Query 003866
Match_columns 790
No_of_seqs 392 out of 1621
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 13:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1116 Sphingosine kinase, in 100.0 2E-69 4.2E-74 604.7 36.8 554 66-784 1-566 (579)
2 PLN02958 diacylglycerol kinase 100.0 4.9E-58 1.1E-62 520.0 42.8 421 162-783 24-464 (481)
3 PLN02204 diacylglycerol kinase 100.0 1.6E-54 3.5E-59 493.1 41.3 445 151-786 67-599 (601)
4 KOG1115 Ceramide kinase [Lipid 100.0 4.3E-51 9.4E-56 437.3 21.0 376 191-786 110-510 (516)
5 PRK11914 diacylglycerol kinase 100.0 1E-44 2.2E-49 388.9 32.0 291 277-783 7-302 (306)
6 PRK13059 putative lipid kinase 100.0 1.4E-42 2.9E-47 371.5 33.2 285 279-783 2-291 (295)
7 PRK13337 putative lipid kinase 100.0 7.7E-43 1.7E-47 374.5 30.8 287 279-783 2-292 (304)
8 PRK13055 putative lipid kinase 100.0 2.7E-42 5.9E-47 375.4 32.0 289 278-783 2-299 (334)
9 PRK13057 putative lipid kinase 100.0 1E-41 2.3E-46 362.8 31.4 278 282-783 1-283 (287)
10 PRK00861 putative lipid kinase 100.0 1.4E-41 3E-46 363.7 32.0 177 278-470 2-179 (300)
11 TIGR00147 lipid kinase, YegS/R 100.0 2.1E-40 4.5E-45 352.8 32.8 286 278-782 1-292 (293)
12 PRK13054 lipid kinase; Reviewe 100.0 2.3E-40 4.9E-45 354.8 32.5 181 277-470 2-183 (300)
13 TIGR03702 lip_kinase_YegS lipi 100.0 4.8E-40 1E-44 351.3 32.2 178 280-470 1-179 (293)
14 COG1597 LCB5 Sphingosine kinas 100.0 1.8E-39 3.9E-44 349.2 29.2 288 277-783 1-294 (301)
15 PRK12361 hypothetical protein; 100.0 3.7E-35 8.1E-40 338.4 30.9 179 277-471 241-424 (547)
16 PF00781 DAGK_cat: Diacylglyce 99.9 2.9E-23 6.3E-28 196.7 14.6 127 280-412 1-128 (130)
17 KOG1169 Diacylglycerol kinase 99.8 5.8E-20 1.3E-24 210.0 16.6 239 277-534 270-552 (634)
18 smart00046 DAGKc Diacylglycero 99.8 8.6E-19 1.9E-23 165.8 9.4 103 282-394 1-105 (124)
19 KOG4435 Predicted lipid kinase 99.8 1.7E-18 3.7E-23 187.0 10.2 185 277-470 59-256 (535)
20 KOG0782 Predicted diacylglycer 99.7 6.6E-17 1.4E-21 179.6 13.6 241 275-537 362-637 (1004)
21 smart00045 DAGKa Diacylglycero 99.2 5.3E-11 1.2E-15 117.4 8.1 78 422-513 2-95 (160)
22 PRK03708 ppnK inorganic polyph 98.8 4.3E-08 9.3E-13 105.4 13.2 112 279-404 1-115 (277)
23 PRK02645 ppnK inorganic polyph 98.7 2.4E-07 5.3E-12 100.9 13.7 115 277-404 2-118 (305)
24 COG3199 Predicted inorganic po 98.2 6.1E-06 1.3E-10 90.1 9.8 74 319-401 84-157 (355)
25 PRK01231 ppnK inorganic polyph 98.2 2.6E-05 5.6E-10 84.9 13.9 114 278-403 4-120 (295)
26 PF00609 DAGK_acc: Diacylglyce 98.2 3E-06 6.4E-11 84.1 6.0 101 422-534 2-118 (161)
27 PRK03378 ppnK inorganic polyph 98.0 2.9E-05 6.4E-10 84.3 9.8 110 277-403 4-121 (292)
28 KOG1170 Diacylglycerol kinase 97.9 4.6E-06 1E-10 97.8 1.4 124 278-412 194-324 (1099)
29 PRK03372 ppnK inorganic polyph 97.7 0.0006 1.3E-08 74.7 13.7 114 277-404 4-131 (306)
30 PRK02155 ppnK NAD(+)/NADH kina 97.5 0.00042 9.1E-09 75.4 10.2 114 277-404 4-122 (291)
31 PRK14077 pnk inorganic polypho 97.5 0.0013 2.9E-08 71.5 13.3 112 276-403 8-122 (287)
32 PF01513 NAD_kinase: ATP-NAD k 97.5 0.00024 5.2E-09 76.7 7.4 113 280-406 1-137 (285)
33 PRK02649 ppnK inorganic polyph 97.4 0.0019 4.1E-08 70.9 12.8 111 279-403 2-126 (305)
34 PRK01911 ppnK inorganic polyph 97.3 0.0034 7.4E-08 68.5 13.2 111 279-404 1-123 (292)
35 PRK04539 ppnK inorganic polyph 97.2 0.0025 5.5E-08 69.6 11.2 113 277-403 4-126 (296)
36 PRK03501 ppnK inorganic polyph 97.2 0.0055 1.2E-07 66.0 13.6 96 279-403 3-99 (264)
37 PRK04885 ppnK inorganic polyph 96.9 0.0089 1.9E-07 64.4 12.4 96 279-404 1-96 (265)
38 PRK14076 pnk inorganic polypho 96.8 0.01 2.2E-07 70.3 12.7 115 276-404 288-407 (569)
39 PRK14075 pnk inorganic polypho 96.7 0.03 6.5E-07 60.0 14.0 97 279-404 1-97 (256)
40 PLN02935 Bifunctional NADH kin 96.6 0.014 3.1E-07 67.6 11.2 112 277-404 193-321 (508)
41 PRK01185 ppnK inorganic polyph 96.3 0.041 8.8E-07 59.6 12.0 107 279-404 1-108 (271)
42 PRK00561 ppnK inorganic polyph 96.1 0.078 1.7E-06 57.1 13.0 100 279-412 1-101 (259)
43 KOG1170 Diacylglycerol kinase 96.0 0.0049 1.1E-07 73.3 3.6 100 420-534 613-727 (1099)
44 PLN02929 NADH kinase 95.9 0.062 1.3E-06 59.0 11.5 94 300-411 37-147 (301)
45 PLN02727 NAD kinase 95.6 0.13 2.7E-06 63.5 13.4 113 276-403 676-801 (986)
46 PRK02231 ppnK inorganic polyph 95.1 0.19 4.2E-06 54.5 11.4 91 301-403 4-101 (272)
47 PRK04761 ppnK inorganic polyph 91.9 0.97 2.1E-05 48.5 9.8 35 337-378 26-60 (246)
48 COG0061 nadF NAD kinase [Coenz 91.5 1.9 4.2E-05 46.9 11.8 111 280-404 2-114 (281)
49 KOG4180 Predicted kinase [Gene 90.6 0.23 5.1E-06 54.6 3.7 94 298-406 76-171 (395)
50 PF00609 DAGK_acc: Diacylglyce 87.4 1.8 3.8E-05 43.2 7.1 86 673-763 64-161 (161)
51 PF11711 Tim54: Inner membrane 87.2 2 4.4E-05 48.8 8.2 53 276-328 65-119 (382)
52 cd08186 Fe-ADH8 Iron-containin 87.0 3.2 7E-05 46.9 9.8 101 278-383 26-145 (383)
53 PRK13059 putative lipid kinase 85.8 0.74 1.6E-05 50.1 3.8 32 494-536 190-222 (295)
54 cd08194 Fe-ADH6 Iron-containin 85.7 4.3 9.4E-05 45.7 9.9 97 278-380 23-137 (375)
55 cd08176 LPO Lactadehyde:propan 85.5 4.4 9.5E-05 45.7 9.9 98 279-382 29-144 (377)
56 cd08197 DOIS 2-deoxy-scyllo-in 84.7 6.1 0.00013 44.5 10.5 86 279-375 24-118 (355)
57 KOG2178 Predicted sugar kinase 84.5 1.5 3.2E-05 49.8 5.3 112 277-402 92-225 (409)
58 PLN02958 diacylglycerol kinase 84.2 0.91 2E-05 53.1 3.8 31 496-536 358-389 (481)
59 PRK10624 L-1,2-propanediol oxi 83.9 7 0.00015 44.2 10.6 98 279-382 31-148 (382)
60 PF13685 Fe-ADH_2: Iron-contai 83.9 4 8.7E-05 43.9 8.2 93 277-382 18-115 (250)
61 cd08181 PPD-like 1,3-propanedi 83.8 5.8 0.00013 44.4 9.8 100 279-383 26-142 (357)
62 cd08174 G1PDH-like Glycerol-1- 83.0 7 0.00015 43.2 9.9 85 279-379 26-111 (331)
63 cd08170 GlyDH Glycerol dehydro 82.8 5.4 0.00012 44.4 9.0 89 279-380 23-116 (351)
64 cd08187 BDH Butanol dehydrogen 82.7 6.1 0.00013 44.7 9.5 99 279-382 29-145 (382)
65 cd08549 G1PDH_related Glycerol 82.4 6.5 0.00014 43.7 9.4 84 279-376 25-113 (332)
66 cd08171 GlyDH-like2 Glycerol d 82.2 4.7 0.0001 44.9 8.3 84 279-375 23-110 (345)
67 COG1454 EutG Alcohol dehydroge 81.7 14 0.0003 42.2 11.7 101 277-383 28-146 (377)
68 cd08173 Gro1PDH Sn-glycerol-1- 80.0 12 0.00027 41.5 10.5 86 279-378 26-113 (339)
69 cd08182 HEPD Hydroxyethylphosp 79.9 12 0.00027 41.9 10.6 92 279-379 24-137 (367)
70 cd08195 DHQS Dehydroquinate sy 79.4 11 0.00025 41.9 10.1 89 277-375 23-119 (345)
71 cd08190 HOT Hydroxyacid-oxoaci 79.0 9.9 0.00021 43.6 9.6 68 279-352 24-95 (414)
72 cd08178 AAD_C C-terminal alcoh 78.1 9.1 0.0002 43.5 9.0 72 278-355 21-96 (398)
73 TIGR01357 aroB 3-dehydroquinat 78.1 15 0.00032 40.9 10.4 88 278-375 20-115 (344)
74 PRK00002 aroB 3-dehydroquinate 77.7 16 0.00034 41.1 10.5 88 278-375 31-126 (358)
75 PF00731 AIRC: AIR carboxylase 77.6 15 0.00033 36.8 9.2 67 290-358 8-78 (150)
76 cd08550 GlyDH-like Glycerol_de 77.3 9.7 0.00021 42.5 8.7 84 279-375 23-109 (349)
77 PRK00843 egsA NAD(P)-dependent 76.8 14 0.0003 41.4 9.8 84 279-376 35-120 (350)
78 cd08188 Fe-ADH4 Iron-containin 76.5 17 0.00036 41.1 10.4 98 279-382 29-144 (377)
79 cd08172 GlyDH-like1 Glycerol d 75.7 9.9 0.00022 42.3 8.3 91 279-382 24-117 (347)
80 cd08199 EEVS 2-epi-5-epi-valio 75.5 17 0.00038 40.9 10.1 89 277-375 25-122 (354)
81 PRK09860 putative alcohol dehy 73.7 22 0.00047 40.4 10.4 99 279-383 32-148 (383)
82 cd08175 G1PDH Glycerol-1-phosp 73.7 22 0.00048 39.6 10.3 84 279-376 24-113 (348)
83 cd08191 HHD 6-hydroxyhexanoate 73.5 27 0.00058 39.6 11.1 98 279-382 23-138 (386)
84 PRK09423 gldA glycerol dehydro 71.8 14 0.0003 41.6 8.3 84 279-375 30-116 (366)
85 cd08180 PDD 1,3-propanediol de 71.1 20 0.00042 39.8 9.1 92 279-379 23-123 (332)
86 cd08179 NADPH_BDH NADPH-depend 70.4 25 0.00054 39.7 9.9 99 279-382 24-143 (375)
87 cd07766 DHQ_Fe-ADH Dehydroquin 69.6 27 0.00058 38.4 9.8 89 278-378 23-117 (332)
88 PRK06756 flavodoxin; Provision 69.3 22 0.00048 34.3 8.1 88 279-376 2-92 (148)
89 PRK10586 putative oxidoreducta 69.1 34 0.00073 38.7 10.5 89 279-381 35-124 (362)
90 cd08193 HVD 5-hydroxyvalerate 68.6 27 0.00058 39.4 9.7 93 279-377 27-135 (376)
91 PLN02834 3-dehydroquinate synt 68.1 28 0.0006 40.5 9.8 85 278-375 100-197 (433)
92 PF00465 Fe-ADH: Iron-containi 67.5 14 0.0003 41.4 7.1 96 279-379 22-133 (366)
93 cd08192 Fe-ADH7 Iron-containin 67.4 33 0.0007 38.6 10.0 72 279-356 25-100 (370)
94 PLN02948 phosphoribosylaminoim 65.3 1.2E+02 0.0027 36.5 14.8 137 193-378 359-499 (577)
95 cd01244 PH_RasGAP_CG9209 RAS_G 62.6 24 0.00053 32.7 6.5 59 162-238 26-96 (98)
96 cd01536 PBP1_ABC_sugar_binding 60.8 52 0.0011 33.3 9.3 85 281-375 2-88 (267)
97 PRK15454 ethanol dehydrogenase 58.8 60 0.0013 37.1 10.2 100 279-383 50-166 (395)
98 PRK14021 bifunctional shikimat 58.5 48 0.001 39.6 9.7 87 278-375 209-303 (542)
99 PF10254 Pacs-1: PACS-1 cytoso 57.6 32 0.0007 39.7 7.7 96 280-388 17-128 (414)
100 PRK06703 flavodoxin; Provision 56.7 60 0.0013 31.5 8.5 84 279-377 2-92 (151)
101 cd06295 PBP1_CelR Ligand bindi 55.5 1.1E+02 0.0024 31.7 10.8 65 300-374 30-94 (275)
102 PRK11780 isoprenoid biosynthes 55.0 63 0.0014 34.0 8.9 39 279-319 2-42 (217)
103 PF03575 Peptidase_S51: Peptid 54.9 16 0.00034 36.0 4.1 69 300-379 3-81 (154)
104 PRK15138 aldehyde reductase; P 54.7 61 0.0013 36.9 9.4 97 279-382 30-147 (387)
105 cd06310 PBP1_ABC_sugar_binding 53.6 75 0.0016 32.8 9.2 84 280-373 1-88 (273)
106 cd08177 MAR Maleylacetate redu 53.5 31 0.00067 38.3 6.7 82 279-375 24-109 (337)
107 PF07015 VirC1: VirC1 protein; 52.5 94 0.002 33.4 9.7 99 279-384 1-101 (231)
108 cd06312 PBP1_ABC_sugar_binding 52.5 88 0.0019 32.4 9.5 66 300-373 20-88 (271)
109 cd06305 PBP1_methylthioribose_ 52.0 90 0.002 32.1 9.5 59 300-359 19-79 (273)
110 cd01391 Periplasmic_Binding_Pr 50.7 1.1E+02 0.0024 30.2 9.5 59 300-359 20-81 (269)
111 PRK06203 aroB 3-dehydroquinate 50.4 88 0.0019 35.9 9.8 91 278-375 42-145 (389)
112 cd01256 PH_dynamin Dynamin ple 49.5 33 0.00072 32.3 5.0 71 157-237 19-101 (110)
113 cd08198 DHQS-like2 Dehydroquin 49.3 88 0.0019 35.7 9.5 91 278-375 30-133 (369)
114 cd01264 PH_melted Melted pleck 48.8 42 0.00091 31.4 5.7 21 218-238 78-98 (101)
115 cd08183 Fe-ADH2 Iron-containin 47.8 44 0.00095 37.7 6.8 95 279-382 23-138 (374)
116 smart00115 CASc Caspase, inter 47.7 1.9E+02 0.004 30.8 11.1 107 275-382 4-132 (241)
117 TIGR02638 lactal_redase lactal 47.5 44 0.00096 37.8 6.8 98 279-382 30-147 (379)
118 cd06282 PBP1_GntR_like_2 Ligan 47.0 1.4E+02 0.003 30.5 9.8 69 296-373 16-85 (266)
119 cd06271 PBP1_AglR_RafR_like Li 45.9 1.3E+02 0.0028 30.7 9.5 66 300-373 23-88 (268)
120 cd08169 DHQ-like Dehydroquinat 45.9 1.2E+02 0.0025 34.2 9.7 93 278-380 23-124 (344)
121 cd08185 Fe-ADH1 Iron-containin 45.7 59 0.0013 36.7 7.4 100 279-383 26-148 (380)
122 cd08551 Fe-ADH iron-containing 44.8 1.4E+02 0.0031 33.4 10.3 94 279-378 24-135 (370)
123 PRK09271 flavodoxin; Provision 44.7 35 0.00076 33.7 4.8 87 279-376 1-94 (160)
124 PRK04155 chaperone protein Hch 43.7 1.7E+02 0.0036 32.4 10.2 42 277-319 48-99 (287)
125 cd06318 PBP1_ABC_sugar_binding 43.6 1.4E+02 0.0029 31.0 9.3 66 300-373 19-86 (282)
126 cd01538 PBP1_ABC_xylose_bindin 43.0 1.3E+02 0.0029 31.6 9.3 68 300-375 19-88 (288)
127 PRK06490 glutamine amidotransf 42.7 29 0.00063 36.9 4.1 64 274-350 3-66 (239)
128 cd06167 LabA_like LabA_like pr 42.5 97 0.0021 29.6 7.4 59 301-360 56-123 (149)
129 PRK11303 DNA-binding transcrip 40.9 2E+02 0.0042 30.9 10.2 87 277-373 60-147 (328)
130 cd06281 PBP1_LacI_like_5 Ligan 40.7 2E+02 0.0044 29.6 10.0 73 296-377 16-89 (269)
131 PRK05282 (alpha)-aspartyl dipe 40.3 83 0.0018 33.7 7.1 61 278-348 31-91 (233)
132 cd01252 PH_cytohesin Cytohesin 40.2 1.2E+02 0.0025 28.8 7.4 22 217-238 89-110 (125)
133 cd01537 PBP1_Repressors_Sugar_ 40.1 2E+02 0.0044 28.8 9.7 72 299-378 18-90 (264)
134 cd06278 PBP1_LacI_like_2 Ligan 40.0 2.2E+02 0.0047 29.0 10.0 68 300-376 19-86 (266)
135 cd07025 Peptidase_S66 LD-Carbo 39.9 65 0.0014 35.1 6.4 65 283-350 2-77 (282)
136 PRK10014 DNA-binding transcrip 39.7 2.4E+02 0.0051 30.4 10.7 88 276-373 62-150 (342)
137 cd01248 PH_PLC Phospholipase C 39.2 21 0.00045 33.5 2.1 60 164-237 30-112 (115)
138 cd08189 Fe-ADH5 Iron-containin 38.1 77 0.0017 35.8 6.8 97 279-381 27-142 (374)
139 PF03358 FMN_red: NADPH-depend 38.0 1.3E+02 0.0028 28.8 7.5 77 279-359 1-95 (152)
