSANDNTHKECSL---- 234 (648)
T ss_pred ------h-ccccccccccccCCCcchhhhcccCc-----ccccCcccccccchhh-hhhh-hhhhhhhhhhHHHHH----
Confidence 4 56789999999989899999999999 9999999999999999 8888 999999999999999
Q ss_pred chhhhhhhhccccchhhhhhhhhhcCCchhHHHHH-------------HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 003865 277 FTLFLLCTLRCSYYMCFVCRLKDKYHPTNLVAVIE-------------RRNDLARKVAKDFLLDLQSGTLDLGPSVNASS 343 (790)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~KYhP~~~~~~~~-------------~r~~~~~~~ak~f~~~l~~G~ld~~p~v~a~~ 343 (790)
|+.+|+|.+++++|+ +++.+|.++++.|+..++++++++++.+.|.
T Consensus 235 --------------------l~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aL- 293 (648)
T KOG2295|consen 235 --------------------LVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWAL- 293 (648)
T ss_pred --------------------HHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHh-
Confidence 999999999999975 6889999999999999999999999877776
Q ss_pred cCCCCCCCCCCCCccccCCCcccccCCCCCccccccc-cCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhcCcccccccC
Q 003865 344 SNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLS-AAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCG 422 (790)
Q Consensus 344 ~~k~g~~sD~nsed~~~~~~kr~r~G~~~~k~~d~l~-~aPka~Pi~S~peRI~kDLeQAr~LV~kLDaEkGIe~NpL~~ 422 (790)
++.+-++.++++++....+++.|++-+-.+...+++ +|+|++.+.+.+-||..+.+|+..|+.+|+.++-|..|++.-
T Consensus 294 -n~irl~s~~~se~en~~i~rrvr~~~Gia~~keiasn~a~k~~~lldk~irl~~~a~~t~al~tkl~s~n~i~kni~d~ 372 (648)
T KOG2295|consen 294 -NGIRLRSNFLSESENPDITRRVRPINGIAKHKEIASNAAQKLKNLLDKLIRLIDRASQTQALVTKLSSPNPIAKNIEDR 372 (648)
T ss_pred -hhccccccccccccccCccceeccCCchhhHHHHHHHHHHhhhHHHhhhHHHhhcccccccchhhccCCCHHHHHHHHH
Confidence 455667888999888888999999988777777666 799999999999999999999999999999999999997665
Q ss_pred CCCccccccccC-CCCCCeeeeccccccCCccchhhHHHHHHHHHHHhhcccccccccc------cccccccccCCCCCC
Q 003865 423 SDNDKMNREKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETS------EAKGLRHVRAEGKSS 495 (790)
Q Consensus 423 ~d~~k~d~eks~-gs~gPi~i~egl~eV~dle~~k~LDllI~YLRrVHsvDYYc~~E~d------ercGi~HvR~~~~s~ 495 (790)
..+.++..|+.+ |+.+|.+++||+..+.++..+++||+||+|||+||++|||+.+||+ ++||++|||+++..+
T Consensus 373 l~te~S~eE~e~~gssg~e~p~eg~~~er~d~~lk~LDll~~YLr~VhslDfyn~~ey~~e~~mpnrcgl~hvR~~~~vs 452 (648)
T KOG2295|consen 373 LKTEASMEEDELLGSSGPEVPIEGLTSERDDIRLKLLDLLAEYLRIVHSLDFYNSKEYESEDAMPNRCGLIHVRGKGFVS 452 (648)
T ss_pred hhhhcchhhhhhcCCCCCcCccccCccccchhHHHHHHHHHHHHHHHHhcccccccccchhhhcccccCceeecccCCCC
Confidence 555454445545 3888999999999999999999999999999999999999999986 389999999984432
Q ss_pred CCCcchhhhHHhhHHHHHHHhhcCChhhHhhhhhhHHHHHHHhhhHHHHhhhhcccCcccccCCCCCcccccchhhHHHH
Q 003865 496 DITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKH 575 (790)
Q Consensus 496 ~~ts~~~eWeKklD~~~q~rL~~~d~le~l~gkekID~al~e~ve~fVkk~~DEk~g~KwrC~l~gCtKLFKgpEFVrKH 575 (790)
. ....+|++++++.|+.+|...++++.+-.++++++.++++|++||.+|++|+++|||+|+|++|+|||||+|||+||
T Consensus 453 ~--~ev~e~es~f~s~le~~l~~~~~lee~eakkkg~k~~e~eve~~v~s~t~e~~kdKy~C~lsgc~KlF~gpEFvrKH 530 (648)
T KOG2295|consen 453 S--KEVGEEESIFLSDLENNLACLLELEEEEAKKKGAKDVEDEVENFVDSNTMELDKDKYLCPLSGCAKLFKGPEFVRKH 530 (648)
T ss_pred c--ccchhHHHHHHHHhhhcccccccchHHHHHHhcccCHHHHHHHHHHHHHHHhhcccccCCCcchHhhccCHHHHHHH
Confidence 2 24678999999999999988888887777888888899999999999999999999999999999999999999999
Q ss_pred HhhhChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccccccCCCCCccccccCCccccccccCCCCCCCC
Q 003865 576 LKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDR 655 (790)
Q Consensus 576 I~nKH~E~Veev~~Kv~E~~yFnNYl~DP~RP~~~pv~qq~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~~~~g~~r~~~ 655 (790)
|++||.|||+++++ |++||||||+||+||..+++ +|+.|.+.++.+ |+++|++|.- .|+
T Consensus 531 i~~KH~d~leeirk---ea~ffnnYl~Dp~rp~~pe~-~~q~prd~qIl~--------r~~~gG~r~~-------~r~-- 589 (648)
T KOG2295|consen 531 INKKHKDKLEEIRK---EAIFFNNYLLDPCRPMDPEV-VSQSPRDLQILN--------RGPYGGFRNY-------NRN-- 589 (648)
T ss_pred HHHHHHHHHHHHHH---HHHHHHhhccCccccCCCcc-ccCCCCcccccc--------CCCCCCccCC-------CCC--
Confidence 99999999999984 89999999999999999999 777787777633 3445554430 011
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCccccccCCCCCccCCCCCCCCCCCCCccccCCCCCCCCCCCCCChHHHHHHHHhcCCC