140 cd01545 PBP1_SalR Ligand-bindi 37.6 2.2E+02 0.0048 29.1 9.7 69 296-373 16-86 (270)
141 TIGR02417 fruct_sucro_rep D-fr 37.3 2.7E+02 0.0059 29.8 10.7 87 277-373 59-146 (327)
142 cd06299 PBP1_LacI_like_13 Liga 36.7 2.7E+02 0.0059 28.4 10.2 65 300-373 19-84 (265)
143 cd01257 PH_IRS Insulin recepto 36.6 76 0.0017 29.6 5.4 48 173-238 49-99 (101)
144 cd08184 Fe-ADH3 Iron-containin 35.8 2.7E+02 0.0058 31.4 10.6 96 279-383 26-141 (347)
145 cd06297 PBP1_LacI_like_12 Liga 35.8 2.6E+02 0.0056 29.0 9.9 66 300-373 19-84 (269)
146 PRK07308 flavodoxin; Validated 35.8 1.8E+02 0.004 28.0 8.2 84 279-377 2-92 (146)
147 cd06277 PBP1_LacI_like_1 Ligan 35.7 3E+02 0.0065 28.3 10.3 57 300-359 22-79 (268)
148 cd06315 PBP1_ABC_sugar_binding 35.5 2.6E+02 0.0055 29.4 9.9 66 300-373 20-87 (280)
149 cd06320 PBP1_allose_binding Pe 35.4 1.8E+02 0.0038 30.1 8.6 84 280-373 1-88 (275)
150 cd01540 PBP1_arabinose_binding 35.4 2E+02 0.0044 29.9 9.1 66 300-373 19-85 (289)
151 cd06300 PBP1_ABC_sugar_binding 35.3 1.9E+02 0.0041 29.8 8.8 85 280-374 1-92 (272)
152 PRK10653 D-ribose transporter 35.2 2.4E+02 0.0052 29.8 9.7 87 278-374 26-114 (295)
153 cd06319 PBP1_ABC_sugar_binding 35.0 2.3E+02 0.005 29.2 9.3 66 300-373 19-86 (277)
154 cd06324 PBP1_ABC_sugar_binding 34.5 2.4E+02 0.0052 30.1 9.7 67 300-374 20-89 (305)
155 cd01235 PH_SETbf Set binding f 34.4 36 0.00079 30.4 2.9 21 218-238 78-98 (101)
156 cd06296 PBP1_CatR_like Ligand- 34.1 3.1E+02 0.0067 28.1 10.1 81 282-373 3-84 (270)
157 cd00032 CASc Caspase, interleu 34.0 1.8E+02 0.0039 30.8 8.4 71 276-347 6-85 (243)
158 cd06304 PBP1_BmpA_like Peripla 33.9 2.7E+02 0.0059 28.8 9.7 46 300-346 21-66 (260)
159 PRK11104 hemG protoporphyrinog 33.9 71 0.0015 32.4 5.2 86 279-377 1-88 (177)
160 TIGR02483 PFK_mixed phosphofru 33.8 69 0.0015 35.9 5.4 53 323-384 82-134 (324)
161 cd06341 PBP1_ABC_ligand_bindin 33.4 1.8E+02 0.0039 31.4 8.5 78 278-360 132-212 (341)
162 PRK13849 putative crown gall t 33.4 2.9E+02 0.0064 29.2 9.9 50 279-330 1-50 (231)
163 cd01539 PBP1_GGBP Periplasmic 33.4 2.4E+02 0.0051 30.2 9.4 66 300-373 19-88 (303)
164 cd07062 Peptidase_S66_mccF_lik 33.0 1.3E+02 0.0029 33.1 7.5 67 282-350 3-81 (308)
165 cd06301 PBP1_rhizopine_binding 33.0 2.4E+02 0.0053 29.0 9.1 66 300-373 19-87 (272)
166 TIGR02482 PFKA_ATP 6-phosphofr 32.9 77 0.0017 35.2 5.6 53 324-384 80-132 (301)
167 PRK13805 bifunctional acetalde 32.5 2.3E+02 0.005 35.9 10.3 95 279-378 481-605 (862)
168 smart00233 PH Pleckstrin homol 32.0 1.2E+02 0.0026 25.2 5.6 21 218-238 78-98 (102)
169 TIGR01162 purE phosphoribosyla 32.0 1.7E+02 0.0037 29.6 7.4 74 294-378 10-87 (156)
170 KOG3857 Alcohol dehydrogenase, 31.9 1.1E+02 0.0024 35.0 6.4 68 277-353 69-143 (465)
171 PF01220 DHquinase_II: Dehydro 31.5 1.5E+02 0.0033 29.5 6.8 43 298-342 30-72 (140)
172 PRK07765 para-aminobenzoate sy 31.4 2.5E+02 0.0053 29.4 8.8 47 301-351 15-61 (214)
173 cd06321 PBP1_ABC_sugar_binding 31.3 2.5E+02 0.0054 28.9 8.9 70 296-374 16-89 (271)
174 COG0371 GldA Glycerol dehydrog 31.2 1.7E+02 0.0038 33.4 8.1 93 279-384 31-125 (360)
175 cd06289 PBP1_MalI_like Ligand- 30.8 2.9E+02 0.0063 28.1 9.2 82 282-373 3-85 (268)
176 cd06270 PBP1_GalS_like Ligand 30.8 4E+02 0.0087 27.3 10.3 66 300-374 19-85 (268)
177 cd00763 Bacterial_PFK Phosphof 30.8 89 0.0019 34.9 5.7 53 323-384 80-132 (317)
178 cd00886 MogA_MoaB MogA_MoaB fa 30.4 1.8E+02 0.0038 28.7 7.2 48 300-347 23-72 (152)
179 TIGR00288 conserved hypothetic 30.1 2.7E+02 0.0059 28.3 8.4 73 302-383 71-147 (160)
180 cd01250 PH_centaurin Centaurin 30.0 50 0.0011 28.7 3.0 21 218-238 72-92 (94)
181 cd07098 ALDH_F15-22 Aldehyde d 29.7 2.7E+02 0.0059 32.3 9.7 106 283-402 151-258 (465)
182 PRK03202 6-phosphofructokinase 29.7 89 0.0019 35.0 5.5 53 323-384 81-133 (320)
183 PRK05637 anthranilate synthase 29.5 2.9E+02 0.0062 28.9 8.9 59 279-352 2-60 (208)
184 cd06303 PBP1_LuxPQ_Quorum_Sens 29.3 3.2E+02 0.007 28.6 9.4 59 300-359 20-83 (280)
185 cd06294 PBP1_ycjW_transcriptio 29.3 4.2E+02 0.0092 27.0 10.2 66 300-373 24-89 (270)
186 PRK00861 putative lipid kinase 29.1 55 0.0012 35.5 3.7 57 726-783 236-295 (300)
187 cd03169 GATase1_PfpI_1 Type 1 29.0 77 0.0017 31.6 4.5 40 336-383 76-123 (180)
188 PTZ00286 6-phospho-1-fructokin 28.9 95 0.0021 36.5 5.7 55 323-383 164-221 (459)
189 cd06316 PBP1_ABC_sugar_binding 28.8 2.9E+02 0.0063 29.1 9.0 66 300-373 19-87 (294)
190 COG1433 Uncharacterized conser 28.8 2E+02 0.0044 27.9 7.0 73 277-359 35-107 (121)
191 TIGR01754 flav_RNR ribonucleot 28.7 1.4E+02 0.003 28.7 6.0 86 279-376 1-90 (140)
192 cd06267 PBP1_LacI_sugar_bindin 28.6 3.6E+02 0.0079 27.0 9.4 65 300-373 19-84 (264)
193 cd06306 PBP1_TorT-like TorT-li 28.6 3.1E+02 0.0067 28.5 9.1 66 300-373 19-87 (268)
194 cd00363 PFK Phosphofructokinas 28.5 1.1E+02 0.0023 34.5 5.9 57 324-383 81-137 (338)
195 PLN02404 6,7-dimethyl-8-ribity 28.5 3.4E+02 0.0073 27.1 8.6 105 277-384 6-123 (141)
196 cd06317 PBP1_ABC_sugar_binding 28.3 4.2E+02 0.009 27.1 9.9 59 300-359 20-80 (275)
197 PRK09267 flavodoxin FldA; Vali 28.1 1.7E+02 0.0037 28.9 6.7 85 279-376 2-89 (169)
198 cd06313 PBP1_ABC_sugar_binding 28.0 2.3E+02 0.0049 29.6 8.0 66 300-373 19-86 (272)
199 PF04392 ABC_sub_bind: ABC tra 28.0 1.8E+02 0.0038 31.4 7.3 76 277-358 130-205 (294)
200 PF01936 NYN: NYN domain; Int 27.9 1.1E+02 0.0023 28.8 5.0 58 301-359 51-118 (146)
201 PRK05568 flavodoxin; Provision 27.8 1.9E+02 0.0041 27.5 6.7 68 279-357 2-77 (142)
202 cd00764 Eukaryotic_PFK Phospho 27.7 99 0.0022 38.6 5.9 62 322-385 465-526 (762)
203 PRK14071 6-phosphofructokinase 27.5 98 0.0021 35.2 5.4 52 325-384 97-148 (360)
204 cd01251 PH_centaurin_alpha Cen 27.5 58 0.0013 30.0 3.0 22 217-238 76-97 (103)
205 cd06273 PBP1_GntR_like_1 This 27.5 4.6E+02 0.0099 26.8 10.0 75 281-359 2-77 (268)
206 cd01246 PH_oxysterol_bp Oxyste 27.4 58 0.0013 28.1 2.9 21 218-238 69-89 (91)
207 cd06298 PBP1_CcpA_like Ligand- 27.0 4.5E+02 0.0097 26.8 9.8 57 300-358 19-76 (268)
208 cd06323 PBP1_ribose_binding Pe 26.5 3.2E+02 0.0069 27.8 8.6 66 300-373 19-86 (268)
209 cd01260 PH_CNK Connector enhan 26.4 61 0.0013 29.0 2.9 21 218-238 74-94 (96)
210 PRK14072 6-phosphofructokinase 25.9 2E+02 0.0044 33.4 7.6 59 323-384 91-149 (416)
211 PRK13869 plasmid-partitioning 25.9 2.4E+02 0.0052 32.4 8.2 48 278-327 120-167 (405)
212 cd01542 PBP1_TreR_like Ligand- 25.8 5.2E+02 0.011 26.2 10.0 57 300-358 19-76 (259)
213 PLN02564 6-phosphofructokinase 25.8 89 0.0019 37.0 4.7 56 323-384 164-222 (484)
214 TIGR00640 acid_CoA_mut_C methy 25.4 3.3E+02 0.0071 26.5 7.9 71 282-358 5-75 (132)
215 cd03147 GATase1_Ydr533c_like T 25.3 2.7E+02 0.0059 29.5 8.0 35 336-377 94-137 (231)
216 cd06268 PBP1_ABC_transporter_L 25.2 6.1E+02 0.013 25.7 10.4 77 278-359 135-213 (298)
217 PRK05670 anthranilate synthase 25.2 1.3E+02 0.0028 30.5 5.3 46 300-351 13-58 (189)
218 KOG2059 Ras GTPase-activating 25.2 47 0.001 40.7 2.4 65 160-242 589-665 (800)
219 PRK10703 DNA-binding transcrip 25.0 5.5E+02 0.012 27.6 10.5 86 279-375 60-147 (341)
220 PLN02335 anthranilate synthase 24.9 2.4E+02 0.0052 29.7 7.4 63 276-352 16-78 (222)
221 cd01239 PH_PKD Protein kinase 24.9 89 0.0019 30.2 3.7 29 160-188 19-55 (117)
222 PRK06895 putative anthranilate 24.6 3.9E+02 0.0085 27.1 8.7 54 279-348 2-55 (190)
223 PRK06830 diphosphate--fructose 24.4 1.3E+02 0.0028 35.3 5.7 58 323-383 160-217 (443)
224 PRK06555 pyrophosphate--fructo 24.1 1.3E+02 0.0028 34.9 5.6 58 324-384 101-158 (403)
225 cd06284 PBP1_LacI_like_6 Ligan 24.1 5.8E+02 0.013 25.9 10.0 65 281-348 2-67 (267)
226 cd07086 ALDH_F7_AASADH-like NA 23.6 3.4E+02 0.0074 31.7 9.1 107 283-403 164-272 (478)
227 PF00763 THF_DHG_CYH: Tetrahyd 23.5 2.9E+02 0.0062 26.2 7.0 51 292-342 40-93 (117)
228 PF00365 PFK: Phosphofructokin 23.5 78 0.0017 34.7 3.6 50 327-384 84-133 (282)
229 cd01233 Unc104 Unc-104 pleckst 23.2 74 0.0016 29.1 2.8 21 218-238 75-95 (100)
230 TIGR03590 PseG pseudaminic aci 22.8 2E+02 0.0043 31.1 6.5 27 337-375 242-268 (279)
231 COG0014 ProA Gamma-glutamyl ph 22.7 1.5E+02 0.0033 34.3 5.7 94 299-408 159-255 (417)
232 TIGR02634 xylF D-xylose ABC tr 22.7 4.6E+02 0.01 28.0 9.3 65 300-373 18-85 (302)
233 PRK11253 ldcA L,D-carboxypepti 22.6 2.7E+02 0.0059 30.9 7.6 67 281-350 3-81 (305)
234 cd06333 PBP1_ABC-type_HAAT_lik 22.6 7.8E+02 0.017 26.1 11.0 78 277-359 132-211 (312)
235 cd06311 PBP1_ABC_sugar_binding 22.5 4.6E+02 0.01 27.1 9.0 69 300-376 19-94 (274)
236 PF00532 Peripla_BP_1: Peripla 22.3 4.1E+02 0.0089 28.5 8.8 86 280-376 3-88 (279)
237 cd07104 ALDH_BenzADH-like ALDH 22.2 3.8E+02 0.0082 30.6 9.0 106 283-402 129-234 (431)
238 PRK10355 xylF D-xylose transpo 22.2 5.6E+02 0.012 28.1 10.0 86 278-373 25-112 (330)
239 cd01743 GATase1_Anthranilate_S 22.0 2.3E+02 0.0051 28.4 6.4 46 300-351 12-57 (184)
240 cd07103 ALDH_F5_SSADH_GabD Mit 22.0 4.1E+02 0.009 30.5 9.2 103 283-402 148-252 (451)
241 TIGR02955 TMAO_TorT TMAO reduc 21.9 4.8E+02 0.01 27.7 9.2 56 300-356 19-78 (295)
242 TIGR00730 conserved hypothetic 21.9 1.3E+02 0.0028 30.8 4.6 46 322-376 19-66 (178)
243 cd01265 PH_PARIS-1 PARIS-1 ple 21.9 84 0.0018 28.5 2.9 21 218-238 71-91 (95)
244 cd07130 ALDH_F7_AASADH NAD+-de 21.7 3.6E+02 0.0078 31.5 8.8 105 283-402 163-270 (474)
245 cd03132 GATase1_catalase Type 21.6 2.3E+02 0.005 26.9 6.0 66 279-349 2-75 (142)
246 COG0205 PfkA 6-phosphofructoki 21.6 79 0.0017 35.9 3.2 96 278-384 32-135 (347)
247 PRK15395 methyl-galactoside AB 21.5 6.4E+02 0.014 27.5 10.2 89 276-374 22-113 (330)
248 cd06283 PBP1_RegR_EndR_KdgR_li 21.3 6.3E+02 0.014 25.6 9.6 66 300-374 19-85 (267)
249 PF13407 Peripla_BP_4: Peripla 21.3 4.9E+02 0.011 26.6 8.8 84 284-376 3-89 (257)
250 cd06322 PBP1_ABC_sugar_binding 21.2 4.9E+02 0.011 26.6 8.8 66 300-373 19-86 (267)
251 cd06279 PBP1_LacI_like_3 Ligan 21.1 6.1E+02 0.013 26.5 9.7 63 300-374 24-86 (283)
252 COG3340 PepE Peptidase E [Amin 20.9 2.4E+02 0.0052 30.2 6.3 73 278-358 32-104 (224)
253 cd04509 PBP1_ABC_transporter_G 20.8 6.1E+02 0.013 25.7 9.4 77 278-359 136-214 (299)
254 cd01218 PH_phafin2 Phafin2 Pl 20.5 2.7E+02 0.0058 26.2 6.0 59 162-238 23-95 (104)
255 PRK01175 phosphoribosylformylg 20.5 3.9E+02 0.0085 29.1 8.1 55 278-345 3-57 (261)
256 cd00821 PH Pleckstrin homology 20.4 96 0.0021 25.6 2.8 21 218-238 74-94 (96)
257 cd00900 PH-like Pleckstrin hom 20.4 1E+02 0.0023 25.6 3.1 22 217-238 76-97 (99)
258 PF00885 DMRL_synthase: 6,7-di 20.3 3.3E+02 0.0071 27.1 6.9 78 279-358 4-93 (144)
259 CHL00101 trpG anthranilate syn 20.3 2.7E+02 0.006 28.3 6.6 45 301-351 14-58 (190)
260 TIGR01481 ccpA catabolite cont 20.3 8.4E+02 0.018 26.0 10.7 67 277-346 58-125 (329)
261 cd08196 DHQS-like1 Dehydroquin 20.3 5.4E+02 0.012 29.1 9.4 81 279-375 20-110 (346)
262 TIGR01118 lacA galactose-6-pho 20.1 1.8E+02 0.0039 29.0 5.0 65 283-384 4-72 (141)
263 PF13377 Peripla_BP_3: Peripla 20.1 4E+02 0.0086 25.1 7.3 98 277-381 8-109 (160)
264 PF04101 Glyco_tran_28_C: Glyc 20.0 1.2E+02 0.0026 29.5 3.8 43 318-377 60-102 (167)
265 PRK06774 para-aminobenzoate sy 20.0 1.8E+02 0.0039 29.5 5.2 46 301-352 14-59 (191)
No 1
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-69 Score=604.74 Aligned_cols=554 Identities=32% Similarity=0.506 Sum_probs=443.0
Q ss_pred ccccccccccccccccccCCCCCCccccccccceeeccCCCCCCCCCCCccccccccEEEeeeEeeccCCccccccCchh
Q 003866 66 VFPEKRSKKVKASSRTEQHHDGPQFDEVNKIDEHRIDIPGGAVGVGGGDEKSDLLGYVVYSGKLVLDKTKTAYDKSSSDA 145 (790)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (790)
||+++ .++ ++.+...+. ++...++|.+.||+|+++ .+++.+++|..+|.||+.++++...=.. ..
T Consensus 1 ~~~~~-~~~-~~~~~~~~~---~~~~~~p~s~~~~~~~~~-------~~~~~~~~~~~~~ag~~~~~~~~~~~~~---~s 65 (579)
T KOG1116|consen 1 VLGDG-TKK-SSTSTRDEE---DSLQVKPKSTIHPVDISA-------PAEKVDVLGKLLYAGKYVLEPRESEDGS---SS 65 (579)
T ss_pred CCccc-ccc-CCCCCcccc---ccCccCCccceeeecccC-------CCCccchhheeeccceEecccccccccc---cc
Confidence 57777 444 434444442 678889999999999963 4899999999999999999998766221 22
Q ss_pred hccchhhhhccccceeeeeecceeeecccccCCcceEEEEecCCcceEEEEEeecCCCCCccccccCCeeeeeEEEeecC
Q 003866 146 QQQSSSAQATNQDAVNAKLTSKALVWGSHVLPLDDIVSVSYNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLAS 225 (790)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~dv~~~~~~~~~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~ 225 (790)
++++...-.+...+++++++...+.|....+..-+.++++-+....+++||.|+.++. .+++|.++++++.+.
T Consensus 66 ~~~~~~~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~ 138 (579)
T KOG1116|consen 66 IQSDAATSISLSKAKEARLESGLFPLKEVMLFKNNTVSVSVSDSVSLLPIYKLGPKRK-------LLRVRSTRPFRVDCT 138 (579)
T ss_pred cccchhhhcccccchhhhhccceeeeeecccccCceeEecCccchhheehhhcccccc-------ceeeeecccccceee
Confidence 3344444458889999999999999999999999999988666789999999887664 358888899998887
Q ss_pred CHHHHHHHHhhhhcccceecccCCCcccccccccccCCCCCCCcc-ccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHH
Q 003866 226 TTEEAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPE-LIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEP 304 (790)
Q Consensus 226 ~~~~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~rpkrllVIINP~SGkG~a~kv~~~~I~p 304 (790)
-.+..+.|+.++...++...... +.. ...+.+ ++..++++++++|||||++|+|++.++|+++++|
T Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~P 205 (579)
T KOG1116|consen 139 PVEPFTLKVASFCRKQAAETSDR------------SFT-FEGLGDKSVDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEP 205 (579)
T ss_pred eeehhhcccceeehhhhhccccc------------cce-ecccccccccccCCCccEEEEECCCCCCccHHHHHHhhhhh
Confidence 77778888777644333222211 000 001112 4557889999999999999999999999999999
Q ss_pred HHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 305 IFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 305 lL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+|.++++.+++++|++++||+|++++++.. +||+|||+||||++|||+|||++|+||+.+.++|||+||+||||+||++
T Consensus 206 ll~~A~i~~evv~T~~~~HArei~rt~dl~-kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~S 284 (579)
T KOG1116|consen 206 LLSEAGISFEVVLTTRPNHAREIVRTLDLG-KYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKS 284 (579)
T ss_pred hhhhcCceEEEEEecCccHHHHHHHhhhcc-ccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHH
Confidence 999999999999999999999999999775 5899999999999999999999999999999999999999999999999
Q ss_pred hcCCC--C-hHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcC
Q 003866 385 VLGVR--D-PVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCL 461 (790)
Q Consensus 385 llG~~--d-p~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~sek~K~~lG~lrY~laal~~L~~~ 461 (790)
+++.. + +..|+..|++|..+++|+..+++. ++..+|++++++|||.|||++.+|++| |||++||.++++++|+.+
T Consensus 285 v~~~~~~~~~~~a~l~iirg~~t~~dv~~v~~~-~~~~~fSfLs~~wGlIADiDI~SEk~R-~mG~~Rf~lg~~~rl~~l 362 (579)
T KOG1116|consen 285 VLWTNGPDLPLLATLLIIRGRLTPMDVSVVEYA-GKDRHFSFLSAAWGLIADVDIESEKYR-WMGPARFTLGAFLRLIQL 362 (579)
T ss_pred hhcccCcccchHHHHHHHccCCCchheeehhhc-cCcceEEEEeeeeeeEEecccchHHHH-hhcchhhhHHHHHHHHhc
Confidence 88776 4 788999999999999999999874 334589999999999999999999999 999999999999999999
Q ss_pred CceEEEEEEecCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCCCCCCCCCCCCCCCCCceeEeccCCCCC
Q 003866 462 PKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHAST 541 (790)
Q Consensus 462 r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As~~Dgil~~sr~~DG~LDVvcs~~~~~~ 541 (790)
+.|+++|+|+|+......+.+.. . .+.++ + .-|...++.+
T Consensus 363 r~Y~gri~ylp~~~k~~~~~~~~----------~--------------~~~~~----------~------~~~~~~~a~~ 402 (579)
T KOG1116|consen 363 RKYKGRIEYLPAKGKSAEPLPAH----------E--------------LEAAD----------S------EGCLSTHADT 402 (579)
T ss_pred cCCCceEEEecccccccCcccch----------h--------------hcccc----------c------cccccccccc
Confidence 99999999998764321111000 0 01111 1 2577889999
Q ss_pred CCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCcCCCccccc
Q 003866 542 EPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDIS 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 621 (790)
+|++|.|...++..+.+.++++....+.++ ++
T Consensus 403 ~~s~~~~~~~~~~~~~~~~~s~~~e~s~~~-~~----------------------------------------------- 434 (579)
T KOG1116|consen 403 EPSEYPRLSVPKMSPKSVLRSPVSETSPVI-PE----------------------------------------------- 434 (579)
T ss_pred cccccccccccccCccccccCcccccCccc-CC-----------------------------------------------
Confidence 999999999888877666555544443322 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEec-cEEEEEEeccccccccCCccc
Q 003866 622 STLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKG-QYLGIMICNHACRTVQSAQVV 700 (790)
Q Consensus 622 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~ieG-~Fv~V~~~N~s~~~~q~d~~~ 700 (790)
++..+.+++. +++| .+|.++.| +|++++++-++. +..|..+
T Consensus 435 --------------------------------~~~~~~p~~~-~p~p---sdw~~~~~~d~~~~~a~~~sy--~~~d~~~ 476 (579)
T KOG1116|consen 435 --------------------------------DPLHLSPPLE-EPLP---SDWEVVPGVDFVCILAILLSY--LGADMKF 476 (579)
T ss_pred --------------------------------ccccCCCccc-CCCC---cceeeecCcceeeeehhhhhh--ccCCccc
Confidence 0011111111 2444 46999999 999999886552 4589999
Q ss_pred CCCCcCCCCeEEEEEE-cccChHHHHHHHHhhccCCCC--CCCcEEEEEEEe---eeeCCCC-eeecCceeecCceeeec
Q 003866 701 APRAEYDDNTMDMLLV-HGSGRLRLARFFLLLQMGRHL--SLPYVEYVKIKA---GKHTHNS-CGIDGELFPLNGQVISS 773 (790)
Q Consensus 701 AP~A~l~DG~ldLilV-~~~sR~~Llr~ll~~~~G~hl--~~p~Ve~~kvk~---~~~~~~g-~~vDGE~~~~~~~v~~~ 773 (790)
||.|.++||+|||+++ .+.+|.+|+++||+|..|+|+ ..|||.|++|++ ++.++.| ..+|||.++... +..+
T Consensus 477 ~P~A~~~dg~I~lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~~~~~~~vDGE~~~~ep-~q~~ 555 (579)
T KOG1116|consen 477 APAARPDDGLIHLVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVTPSGYFAVDGELVPLEP-LQVQ 555 (579)
T ss_pred ccccccCCCeEEEEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEecCCceEEecccEeeccc-eeEE
Confidence 9999999999999999 578999999999999999997 889999999887 5667777 899999999874 8888
Q ss_pred ccccccccccC
Q 003866 774 LLPEQCRLIGR 784 (790)
Q Consensus 774 llp~~~~l~~~ 784 (790)
++|..|.++-+
T Consensus 556 v~p~~i~~~s~ 566 (579)
T KOG1116|consen 556 VLPGLILTLSG 566 (579)
T ss_pred ecccceeEEec
Confidence 99998887755
No 2
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=4.9e-58 Score=520.02 Aligned_cols=421 Identities=28% Similarity=0.479 Sum_probs=329.8
Q ss_pred eee-ecceeeec---ccccCCc-ceEEEEecCCcceEEEEEeecCCCCCccccccCC-eeeeeEEEeecCCHHHHHHHHh
Q 003866 162 AKL-TSKALVWG---SHVLPLD-DIVSVSYNNGLRHFTVHSYPLKKGSYGLSCFIKP-RRVRKDYRFLASTTEEAIQWVG 235 (790)
Q Consensus 162 ~~~-~~~~~~~~---~~~l~l~-dv~~~~~~~~~~~~~i~~y~~~k~~~g~~~~~k~-~r~~~~~~f~~~~~~~a~~W~~ 235 (790)
+-| +.-.|-|. .+.|.|+ ||.||.... ..+.|.++..+. +|.+|+++. +|++|+|+|.+.+.++|++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 99 (481)
T PLN02958 24 LTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEG--SKIRVKTIVEKG--GGICCRGSAGALARKDFVFEPLSDESRRLWCQ 99 (481)
T ss_pred EEeccCCEEEeecCCcceEEEeeeeeEEEEeC--CEEEEEEEEecC--CcccccCCCCCceeeeEEEeCCCHHHHHHHHH
Confidence 444 33456786 4567775 788876433 346777777443 688999998 8899999999999999999999
Q ss_pred hhhcccceecccCCCcccccccccccCCCCCCCccccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE
Q 003866 236 GFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPELIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV 315 (790)
Q Consensus 236 ~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v 315 (790)
.|++ + ++. ..+|+|++||+||.||++++.++|.+.++++|+++++++++
T Consensus 100 ~~~~--~-~~~----------------------------~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v 148 (481)
T PLN02958 100 KLRD--Y-LDS----------------------------LGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTI 148 (481)
T ss_pred HHHH--H-Hhh----------------------------ccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEE
Confidence 9954 1 111 13789999999999999999998877899999999999999
Q ss_pred EEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhc---CC-CCh
Q 003866 316 VKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVL---GV-RDP 391 (790)
Q Consensus 316 ~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsll---G~-~dp 391 (790)
+.|++++||++++++++.. .+|.|||+|||||||||+|||+.+++|..+.++||||||+|||||||++++ |+ .++
T Consensus 149 ~~T~~~ghA~~la~~~~~~-~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~ 227 (481)
T PLN02958 149 QETKYQLHAKEVVRTMDLS-KYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSA 227 (481)
T ss_pred EeccCccHHHHHHHHhhhc-CCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCH
Confidence 9999999999999998654 479999999999999999999998877777789999999999999999863 54 588
Q ss_pred HHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEe
Q 003866 392 VSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYL 471 (790)
Q Consensus 392 ~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~ 471 (790)
.+|+..|++|..+++|++.|+. ++..+|++++++|||+|+|+..++++| ++|+++|.++++++|++++.|+++|+|+
T Consensus 228 ~~A~~~I~~g~~~~vDlg~v~~--~~~~~f~vn~~g~GfdAdV~~~se~kr-~lG~lrY~~~~l~~l~~~r~y~~~I~~~ 304 (481)
T PLN02958 228 TNAVLAIIRGHKCSLDVATILQ--GETKFFSVLMLAWGLVADIDIESEKYR-WMGSARLDFYGLQRILCLRQYNGRISFV 304 (481)
T ss_pred HHHHHHHHcCCceEEeEEEEEc--CCceEEEEEeeeeehhhhhhccccccc-ccchHHHHHHHHHHHHhcCCcceEEEEE
Confidence 8999999999999999999962 233455689999999999988887776 7999999999999999999999999998
Q ss_pred cCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCCCCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCC
Q 003866 472 PASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLD 551 (790)
Q Consensus 472 p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~ 551 (790)
++..... ++ .+ +..++..+
T Consensus 305 ~a~~~~~------------------------~~----------------~~-~~~~~~~~-------------------- 323 (481)
T PLN02958 305 PAPGFEA------------------------YG----------------EP-TSYNGEST-------------------- 323 (481)
T ss_pred ecccccc------------------------cc----------------cc-cccccccc--------------------
Confidence 6542110 00 00 00011111
Q ss_pred cccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCC
Q 003866 552 PKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIW 631 (790)
Q Consensus 552 ~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~ 631 (790)
.+ +..+ . . ...
T Consensus 324 ~~-------------~~~~-------~--------------------------------------~----~~~------- 334 (481)
T PLN02958 324 SK-------------EESG-------K--------------------------------------D----KQH------- 334 (481)
T ss_pred cc-------------cccc-------c--------------------------------------c----ccc-------
Confidence 00 0000 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEeccEEEEEEeccccccccCCcccCCCCcCCCCeE
Q 003866 632 DAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTM 711 (790)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~l 711 (790)
...+|..+ . ...+|+++++.|++|+++|++|+ -.+..+||.|+++||.|
T Consensus 335 ------------------~~~~~~~~--------~---~~~~w~~~~~~fl~v~v~N~~~~--Ggg~~iaP~A~l~DG~L 383 (481)
T PLN02958 335 ------------------GYQGPDVK--------L---ENLDWRTIKGPFVSVWLHNVPWG--GEDTLAAPDAKFSDGYL 383 (481)
T ss_pred ------------------cccCCccc--------c---CCccceEeecceeEEeeccCccc--CCCcccCCcccCCCCeE
Confidence 00011100 0 12479999999999999999875 47789999999999999
Q ss_pred EEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEeeeeC---------CCC-eeecCceeecCceeeeccccccccc
Q 003866 712 DMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAGKHT---------HNS-CGIDGELFPLNGQVISSLLPEQCRL 781 (790)
Q Consensus 712 dLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~~~~---------~~g-~~vDGE~~~~~~~v~~~llp~~~~l 781 (790)
||++|++++++++|++|+++..|+|++.|+|+|++++..... ..+ +++|||.+... +++++++|..-+.
T Consensus 384 Dlviv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~-p~~i~v~~~al~~ 462 (481)
T PLN02958 384 DLILIKDCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARG-NGSYKCDQKALMS 462 (481)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCC-Cceeeeccccccc
Confidence 999999999999999999999999999999999997764321 113 89999998544 7888999998888
Q ss_pred cc
Q 003866 782 IG 783 (790)
Q Consensus 782 ~~ 783 (790)
+|
T Consensus 463 ~~ 464 (481)
T PLN02958 463 YD 464 (481)
T ss_pred cC
Confidence 87
No 3
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=1.6e-54 Score=493.14 Aligned_cols=445 Identities=27% Similarity=0.411 Sum_probs=334.5
Q ss_pred hhhhccccceeeeeecceeeecccccCCcceE-E-EEecCCcceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHH
Q 003866 151 SAQATNQDAVNAKLTSKALVWGSHVLPLDDIV-S-VSYNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTE 228 (790)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~dv~-~-~~~~~~~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~ 228 (790)
..+....+.+.|+++.+.|+.+...-.-.+++ + .+.+.....|+||.+.+.++.. -.++...|.|.+++..
T Consensus 67 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~-------~~w~~~~~~f~~~d~~ 139 (601)
T PLN02204 67 ETEIKFSDVYAVEFINYGLIHSPKLSHAKGCFRERLSETQEMYRFTVHGFQRSRKEP-------CLWVLAVYTFGHKDLQ 139 (601)
T ss_pred ccceeeeeeeEEeeccccceecccccccchhhhccccccccceeeEEEEeeecccCC-------CcceeEEEeecCCCHH
Confidence 34457888999999999999876533333333 2 1234446679999988666432 2568999999999999
Q ss_pred HHHHHHhhhhcccceecccCCCcccccccccccCCCCCCCccccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHH
Q 003866 229 EAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPELIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKL 308 (790)
Q Consensus 229 ~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~ 308 (790)
.|++|++.|.. ++. ....|+|+++||+||.||+|++.+.|+ .++++|++
T Consensus 140 ~~~~w~~~l~~--~l~----------------------------~~~~r~k~llVivNP~sGkg~~~~~~~-~V~p~f~~ 188 (601)
T PLN02204 140 TCQSWVDRLNA--SLN----------------------------KEVGRPKNLLVFVHPLSGKGSGSRTWE-TVSPIFIR 188 (601)
T ss_pred HHHHHHHHHHH--HHh----------------------------hccCCCceEEEEECCCCCCcchHHHHH-HHHHHHHH
Confidence 99999999842 110 012489999999999999999999996 79999999
Q ss_pred cCCeEEEEEeCCchhHHHHHHHhhh--cCCCCceEEEeCchHHHHHHHHHHcCC--------------------------
Q 003866 309 AGFKLEVVKTTSAGHAKNLASTVDI--SSCPDGIICVGGDGIINEVLNGLLSRG-------------------------- 360 (790)
Q Consensus 309 agi~~~v~~Te~~~hA~ela~~~~~--~~~~D~IVvvGGDGTlnEVlNGL~~r~-------------------------- 360 (790)
++++++++.|++++||.++++++.. ...+|+|||||||||+|||+|||+.+.
T Consensus 189 a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 268 (601)
T PLN02204 189 AKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHE 268 (601)
T ss_pred cCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 9999999999999999999876541 235899999999999999999998421
Q ss_pred -----------CCC------------------------------CCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHH
Q 003866 361 -----------NQK------------------------------EGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIV 399 (790)
Q Consensus 361 -----------d~~------------------------------~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~Il 399 (790)
++. ....++|||||+||||+||+++.|..|+..++..|+
T Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g~~dp~taa~~Ii 348 (601)
T PLN02204 269 PNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPAGSTDAIVMCTTGERDPVTSALHII 348 (601)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCceEEEECCccHHHHHHHccCCCCHHHHHHHHH
Confidence 000 013589999999999999998889999999999999
Q ss_pred hCceeEEeEEEEEeee-------cceEEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEec
Q 003866 400 KGGLTATDVFAVEWIQ-------TGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLP 472 (790)
Q Consensus 400 kG~~~~IDlg~V~~~~-------~g~~~ffln~agiGfdAdV~~~sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p 472 (790)
.|..+++|+++|+... ....+||++++|+||+|+|+..++++| |||++||.+++++.|++++.|+++|++++
T Consensus 349 ~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi~esek~R-~mG~~rY~~~g~k~~~~~r~y~~~V~~d~ 427 (601)
T PLN02204 349 LGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKYR-WMGPKRYDYAGTKVFLKHRSYEAEVAYLE 427 (601)
T ss_pred hCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHHHHhhhhc-ccchHHHHHHHHHHHHhCCCceEEEEECC
Confidence 9999999999996311 112368899999999999999998887 79999999999999999999999999975
Q ss_pred CCccccccccccccceeecCceEEEEecCCCCCCCccCCCCCCCCCCCCCCCCCCCCc----eeEeccCCCCCCCccccc
Q 003866 473 ASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDP----DTTCSSTHASTEPSEYVR 548 (790)
Q Consensus 473 ~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As~~Dgil~~sr~~DG~L----DVvcs~~~~~~~~~~~~~ 548 (790)
...... . .. .+ .|.-. .....+..+ ..+|...
T Consensus 428 ~~~~~~--~------------~~---~~---------~~~~~-------~~~~~~~~~c~~~c~Vcn~~----------- 463 (601)
T PLN02204 428 TESEKS--K------------AS---SE---------ARKRT-------GPKKSEKIVCRTNCSVCNTK----------- 463 (601)
T ss_pred eEeeec--c------------cc---cc---------ccccc-------ccccccchhhhhheeeeccc-----------
Confidence 321100 0 00 00 00000 000000000 0011000
Q ss_pred CCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCcCCCcccccCCCCCCC
Q 003866 549 GLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPG 628 (790)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 628 (790)
.... +
T Consensus 464 -----------------------------------------------------------------~~~~-~--------- 468 (601)
T PLN02204 464 -----------------------------------------------------------------VSTN-S--------- 468 (601)
T ss_pred -----------------------------------------------------------------cccc-c---------
Confidence 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEeccEEEEEEeccccccccCCcccCCCCcCCC
Q 003866 629 PIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDD 708 (790)
Q Consensus 629 p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~D 708 (790)
|. + .|. . -..+.+|++++|.|+++.+++++|+|.+++..++|.|+++|
T Consensus 469 ~~-------------------~--~p~----------~-~~~~~~W~~~~G~f~~vG~~iis~~~~rap~gl~pdA~l~D 516 (601)
T PLN02204 469 PS-------------------T--TPN----------S-CPEETRWLRSKGRFLSVGAAIISNRNERAPDGLVADAHLSD 516 (601)
T ss_pred cc-------------------c--ccc----------c-ccccccceeecCceEEeeeecccccccccccccCCCCcCCC
Confidence 00 0 000 0 01236899999999999999999999888889999999999
Q ss_pred CeEEEEEEcccChHHHHHHHHhhc-c-CCCCCCCcEEEEEEEeeeeCC---CC-eeecCceeecCceeeecccccccccc
Q 003866 709 NTMDMLLVHGSGRLRLARFFLLLQ-M-GRHLSLPYVEYVKIKAGKHTH---NS-CGIDGELFPLNGQVISSLLPEQCRLI 782 (790)
Q Consensus 709 G~ldLilV~~~sR~~Llr~ll~~~-~-G~hl~~p~Ve~~kvk~~~~~~---~g-~~vDGE~~~~~~~v~~~llp~~~~l~ 782 (790)
|.|||++|++++++.+|++|+++- . |+|+++|||+|++++...+.. .. |++|||++... +++++++|...+|+
T Consensus 517 G~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~~~~~~niDGE~~~~~-~v~v~V~~~al~lf 595 (601)
T PLN02204 517 GFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFGDESVWNLDGEIFQAH-QLSAQVFRGLVNLF 595 (601)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEEECCCCceEEeCCCcCCCc-cEEEEEEcCeeEEE
Confidence 999999999999999999999885 3 699999999999988765422 22 99999998654 78888888888887
Q ss_pred cCCC
Q 003866 783 GRSH 786 (790)
Q Consensus 783 ~~~~ 786 (790)
.|-+
T Consensus 596 a~g~ 599 (601)
T PLN02204 596 ASGP 599 (601)
T ss_pred ecCC
Confidence 6643
No 4
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-51 Score=437.28 Aligned_cols=376 Identities=30% Similarity=0.505 Sum_probs=314.5
Q ss_pred ceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHHHhhhhcccceecccCCCcccccccccccCCCCCCCcc
Q 003866 191 RHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPE 270 (790)
Q Consensus 191 ~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~ 270 (790)
..||+|.+..+. |.++..+.++|.+.+.++|+.|.+.|+. .++.