Q 003865 656 SDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGP 735 (790)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~m~d~~g~~~~~~~~~f~~~~~~pp~lmpvpgagplGpfvpaPp~~~m~m~~~~g~~ 735 (790)
-..++++...-+|.|||+| |+|.|||-
T Consensus 590 --------------~~dg~~p~~~g~d~fgg~G----------------------a~~sg~~p----------------- 616 (648)
T KOG2295|consen 590 --------------YTDGTTPYGRGRDEFGGSG----------------------ASPSGPQP----------------- 616 (648)
T ss_pred --------------CCCCCCCCCCCCCcccCCC----------------------CCCCCCCC-----------------
Confidence 1334455555568888866 33556553
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCCCccCCccccCCCCCCCccc
Q 003865 736 PFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTV 784 (790)
Q Consensus 736 ~~~~~g~~~~~~p~~~gp~~~~~~p~~~~dpr~~r~Y~DLDaP~~~v~v 784 (790)
||.++|.. +...|.|+ |+||||||||+++|+|
T Consensus 617 pf~gqg~~------------f~~~p~~R-----~vsYqDLDAPddev~~ 648 (648)
T KOG2295|consen 617 PFSGQGGM------------FHRRPRYR-----LVSYQDLDAPDDEVPE 648 (648)
T ss_pred CcccCCCC------------cCCCcccc-----cccccccCCccccCCC
Confidence 45544311 33455544 9999999999999986
No 2
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=100.00 E-value=7.3e-37 Score=308.99 Aligned_cols=128 Identities=34% Similarity=0.552 Sum_probs=66.8
Q ss_pred cccccccccCCCCCCCCCc-chhhhHHhhHHHHHHHhhcCC-----hhhHhhhhhhHHHHHHHhhhHHHHhhhhcccCcc
Q 003865 481 EAKGLRHVRAEGKSSDITN-NGAEWEKKLDFRWQERLRSQD-----PLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWK 554 (790)
Q Consensus 481 ercGi~HvR~~~~s~~~ts-~~~eWeKklD~~~q~rL~~~d-----~le~l~gkekID~al~e~ve~fVkk~~DEk~g~K 554 (790)
+||||+|||++.+++.+++ +..+|+|+|+++|+.+|+..+ ++.+|+++ .+|+ +|++||.++++|++++|
T Consensus 3 ~rcGi~HvRg~~p~~~~~~~e~~~w~k~~e~kl~~~L~~~~~l~~~~~~klG~k-~~e~----eve~~v~~~~~e~~~~K 77 (214)
T PF04959_consen 3 NRCGIIHVRGPPPSNRVTSDEVSEWVKTFEEKLQQLLEPRETLSEEELKKLGGK-DPEE----EVEKFVQKNTKEEDEDK 77 (214)
T ss_dssp -----------------------HHHHHHHHHHHHHHHS--HHHHHH-HHHHHH-HHHH----HHGGGEEEEE-SSSSEE
T ss_pred ccccccccccccccCccCHHHHHHHHHHHHHHHHHHcCCcCcCChHHHHHHccC-cHHH----HHHHHHHHHHHHHcCCE
Confidence 6899999999988876654 568999999999999997653 56666544 4454 45555555555566789
Q ss_pred cccCCCCCcccccchhhHHHHHhhhChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMP 618 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH~E~Veev~~Kv~E~~yFnNYl~DP~RP~~~pv~qq~~~ 618 (790)
|+|++ |+|||||+|||+|||+|||+|||+++++ |+.||||||+||+||+.+++++++.+
T Consensus 78 ~~C~l--c~KlFkg~eFV~KHI~nKH~e~ve~~~~---ev~~fnnY~~Dp~rp~~~~~~~~~~p 136 (214)
T PF04959_consen 78 WRCPL--CGKLFKGPEFVRKHIFNKHPEKVEEVKK---EVEYFNNYLLDPKRPQPPEANPNQHP 136 (214)
T ss_dssp EEE-S--SS-EESSHHHHHHHHHHH-HHHHHHHHH---HHHHHHHH------------------
T ss_pred ECCCC--CCcccCChHHHHHHHhhcCHHHHHHHHH---HHHHHHHHhcCcccCCCCcccccCcc
Confidence 99987 9999999999999999999999999986 66899999999999998887765544
No 3
>PF12066 DUF3546: Domain of unknown function (DUF3546); InterPro: IPR021933 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 93 to 114 amino acids in length. This domain has two completely conserved Y residues that may be functionally important. ; PDB: 3AX1_A.
Probab=99.90 E-value=7.3e-24 Score=195.02 Aligned_cols=85 Identities=46% Similarity=0.868 Sum_probs=76.7
Q ss_pred CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhccccchhhhhhhhhhcCCchh
Q 003865 227 SYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWYFSSFTLFLLCTLRCSYYMCFVCRLKDKYHPTNL 306 (790)
Q Consensus 227 sFKQFl~~~~DdIspeEA~~rYqEYK~ef~~~Qi~~FFe~HKdEeW~~~~~~~~~~~~~~~~~~~~~~~~~~~KYhP~~~ 306 (790)
||||||+.++|+|+|++|+++|++||.+|.++|++.||++||+++| |++||||..+
T Consensus 1 tfK~F~~~~~D~i~~~ea~~~Y~eYK~e~~~~q~~~FF~~HK~eeW------------------------FreKY~P~~~ 56 (110)
T PF12066_consen 1 TFKQFLEQQDDDITPEEAQKRYDEYKEEFQRKQLRAFFEQHKDEEW------------------------FREKYHPEEL 56 (110)
T ss_dssp -HHHHGGGTTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHH------------------------HHHHH-HHHH
T ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------------------------HHHhcCcHhh
Confidence 8999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003865 307 VAVIERRNDLARKVAKDFLLDLQSGTLDL 335 (790)
Q Consensus 307 ~~~~~~r~~~~~~~ak~f~~~l~~G~ld~ 335 (790)
.++.++|++.++.+++.|+++|++|+||.