T Consensus 110 y~ftvh~v~~~~---------k~~W~laq~tf~~~~~q~c~~W~~~l~~--~L~k------------------------- 153 (516)
T KOG1115|consen 110 YRFTVHGVQSSP---------KELWNLAQFTFGHMDLQTCQSWMDQLNY--SLIK------------------------- 153 (516)
T ss_pred eEEEEEEEEcCc---------hhhcchhcceEecccHHHHHHHHHHHHH--HHHH-------------------------
Confidence 349999887543 3567889999999999999999998842 1111
Q ss_pred ccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--CCCCceEEEeCchH
Q 003866 271 LIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDGIICVGGDGI 348 (790)
Q Consensus 271 ~~~~~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~--~~~D~IVvvGGDGT 348 (790)
...|||.++|||||++|+|++.++|+. |.++|-.+.+.++++.|++++||++.+.++..+ ..||+||+|||||.
T Consensus 154 ---~~~RPknllvFinPfgGkG~g~ki~e~-V~~~F~la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~ 229 (516)
T KOG1115|consen 154 ---EVERPKNLLVFINPFGGKGNGSKIWET-VSKIFILAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGF 229 (516)
T ss_pred ---HhcCCccEEEEEcCCCCCCcccchhhh-hhhhEEeeecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchh
Confidence 124899999999999999999999975 999999999999999999999999999887522 23899999999999
Q ss_pred HHHHHHHHHcCCCCCCC------------CCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeec
Q 003866 349 INEVLNGLLSRGNQKEG------------ISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQT 416 (790)
Q Consensus 349 lnEVlNGL~~r~d~~~~------------~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~ 416 (790)
+||++||++.+.+...+ ..+.+||||+||+|.+..+..|.+|++..|..|+-|...-+|++.|.. .+
T Consensus 230 FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D~~TSAlHI~lG~~l~vDVctVht-~~ 308 (516)
T KOG1115|consen 230 FNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTRDPVTSALHIILGRKLFVDVCTVHT-IE 308 (516)
T ss_pred HHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCCccccceeeeEeccceeeeeeeeee-cc
Confidence 99999999877443211 246799999999999999889999999999999999999999999984 23
Q ss_pred ceEEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEE
Q 003866 417 GVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYT 496 (790)
Q Consensus 417 g~~~ffln~agiGfdAdV~~~sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l 496 (790)
.-.+|+++.+|+||.+||...+|||| |||+.||.+++++++++++.|+++|.|+|+..+.
T Consensus 309 kLiRysaSa~gYGFyGDvl~dSEKYR-WmGp~RYDfsglKtflkH~~YegeVsFlpa~sen------------------- 368 (516)
T KOG1115|consen 309 KLIRYSASAAGYGFYGDVLSDSEKYR-WMGPKRYDFSGLKTFLKHRSYEGEVSFLPAESEN------------------- 368 (516)
T ss_pred hheeeehhhhcccccchhhhhhhhhh-ccCchhhhhHHHHHHHhccccceEEEecccccCC-------------------
Confidence 34678899999999999999999998 9999999999999999999999999997643211
Q ss_pred EEecCCCCCCCccCCCCCCCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCC
Q 003866 497 DIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLP 576 (790)
Q Consensus 497 ~V~Nr~~GGG~~iaP~As~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~ 576 (790)
.+.||.
T Consensus 369 -------------------------------------------------------------------~~qe~~------- 374 (516)
T KOG1115|consen 369 -------------------------------------------------------------------PCQEPC------- 374 (516)
T ss_pred -------------------------------------------------------------------chhccc-------
Confidence 000100
Q ss_pred CCCCCCCCCCcccccccccccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003866 577 LSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSD 656 (790)
Q Consensus 577 ~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~ 656 (790)
+ +|+
T Consensus 375 ----~--------------~g~---------------------------------------------------------- 378 (516)
T KOG1115|consen 375 ----P--------------SGA---------------------------------------------------------- 378 (516)
T ss_pred ----c--------------ccC----------------------------------------------------------
Confidence 0 000
Q ss_pred CcccCcccCCCCCCCCCcEEEeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhh-ccCC
Q 003866 657 DVEAGTKKEGIPRYEENWIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLL-QMGR 735 (790)
Q Consensus 657 ~~~~~~~~~~~p~~~~~W~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~-~~G~ 735 (790)
......+.|+.+.|+|+.|+.++++|.|...+.++||.++++||.+||++++++||+.+++||.+. ..++
T Consensus 379 ---------~~~~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrGLaP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~ 449 (516)
T KOG1115|consen 379 ---------SLHTRSKTWQRNTGRFLKVLCRAIPCICNSKPRGLAPSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNER 449 (516)
T ss_pred ---------CcccCcchhhhhhhheeeeeEeeccccccCCCCCcCCccccCCCccceeeeecccchHHHHHHHHHhhccc
Confidence 001123689999999999999999999999999999999999999999999999999999999999 5689
Q ss_pred CCCCCcEEEEEEEee--------ee-CCCC-eeecCceeecCceeeecccccccccccCCC
Q 003866 736 HLSLPYVEYVKIKAG--------KH-THNS-CGIDGELFPLNGQVISSLLPEQCRLIGRSH 786 (790)
Q Consensus 736 hl~~p~Ve~~kvk~~--------~~-~~~g-~~vDGE~~~~~~~v~~~llp~~~~l~~~~~ 786 (790)
+++.+||+.+.++-+ .. +.-+ |++|||+++...++|.||+|+..+|.||..
T Consensus 450 qfdf~fVe~y~v~~v~~~s~~~d~~~~d~~eWN~DGeile~p~~lh~rlHpqLIslfgr~~ 510 (516)
T KOG1115|consen 450 QFDFLFVEAYLVDGVLHLSLIKDCSRPDYLEWNLDGEILEQPKPLHFRLHPQLISLFGRDA 510 (516)
T ss_pred ccCceeeeeeeeeeEEEEeecCCCCCCCcceeccCcchhcCCcceEEEechhhHhHhccch
Confidence 999999999886642 11 1222 999999999988999999999999999974
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1e-44 Score=388.91 Aligned_cols=291 Identities=25% Similarity=0.347 Sum_probs=239.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
.+++++||+||.||++++.+.|+ .+.+.|+++++++.++.|+.++|+.++++++... .+|.||++|||||||||+|+|
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~-~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~-~~d~vvv~GGDGTi~evv~~l 84 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAE-RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAK-GTDALVVVGGDGVISNALQVL 84 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHH-HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhc-CCCEEEEECCchHHHHHhHHh
Confidence 46899999999999999888885 5677999999999999999999999999987643 479999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcCC-C-ChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccc
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV-R-DPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDV 434 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~-~-dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV 434 (790)
+.. ++||||||+||+|||||+ +|+ . ++.+++..|..|.++++|+++|+.. ++..+||+|++++||+|+|
T Consensus 85 ~~~-------~~~lgiiP~GT~NdfAr~-lg~~~~~~~~a~~~i~~g~~~~iDlg~v~~~-~~~~~~f~n~~~~G~~a~v 155 (306)
T PRK11914 85 AGT-------DIPLGIIPAGTGNDHARE-FGIPTGDPEAAADVIVDGWTETVDLGRIQDD-DGIVKWFGTVAATGFDSLV 155 (306)
T ss_pred ccC-------CCcEEEEeCCCcchhHHH-cCCCCCCHHHHHHHHHcCCceEEEEEEEecC-CCCcEEEEEEEeeehHHHH
Confidence 754 589999999999999997 665 3 6899999999999999999999742 2223577999999999999
Q ss_pred hhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEec-CCCCCCCccCCCC
Q 003866 435 LELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMR-KSKNEGMPRASSL 513 (790)
Q Consensus 435 ~~~sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~N-r~~GGG~~iaP~A 513 (790)
....+++|+.+|+++|++++++.++++++++++|++++. +.++....++.|+| ++||||+
T Consensus 156 ~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~-------------~~~~~~~~~~~v~N~~~~GG~~------ 216 (306)
T PRK11914 156 TDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVLDGT-------------EEIVTDLTLAAFGNTRSYGGGM------ 216 (306)
T ss_pred HHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEEeCC-------------eEEEeeEEEEEEeCcccccCCc------
Confidence 987788876689999999999999999999998887420 11222223344444 4444444
Q ss_pred CCCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccc
Q 003866 514 SSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTD 593 (790)
Q Consensus 514 s~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~ 593 (790)
T Consensus 217 -------------------------------------------------------------------------------- 216 (306)
T PRK11914 217 -------------------------------------------------------------------------------- 216 (306)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCC
Q 003866 594 KWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEEN 673 (790)
Q Consensus 594 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~ 673 (790)
T Consensus 217 -------------------------------------------------------------------------------- 216 (306)
T PRK11914 217 -------------------------------------------------------------------------------- 216 (306)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEeeeeC
Q 003866 674 WIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAGKHT 753 (790)
Q Consensus 674 W~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~~~~ 753 (790)
.++|.|.++||.||+++|+..++++++++|+.+..|+|++.|.|++++.+.....
T Consensus 217 -------------------------~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~ 271 (306)
T PRK11914 217 -------------------------LICPNADHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVE 271 (306)
T ss_pred -------------------------eeCCCCcCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEE
Confidence 3455577889999999999999999999999999999999999999997654332
Q ss_pred --CCCeeecCceeecCceeeeccccccccccc
Q 003866 754 --HNSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 754 --~~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
...+++|||.+.- .+++++++|...+++-
T Consensus 272 ~~~~~~~~DGE~~~~-~p~~i~v~p~al~v~v 302 (306)
T PRK11914 272 CPGINAYADGDFACP-LPAEISAVPGALQILR 302 (306)
T ss_pred cCCcceecCCCcCCC-CceEEEEEcCeEEEEC
Confidence 2348999999864 4899999998888775
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.4e-42 Score=371.55 Aligned_cols=285 Identities=21% Similarity=0.283 Sum_probs=234.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
++++||+||.||++++.+.|+ .+++.|.++|+++.++.|+..+++ +.++++.. ..+|.||++|||||||||+|+|++
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~-~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~-~~~d~vi~~GGDGTv~evv~gl~~ 78 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELD-KVIRIHQEKGYLVVPYRISLEYDL-KNAFKDID-ESYKYILIAGGDGTVDNVVNAMKK 78 (295)
T ss_pred cEEEEEECCcccchhHHHHHH-HHHHHHHHCCcEEEEEEccCcchH-HHHHHHhh-cCCCEEEEECCccHHHHHHHHHHh
Confidence 689999999999999877774 688899999999988888776654 55555543 347999999999999999999996
Q ss_pred CCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhhh
Q 003866 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLELS 438 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~s 438 (790)
.. .++||||||+||||||||++..+.++.+|+..|+.|+.+++|+++++ + +||+|++++||+|+|+...
T Consensus 79 ~~-----~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~v~----~--~~f~n~~~~G~~a~v~~~~ 147 (295)
T PRK13059 79 LN-----IDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPKKVDLGKIN----D--KYFINVASTGLFTDVSQKT 147 (295)
T ss_pred cC-----CCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcEEeeEEEEC----C--EEEEEEEeeeechhhhhhc
Confidence 53 25899999999999999985445799999999999999999999996 2 4789999999999999764
Q ss_pred -HHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCCCCC
Q 003866 439 -EKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSID 517 (790)
Q Consensus 439 -ek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As~~D 517 (790)
++.|+.+|.++|++++++.+++++.|+++|+++.
T Consensus 148 ~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~--------------------------------------------- 182 (295)
T PRK13059 148 DVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTSEE--------------------------------------------- 182 (295)
T ss_pred cHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEECC---------------------------------------------
Confidence 3566688999999999999999988888877621
Q ss_pred CCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccccc
Q 003866 518 SIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTG 597 (790)
Q Consensus 518 gil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~~ 597 (790)
T Consensus 183 -------------------------------------------------------------------------------- 182 (295)
T PRK13059 183 -------------------------------------------------------------------------------- 182 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEE
Q 003866 598 LTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVK 677 (790)
Q Consensus 598 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~i 677 (790)
+++
T Consensus 183 -----------------------------------------------------------------------------~~~ 185 (295)
T PRK13059 183 -----------------------------------------------------------------------------VNF 185 (295)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 011
Q ss_pred eccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCc-EEEEEEEeeee---C
Q 003866 678 KGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPY-VEYVKIKAGKH---T 753 (790)
Q Consensus 678 eG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~-Ve~~kvk~~~~---~ 753 (790)
++++++++++|..++ ....++|.|.++||.||++++++.++++++++|+.+..|+|...|. |++++++.... .
T Consensus 186 ~~~~~~~~v~N~~~~---Gg~~~~p~a~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~ 262 (295)
T PRK13059 186 DGDMYLMLVFNGQTA---GNFNLAYKAEVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNE 262 (295)
T ss_pred EeeEEEEEEEcCccc---cCcccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCC
Confidence 334555666665532 2356788899999999999999999999999999999999999999 99999765433 2
Q ss_pred CCCeeecCceeecCceeeeccccccccccc
Q 003866 754 HNSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 754 ~~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
+.-+++|||++. ..++..+++|..++++.
T Consensus 263 ~~~~~~DGE~~~-~~p~~i~v~p~al~v~~ 291 (295)
T PRK13059 263 EIVTDIDGERGP-DFPLNIECIKGGLKVLG 291 (295)
T ss_pred CceEEeCCCcCC-CCcEEEEEecCeeEEEe
Confidence 223799999876 45899999999999886
No 7
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=7.7e-43 Score=374.51 Aligned_cols=287 Identities=24% Similarity=0.313 Sum_probs=236.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+|++||+||+||++++.+.|. .+.+.|++++++++++.|++.+|+.++++++... .+|.||++|||||||||+|+|+.
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~-~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~-~~d~vvv~GGDGTl~~vv~gl~~ 79 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLP-DVLQKLEQAGYETSAHATTGPGDATLAAERAVER-KFDLVIAAGGDGTLNEVVNGIAE 79 (304)
T ss_pred ceEEEEECCcccchhHHHHHH-HHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhc-CCCEEEEEcCCCHHHHHHHHHhh
Confidence 689999999999998777785 5677899999999999999999999999987643 47999999999999999999997
Q ss_pred CCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhh-
Q 003866 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL- 437 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~- 437 (790)
++. .+||||||+||||+|||++..+.++.+|+..|..|..+++|+++++. +||+|++++||+++|+..
T Consensus 80 ~~~-----~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~vn~------~~fln~~g~G~~a~v~~~~ 148 (304)
T PRK13337 80 KEN-----RPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHTVPVDIGKANN------RYFINIAGGGRLTELTYEV 148 (304)
T ss_pred CCC-----CCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCeEEEEEEEECC------EEEEeeehhhHHHHHHHhc
Confidence 642 48999999999999999854457899999999999999999999972 477999999999999854
Q ss_pred hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCCCCC
Q 003866 438 SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSID 517 (790)
Q Consensus 438 sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As~~D 517 (790)
.++.|+++|.++|++++++.+.+++.++++|+++. +..
T Consensus 149 ~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~--------------~~~---------------------------- 186 (304)
T PRK13337 149 PSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEYDG--------------KLF---------------------------- 186 (304)
T ss_pred CHHHhcCcccHHHHHHHHHHHhhCCCceEEEEECC--------------eEE----------------------------
Confidence 45667789999999999999998888888877621 111
Q ss_pred CCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccccc
Q 003866 518 SIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTG 597 (790)
Q Consensus 518 gil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~~ 597 (790)
T Consensus 187 -------------------------------------------------------------------------------- 186 (304)
T PRK13337 187 -------------------------------------------------------------------------------- 186 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEE
Q 003866 598 LTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVK 677 (790)
Q Consensus 598 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~i 677 (790)
T Consensus 187 -------------------------------------------------------------------------------- 186 (304)
T PRK13337 187 -------------------------------------------------------------------------------- 186 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEee---eeCC
Q 003866 678 KGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAG---KHTH 754 (790)
Q Consensus 678 eG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~---~~~~ 754 (790)
++++.+++++|+.. ......++|.|.++||.||+++++..++++++++|+.+..|+|+..|+|++++++.. ...+
T Consensus 187 ~~~~~~~~v~n~~~--~gg~~~~~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~ 264 (304)
T PRK13337 187 QGEIMLFLLGLTNS--VGGFEKLAPDASLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFDK 264 (304)
T ss_pred EeEEEEEEEEcCcc--cCCccccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCCC
Confidence 22333444444331 122334566688899999999999999999999999999999999999999996543 2333
Q ss_pred CCeeecCceeecCceeeeccccccccccc
Q 003866 755 NSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 755 ~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
..+++|||.+.. .++.++++|..-+++-
T Consensus 265 ~~~~iDGE~~~~-~p~~i~v~p~al~v~~ 292 (304)
T PRK13337 265 MQLNLDGEYGGK-LPAEFENLYRHIEVFV 292 (304)
T ss_pred CeEEeCCCcCCC-CCEEEEEecceEEEEe
Confidence 348999999974 4899999998888775
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.7e-42 Score=375.43 Aligned_cols=289 Identities=24% Similarity=0.333 Sum_probs=235.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC-CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT-SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te-~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
++|++||+||.||++++.+.| ..++++|++++++++++.|+ .++|+.++++++... .+|.||++|||||||||+|+|
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~-~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~-~~d~vvv~GGDGTl~evvngl 79 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNV-ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEA-GFDLIIAAGGDGTINEVVNGI 79 (334)
T ss_pred CceEEEEECCCCCchhHHHHH-HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhc-CCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999988888 47889999999999988776 568999999987644 479999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcCCC-ChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccch
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVR-DPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~-dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~ 435 (790)
+..+. .+||||||+||||+|||++..+. ++.+++..|++|+++++|++.++. + +||+|++++||+|+|+
T Consensus 80 ~~~~~-----~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~~vD~g~v~~---~--~~F~n~ag~G~da~v~ 149 (334)
T PRK13055 80 APLEK-----RPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTIKMDIGRANE---D--KYFINIAAGGSLTELT 149 (334)
T ss_pred hhcCC-----CCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcEEeeEEEECC---C--cEEEEEehhccchHHH
Confidence 97532 48999999999999999854456 799999999999999999999951 2 4779999999999998
Q ss_pred hh-hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCC
Q 003866 436 EL-SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (790)
Q Consensus 436 ~~-sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As 514 (790)
.. .+..|+++|+++|++++++.+++++.|+++|++++ ...
T Consensus 150 ~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~d~--------------~~~------------------------- 190 (334)
T PRK13055 150 YSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITYDE--------------GVF------------------------- 190 (334)
T ss_pred HhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEECC--------------EEE-------------------------
Confidence 53 45667789999999999999999999999888731 001
Q ss_pred CCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003866 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (790)
Q Consensus 515 ~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~ 594 (790)
T Consensus 191 -------------------------------------------------------------------------------- 190 (334)
T PRK13055 191 -------------------------------------------------------------------------------- 190 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003866 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (790)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W 674 (790)
T Consensus 191 -------------------------------------------------------------------------------- 190 (334)
T PRK13055 191 -------------------------------------------------------------------------------- 190 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhcc-CCCCCCCcEEEEEEEeeee-
Q 003866 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQM-GRHLSLPYVEYVKIKAGKH- 752 (790)
Q Consensus 675 ~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~-G~hl~~p~Ve~~kvk~~~~- 752 (790)
++++.+++++|..+ ......++|.|.++||.||+++++..++++++++|+.+.. |+|...|+|+|++++....
T Consensus 191 ---~~~~~~~~v~n~~~--~Gg~~~~~p~a~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~ 265 (334)
T PRK13055 191 ---EGKISMFFLALTNS--VGGFEQIVPDAKLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIE 265 (334)
T ss_pred ---EEEEEEEEEEcCcc--cCCccccCCCCcCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEE
Confidence 22333344444332 1233345777889999999999999999999999999988 9999999999999765332
Q ss_pred --CC--CCeeecCceeecCceeeeccccccccccc
Q 003866 753 --TH--NSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 753 --~~--~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
.+ ..+++|||++. ..++.++++|...+++-
T Consensus 266 ~~~~~~~~~~iDGE~~~-~~pv~i~v~p~al~v~~ 299 (334)
T PRK13055 266 PLGDDRLMVNLDGEYGG-DAPMTFENLKQHIEFFA 299 (334)
T ss_pred eCCCCcceEeeCCCcCC-CCcEEEEEEcCeEEEEe
Confidence 22 23899999985 45899999999888875
No 9
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=1e-41 Score=362.81 Aligned_cols=278 Identities=23% Similarity=0.339 Sum_probs=228.7
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCC
Q 003866 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGN 361 (790)
Q Consensus 282 lVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d 361 (790)
+||+||.||+++ +.+ ..++..|+++|+++.+..|+.++|+.++++++. ..+|.||++|||||||||+|+|+.+
T Consensus 1 ~~I~Np~sg~~~--~~~-~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~--~~~d~iiv~GGDGTv~~v~~~l~~~-- 73 (287)
T PRK13057 1 LLLVNRHARSGR--AAL-AAARAALEAAGLELVEPPAEDPDDLSEVIEAYA--DGVDLVIVGGGDGTLNAAAPALVET-- 73 (287)
T ss_pred CEEECCCCCCcc--hhH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH--cCCCEEEEECchHHHHHHHHHHhcC--
Confidence 489999999887 356 478889999999999999999999999999853 3479999999999999999999865
Q ss_pred CCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhhh-HH
Q 003866 362 QKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLELS-EK 440 (790)
Q Consensus 362 ~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~s-ek 440 (790)
++|||+||+||||||||++..+.++.+++..|..|..+++|+++++ + +||+|++++||+|+|+... ++
T Consensus 74 -----~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~~vD~g~~~----~--~~f~n~~g~G~da~v~~~~~~~ 142 (287)
T PRK13057 74 -----GLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQVRRIDLGWVN----G--HYFFNVASLGLSAELARRLTKE 142 (287)
T ss_pred -----CCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEC----C--EEEEEEEecCccHHHHHHhhHH
Confidence 4899999999999999985445789999999999999999999996 2 4789999999999998643 44
Q ss_pred HHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEec-CCCCCCCccCCCCCCCCCC
Q 003866 441 YQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMR-KSKNEGMPRASSLSSIDSI 519 (790)
Q Consensus 441 ~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~N-r~~GGG~~iaP~As~~Dgi 519 (790)
.|+.+|+++|++++++.++++++++++|+.+. +..+....++.|+| ++|||||
T Consensus 143 ~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~d~--------------~~~~~~~~~~~v~N~~~~gg~~------------ 196 (287)
T PRK13057 143 LKRRWGTLGYAIAALRVLRRSRPFTAEIEHDG--------------RTERVKTLQVAVGNGRYYGGGM------------ 196 (287)
T ss_pred hhccCChhHHHHHHHHHHhhCCCeEEEEEECC--------------EEEEEEEEEEEEecCcccCCCc------------
Confidence 55678999999999999999998888887631 11122222334444 4444444
Q ss_pred CCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccccccc
Q 003866 520 MTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLT 599 (790)
Q Consensus 520 l~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~~~~ 599 (790)
T Consensus 197 -------------------------------------------------------------------------------- 196 (287)
T PRK13057 197 -------------------------------------------------------------------------------- 196 (287)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEec
Q 003866 600 VAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKG 679 (790)
Q Consensus 600 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~ieG 679 (790)
T Consensus 197 -------------------------------------------------------------------------------- 196 (287)
T PRK13057 197 -------------------------------------------------------------------------------- 196 (287)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEeeee---CCCC
Q 003866 680 QYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAGKH---THNS 756 (790)
Q Consensus 680 ~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~~~---~~~g 756 (790)
.++|.|.++||.|||++|+..++++++++|..+..|+|...|.|.+++.+.... .+..
T Consensus 197 -------------------~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~ 257 (287)
T PRK13057 197 -------------------TVAHDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRKPRP 257 (287)
T ss_pred -------------------ccCCCCCCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCCCcE
Confidence 445667788999999999999999999999999999999999999999765432 3334
Q ss_pred eeecCceeecCceeeeccccccccccc
Q 003866 757 CGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 757 ~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
+++|||.+.. .++.++++|...+++-
T Consensus 258 ~~~DGE~~~~-~p~~i~v~p~al~v~~ 283 (287)
T PRK13057 258 INTDGELTTY-TPAHFRVLPKALRVLA 283 (287)
T ss_pred EeeCCccCCC-CCEEEEEECCeEEEEc
Confidence 8999999864 4899999999998876
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.4e-41 Score=363.74 Aligned_cols=177 Identities=26% Similarity=0.418 Sum_probs=155.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+++++||+||.||++++.+.| +.++..|++. ++++++.|+..+|+.++++++... .+|.||++|||||||||+|+|+
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~-~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~~-~~d~vv~~GGDGTl~evv~~l~ 78 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDL-ALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIER-GAELIIASGGDGTLSAVAGALI 78 (300)
T ss_pred CceEEEEECCCCCCCchhhhH-HHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHhc-CCCEEEEECChHHHHHHHHHHh
Confidence 468999999999999987777 4678888874 899999999999999999988654 4799999999999999999998
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhh
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL 437 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~ 437 (790)
.+ ++|||+||+||||||||++..+.++.+|+..|.+|..+++|++.++ + +||+|++++||+|+|+..
T Consensus 79 ~~-------~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~iDlg~vn----~--~~fin~a~~G~~a~v~~~ 145 (300)
T PRK00861 79 GT-------DIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTRRVDVAYCN----G--QPMILLAGIGFEAETVEE 145 (300)
T ss_pred cC-------CCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcEEeeEEEEC----C--EEEEEEEeccHHHHHHHH
Confidence 65 4899999999999999984445689999999999999999999996 2 477999999999999976
Q ss_pred hHH-HHhhcCcHHHHHHHHHHHhcCCceEEEEEE
Q 003866 438 SEK-YQKRFGPLRYFVAGFLKFLCLPKYSYEVEY 470 (790)
Q Consensus 438 sek-~K~~lG~lrY~laal~~L~~~r~y~~~I~~ 470 (790)
.++ .|+++|.++|++++++.+++++.|+++|++
T Consensus 146 ~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~ 179 (300)
T PRK00861 146 ADREAKNRFGILAYILSGLQQLRELESFEVEIET 179 (300)
T ss_pred hhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEE
Confidence 543 456789999999999999999999998877
No 11
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=2.1e-40 Score=352.79 Aligned_cols=286 Identities=23% Similarity=0.320 Sum_probs=232.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
++|++||+||.||++++.+.++ ++.+.|++.++++.++.|+..+|+.++++++.. ..+|.||++|||||||+|+|+|.
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~-~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~d~ivv~GGDGTl~~v~~~l~ 78 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLR-EVIMLLREEGMEIHVRVTWEKGDAARYVEEARK-FGVDTVIAGGGDGTINEVVNALI 78 (293)
T ss_pred CceEEEEECCCccchhhHHHHH-HHHHHHHHCCCEEEEEEecCcccHHHHHHHHHh-cCCCEEEEECCCChHHHHHHHHh
Confidence 3689999999999998888774 678899999999999999999999888776543 34799999999999999999998
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEE-EEEEEEEeeeccchh
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHF-GMTVSYYGFVSDVLE 436 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~f-fln~agiGfdAdV~~ 436 (790)
...+ .+|||+||+||+|+||+++....++.+++..+..|..+++|++.++. +| |+|++++||+|+++.
T Consensus 79 ~~~~-----~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~~~~Dlg~v~~------~~~fln~~g~G~~a~v~~ 147 (293)
T TIGR00147 79 QLDD-----IPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDARAIDMGQVNK------QYCFINMAGGGFGTEITT 147 (293)
T ss_pred cCCC-----CCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCceEEEEEEECC------eEEEEEEEeechhhHhHh
Confidence 7532 36899999999999999743357899999999999999999999962 46 899999999999985
Q ss_pred -hhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEec-CCCCCCCccCCCCC
Q 003866 437 -LSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMR-KSKNEGMPRASSLS 514 (790)
Q Consensus 437 -~sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~N-r~~GGG~~iaP~As 514 (790)
..++.|+.+|.++|++++++.+.++++++++|++++ +.++....++.|+| ++||||+
T Consensus 148 ~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~d~--------------~~~~~~~~~~~v~n~~~~gg~~------- 206 (293)
T TIGR00147 148 ETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRGEG--------------EHWQGEAVVFLVGNGRQAGGGQ------- 206 (293)
T ss_pred hCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEECC--------------eEEEeeEEEEEEeCCcccCCCc-------
Confidence 446677789999999999999999999988887731 12223333344444 4444444
Q ss_pred CCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003866 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (790)
Q Consensus 515 ~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~ 594 (790)
T Consensus 207 -------------------------------------------------------------------------------- 206 (293)
T TIGR00147 207 -------------------------------------------------------------------------------- 206 (293)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003866 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (790)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W 674 (790)
T Consensus 207 -------------------------------------------------------------------------------- 206 (293)
T TIGR00147 207 -------------------------------------------------------------------------------- 206 (293)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEeeee--
Q 003866 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAGKH-- 752 (790)
Q Consensus 675 ~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~~~-- 752 (790)
.++|.|.++||.|||++|+..++++++++++.+..|+|...|+|.+++++....
T Consensus 207 ------------------------~~~p~a~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~ 262 (293)
T TIGR00147 207 ------------------------KLAPDASINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQT 262 (293)
T ss_pred ------------------------ccCCccccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEc
Confidence 445557789999999999999999999999999999999999999999765433
Q ss_pred -CCCCeeecCceeecCceeeecccccccccc
Q 003866 753 -THNSCGIDGELFPLNGQVISSLLPEQCRLI 782 (790)
Q Consensus 753 -~~~g~~vDGE~~~~~~~v~~~llp~~~~l~ 782 (790)
.+..+++|||.+.. .++.++++|..-+++
T Consensus 263 ~~~~~~~iDGE~~~~-~p~~i~v~p~al~~~ 292 (293)
T TIGR00147 263 PHKITFNLDGEPLGG-TPFHIEILPAHLRCR 292 (293)
T ss_pred CCCcEEEeCCCcCCC-CcEEEEEEhhccEEe
Confidence 33348999999975 479999999776653
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=2.3e-40 Score=354.82 Aligned_cols=181 Identities=24% Similarity=0.310 Sum_probs=153.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
++++++||+||+++. .+.+. .+.+.|.+++++++++.|+.++|+.++++++... .+|.||++|||||||||+|+|
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~-~~d~vvv~GGDGTl~evv~~l 76 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELR-EAVGLLREEGHTLHVRVTWEKGDAARYVEEALAL-GVATVIAGGGDGTINEVATAL 76 (300)
T ss_pred CCceEEEEECCCccc---hHHHH-HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHc-CCCEEEEECCccHHHHHHHHH
Confidence 468999999998762 24564 4566899999999999999999999999987543 479999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchh
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLE 436 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~ 436 (790)
+.++. ..++||||||+||||||||++..+.++.+|+..|..|..++||++.++ ++ +||+|++++||+++|+.
T Consensus 77 ~~~~~---~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~~iDlg~v~----~~-~~f~n~~~~G~~a~v~~ 148 (300)
T PRK13054 77 AQLEG---DARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQPIDLARVN----DR-TYFINMATGGFGTRVTT 148 (300)
T ss_pred Hhhcc---CCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCceEEEEEEEc----Cc-eEEEEEeecchhHHHHH
Confidence 87531 125899999999999999985445689999999999999999999996 22 37899999999999985
Q ss_pred h-hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEE
Q 003866 437 L-SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEY 470 (790)
Q Consensus 437 ~-sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~ 470 (790)
. .+++|+.+|+++|++++++.+++++.++++|+.
T Consensus 149 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~ 183 (300)
T PRK13054 149 ETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRG 183 (300)
T ss_pred hhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEe
Confidence 4 466777899999999999999999998888775
No 13
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=4.8e-40 Score=351.26 Aligned_cols=178 Identities=25% Similarity=0.331 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
++++|+||.+|.. +.|. .+.+.|++++++++++.|+.++||.++++++... ++|.||++|||||||||+|+|+.+
T Consensus 1 ~~~~I~N~~~~~~---~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~-~~d~vv~~GGDGTi~ev~ngl~~~ 75 (293)
T TIGR03702 1 KALLILNGKQADN---EDVR-EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALAL-GVSTVIAGGGDGTLREVATALAQI 75 (293)
T ss_pred CEEEEEeCCccch---hHHH-HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHc-CCCEEEEEcCChHHHHHHHHHHhh
Confidence 5789999998733 3454 4567899999999999999999999999988644 479999999999999999999875
Q ss_pred CCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhh-h
Q 003866 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL-S 438 (790)
Q Consensus 360 ~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~-s 438 (790)
.++ ..+||||||+||||||||++..+.++.+++..|+.|.++++|++.++ ++ +||+|++++||+|+|+.. .
T Consensus 76 ~~~---~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~~~iDlg~v~----~~-~~f~n~~~~G~da~v~~~~~ 147 (293)
T TIGR03702 76 RDD---AAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGAAQPIDLARVN----GK-HYFLNMATGGFGTRVTTETS 147 (293)
T ss_pred CCC---CCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCceeeeEEEEC----Cc-cEEEEEeecccchHhhhhhh
Confidence 321 24799999999999999984445789999999999999999999996 22 477999999999999854 4
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCceEEEEEE
Q 003866 439 EKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEY 470 (790)
Q Consensus 439 ek~K~~lG~lrY~laal~~L~~~r~y~~~I~~ 470 (790)
++.|+.+|.++|++++++.+++++.++++|+.
T Consensus 148 ~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~ 179 (293)
T TIGR03702 148 EKLKKALGGAAYLITGLTRFSELTAASCEFRG 179 (293)
T ss_pred HHHHhccchHHHHHHHHHHHhhCCCeEEEEEE
Confidence 56666789999999999999999888887765
No 14
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=349.17 Aligned_cols=288 Identities=31% Similarity=0.440 Sum_probs=238.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
+++++.+|+||.||++++.+.| ..++..|++++.++.++.|+..+||.++++++... .+|.||++|||||||||+|||
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~-~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~-~~D~via~GGDGTv~evingl 78 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLL-REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVE-GYDTVIAAGGDGTVNEVANGL 78 (301)
T ss_pred CCceEEEEEcccccccchhhHH-HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhc-CCCEEEEecCcchHHHHHHHH
Confidence 3688999999999999998888 57888999999999999999999999999998765 589999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcCCCC-hHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccch
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRD-PVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~d-p~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~ 435 (790)
++++. .+|||||+||+|||||++..+.+ +.+|+..|.+|+++.+|++.++ ++. ||+|++++||+|+++
T Consensus 79 ~~~~~------~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~----~~~-~fin~a~~G~~a~~~ 147 (301)
T COG1597 79 AGTDD------PPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVN----GRR-YFINNAGIGFDAEVV 147 (301)
T ss_pred hcCCC------CceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeEEEeehhcC----Ccc-eEEEEeecchhHHHH
Confidence 99853 23999999999999998555564 8899999999999999999775 332 789999999999999
Q ss_pred hhhHHHH-hhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEec-CCCCCCCccCCCC
Q 003866 436 ELSEKYQ-KRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMR-KSKNEGMPRASSL 513 (790)
Q Consensus 436 ~~sek~K-~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~N-r~~GGG~~iaP~A 513 (790)
...+..+ +.+|.++|+++++..+..+++++++|+++. +.++.+..++.++| .++||+
T Consensus 148 ~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~--------------~~~~~~~~~~~~~~~~~~gg~------- 206 (301)
T COG1597 148 AAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYDG--------------KTFEGEALALLVFNGNSYGGG------- 206 (301)
T ss_pred HhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEcC--------------cEEEEEEEEEEEecCcccccc-------
Confidence 8765544 458999999999999999999999999942 12223333333333 333333
Q ss_pred CCCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccc
Q 003866 514 SSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTD 593 (790)
Q Consensus 514 s~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~ 593 (790)
T Consensus 207 -------------------------------------------------------------------------------- 206 (301)
T COG1597 207 -------------------------------------------------------------------------------- 206 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCC
Q 003866 594 KWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEEN 673 (790)
Q Consensus 594 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~ 673 (790)
T Consensus 207 -------------------------------------------------------------------------------- 206 (301)
T COG1597 207 -------------------------------------------------------------------------------- 206 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEeeeeC
Q 003866 674 WIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAGKHT 753 (790)
Q Consensus 674 W~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~~~~ 753 (790)
..++|.|.++||.+|++++++.+++++++++..+..|.|...|-|+|++.+....+
T Consensus 207 ------------------------~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~ 262 (301)
T COG1597 207 ------------------------MKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEIT 262 (301)
T ss_pred ------------------------cccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEE
Confidence 33456677889999999999999999999999999999999999999997754432
Q ss_pred ---CCCeeecCceeecCceeeeccccccccccc
Q 003866 754 ---HNSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 754 ---~~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
..-+++|||..... ++.++++|..-++..