T Consensus 57 ~~~~~~~~~~~~~~~~~F~~~l~~G~~d~ 85 (110)
T PF12066_consen 57 DKRREERKEFRKGRADVFMEDLESGKFDE 85 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999993
No 4
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=98.85 E-value=2.6e-09 Score=120.04 Aligned_cols=92 Identities=32% Similarity=0.524 Sum_probs=79.3
Q ss_pred CCCCCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhccccchhhhhhhh
Q 003865 219 STQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWYFSSFTLFLLCTLRCSYYMCFVCRLK 298 (790)
Q Consensus 219 ~~~~~~lmsFKQFl~~~~DdIspeEA~~rYqEYK~ef~~~Qi~~FFe~HKdEeW~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (790)
+.+.+.+-|||.|+..++|+|...+|+++|++||.++..+|...||.+||+++| |+
T Consensus 41 s~~~p~r~t~kkr~~~~dddi~e~~p~krynd~k~dp~~qq~~~~f~a~k~eew------------------------yr 96 (648)
T KOG2295|consen 41 SAYHPERSTFKKRLNSYDDDIRESGPYKRYNDYKIDPRTQQNAVFFEAHKDEEW------------------------YR 96 (648)
T ss_pred cccCcccchHHHhhcccccccccCCCcccccccCCCCchhhhHHHHHhcCCcch------------------------hh
Confidence 356777889999999999999999999999999999999999999999999999 99
Q ss_pred hhcCCchhHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCCC
Q 003865 299 DKYHPTNLVAVIERRNDLARK---VAKDFLLDLQSGTLDLGP 337 (790)
Q Consensus 299 ~KYhP~~~~~~~~~r~~~~~~---~ak~f~~~l~~G~ld~~p 337 (790)
.||||... -.+|+.+-.+ .-..|....++|.++..+
T Consensus 97 ~k~h~d~~---~k~r~~~~g~yqn~~q~f~~r~e~~~~~~~~ 135 (648)
T KOG2295|consen 97 KKYHPDAT---EKLRNSLHGTYQNRLQVFYARTERGFFESHC 135 (648)
T ss_pred hccCCChH---HHHHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 99999764 4556655444 467888888888887633
No 5
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=98.03 E-value=2.2e-06 Score=71.48 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=28.4
Q ss_pred CCccchhhHHHHHHHHHHHhhccccccccccc
Q 003865 450 KGLEGVELLDTLITYLWRIHGVDYYGMVETSE 481 (790)
Q Consensus 450 ~dle~~k~LDllI~YLRrVHsvDYYc~~E~de 481 (790)
..+...++|+++|.|||.+|++||||+++|++
T Consensus 8 ~~l~~~e~L~~l~~YLR~~~~YC~~Cg~~Y~d 39 (55)
T PF13821_consen 8 EELSPEERLDKLLSYLREEHNYCFWCGTKYDD 39 (55)
T ss_pred hccCHHHHHHHHHHHHHhhCceeeeeCCccCC
Confidence 34567899999999999999999999999864
No 6
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=89.29 E-value=0.27 Score=32.53 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=20.2
Q ss_pred cccCCCCCcccccchhhHHHHHhhhC
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKH 580 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH 580 (790)
|.|.+ |++.|....=+++|+.+.|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence 67987 9999999999999999877
No 7
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=88.79 E-value=0.22 Score=33.66 Aligned_cols=23 Identities=30% Similarity=0.758 Sum_probs=20.7
Q ss_pred cccCCCCCcccccchhhHHHHHhhhC
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKH 580 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH 580 (790)
|.|.. |+|.|....-+.+||++ |
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHH-H
T ss_pred CCCCC--CCCccCCHHHHHHHHhH-C
Confidence 57985 99999999999999987 5
No 8
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=83.98 E-value=2.6 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=18.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003865 172 REMGGRPGYGDERPHGRFAGRSSGGYQ 198 (790)
Q Consensus 172 ~~~gg~~~y~~~~~~G~~~~r~~~g~~ 198 (790)
++.||+++|. +|.+..++|.+++|+
T Consensus 376 gG~GGGggyq--qp~~~~~~hqn~~ye 400 (465)
T KOG3973|consen 376 GGRGGGGGYQ--QPQQQQQQHQNQSYE 400 (465)
T ss_pred CCCCCCCCCc--Cchhhhhcccccccc
Confidence 4467778888 777777777776665
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=82.52 E-value=4 Score=50.74 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.9
Q ss_pred CCCCCC
Q 003865 122 DRRHSP 127 (790)
Q Consensus 122 ~rr~Sp 127 (790)
.+||+=
T Consensus 1156 StrygD 1161 (1282)
T KOG0921|consen 1156 STRYGD 1161 (1282)
T ss_pred cccccC
Confidence 455553
No 10
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=82.04 E-value=0.68 Score=40.10 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=24.1
Q ss_pred ccccCCCCCcccccchhhHHHHHhhh-ChhHHHHHHHHHHHHHHHhh
Q 003865 554 KYGCGAKGCTKLFHAAEFVHKHLKLK-HPELVIELTSKVREELYFQN 599 (790)
Q Consensus 554 KwrC~l~gCtKLFKgpEFVrKHI~nK-H~E~Veev~~Kv~E~~yFnN 599 (790)