T Consensus 263 ~~~~~~~~~DGE~~~~~-p~~i~~~p~al~vl~ 294 (301)
T COG1597 263 SDPPIPVNLDGEYLGKT-PVTIEVLPGALRVLV 294 (301)
T ss_pred cCCCceEeeCCccCCCC-cEEEEEecccEEEEc
Confidence 22389999999776 499999998777654
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=338.43 Aligned_cols=179 Identities=25% Similarity=0.337 Sum_probs=156.2
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
.+++++||+||+||++++.+.+ +.+++.|++. ++++++.|+..+|+.++++++..+ ++|.||++|||||||||+|+|
T Consensus 241 ~~~~~~iI~NP~SG~g~~~~~~-~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~-~~d~Viv~GGDGTl~ev~~~l 317 (547)
T PRK12361 241 IHKRAWLIANPVSGGGKWQEYG-EQIQRELKAY-FDLTVKLTTPEISAEALAKQARKA-GADIVIACGGDGTVTEVASEL 317 (547)
T ss_pred cCCceEEEECCCCCCCcHHHHH-HHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhc-CCCEEEEECCCcHHHHHHHHH
Confidence 4688999999999999988888 4778888876 789999999999999999987543 479999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcCC----CChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeec
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV----RDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVS 432 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~----~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdA 432 (790)
.++ ++||||||+||||||||++.|+ .++.+++..|.+|..+++|++.++ + ++|+|++++||++
T Consensus 318 ~~~-------~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn----~--~~fln~agiG~da 384 (547)
T PRK12361 318 VNT-------DITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCN----D--RLMLLLVGIGFEQ 384 (547)
T ss_pred hcC-------CCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEc----C--eEEEEEEeechhH
Confidence 865 4899999999999999985365 378899999999999999999996 2 4779999999999
Q ss_pred cchhhhH-HHHhhcCcHHHHHHHHHHHhcCCceEEEEEEe
Q 003866 433 DVLELSE-KYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYL 471 (790)
Q Consensus 433 dV~~~se-k~K~~lG~lrY~laal~~L~~~r~y~~~I~~~ 471 (790)
+|+...+ ..|+.+|.++|+.++++.+.+++.++++|+++
T Consensus 385 ~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~d 424 (547)
T PRK12361 385 KMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLD 424 (547)
T ss_pred HHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 9986543 34557899999999999999999999999884
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.90 E-value=2.9e-23 Score=196.70 Aligned_cols=127 Identities=45% Similarity=0.739 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
|++||+||+||++++. | +.+++.|+..+..++++.|+..+++.++++........|.||++|||||||+|+|+|+..
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTS
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhc
Confidence 6899999999999987 6 689999999999999999999999999987444433238999999999999999999988
Q ss_pred CCCCCCCCccEEEeecCCcchhhhhhcCCCChHH-HHHHHHhCceeEEeEEEEE
Q 003866 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVS-AALAIVKGGLTATDVFAVE 412 (790)
Q Consensus 360 ~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~-Aa~~IlkG~~~~IDlg~V~ 412 (790)
.... .+|||+||+||+|+||+++....++.. ++..+..+..+++|+++|+
T Consensus 78 ~~~~---~~~l~iiP~GT~N~~ar~lg~~~~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 78 DRED---KPPLGIIPAGTGNDFARSLGIPSDPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp TSSS-----EEEEEE-SSS-HHHHHTT--SSHHH-HHHHHHHSEEEEEEEEEET
T ss_pred CCCc---cceEEEecCCChhHHHHHcCCCCCcHHHHHHHHHhCCCcEeEEEEeC
Confidence 5421 579999999999999998555677777 7788888888899999985
No 17
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.83 E-value=5.8e-20 Score=210.04 Aligned_cols=239 Identities=17% Similarity=0.177 Sum_probs=168.2
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
.-..++||+||+||..++..+. ..++.+|....+ +++-.+..+.-+..+.+++. ...|+|+|||||+.+|++.+
T Consensus 270 ~~~PLlVfvNpKSGg~~G~~ll-~~f~~lLnp~QV-fdl~~~~~p~~gL~l~~~~~----~~riLVcGGDGTvGWVL~~i 343 (634)
T KOG1169|consen 270 DWRPLLVFVNPKSGGQQGERLL-RRFRYLLNPVQV-FDLLKRGGPRPGLTLFRDVP----DFRILVCGGDGTVGWVLGCI 343 (634)
T ss_pred CCcceEEEEecCCcccccHHHH-HHHHHhcChhhE-EecccCCCCchhHHHHHhCC----cceEEEecCCCcchhhhhhH
Confidence 4467999999999999998766 466766664432 33333333556666777653 35999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcCC-----C---ChHHHHHHHHhCceeEEeEEEEEeeec-c----------
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV-----R---DPVSAALAIVKGGLTATDVFAVEWIQT-G---------- 417 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~-----~---dp~~Aa~~IlkG~~~~IDlg~V~~~~~-g---------- 417 (790)
-....+.....+|+||+|+||||||+|. ++. . ++...+..|..+.+.++|-+.|..... +
T Consensus 344 ~~~n~~~~~~~PpVAilPLGTGNDLsR~-l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~ 422 (634)
T KOG1169|consen 344 DKLNKQNAIPPPPVAILPLGTGNDLSRV-LRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPP 422 (634)
T ss_pred HHhhccccCCCCCeEEEecCCCCchHhh-cCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCC
Confidence 7753333334689999999999999996 432 1 277888899999999999999875322 0
Q ss_pred ------eEEEEEEEEEEeeeccchhhhHHHH---------hhcCcHHHHHHHHHHHhcCC----ceEEEEEEecCCcccc
Q 003866 418 ------VIHFGMTVSYYGFVSDVLELSEKYQ---------KRFGPLRYFVAGFLKFLCLP----KYSYEVEYLPASKEDL 478 (790)
Q Consensus 418 ------~~~ffln~agiGfdAdV~~~sek~K---------~~lG~lrY~laal~~L~~~r----~y~~~I~~~p~~~~~~ 478 (790)
...++.|++++|+||.|+..+..+| +.+.++.|+-.+.+..+..+ ..+.+|+...
T Consensus 423 ~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~------ 496 (634)
T KOG1169|consen 423 EKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDG------ 496 (634)
T ss_pred CcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccceEEEEcc------
Confidence 1235779999999999997654443 23578888877744443222 3455555431
Q ss_pred ccccccccceeecC-ceE-EEEec-CCCCCCCccCCCCCCCCCCC---CCCCCCCCCceeEe
Q 003866 479 EGKQSAEREVVDMS-DLY-TDIMR-KSKNEGMPRASSLSSIDSIM---TPSRMSGGDPDTTC 534 (790)
Q Consensus 479 ~g~~~~~~e~ve~~-~l~-l~V~N-r~~GGG~~iaP~As~~Dgil---~~sr~~DG~LDVvc 534 (790)
+.+.++.+ ++- +++.| ++||||-.++-.....++.+ .+...+||.++||+
T Consensus 497 ------d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvg 552 (634)
T KOG1169|consen 497 ------DGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVG 552 (634)
T ss_pred ------cceEccCCCCceeEEEEcccccccCcccccccCccccccccccccCCCcCeEEEEE
Confidence 23445555 343 88889 99999999998766666555 33334559999887
No 18
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.77 E-value=8.6e-19 Score=165.84 Aligned_cols=103 Identities=25% Similarity=0.351 Sum_probs=74.7
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 282 lVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
+||+||+||++++.+++. +++..+. .+.++.|+ ...++.++++++. .+|.||++|||||+|||+|+|+.+
T Consensus 1 lvi~NP~sG~~~~~~~~~-~~~~~l~----~~~v~~t~~~~~~~~~~~~~~~~---~~d~vvv~GGDGTi~~vvn~l~~~ 72 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLR-KFRLLLN----PAQVFDLTKKGPAAALVIFRDLP---KFDRVLVCGGDGTVGWVLNALDKR 72 (124)
T ss_pred CEEEcCCCCCCccHHHHH-HHHHHcC----CceEEEEecCChHHHHHHHhhcC---cCCEEEEEccccHHHHHHHHHHhc
Confidence 589999999999887664 4555554 33455554 4455666655553 378999999999999999999976
Q ss_pred CCCCCCCCccEEEeecCCcchhhhhhcCCCChHHH
Q 003866 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSA 394 (790)
Q Consensus 360 ~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~A 394 (790)
..+ ...+|||+||+||+||||+++....++..+
T Consensus 73 ~~~--~~~~plgiiP~GTgNdfar~lgi~~~~~~~ 105 (124)
T smart00046 73 ELP--LPEPPVAVLPLGTGNDLARSLGWGGGYDGE 105 (124)
T ss_pred ccc--cCCCcEEEeCCCChhHHHHHcCCCCCcccc
Confidence 431 123899999999999999974333555443
No 19
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-18 Score=186.97 Aligned_cols=185 Identities=36% Similarity=0.572 Sum_probs=148.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
++||++|++||.+.++.++..|.+...|+|..+|++++++.|++.+||+.++..++. ..|+|+|+|||||+.||+.|+
T Consensus 59 ~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t--~~Dii~VaGGDGT~~eVVTGi 136 (535)
T KOG4435|consen 59 RPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT--QEDIIYVAGGDGTIGEVVTGI 136 (535)
T ss_pred ccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc--CCCeEEEecCCCcHHHhhHHH
Confidence 789999999999999888888888899999999999999999999999999999864 249999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcC--------CCChHHHHHHHHhCce---eEEeEEEEEeeecceEEEEEEE
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLG--------VRDPVSAALAIVKGGL---TATDVFAVEWIQTGVIHFGMTV 425 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG--------~~dp~~Aa~~IlkG~~---~~IDlg~V~~~~~g~~~ffln~ 425 (790)
+.+. ....|++++|+|--|....+.+. ++...+|+.+++++.. .++||..-. ..-+..|.++-
T Consensus 137 ~Rrr----~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~~g--s~l~P~fgl~g 210 (535)
T KOG4435|consen 137 FRRR----KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTTEG--STLAPEFGLGG 210 (535)
T ss_pred Hhcc----cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEeccCC--CccccccccCc
Confidence 9873 23689999999999887655432 1345678899999977 556664411 11235688899
Q ss_pred EEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhc-CC-ceEEEEEE
Q 003866 426 SYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLC-LP-KYSYEVEY 470 (790)
Q Consensus 426 agiGfdAdV~~~sek~K~~lG~lrY~laal~~L~~-~r-~y~~~I~~ 470 (790)
++||..-|+.....||. ++|+++-..+.+..+++ ++ +.++.++|
T Consensus 211 lswG~frdi~~~~~KyW-Yfgplk~~aA~f~s~lk~wpak~e~vv~y 256 (535)
T KOG4435|consen 211 LSWGWFRDIEDTRKKYW-YFGPLKRRAAYFWSMLKRWPAKIECVVEY 256 (535)
T ss_pred cchhhhhhhhhhhhhee-eecHHHHHHHHHHHHHhcCCCceeEEecc
Confidence 99999999988888885 89998766677777764 22 45566666
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.71 E-value=6.6e-17 Score=179.59 Aligned_cols=241 Identities=20% Similarity=0.181 Sum_probs=158.6
Q ss_pred CCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 275 CKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 275 ~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
..-++.++||+||+||..++.++++ .+--+|.-..+ +++ ....+..|.|+-+++. .-.|++|||||||.+++.
T Consensus 362 SplmkPLLVFVNPKSGGNqGsK~lq-~f~WyLNPRQV-FDl-sq~GPK~aLEmyRKV~----nLRILaCGGDGTVGWiLS 434 (1004)
T KOG0782|consen 362 SPLMKPLLVFVNPKSGGNQGSKALQ-TFCWYLNPRQV-FDL-SQLGPKFALEMYRKVV----NLRILACGGDGTVGWILS 434 (1004)
T ss_pred CCCCCceEEEecCCCCCcchHHHHH-HHHHhcChhhh-eeh-hccCcHHHHHHHHhcc----ceEEEEecCCCceeehhh
Confidence 3457889999999999999988764 34345544432 222 3357888888888864 258999999999999999
Q ss_pred HHHcCCCCCCCCCccEEEeecCCcchhhhhhc---CC-CChH-HHHHHHHhCceeEEeEEEEEeeec----------c-e
Q 003866 355 GLLSRGNQKEGISIPIGIIPAGSDNSLVWTVL---GV-RDPV-SAALAIVKGGLTATDVFAVEWIQT----------G-V 418 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPaGTGNdfArsll---G~-~dp~-~Aa~~IlkG~~~~IDlg~V~~~~~----------g-~ 418 (790)
-|-+.. -...+|+||+|+||||||||++. |. ..|+ ..+.++..|.+..+|-+.++...+ | +
T Consensus 435 tLD~L~---l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~ 511 (1004)
T KOG0782|consen 435 TLDNLN---LPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQ 511 (1004)
T ss_pred hhhhcC---CCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccch
Confidence 986652 12358999999999999999742 12 2455 456688899999999999875321 1 1
Q ss_pred ----EEEEEEEEEEeeeccchhhh--------HHHHh-hcCcHHHHHHHHHHHhc--CC--ceEEEEEEecCCccccccc
Q 003866 419 ----IHFGMTVSYYGFVSDVLELS--------EKYQK-RFGPLRYFVAGFLKFLC--LP--KYSYEVEYLPASKEDLEGK 481 (790)
Q Consensus 419 ----~~ffln~agiGfdAdV~~~s--------ek~K~-~lG~lrY~laal~~L~~--~r--~y~~~I~~~p~~~~~~~g~ 481 (790)
...|.|++++||||.|.-.+ |++.. +..++.|.-.++..|+. .+ .-+++|.-++.+.++.
T Consensus 512 ~~LPL~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlTPk--- 588 (1004)
T KOG0782|consen 512 SALPLTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLTPK--- 588 (1004)
T ss_pred hccchhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCChh---
Confidence 12467899999999997432 33322 33566676556655542 11 2346777766554331
Q ss_pred cccccceeecCceEEEEec-CCCCCCCccCCCCCCCCC-CCCCCCCCCCCceeEeccC
Q 003866 482 QSAEREVVDMSDLYTDIMR-KSKNEGMPRASSLSSIDS-IMTPSRMSGGDPDTTCSST 537 (790)
Q Consensus 482 ~~~~~e~ve~~~l~l~V~N-r~~GGG~~iaP~As~~Dg-il~~sr~~DG~LDVvcs~~ 537 (790)
. -++.-.-+++.| ++|-+|-..+ ..+-|. -++|.|-+||.++| ++.+
T Consensus 589 -I-----qeLK~qCivFlNIprYcaGTmPW--G~pgdhhDfePqrhdDGyvEV-iGFT 637 (1004)
T KOG0782|consen 589 -I-----QELKLQCIVFLNIPRYCAGTMPW--GEPGDHHDFEPQRHDDGYVEV-IGFT 637 (1004)
T ss_pred -h-----hhcccceEEEecchhhhcCccCC--CCCCccccCCccccCCceEEE-Eeee
Confidence 1 112222366778 6666665433 333333 35888999999994 4444
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.17 E-value=5.3e-11 Score=117.37 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=57.1
Q ss_pred EEEEEEEeeeccchhhhHHHH---------hhcCcHHHHHHHHHHHhc--CC--ceEEEEEEecCCccccccccccccce
Q 003866 422 GMTVSYYGFVSDVLELSEKYQ---------KRFGPLRYFVAGFLKFLC--LP--KYSYEVEYLPASKEDLEGKQSAEREV 488 (790)
Q Consensus 422 fln~agiGfdAdV~~~sek~K---------~~lG~lrY~laal~~L~~--~r--~y~~~I~~~p~~~~~~~g~~~~~~e~ 488 (790)
|+|++|+||||+|+...+..| +.+|+++|++++++.++. ++ .++++|++++ +.
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg--------------~~ 67 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDG--------------VD 67 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECC--------------Ee
Confidence 579999999999987554332 257999999999999964 33 2467777742 22
Q ss_pred eecC--ceEEEEec-CCCCCCCccCCCC
Q 003866 489 VDMS--DLYTDIMR-KSKNEGMPRASSL 513 (790)
Q Consensus 489 ve~~--~l~l~V~N-r~~GGG~~iaP~A 513 (790)
.+.+ ..+++|+| ++||||+.++|.+
T Consensus 68 ~~~~~~~~~v~v~N~~~~ggG~~i~p~~ 95 (160)
T smart00045 68 VDLPNSLEGIAVLNIPSYGGGTNLWGTT 95 (160)
T ss_pred ccCCCCccEEEEECCCccccCcccccCC
Confidence 2333 34588999 9999999998763
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.80 E-value=4.3e-08 Score=105.42 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCchhHHHHHH-HhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLAS-TVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~~hA~ela~-~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|+.|+.|+.. ..+.+.+ +++...|+..|+++.+.. ++..+++...+. .+.. .++|.||++|||||+.++++
T Consensus 1 m~v~iv~~~~k--~~~~~~~-~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDGTlL~a~~- 75 (277)
T PRK03708 1 MRFGIVARRDK--EEALKLA-YRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE-MDVDFIIAIGGDGTILRIEH- 75 (277)
T ss_pred CEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccccccc-cCCCEEEEEeCcHHHHHHHH-
Confidence 46888888844 4566666 578888999999887752 222222222221 2211 24799999999999999999
Q ss_pred HHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 356 LLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
+... ++|++.||+|+. +|... +.+.+...++..+++|...
T Consensus 76 ~~~~-------~~pi~gIn~G~l-GFl~~-~~~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 76 KTKK-------DIPILGINMGTL-GFLTE-VEPEETFFALSRLLEGDYF 115 (277)
T ss_pred hcCC-------CCeEEEEeCCCC-Ccccc-CCHHHHHHHHHHHHcCCce
Confidence 7654 589999999999 77765 4566778889999999754
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.66 E-value=2.4e-07 Score=100.89 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
+.++++||+|| |+..+.+.+ ..+...|+++|+++.+..++...++.+.+... ....+|.||++|||||+.++++.+
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-~~~~~d~vi~~GGDGT~l~~~~~~ 77 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAA-ERCAKQLEARGCKVLMGPSGPKDNPYPVFLAS-ASELIDLAIVLGGDGTVLAAARHL 77 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecCchhhccccchhhc-cccCcCEEEEECCcHHHHHHHHHh
Confidence 46789999999 555666666 46677889999988777655443322221111 122479999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeec-CCcchhhhhhcC-CCChHHHHHHHHhCcee
Q 003866 357 LSRGNQKEGISIPIGIIPA-GSDNSLVWTVLG-VRDPVSAALAIVKGGLT 404 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPa-GTGNdfArsllG-~~dp~~Aa~~IlkG~~~ 404 (790)
... .+|++.|.+ |+-.-|+. ... ..+ .+++..+++|...
T Consensus 78 ~~~-------~~pv~gin~~G~lGFL~~-~~~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 78 APH-------DIPILSVNVGGHLGFLTH-PRDLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred ccC-------CCCEEEEecCCcceEecC-chhhcch-HHHHHHHHcCCce
Confidence 654 589999998 77666663 211 223 6788999999754
No 24
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.19 E-value=6.1e-06 Score=90.13 Aligned_cols=74 Identities=28% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHH
Q 003866 319 TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAI 398 (790)
Q Consensus 319 e~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~I 398 (790)
+...+.+.+++.+... +.|.|+.+|||||...|++++ .. ++|+--||+||-|-+.=-.+.+.+....+..+
T Consensus 84 tTa~DT~~~~r~~~~~-gVdlIvfaGGDGTarDVa~av--~~------~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~ 154 (355)
T COG3199 84 TTAEDTINAVRRMVER-GVDLIVFAGGDGTARDVAEAV--GA------DVPVLGIPAGVKNYSGVFALSPEDAARLLGAF 154 (355)
T ss_pred ccHHHHHHHHHHHHhc-CceEEEEeCCCccHHHHHhhc--cC------CCceEeeccccceeccccccChHHHHHHHHHH
Confidence 3456677778887643 589999999999999999999 21 59999999999998741123344444555677
Q ss_pred HhC
Q 003866 399 VKG 401 (790)
Q Consensus 399 lkG 401 (790)
++|
T Consensus 155 lkg 157 (355)
T COG3199 155 LKG 157 (355)
T ss_pred hcc
Confidence 888
No 25
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.16 E-value=2.6e-05 Score=84.88 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC---chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~---~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++++.||+||... .+.+.+ +.+...|++.++++.+..+.. ..++.......+....+|.||++|||||+.++++
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~-~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 80 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETL-RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAAR 80 (295)
T ss_pred CCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHH
Confidence 5679999998763 455556 467778889999887755432 1111111111112234799999999999999999
Q ss_pred HHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 355 GLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
.+... ++|+.-|.+|+-.-|+. ..+.+..+++..+++|..