+|.|.+ |+|.|+..+=+.+||..+ |..+..+....-.|...|-+
T Consensus 50 ~~~C~~--C~~~f~s~~~l~~Hm~~~~H~~~~~~~~~~~~~~~~~y~ 94 (100)
T PF12756_consen 50 SFRCPY--CNKTFRSREALQEHMRSKHHKKRNSESEESWEEFEKFYD 94 (100)
T ss_dssp SEEBSS--SS-EESSHHHHHHHHHHTTTTC-S---------------
T ss_pred CCCCCc--cCCCCcCHHHHHHHHcCccCCCccccccccccccccccc
Confidence 799997 999999999999999976 66654433222234444444
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=81.53 E-value=3.2 Score=50.64 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=8.2
Q ss_pred HHhhhHHHHhhh
Q 003865 536 VDALDPFVRKIR 547 (790)
Q Consensus 536 ~e~ve~fVkk~~ 547 (790)
.+.||.||.+|-
T Consensus 425 ykLIEecISqIv 436 (1102)
T KOG1924|consen 425 YKLIEECISQIV 436 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 466777777763
No 12
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=79.75 E-value=0.71 Score=32.85 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=21.0
Q ss_pred ccccCCCCCcccccchhhHHHHHhhh
Q 003865 554 KYGCGAKGCTKLFHAAEFVHKHLKLK 579 (790)
Q Consensus 554 KwrC~l~gCtKLFKgpEFVrKHI~nK 579 (790)
+|.|.+ |.|-|+...-+..|+..|
T Consensus 1 q~~C~~--C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDA--CDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTT--TTBBBSSHHHHHCCTTSH
T ss_pred CCCccc--CCCCcCCHHHHHHHHccC
Confidence 478997 999999999999999874
No 13
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=75.33 E-value=2.3 Score=45.32 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCccc-ccccCCCCccccccccCCCCCCeeeeccccccCCccchhhHHHHHHHHHH
Q 003865 389 SSEPRRIQVDIEQAQALVRKLDSEKGITE-NILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWR 467 (790)
Q Consensus 389 ~S~peRI~kDLeQAr~LV~kLDaEkGIe~-NpL~~~d~~k~d~eks~gs~gPi~i~egl~eV~dle~~k~LDllI~YLRr 467 (790)
-+...++..|+.-|++..-.|+-++|.-- ..|..-+. ++.+. . -.-+.+ +.+.+-+-..+.|-.+.-|||-
T Consensus 166 d~~kk~~i~~vr~~~~a~~~l~~~~g~~~ps~~kk~e~--~~~e~-~-~~k~~e----~~E~eeei~Ee~lt~in~~LR~ 237 (268)
T KOG1994|consen 166 DEDKKNMIPMVRESLEASPALKGEKGFGRPSTLKKCET--SIIES-R-ITKDTE----LAELEEEIIEERLTKINIFLRS 237 (268)
T ss_pred hhhhhhhHHHHHHHHHhhHHhcCccccCCcchhhhccc--cchhh-h-ccCccc----hhHHHHHHHHHHHHHHHHHHhc
Confidence 36677999999999999989988876532 22221110 00000 0 000110 0011111235789999999999
Q ss_pred Hhhcccccccccc
Q 003865 468 IHGVDYYGMVETS 480 (790)
Q Consensus 468 VHsvDYYc~~E~d 480 (790)
-|-+||||++.|.
T Consensus 238 eh~YC~fCG~~y~ 250 (268)
T KOG1994|consen 238 EHYYCFFCGIKYK 250 (268)
T ss_pred cceEEEEeccccC
Confidence 9999999999875
No 14
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=73.93 E-value=2.1 Score=29.42 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=20.7
Q ss_pred cccCCCCCcccccchhhHHHHHhhh
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLK 579 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nK 579 (790)
|.|.+ |.+.|....-++.|+.-|
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTTH
T ss_pred CCCCC--CCCCcCCHHHHHHHHCcC
Confidence 67987 999999999999999764
No 15
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=73.53 E-value=0.59 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=0.0
Q ss_pred ccccccCCCCCccCCCCCCC
Q 003865 678 ESMFDTFGGQGIRVAPPFPS 697 (790)
Q Consensus 678 ~~m~d~~g~~~~~~~~~f~~ 697 (790)
..|||.|++++++++.|+..
T Consensus 190 rg~~d~~~g~~~~~~~p~~~ 209 (214)
T PF04959_consen 190 RGNYDNFRGQGGYYGKPRNR 209 (214)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 33555555555555444443
No 16
>smart00355 ZnF_C2H2 zinc finger.
Probab=72.74 E-value=2.9 Score=27.57 Aligned_cols=24 Identities=29% Similarity=0.841 Sum_probs=20.5
Q ss_pred cccCCCCCcccccchhhHHHHHhhhCh
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKHP 581 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH~ 581 (790)
|.|.. |.|.|....-+..|+. +|.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHH-Hhc
Confidence 46875 9999999999999998 654
No 17
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=72.27 E-value=3.5 Score=47.86 Aligned_cols=45 Identities=27% Similarity=0.567 Sum_probs=35.1
Q ss_pred HHHhhhHHHHhhhhcccCcc-cccCCCCCcccccchhhHHHHHhhhChhHHHH
Q 003865 535 AVDALDPFVRKIRDEKYGWK-YGCGAKGCTKLFHAAEFVHKHLKLKHPELVIE 586 (790)
Q Consensus 535 l~e~ve~fVkk~~DEk~g~K-wrC~l~gCtKLFKgpEFVrKHI~nKH~E~Vee 586 (790)
++++ ..|++++. .|+ |.|+. |.|+|...+=...||.++|+..+..