T Consensus 81 ~~~~~-------~~Pvlgin~G~lGFl~~--~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 81 ALARH-------NVPVLGINRGRLGFLTD--IRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HhcCC-------CCCEEEEeCCccccccc--CCHHHHHHHHHHHHcCCc
Confidence 88543 57877788887543331 344567788899999864
No 26
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=98.15 E-value=3e-06 Score=84.14 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=71.9
Q ss_pred EEEEEEEeeeccchhhhHHHH---------hhcCcHHHHHHHHHHHhcCCceE--EEEEEecCCccccccccccccceee
Q 003866 422 GMTVSYYGFVSDVLELSEKYQ---------KRFGPLRYFVAGFLKFLCLPKYS--YEVEYLPASKEDLEGKQSAEREVVD 490 (790)
Q Consensus 422 fln~agiGfdAdV~~~sek~K---------~~lG~lrY~laal~~L~~~r~y~--~~I~~~p~~~~~~~g~~~~~~e~ve 490 (790)
|.|++|+|+||.|+...++.| +..+++.|...+++.++..+... -+|++. .+++.++
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~------------~dg~~~~ 69 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELE------------VDGKEVD 69 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccc------------cCCeeEe
Confidence 578999999999998766544 24689999999999988332221 122221 1344556
Q ss_pred cC-ceE-EEEec-CCCCCCCccCCCCCCCCC--CCCCCCCCCCCceeEe
Q 003866 491 MS-DLY-TDIMR-KSKNEGMPRASSLSSIDS--IMTPSRMSGGDPDTTC 534 (790)
Q Consensus 491 ~~-~l~-l~V~N-r~~GGG~~iaP~As~~Dg--il~~sr~~DG~LDVvc 534 (790)
++ ... +++.| ++|+||..+|+....... .+++..++||.|+|++
T Consensus 70 lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg 118 (161)
T PF00609_consen 70 LPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVG 118 (161)
T ss_pred eecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEE
Confidence 66 443 78889 999999999988764332 3567889999999887
No 27
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.97 E-value=2.9e-05 Score=84.35 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHH-----H--HHHhhhcCCCCceEEEeCchHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKN-----L--ASTVDISSCPDGIICVGGDGII 349 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~e-----l--a~~~~~~~~~D~IVvvGGDGTl 349 (790)
..+++.||.||.. -.+.+.. +.+...|++.|+++.+.... .+... . ..++ ....|.||++|||||+
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~d~vi~lGGDGT~ 76 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTH-EMLYHWLTSKGYEVIVEQQI--AHELQLKNVKTGTLAEI--GQQADLAIVVGGDGNM 76 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHH-HHHHHHHHHCCCEEEEecch--hhhcCcccccccchhhc--CCCCCEEEEECCcHHH
Confidence 4678999999855 3455555 46777888899876553211 11100 0 0111 1246999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeecCCcc-hhhhhhcCCCChHHHHHHHHhCce
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPAGSDN-SLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPaGTGN-dfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
..+++.+... .+.||+.++|| +|... +.+.+..+++..|++|..
T Consensus 77 L~aa~~~~~~---------~~Pilgin~G~lGFl~~-~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 77 LGAARVLARY---------DIKVIGINRGNLGFLTD-LDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHHHHhcCC---------CCeEEEEECCCCCcccc-cCHHHHHHHHHHHHcCCc
Confidence 9999988543 24578888898 88764 556677889999999875
No 28
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.86 E-value=4.6e-06 Score=97.78 Aligned_cols=124 Identities=19% Similarity=0.297 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
...++|++|-+||..++.++. ++.+.+|.-..+ +++ .-..+.-+..+-..++ .-.|+|+||||++.+|+..+.
T Consensus 194 ~spllv~insksgd~qg~~~l-rkfkq~lnp~qV-fdl-l~~gp~~gL~~f~~~d----~friLvcggdGsv~wvls~~d 266 (1099)
T KOG1170|consen 194 GSPLLVFINSKSGDSQGQRFL-RKFKQILNPIQV-FDL-IAGGPDFGLTFFSHFE----SFRILVCGGDGSVGWVLSAID 266 (1099)
T ss_pred CCceeEeecccCCCchhHHHH-HhhhhhcCHHHH-HHH-HccCcchhhhhhhccc----ceEEEEecCCCCCcchHHHHH
Confidence 356999999999999987655 355545443221 111 1223333333333332 137999999999999999876
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCC-------hHHHHHHHHhCceeEEeEEEEE
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRD-------PVSAALAIVKGGLTATDVFAVE 412 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~d-------p~~Aa~~IlkG~~~~IDlg~V~ 412 (790)
.-.- ..+.-++++|.|||||+|| ++|..+ ....+...-+..++.+|-+.|-
T Consensus 267 s~~l---h~kcql~vlplgtgndlar-vlgwg~a~~ddt~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 267 RLNL---HSKCQLAVLPLGTGNDLAR-VLGWGHAFYDDTLLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred hccc---hhhcccccccCCChHHHHH-HhcccccCchhhccHHHHHHHHhhhhhhhhcchhh
Confidence 5421 2357899999999999999 476531 1244455556677777776653
No 29
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.66 E-value=0.0006 Score=74.72 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=77.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhH---HHH-----------HHHhhhcCCCCceEE
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA---KNL-----------ASTVDISSCPDGIIC 342 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA---~el-----------a~~~~~~~~~D~IVv 342 (790)
+++++.||.|+.. ..+.+.. +.+...|...|+++.+.......-. ..+ ...+ .+..|.||+
T Consensus 4 ~~~~I~iv~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vi~ 78 (306)
T PRK03372 4 ASRRVLLVAHTGR--DEATEAA-RRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA--ADGCELVLV 78 (306)
T ss_pred CccEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc--ccCCCEEEE
Confidence 6788999999854 4455555 4677788999988766432211000 000 0111 124699999
Q ss_pred EeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 343 VGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 343 vGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
+|||||+-.++..+... .+|+.-|..|+-.=|+. ..+.+..+++..+++|...
T Consensus 79 lGGDGT~L~aar~~~~~-------~~PilGIN~G~lGFL~~--~~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 79 LGGDGTILRAAELARAA-------DVPVLGVNLGHVGFLAE--AEAEDLDEAVERVVDRDYR 131 (306)
T ss_pred EcCCHHHHHHHHHhccC-------CCcEEEEecCCCceecc--CCHHHHHHHHHHHHcCCce
Confidence 99999999999987654 47888899998755553 3445677889999999754
No 30
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.53 E-value=0.00042 Score=75.40 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHH---HH-HHhhhcCCCCceEEEeCchHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKN---LA-STVDISSCPDGIICVGGDGIINE 351 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~e---la-~~~~~~~~~D~IVvvGGDGTlnE 351 (790)
.+++++||.|+.. ..+.+.+ +.+...|+..++++.+...+... ++.+ +. .++ ...+|.||++|||||+.+
T Consensus 4 ~~~~v~iv~~~~~--~~~~e~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~GGDGt~l~ 78 (291)
T PRK02155 4 QFKTVALIGRYQT--PGIAEPL-ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI--GARADLAVVLGGDGTMLG 78 (291)
T ss_pred cCCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh--ccCCCEEEEECCcHHHHH
Confidence 3567999988855 3455555 46777888888876554322110 1000 01 222 124799999999999999
Q ss_pred HHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 352 VLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 352 VlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
+++.+... ++|+-=|.+|+-.-|+. .-+.+..+++..+++|..+
T Consensus 79 ~~~~~~~~-------~~pilGIn~G~lGFL~~--~~~~~~~~~l~~~~~g~~~ 122 (291)
T PRK02155 79 IGRQLAPY-------GVPLIGINHGRLGFITD--IPLDDMQETLPPMLAGNYE 122 (291)
T ss_pred HHHHhcCC-------CCCEEEEcCCCcccccc--CCHHHHHHHHHHHHcCCce
Confidence 99998654 46776678887544442 3335667788899998753
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.48 E-value=0.0013 Score=71.47 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=72.6
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch--hH-HHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG--HA-KNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~--hA-~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
..++++.||.||. + .+.+.. +++...|++.|+++.+....... .. ..+ .++ .+.+|.||++|||||+-.+
T Consensus 8 ~~~~~i~ii~~~~--~-~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~--~~~~Dlvi~iGGDGT~L~a 80 (287)
T PRK14077 8 KNIKKIGLVTRPN--V-SLDKEI-LKLQKILSIYKVEILLEKESAEILDLPGYGL-DEL--FKISDFLISLGGDGTLISL 80 (287)
T ss_pred ccCCEEEEEeCCc--H-HHHHHH-HHHHHHHHHCCCEEEEecchhhhhcccccch-hhc--ccCCCEEEEECCCHHHHHH
Confidence 3577899999996 3 565655 46777888889877654321100 00 000 111 1247999999999999999
Q ss_pred HHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 353 LNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
+..+... .+|+--|-+|+--=|+. ..+.+..+++..+++|..
T Consensus 81 a~~~~~~-------~~PilGIN~G~lGFLt~--~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 81 CRKAAEY-------DKFVLGIHAGHLGFLTD--ITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred HHHhcCC-------CCcEEEEeCCCcccCCc--CCHHHHHHHHHHHHcCCC
Confidence 9887654 47766677776444432 334556678889999864
No 32
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.47 E-value=0.00024 Score=76.74 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCCchhH-----------------------HHHHHHhhhcC
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTSAGHA-----------------------KNLASTVDISS 335 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~a-gi~~~v~~Te~~~hA-----------------------~ela~~~~~~~ 335 (790)
|+.||.||.. ..+.+.+ ..+...|.+. ++.+.+... -.... .....+. ...
T Consensus 1 kVgii~np~~--~~~~~~~-~~~~~~L~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 75 (285)
T PF01513_consen 1 KVGIIANPNK--PEAIELA-NELARWLLEKQGIEVLVEGS-IAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEM-LEE 75 (285)
T ss_dssp -EEEEESSCG--HCCCHHH-HHHHHHHHHTTTEEEEEEHH-HHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHH-HCC
T ss_pred CEEEEEcCCC--HHHHHHH-HHHHHHHHhCCCEEEEEChH-HHHHHHHhccccccccccccccccccccchhhhhh-ccc
Confidence 5889999983 3444555 4566788877 543322110 00000 0001111 124
Q ss_pred CCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEE
Q 003866 336 CPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTAT 406 (790)
Q Consensus 336 ~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~I 406 (790)
++|.||++|||||+-.++..+... .+|+--|+.||-|-|+. ..+.+...++..+++|....-
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~~~-------~~Pilgin~G~lgfl~~--~~~~~~~~~l~~~~~g~~~~~ 137 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFGDY-------DIPILGINTGTLGFLTE--FEPEDIEEALEKILAGEYSIE 137 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCTTS-------T-EEEEEESSSSTSSSS--EEGCGHHHHHHHHHHTHCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHhccC-------CCcEEeecCCCcccccc--CCHHHHHHHHHHHhcCCeEEE
Confidence 589999999999999999998653 58999999999666653 456778888999999865433
No 33
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.36 E-value=0.0019 Score=70.85 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=71.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--hhHH--------H----HHHHhhhcCCCCceEEEe
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAK--------N----LASTVDISSCPDGIICVG 344 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~--~hA~--------e----la~~~~~~~~~D~IVvvG 344 (790)
+++.||.|+.. ..+.+.. ..+...|++.|+++.+...... +... + -...+ ....|.||++|
T Consensus 2 ~~igiv~n~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dlvi~iG 76 (305)
T PRK02649 2 PKAGIIYNDGK--PLAVRTA-EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF--DSSMKFAIVLG 76 (305)
T ss_pred CEEEEEEcCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc--ccCcCEEEEEe
Confidence 57899999843 3455555 4677789999988765432100 0000 0 00111 12369999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 345 GDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 345 GDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
||||+-.++.-+... .+|+--|-+|+=.=|+. ..+.+..+++..+++|..
T Consensus 77 GDGTlL~aar~~~~~-------~iPilGIN~G~lGFLt~--~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 77 GDGTVLSAARQLAPC-------GIPLLTINTGHLGFLTE--AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcHHHHHHHHHhcCC-------CCcEEEEeCCCCccccc--CCHHHHHHHHHHHHcCCc
Confidence 999999999987654 47776677876544442 334566788889999874
No 34
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.26 E-value=0.0034 Score=68.47 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHH----------HH--HHHhhhcCCCCceEEEeCc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAK----------NL--ASTVDISSCPDGIICVGGD 346 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~----------el--a~~~~~~~~~D~IVvvGGD 346 (790)
|++.||.||.. -.+.+.. +.+...|++.|+++.+..... .... .. ...+ .+.+|.||++|||
T Consensus 1 m~igii~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvi~lGGD 74 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYI-QELFDELEERGAEVLIEEKFL-DFLKQDLKFHPSYDTFSDNEEL--DGSADMVISIGGD 74 (292)
T ss_pred CEEEEEeCCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchh-hhhccccccccccccccchhhc--ccCCCEEEEECCc
Confidence 46889999844 4455555 467778889998776543111 0000 00 0122 1246999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 347 GIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 347 GTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
||+-.++..+... ++|+--|-.|+=.=|+. ..+.+..+++..+++|...
T Consensus 75 GT~L~aa~~~~~~-------~~PilGIN~G~lGFLt~--~~~~~~~~~l~~i~~g~~~ 123 (292)
T PRK01911 75 GTFLRTATYVGNS-------NIPILGINTGRLGFLAT--VSKEEIEETIDELLNGDYT 123 (292)
T ss_pred HHHHHHHHHhcCC-------CCCEEEEecCCCCcccc--cCHHHHHHHHHHHHcCCce
Confidence 9999999988654 47776677887433331 3345667788899999743
No 35
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.18 E-value=0.0025 Score=69.58 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc----------hhHHHHHHHhhhcCCCCceEEEeCc
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA----------GHAKNLASTVDISSCPDGIICVGGD 346 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~----------~hA~ela~~~~~~~~~D~IVvvGGD 346 (790)
.++++.||.||.. -.+.+.+ +.+...|.+.|+++.+...... +....-..++ .+..|.||++|||
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vi~lGGD 78 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTA-HTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL--GQYCDLVAVLGGD 78 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc--CcCCCEEEEECCc
Confidence 3678999999855 3455555 4677788999988765432111 1000000122 1247999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 347 GIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 347 GTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
||+-.++..+... .+|+-=|-+|+-.-|+. ..+.+..+++..+++|..
T Consensus 79 GT~L~aa~~~~~~-------~~PilGIN~G~lGFL~~--~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 79 GTFLSVAREIAPR-------AVPIIGINQGHLGFLTQ--IPREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHHhccc-------CCCEEEEecCCCeEeec--cCHHHHHHHHHHHHcCCc
Confidence 9999999988654 47777788887444442 233556678888998864
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.18 E-value=0.0055 Score=65.95 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+++.|+.|+.. .+.++. ++++..|++.|+++.+. . +..|.||++|||||+-.++..+..
T Consensus 3 ~~i~iv~~~~~---~a~~~~-~~l~~~l~~~g~~~~~~--------------~---~~~D~vi~lGGDGT~L~a~~~~~~ 61 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKV-KPLKKIAEEYGFTVVDH--------------P---KNANIIVSIGGDGTFLQAVRKTGF 61 (264)
T ss_pred cEEEEEECCCH---HHHHHH-HHHHHHHHHCCCEEEcC--------------C---CCccEEEEECCcHHHHHHHHHhcc
Confidence 36888888766 455555 46777899999866421 1 136999999999999999888754
Q ss_pred CCCCCCCCCccEEEeec-CCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 359 RGNQKEGISIPIGIIPA-GSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPa-GTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
.+ .+|+--|.+ |+-.=|+. ....+..+++..+++|..
T Consensus 62 ~~------~~pilgIn~~G~lGFL~~--~~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 62 RE------DCLYAGISTKDQLGFYCD--FHIDDLDKMIQAITKEEI 99 (264)
T ss_pred cC------CCeEEeEecCCCCeEccc--CCHHHHHHHHHHHHcCCc
Confidence 32 356444566 65544442 334566778888999874
No 37
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.93 E-value=0.0089 Score=64.40 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
|++.|+.|+ +.++.++. ++++..|+..|+++. . +.+|.||++|||||+-.++..+..
T Consensus 1 M~i~Ii~~~---~~~~~~~~-~~l~~~l~~~g~~~~------------------~-~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 1 MKVAIISNG---DPKSKRVA-SKLKKYLKDFGFILD------------------E-KNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred CEEEEEeCC---CHHHHHHH-HHHHHHHHHcCCccC------------------C-cCCCEEEEECCcHHHHHHHHHhcc
Confidence 357788783 34555555 577778888887631 0 136999999999999999998865
Q ss_pred CCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.. ..+|+--|.+|+-.=|+. ..+.+..+++..|++|...
T Consensus 58 ~~-----~~iPilGIN~G~lGFL~~--~~~~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 58 QL-----DKVRFVGVHTGHLGFYTD--WRPFEVDKLVIALAKDPGQ 96 (265)
T ss_pred cC-----CCCeEEEEeCCCceeccc--CCHHHHHHHHHHHHcCCce
Confidence 21 147877788887444442 3445667788999998744
No 38
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.81 E-value=0.01 Score=70.32 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=75.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHH-HHH---H-hhhcCCCCceEEEeCchHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKN-LAS---T-VDISSCPDGIICVGGDGIIN 350 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~e-la~---~-~~~~~~~D~IVvvGGDGTln 350 (790)
.+|+++.||.|+.. -.+.+.. ..+...|.+.++++.+..... ....+ +.. . .+. ...|.||++|||||+-
T Consensus 288 ~~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDGT~L 362 (569)
T PRK14076 288 IKPTKFGIVSRIDN--EEAINLA-LKIIKYLDSKGIPYELESFLY-NKLKNRLNEECNLIDDI-EEISHIISIGGDGTVL 362 (569)
T ss_pred cCCcEEEEEcCCCC--HHHHHHH-HHHHHHHHHCCCEEEEechhh-hhhcccccccccccccc-cCCCEEEEECCcHHHH
Confidence 37889999999853 4455555 467778888888765532111 00000 000 0 011 1369999999999999
Q ss_pred HHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.++.-+... .+||--|-+|+-.=|+. ..+.+..+++..+++|...
T Consensus 363 ~aa~~~~~~-------~~PilGin~G~lGFL~~--~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 363 RASKLVNGE-------EIPIICINMGTVGFLTE--FSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred HHHHHhcCC-------CCCEEEEcCCCCCcCcc--cCHHHHHHHHHHHHcCCce
Confidence 999987543 47877788888555552 3445677888999999743
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.68 E-value=0.03 Score=60.01 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=62.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
|++.|+.+|. +.+.+ +.++..|.++|+.+.+.. ... . .....|.||++|||||+-.++..+
T Consensus 1 m~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~--~~~-------~--~~~~~d~vi~iGGDGT~L~a~~~~-- 61 (256)
T PRK14075 1 MKLGIFYREE-----KEKEA-KFLKEKISKEHEVVEFCE--ASA-------S--GKVTADLIIVVGGDGTVLKAAKKV-- 61 (256)
T ss_pred CEEEEEeCcc-----HHHHH-HHHHHHHHHcCCeeEeec--ccc-------c--ccCCCCEEEEECCcHHHHHHHHHc--
Confidence 4677776655 33445 467778888887554322 111 1 112469999999999999988876
Q ss_pred CCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.+|+--|.+|+-.-|+. ..+.+..+++..+.+|...