T Consensus 42 Lsea-l~fak~n~----sWrFWiCp~--CskkF~d~~~~~~H~~~eH~~~l~P 87 (466)
T PF04780_consen 42 LSEA-LSFAKENK----SWRFWICPR--CSKKFSDAESCLSHMEQEHPAGLKP 87 (466)
T ss_pred HHHH-HHHHHhcC----ceeEeeCCc--ccceeCCHHHHHHHHHHhhhhhcCh
Confidence 3443 36777732 355 89997 9999999999999999999997754
No 18
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=71.32 E-value=2.8 Score=30.80 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=23.8
Q ss_pred ccccCCCCCcccccchhhHHHHHhhh-ChhHH
Q 003865 554 KYGCGAKGCTKLFHAAEFVHKHLKLK-HPELV 584 (790)
Q Consensus 554 KwrC~l~gCtKLFKgpEFVrKHI~nK-H~E~V 584 (790)
+|.|.+ |++-|....-+..|+..| |.+.|
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~gk~H~~~~ 32 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKGKKHKKNV 32 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHChHHHHHHH
Confidence 688997 999999999999999764 54444
No 19
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=70.25 E-value=4.3 Score=47.04 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=37.3
Q ss_pred cCcccccCCCCCcccccchhhHHHHHh-hhChhHHHHHHHHHHHHH
Q 003865 551 YGWKYGCGAKGCTKLFHAAEFVHKHLK-LKHPELVIELTSKVREEL 595 (790)
Q Consensus 551 ~g~KwrC~l~gCtKLFKgpEFVrKHI~-nKH~E~Veev~~Kv~E~~ 595 (790)
+++-+-|.| |+|.||...=+..|+. +||-+.|.++++.+.|+.
T Consensus 289 ~ge~lyC~v--CnKsFKseKq~kNHEnSKKHkenv~eLrqemEEEe 332 (508)
T KOG0717|consen 289 EGEVLYCVV--CNKSFKSEKQLKNHENSKKHKENVAELRQEMEEEE 332 (508)
T ss_pred cCCceEEee--ccccccchHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344589998 9999999999999996 579999999998887765
No 20
>PHA00616 hypothetical protein
Probab=69.60 E-value=2 Score=35.18 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.8
Q ss_pred cccCCCCCcccccchhhHHHHHhhhChh
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKHPE 582 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH~E 582 (790)
|.|+. |+|.|.-.--+.+||.+.|.+
T Consensus 2 YqC~~--CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 2 YQCLR--CGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred Cccch--hhHHHhhHHHHHHHHHHhcCC
Confidence 57875 999999999999999999988
No 21
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=60.94 E-value=5.5 Score=27.86 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=21.4
Q ss_pred cccCCCCCcccccchhhHHHHHhhhCh
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKHP 581 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH~ 581 (790)
|.|.. |.|.|....=+.+|++..|.
T Consensus 2 ~~C~~--C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 2 FECDE--CGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp EEETT--TTEEESSHHHHHHHHCTTTT
T ss_pred CCCCc--cCCccCChhHHHHHhHHhcC
Confidence 57886 99999999999999977653
No 22
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=54.32 E-value=10 Score=29.63 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=20.1
Q ss_pred cccccCCCCCcccccc----hhhHHHHHhhhCh
Q 003865 553 WKYGCGAKGCTKLFHA----AEFVHKHLKLKHP 581 (790)
Q Consensus 553 ~KwrC~l~gCtKLFKg----pEFVrKHI~nKH~ 581 (790)
.+..|.+ |.|.|++ ..=+..||.++||
T Consensus 15 ~~a~C~~--C~~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 15 KKAKCKY--CGKVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp S-EEETT--TTEE-----SSTHHHHHHHHHTTH
T ss_pred CeEEeCC--CCeEEeeCCCcHHHHHHhhhhhCc
Confidence 5789997 9999997 4788999999997
No 23
>KOG2654 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.36 E-value=30 Score=39.93 Aligned_cols=24 Identities=46% Similarity=0.859 Sum_probs=12.1
Q ss_pred hhccCCCCCCCCCCCCCCCCcCCCCCCC
Q 003865 67 ERRDDRDLDRPPPNRRGPDYYDRNRSPP 94 (790)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (790)
.++ |-|...|..+|. ..|-..|||
T Consensus 105 ~~~-dsd~spprp~rk---r~dsd~spp 128 (461)
T KOG2654|consen 105 QDR-DSDMSPPRPNRK---RTDSDMSPP 128 (461)
T ss_pred ccc-ccCCCCCCCccc---cCCCCCCCC
Confidence 444 556666644442 225555555
No 24
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.61 E-value=38 Score=38.09 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=3.8
Q ss_pred CCCCCCCC
Q 003865 113 PPPPPLPY 120 (790)
Q Consensus 113 ~~~~~~~~ 120 (790)
||++++||
T Consensus 5 pp~~~~p~ 12 (362)
T KOG3875|consen 5 PPQDSRPE 12 (362)
T ss_pred CCCCCchh
Confidence 34444555
No 25
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=48.17 E-value=43 Score=42.31 Aligned_cols=10 Identities=30% Similarity=0.242 Sum_probs=4.6
Q ss_pred cCCCCCCCCC
Q 003865 16 RKDKSSAGDD 25 (790)
Q Consensus 16 ~~~~~~~~~~ 25 (790)
+-+..||+|-
T Consensus 1135 dIs~pSAa~i 1144 (1282)
T KOG0921|consen 1135 DISRPSAADI 1144 (1282)
T ss_pred Hhcccccccc
Confidence 3344455544
No 26
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.65 E-value=48 Score=41.26 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=6.1
Q ss_pred ccccCCCCCCC
Q 003865 704 VLMPVPGAGPL 714 (790)
Q Consensus 704 ~lmpvpgagpl 714 (790)
-+=|+||.+|.
T Consensus 546 ppPPlpggag~ 556 (1102)
T KOG1924|consen 546 PPPPLPGGAGP 556 (1102)
T ss_pred CCCCCCCCCCC
Confidence 34466776553
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=44.57 E-value=18 Score=29.79 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred ccccCCCCCcccccchhhHHHHHhhhChhH
Q 003865 554 KYGCGAKGCTKLFHAAEFVHKHLKLKHPEL 583 (790)
Q Consensus 554 KwrC~l~gCtKLFKgpEFVrKHI~nKH~E~ 583 (790)
.|.|++ |+|.|.. .-+.+||..+|..-
T Consensus 2 ~f~CP~--C~~~~~~-~~L~~H~~~~H~~~ 28 (54)
T PF05605_consen 2 SFTCPY--CGKGFSE-SSLVEHCEDEHRSE 28 (54)
T ss_pred CcCCCC--CCCccCH-HHHHHHHHhHCcCC
Confidence 688986 9996665 44777999998863
No 28
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=42.54 E-value=92 Score=37.66 Aligned_cols=27 Identities=41% Similarity=0.711 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCC---CCCCc--cCccCC-CCCC
Q 003865 119 PYRDRRHSPPPR---RSPPY--KRSRRD-DGGY 145 (790)
Q Consensus 119 ~~~~rr~Sp~~~---~sPp~--kR~rrd-~~g~ 145 (790)
-||+-+|-|-.+ -.|++ +|--|+ ||||
T Consensus 782 d~regqHyp~~~~~hGGp~erHgrdsrdGwgGy 814 (940)
T KOG4661|consen 782 DYREGQHYPLSGTVHGGPSERHGRDSRDGWGGY 814 (940)
T ss_pred cchhhcccCccCccCCCchhhccCccCCCcccc
Confidence 678888888763 34543 444455 5555
No 29
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=41.72 E-value=4.6 Score=45.34 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=46.4
Q ss_pred cccccCCCCCcccccchhhHHHHHhhhChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 003865 553 WKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQP 616 (790)
Q Consensus 553 ~KwrC~l~gCtKLFKgpEFVrKHI~nKH~E~Veev~~Kv~E~~yFnNYl~DP~RP~~~pv~qq~ 616 (790)
+.++|-. |.|.|+...-++.|+++|.=-.|..... ..+..|..||+.=++++ ++|.++-
T Consensus 194 ~r~~CLy--CekifrdkntLkeHMrkK~HrrinPknr-eYDkfyiINY~ev~ks~--t~~~~e~ 252 (423)
T KOG2482|consen 194 ERLRCLY--CEKIFRDKNTLKEHMRKKRHRRINPKNR-EYDKFYIINYLEVGKSW--TIVHSED 252 (423)
T ss_pred hhheeee--eccccCCcHHHHHHHHhccCcccCCCcc-ccceEEEEeHhhcCCcc--chhhhhh
Confidence 4789986 9999999999999999997777765432 23567889999999986 5565554
No 30
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=39.00 E-value=49 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=28.2
Q ss_pred HhhhHHHHhhhhcccCcccccCCCCCcccccchhhHHHHHhhhChhHHHHHHHH
Q 003865 537 DALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSK 590 (790)
Q Consensus 537 e~ve~fVkk~~DEk~g~KwrC~l~gCtKLFKgpEFVrKHI~nKH~E~Veev~~K 590 (790)
+.+.++|..+.+. +-.|+| |+--|-..+. .+|..++.+.++.+.++
T Consensus 7 ~~~~k~i~~l~~~----~~~CPl--C~r~l~~e~~--~~li~~~~~~i~~~~~~ 52 (54)
T PF04423_consen 7 EELKKYIEELKEA----KGCCPL--CGRPLDEEHR--QELIKKYKSEIEELPEK 52 (54)
T ss_dssp HHHHHHHHHHTT-----SEE-TT--T--EE-HHHH--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC----CCcCCC--CCCCCCHHHH--HHHHHHHHHHHHhhhhc
Confidence 4556666665443 228998 9999999888 77888887777776543
No 31
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=37.90 E-value=1.7e+02 Score=32.10 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=22.3
Q ss_pred ccccCCCCCc-ccccchhhHHHHHhhhChhHHHHHH
Q 003865 554 KYGCGAKGCT-KLFHAAEFVHKHLKLKHPELVIELT 588 (790)
Q Consensus 554 KwrC~l~gCt-KLFKgpEFVrKHI~nKH~E~Veev~ 588 (790)
-|.|.+ |- |||.|+-.-+ |-..-|-|-|+.|-
T Consensus 34 hfkchi--chkkl~sgpglsi-hcmqvhketid~ip 66 (341)
T KOG2893|consen 34 HFKCHI--CHKKLFSGPGLSI-HCMQVHKETIDKIP 66 (341)
T ss_pred cceeee--ehhhhccCCCcee-ehhhhhhhhhhccc
Confidence 577876 75 5788877554 66777888777653
No 32
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=37.13 E-value=12 Score=43.23 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=23.7
Q ss_pred ccccCCCCCcccccchhhHHHHHhhhChh
Q 003865 554 KYGCGAKGCTKLFHAAEFVHKHLKLKHPE 582 (790)
Q Consensus 554 KwrC~l~gCtKLFKgpEFVrKHI~nKH~E 582 (790)
.|-|.. |.|+|+-.-|++||...-|.-
T Consensus 356 i~~C~~--C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 356 IFSCHT--CGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred eeecHH--hhhhhHHHHHHHHhHHhhhcc
Confidence 899985 999999999999998876644
No 33
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=36.67 E-value=74 Score=35.55 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=14.6
Q ss_pred CCccchhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003865 97 MPRERDRDYKRRSTVSPPPPPLPYRDRRHSPPPRRSPPY 135 (790)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr~Sp~~~~sPp~ 135 (790)
-.|.=.|-|-|+++ | ||+|+ |-|.|+.+|++
T Consensus 210 ggrr~~rs~sRsrs---p----~r~d~-~~p~Rrss~~r 240 (354)
T KOG2146|consen 210 GGRRGGRSYSRSRS---P----PREDR-YRPTRRSSPRR 240 (354)
T ss_pred ccccCccccccccC---C----ccccc-cCCcccCCccc
Confidence 34444556665553 2 55554 44444444444
No 34
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=35.11 E-value=27 Score=43.41 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=6.7
Q ss_pred CccchhhhcccCC
Q 003865 98 PRERDRDYKRRST 110 (790)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (790)
-|||+|+.+|-+|
T Consensus 326 ererer~r~RERs 338 (1194)
T KOG4246|consen 326 ERERERERDRERS 338 (1194)
T ss_pred chhhhhhhhhhcc
Confidence 3455555555554
No 35
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.74 E-value=23 Score=37.74 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=36.4
Q ss_pred HHHHHHHhhhHHHHhhhhcccCcccccCCCCCcccccchhhHHHHHhhhC
Q 003865 531 IDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKH 580 (790)
Q Consensus 531 ID~al~e~ve~fVkk~~DEk~g~KwrC~l~gCtKLFKgpEFVrKHI~nKH 580 (790)
++.-+.||-+.|..+ ..|...+-|.|.|-+||-|||..-=-+.|+-.+|
T Consensus 122 Ld~HI~E~HDs~Fqa-~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 122 LDAHILEWHDSLFQA-LVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhHHHHHHHHHHHHH-HHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 344567787777666 4667678999999999999999766666665544
No 36
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=32.60 E-value=26 Score=24.03 Aligned_cols=24 Identities=33% Similarity=0.683 Sum_probs=17.4
Q ss_pred cccCCCCCcccccchhhHHHHHhhhCh
Q 003865 555 YGCGAKGCTKLFHAAEFVHKHLKLKHP 581 (790)
Q Consensus 555 wrC~l~gCtKLFKgpEFVrKHI~nKH~ 581 (790)
|.|.. |+=... ..-+.+|++.+|+
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHHS
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhCc
Confidence 56875 886666 6779999999885
No 37
>PHA00733 hypothetical protein
Probab=31.34 E-value=34 Score=33.19 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.7
Q ss_pred ccccCCCCCcccccchhhHHHHHhhhCh
Q 003865 554 KYGCGAKGCTKLFHAAEFVHKHLKLKHP 581 (790)
Q Consensus 554 KwrC~l~gCtKLFKgpEFVrKHI~nKH~ 581 (790)
.|.|.. |+|.|....-+.+|+..||.
T Consensus 99 ~~~C~~--CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 99 SKVCPV--CGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CccCCC--CCCccCCHHHHHHHHHHhcC
Confidence 578986 99999999999999999996
No 38
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=31.18 E-value=35 Score=24.51 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=16.8
Q ss_pred ccCCCCCcccccchhhHHHHHhh
Q 003865 556 GCGAKGCTKLFHAAEFVHKHLKL 578 (790)
Q Consensus 556 rC~l~gCtKLFKgpEFVrKHI~n 578 (790)
.|+. |+.+| .++-+.||+..
T Consensus 4 ~C~~--CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 4 PCPI--CGRKF-NPDRLEKHEKI 23 (25)
T ss_pred cCCC--CCCEE-CHHHHHHHHHh
Confidence 5875 99999 88999999863
No 39
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=28.62 E-value=1.5e+02 Score=33.23 Aligned_cols=12 Identities=58% Similarity=1.077 Sum_probs=5.5
Q ss_pred CCCCcCCCCCCC
Q 003865 83 GPDYYDRNRSPP 94 (790)
Q Consensus 83 ~~~~~~~~~~~~ 94 (790)
|+--|.|.++||
T Consensus 214 ~~rs~sRsrsp~ 225 (354)
T KOG2146|consen 214 GGRSYSRSRSPP 225 (354)
T ss_pred CccccccccCCc
Confidence 344444555444
No 40
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=27.94 E-value=44 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=20.9
Q ss_pred ccCcccccCCCCCcccccchhhHHHHHhhhChhHHHHHH
Q 003865 550 KYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELT 588 (790)
Q Consensus 550 k~g~KwrC~l~gCtKLFKgpEFVrKHI~nKH~E~Veev~ 588 (790)
...++..|- .|+|.||. +.+||...|.=-.++-+
T Consensus 68 I~~d~i~cl--ecGk~~k~---LkrHL~~~~gltp~eYR 101 (132)
T PF05443_consen 68 ITPDYIICL--ECGKKFKT---LKRHLRTHHGLTPEEYR 101 (132)
T ss_dssp B-SS-EE-T--BT--EESB---HHHHHHHTT-S-HHHHH
T ss_pred cccCeeEEc--cCCcccch---HHHHHHHccCCCHHHHH
Confidence 334688997 59999999 69999999886555433
No 41
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=26.44 E-value=42 Score=23.95 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=18.3
Q ss_pred hhHHHHhhhhcccCcccccCCCCCccccc
Q 003865 539 LDPFVRKIRDEKYGWKYGCGAKGCTKLFH 567 (790)
Q Consensus 539 ve~fVkk~~DEk~g~KwrC~l~gCtKLFK 567 (790)
+..+++..+.|+ .|.|.. |.|.|+
T Consensus 2 l~~H~~~H~~~k---~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEK---PYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSS---SEEESS--SSEEES
T ss_pred HHHHhhhcCCCC---CCCCCC--CcCeeC
Confidence 455777777663 699996 999996
No 42
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=25.98 E-value=81 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=19.9
Q ss_pred cccccCCCCCcccccchhhHHHHHhhhCh
Q 003865 553 WKYGCGAKGCTKLFHAAEFVHKHLKLKHP 581 (790)
Q Consensus 553 ~KwrC~l~gCtKLFKgpEFVrKHI~nKH~ 581 (790)
..+.|++ |.+.+.. =+..||...|.
T Consensus 30 ~~v~CPi--C~~~~~~--~l~~Hl~~~H~ 54 (54)
T PF05605_consen 30 KNVVCPI--CSSRVTD--NLIRHLNSQHR 54 (54)
T ss_pred CCccCCC--chhhhhh--HHHHHHHHhcC
Confidence 3699998 9998875 56679998884
No 43
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=24.30 E-value=81 Score=32.30 Aligned_cols=13 Identities=54% Similarity=0.879 Sum_probs=11.1
Q ss_pred CccccCCCCCCCc
Q 003865 770 RSYQDLDAPEDEV 782 (790)
Q Consensus 770 r~Y~DLDaP~~~v 782 (790)
+||||+|+|.+.-
T Consensus 133 ~sYqdID~p~qp~ 145 (159)
T smart00805 133 SSYQTIDAPADPF 145 (159)
T ss_pred cccccccCCCCCC
Confidence 8999999998753
No 44
>KOG2654 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.43 E-value=1.6e+02 Score=34.51 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=5.5
Q ss_pred hhHHHHHHHhh
Q 003865 507 KLDFRWQERLR 517 (790)
Q Consensus 507 klD~~~q~rL~ 517 (790)
-|+++|..+.+
T Consensus 434 GfE~Kwf~kqN 444 (461)
T KOG2654|consen 434 GFEQKWFAKQN 444 (461)
T ss_pred chHHHHHHHhh
Confidence 34445655554
No 45
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=21.81 E-value=5.1e+02 Score=32.78 Aligned_cols=25 Identities=40% Similarity=0.849 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 003865 71 DRDLDRPPPNRRGPDYYDRNRSPPPPMP 98 (790)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (790)
-|+...+++-|.|+- --..|||||-
T Consensus 692 ~~~m~P~~~~~g~pg---~~~~PPPP~~ 716 (894)
T KOG0132|consen 692 MRHMPPPPSHRGGPG---GHGIPPPPFF 716 (894)
T ss_pred CCCCCCCCCCCCCCC---CCCCCCCccc
Confidence 334444455553322 3344555543
No 46
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=21.80 E-value=2.2e+02 Score=31.50 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=38.3
Q ss_pred CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003865 225 LMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEW 272 (790)
Q Consensus 225 lmsFKQFl~~~~DdIspeEA~~rYqEYK~ef~~~Qi~~FFe~HKdEeW 272 (790)
-+=||||+..+...++-+||...-..==..|.++|+. +|....+-.|
T Consensus 239 aIGykE~~~yl~g~~s~~e~~e~i~~~Tr~yAKRQ~T-Wfr~~~~~~w 285 (307)
T PRK00091 239 AIGYKELLAYLDGEISLEEAIEKIKQATRQYAKRQLT-WFRRQPDIHW 285 (307)
T ss_pred eecHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCee
Confidence 5779999999999999999998877777788888864 5665556667
No 47
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=21.72 E-value=31 Score=29.85 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=0.0
Q ss_pred cCCCCCcccccchhhHHHHHhhhChhHHH
Q 003865 557 CGAKGCTKLFHAAEFVHKHLKLKHPELVI 585 (790)
Q Consensus 557 C~l~gCtKLFKgpEFVrKHI~nKH~E~Ve 585 (790)
|.+ |...|...+-+.+||.++|.-.+.
T Consensus 2 C~~--C~~~f~~~~~l~~H~~~~H~~~~~ 28 (100)
T PF12756_consen 2 CLF--CDESFSSVDDLLQHMKKKHGFDIP 28 (100)
T ss_dssp -----------------------------
T ss_pred ccc--cccccccccccccccccccccccc
Confidence 775 999999999999999999987665
No 48
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=21.13 E-value=37 Score=41.81 Aligned_cols=29 Identities=28% Similarity=0.600 Sum_probs=25.1
Q ss_pred cccccCCCCCcccccchhhHHHHHhhhChhH
Q 003865 553 WKYGCGAKGCTKLFHAAEFVHKHLKLKHPEL 583 (790)
Q Consensus 553 ~KwrC~l~gCtKLFKgpEFVrKHI~nKH~E~ 583 (790)
-||-|+ +|+|-||=.+-++.||+.--+||
T Consensus 280 RKFKCt--ECgKAFKfKHHLKEHlRIHSGEK 308 (1007)
T KOG3623|consen 280 RKFKCT--ECGKAFKFKHHLKEHLRIHSGEK 308 (1007)
T ss_pred cccccc--ccchhhhhHHHHHhhheeecCCC
Confidence 489998 79999999999999998766665
No 49
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=20.59 E-value=2.1e+02 Score=30.66 Aligned_cols=47 Identities=30% Similarity=0.567 Sum_probs=40.2
Q ss_pred CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003865 225 LMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEW 272 (790)
Q Consensus 225 lmsFKQFl~~~~DdIspeEA~~rYqEYK~ef~~~Qi~~FFe~HKdEeW 272 (790)
-+=||||+..+...++-+||......==..|.++|+ .+|.....-.|
T Consensus 203 aIGYkE~~~~l~g~~~~~e~~e~i~~~TrqyAKRQ~-TWfr~~~~~~w 249 (253)
T PF01715_consen 203 AIGYKEFIDYLEGEISLEEAIERIKTNTRQYAKRQR-TWFRNQPNIHW 249 (253)
T ss_dssp STTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-HHHHTTSSEEE
T ss_pred eeehHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCee
Confidence 578999999999999999999988887888888886 56777777777
Done!