T Consensus 62 --------~~Pilgin~G~lGfl~~--~~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 62 --------GTPLVGFKAGRLGFLSS--YTLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred --------CCCEEEEeCCCCccccc--cCHHHHHHHHHHHHcCCcE
Confidence 26665677776444442 2334556788888888754
No 40
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.56 E-value=0.014 Score=67.62 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHH-HcCCeEEEEEeCCchhHHHHH---------------HHhh-hcCCCCc
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFK-LAGFKLEVVKTTSAGHAKNLA---------------STVD-ISSCPDG 339 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~-~agi~~~v~~Te~~~hA~ela---------------~~~~-~~~~~D~ 339 (790)
.|++++||.||.. -.+.+++ ..+...|+ ..|+++.+.... +.++. ..+. ....+|.
T Consensus 193 ~p~~VgIV~n~~k--~~a~el~-~~I~~~L~~~~gi~V~ve~~~----a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~Dl 265 (508)
T PLN02935 193 DPQTVLIITKPNS--TSVRVLC-AEMVRWLREQKGLNIYVEPRV----KKELLSESSYFNFVQTWEDEKEILLLHTKVDL 265 (508)
T ss_pred CCCEEEEEecCCC--HHHHHHH-HHHHHHHHhcCCCEEEEechh----hhhhccccccccccccccccchhhhcccCCCE
Confidence 6899999999855 3444555 45666777 477766543211 11100 0100 1124799
Q ss_pred eEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 340 IICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 340 IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
||++|||||+-.++.-+... .+||--|.+|+=-=|+ -..+.+...++..|++|...
T Consensus 266 VIsiGGDGTlL~Aar~~~~~-------~iPILGIN~G~LGFLt--~i~~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKGP-------VPPVVPFSMGSLGFMT--PFHSEQYRDCLDAILKGPIS 321 (508)
T ss_pred EEEECCcHHHHHHHHHhccC-------CCcEEEEeCCCcceec--ccCHHHHHHHHHHHHcCCce
Confidence 99999999999999887543 4677667777633333 13345667888999998743
No 41
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.27 E-value=0.041 Score=59.59 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=62.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHH-HhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLAS-TVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~-~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+++.|++||.. -.+.++. .++...| ..|+++.+.. .......... .... ...|.||++|||||+-.++..+
T Consensus 1 m~i~iv~~~~~--~~~~~~~-~~i~~~l-~~g~~~~~~~--~~~~~~~~~~~~~~~-~~~D~vi~lGGDGT~L~a~~~~- 72 (271)
T PRK01185 1 MKVAFVIRKDC--KRCIKIA-KSIIELL-PPDWEIIYEM--EAAKALGMDGLDIEE-INADVIITIGGDGTILRTLQRA- 72 (271)
T ss_pred CEEEEEecCCC--HHHHHHH-HHHHHHH-hcCCEEEEec--hhhhhcCcccCcccc-cCCCEEEEEcCcHHHHHHHHHc-
Confidence 46889999744 3454555 3566666 4676654422 1111000000 0011 1369999999999998877654
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
..|+--|-+|+=.-|+. ..+.+...++..+++|...
T Consensus 73 ---------~~PilGIN~G~lGFL~~--~~~~~~~~~l~~i~~g~~~ 108 (271)
T PRK01185 73 ---------KGPILGINMGGLGFLTE--IEIDEVGSAIKKLIRGEYF 108 (271)
T ss_pred ---------CCCEEEEECCCCccCcc--cCHHHHHHHHHHHHcCCcE
Confidence 13555567777544442 3445667888999998643
No 42
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.10 E-value=0.078 Score=57.13 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=60.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+|+.+|.||.. ++.++. ++++..++..++ + .+.+|.||++|||||+-.++.-+..
T Consensus 1 ~~~~i~~~~~~---~s~~~~-~~l~~~~~~~~~------~---------------~~~~D~vi~iGGDGT~L~a~~~~~~ 55 (259)
T PRK00561 1 MKYKIFASTTP---QTEPVL-PKLKKVLKKKLA------V---------------EDGADYLFVLGGDGFFVSTAANYNC 55 (259)
T ss_pred CEEEEEeCCCH---HHHHHH-HHHHHHHhhCCC------c---------------cCCCCEEEEECCcHHHHHHHHHhcC
Confidence 46888888765 343333 456666654332 0 1236999999999999999988754
Q ss_pred CCCCCCCCCccEEEeecCCcchhhhhhcCCCChHH-HHHHHHhCceeEEeEEEEE
Q 003866 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVS-AALAIVKGGLTATDVFAVE 412 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~-Aa~~IlkG~~~~IDlg~V~ 412 (790)
. .+|+--|.+|+-.=|+- ..+.+..+ .+..+.+.......+.++.
T Consensus 56 ~-------~iPilGIN~G~lGFL~~--~~~~~~~~~~~~~l~~~~~~~r~~L~~~ 101 (259)
T PRK00561 56 A-------GCKVVGINTGHLGFYTS--FNETDLDQNFANKLDQLKFTQIDLLEVQ 101 (259)
T ss_pred C-------CCcEEEEecCCCccccc--cCHHHHHHHHHHHHhhCCeEEEEEEEEE
Confidence 3 47877788886444432 23344445 4455555554444454544
No 43
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=96.00 E-value=0.0049 Score=73.33 Aligned_cols=100 Identities=17% Similarity=0.053 Sum_probs=70.3
Q ss_pred EEEEEEEEEeeeccchhhh--------HHHHhh-cCcHHHHHHHHHHHhc--CCce--EEEEEEecCCcccccccccccc
Q 003866 420 HFGMTVSYYGFVSDVLELS--------EKYQKR-FGPLRYFVAGFLKFLC--LPKY--SYEVEYLPASKEDLEGKQSAER 486 (790)
Q Consensus 420 ~ffln~agiGfdAdV~~~s--------ek~K~~-lG~lrY~laal~~L~~--~r~y--~~~I~~~p~~~~~~~g~~~~~~ 486 (790)
..+.|++|||+||.|.-.+ |++|.+ ...+-|-+-+-+.|+. |+.. +++++-+ +
T Consensus 613 CVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECD--------------G 678 (1099)
T KOG1170|consen 613 CVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECD--------------G 678 (1099)
T ss_pred hhhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecC--------------C
Confidence 3577899999999997432 455532 3455666666677762 4433 3445543 3
Q ss_pred ceeecCceE-EEEec-CCCCCCCccCCCCCCCCCCCCCCCCCCCCceeEe
Q 003866 487 EVVDMSDLY-TDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTC 534 (790)
Q Consensus 487 e~ve~~~l~-l~V~N-r~~GGG~~iaP~As~~Dgil~~sr~~DG~LDVvc 534 (790)
+.++++.+. ++|.| ++|.||.++|-... -|-+++++.++|+.|+||.
T Consensus 679 ~~i~lP~LQGIviLNIpSyaGGtNFWGsnk-~dd~f~apSfDDriLEVVA 727 (1099)
T KOG1170|consen 679 VPIDLPSLQGIVILNIPSYAGGTNFWGSNK-DDDEFTAPSFDDRILEVVA 727 (1099)
T ss_pred cccCCcccceeEEEecccccCcccccCCCC-CCCcccCCCcccceeEEee
Confidence 456667775 88999 99999999997754 5677788889999999875
No 44
>PLN02929 NADH kinase
Probab=95.93 E-value=0.062 Score=59.04 Aligned_cols=94 Identities=21% Similarity=0.269 Sum_probs=59.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCc-
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSD- 378 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTG- 378 (790)
+.++.+|+++|+++..+. +. ++ ++.. .+.|.||++|||||+-.++..+ .. .+|+-=|-.|..
T Consensus 37 ~~~~~~L~~~gi~~~~v~--r~----~~-~~~~--~~~Dlvi~lGGDGT~L~aa~~~-~~-------~iPvlGIN~Gp~~ 99 (301)
T PLN02929 37 NFCKDILQQKSVDWECVL--RN----EL-SQPI--RDVDLVVAVGGDGTLLQASHFL-DD-------SIPVLGVNSDPTQ 99 (301)
T ss_pred HHHHHHHHHcCCEEEEee--cc----cc-cccc--CCCCEEEEECCcHHHHHHHHHc-CC-------CCcEEEEECCCcc
Confidence 567789999998875443 21 11 2211 2479999999999999999887 43 467655666741
Q ss_pred --------chhh--hhhcC------CCChHHHHHHHHhCceeEEeEEEE
Q 003866 379 --------NSLV--WTVLG------VRDPVSAALAIVKGGLTATDVFAV 411 (790)
Q Consensus 379 --------NdfA--rsllG------~~dp~~Aa~~IlkG~~~~IDlg~V 411 (790)
|.|- ++ +| +.+..+++..+++|....-...++
T Consensus 100 ~~~~~~~~~~~~~~r~-lGfL~~~~~~~~~~~L~~il~g~~~~~~r~~L 147 (301)
T PLN02929 100 KDEVEEYSDEFDARRS-TGHLCAATAEDFEQVLDDVLFGRLKPTELSRI 147 (301)
T ss_pred cccccccccccccccC-ccccccCCHHHHHHHHHHHHcCCceEEEeeeE
Confidence 2221 11 22 345667888999997554443333
No 45
>PLN02727 NAD kinase
Probab=95.63 E-value=0.13 Score=63.49 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCCchhHH-HH-----H-----HH-hhhcCCCCceEE
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTSAGHAK-NL-----A-----ST-VDISSCPDGIIC 342 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~a-gi~~~v~~Te~~~hA~-el-----a-----~~-~~~~~~~D~IVv 342 (790)
.++++++||.++.. .+...+. .+...|... |+++-+ .+...+.. .+ . .. -+.....|.||+
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~-eL~~~L~~~~gi~V~V--E~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv 749 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAK-EVASFLYHQEKMNVLV--EPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC 749 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHH-HHHHHHHhCCCeEEEE--ecchHHHhhccccccccceecccchhhcccCCCEEEE
Confidence 47899999999976 3445553 556677776 765533 22221111 00 0 00 011124699999
Q ss_pred EeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 343 VGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 343 vGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
+||||||-.++.-+... .+||--|-+|+--=|+- ..+.+..+++..|++|..
T Consensus 750 LGGDGTlLrAar~~~~~-------~iPILGINlGrLGFLTd--i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 750 LGGDGVILHASNLFRGA-------VPPVVSFNLGSLGFLTS--HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred ECCcHHHHHHHHHhcCC-------CCCEEEEeCCCcccccc--CCHHHHHHHHHHHHcCCc
Confidence 99999999999987544 47877788887443331 233455678888888864
No 46
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.06 E-value=0.19 Score=54.46 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=54.7
Q ss_pred hHHHHHHHcCCeEEEEEeCCc--hhHH----HHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 301 IVEPIFKLAGFKLEVVKTTSA--GHAK----NLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 301 ~I~plL~~agi~~~v~~Te~~--~hA~----ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
++...|++.|+++.+...... ++.. .. .++ ...+|.||++|||||+-.++..+... .+|+--|-
T Consensus 4 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~d~vi~iGGDGT~L~aa~~~~~~-------~~PilgIn 73 (272)
T PRK02231 4 NLFHWLKERGYQVLVEKEIAEQLNLPENHLASL-EEI--GQRAQLAIVIGGDGNMLGRARVLAKY-------DIPLIGIN 73 (272)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCccccccCCh-HHh--CcCCCEEEEECCcHHHHHHHHHhccC-------CCcEEEEe
Confidence 456678888887755331110 0000 00 122 12369999999999999999887543 46766668
Q ss_pred cCCcchhhhhhcCCCChHHHHHHHHh-Cce
Q 003866 375 AGSDNSLVWTVLGVRDPVSAALAIVK-GGL 403 (790)
Q Consensus 375 aGTGNdfArsllG~~dp~~Aa~~Ilk-G~~ 403 (790)
+|+-.=|+. ..+.+..+++..+++ |..
T Consensus 74 ~G~lGFL~~--~~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 74 RGNLGFLTD--IDPKNAYEQLEACLERGEF 101 (272)
T ss_pred CCCCccccc--CCHHHHHHHHHHHHhcCCc
Confidence 887444442 233445567777777 753
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.88 E-value=0.97 Score=48.50 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=28.6
Q ss_pred CCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCc
Q 003866 337 PDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 337 ~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTG 378 (790)
+|.||++|||||+-.+++.+... .+|+--|.+|+-
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~-------~~PvlGIN~G~l 60 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNS-------GKPVYGMNRGSV 60 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCC-------CCeEEEEeCCCC
Confidence 69999999999999999987654 477666777764
No 48
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=91.50 E-value=1.9 Score=46.88 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHH--HHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNL--ASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~el--a~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
++.++.++..-. +.... ..+...+...+..+.+.. +-....... ..+.+ .+.+|.|+++|||||+-.+++.+.
T Consensus 2 ~~~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~~~~d~ivvlGGDGtlL~~~~~~~ 76 (281)
T COG0061 2 KVGIVGRPDKPE--ALKIA-KRLYEFLKFKGVTVEVDQ-ELAEELKDFADYVDDD-EEKADLIVVLGGDGTLLRAARLLA 76 (281)
T ss_pred eEEEEecCCcHH--HHHHH-HHHHHHHHhcCceEEEec-hhhhhccccccccccc-ccCceEEEEeCCcHHHHHHHHHhc
Confidence 455666655433 43333 345556666665443322 111111110 01111 134799999999999999999887
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.. .+|+-=|-.|+- +|--. .-..+..+++..+++|..+
T Consensus 77 ~~-------~~pilgin~G~l-GFLt~-~~~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 77 RL-------DIPVLGINLGHL-GFLTD-FEPDELEKALDALLEGEYR 114 (281)
T ss_pred cC-------CCCEEEEeCCCc-ccccc-cCHHHHHHHHHHHhcCceE
Confidence 65 366666666632 22111 2234566778888887655
No 49
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=90.62 E-value=0.23 Score=54.61 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=64.2
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEE--eec
Q 003866 298 FHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGI--IPA 375 (790)
Q Consensus 298 ~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGI--IPa 375 (790)
+.+.+...|..+|++..++.-. .+.+.+ .+.|.||-+|||||+--....+.... .+.||| =|.
T Consensus 76 ~~~~~~~~l~k~giesklv~R~------~lsq~i---~waD~VisvGGDGTfL~Aasrv~~~~------~PViGvNtDP~ 140 (395)
T KOG4180|consen 76 AIKFCQEELSKAGIESKLVSRN------DLSQPI---RWADMVISVGGDGTFLLAASRVIDDS------KPVIGVNTDPT 140 (395)
T ss_pred HHHHHHHHHhhCCcceeeeehh------hccCcC---chhhEEEEecCccceeehhhhhhccC------CceeeecCCCC
Confidence 4456778899999987665422 233333 25799999999999988888776542 456676 377
Q ss_pred CCcchhhhhhcCCCChHHHHHHHHhCceeEE
Q 003866 376 GSDNSLVWTVLGVRDPVSAALAIVKGGLTAT 406 (790)
Q Consensus 376 GTGNdfArsllG~~dp~~Aa~~IlkG~~~~I 406 (790)
|+---++-..--..++..|+.++..|..+.+
T Consensus 141 ~Seg~lcL~~~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 141 GSEGHLCLPDKYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred cCcceEeccccCCCCcHHHHHHHHhccHHHh
Confidence 7766665321223568889999988876654
No 50
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=87.36 E-value=1.8 Score=43.19 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=50.3
Q ss_pred CcEEE--eccEEEEEEeccccccccCCcccC----------CCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCC
Q 003866 673 NWIVK--KGQYLGIMICNHACRTVQSAQVVA----------PRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLP 740 (790)
Q Consensus 673 ~W~~i--eG~Fv~V~~~N~s~~~~q~d~~~A----------P~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p 740 (790)
+|+.+ ...-.++.+.|++++.--.|..=. ....++||.|.++-+.+. +.|......+..+.++..-
T Consensus 64 dg~~~~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~~~~--~hl~~~~~g~~~~~rl~Q~ 141 (161)
T PF00609_consen 64 DGKEVDLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGFRGS--FHLGQIQAGLSSAKRLAQG 141 (161)
T ss_pred CCeeEeeecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEEEcCc--hhhhhhhhccCCceEeecC
Confidence 44444 345777888898876433343321 247789999999999865 5555555555555444332
Q ss_pred cEEEEEEEeeeeCCCCeeecCce
Q 003866 741 YVEYVKIKAGKHTHNSCGIDGEL 763 (790)
Q Consensus 741 ~Ve~~kvk~~~~~~~g~~vDGE~ 763 (790)
..++++-.. .+-.++||||+
T Consensus 142 --~~i~i~~~~-~~~~~QvDGEp 161 (161)
T PF00609_consen 142 --RPIRIETKE-NKVPFQVDGEP 161 (161)
T ss_pred --CEEEEEECC-CceeEEeCCCC
Confidence 222222111 13349999995
No 51
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=87.19 E-value=2 Score=48.85 Aligned_cols=53 Identities=32% Similarity=0.564 Sum_probs=46.5
Q ss_pred CCCCeEEEEEcCCCCCC--CchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHH
Q 003866 276 KSPPKMLVILNPRSGRG--RSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLA 328 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG--~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela 328 (790)
..|+|+.|++.|-=|.+ .+.+.|.+.|+|+|.++|++|+++....+|+.+.-+
T Consensus 65 ~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr~~v 119 (382)
T PF11711_consen 65 ELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIRAKV 119 (382)
T ss_pred CCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHHHHH
Confidence 47899999999998876 577899999999999999999999999999875543
No 52
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=86.99 E-value=3.2 Score=46.89 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te----~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+.+-+..+ .+ +.+...|+..|+++.++.-- ......++++.+.. ..+|.||++|| |++..+.
T Consensus 26 ~kr~livtd~~~~~~~g--~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~a 100 (383)
T cd08186 26 ISKVLLVTGKSAYKKSG--AW-DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGRE-FGAQAVIAIGG-GSPIDSA 100 (383)
T ss_pred CCEEEEEcCccHHhhcC--hH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-ccHHHHH
Confidence 37899998777643322 24 46778899999988766311 11334445544433 34799999999 5665555
Q ss_pred HHHH---cCCCC----------CCCCCccEEEeec--CCcchhhh
Q 003866 354 NGLL---SRGNQ----------KEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 354 NGL~---~r~d~----------~~~~~iPLGIIPa--GTGNdfAr 383 (790)
-.+. ..+.. .....+|+..||. |||--...
T Consensus 101 K~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~ 145 (383)
T cd08186 101 KSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDR 145 (383)
T ss_pred HHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCC
Confidence 4432 11100 0112479999997 78765554
No 53
>PRK13059 putative lipid kinase; Reviewed
Probab=85.82 E-value=0.74 Score=50.06 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=26.0
Q ss_pred eEEEEec-CCCCCCCccCCCCCCCCCCCCCCCCCCCCceeEecc
Q 003866 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSS 536 (790)
Q Consensus 494 l~l~V~N-r~~GGG~~iaP~As~~Dgil~~sr~~DG~LDVvcs~ 536 (790)
.++.|+| +++| |+.++|.|+ ++||.|||++..
T Consensus 190 ~~~~v~N~~~~G-g~~~~p~a~----------~~DG~Ldv~i~~ 222 (295)
T PRK13059 190 YLMLVFNGQTAG-NFNLAYKAE----------VDDGLLDVIIIK 222 (295)
T ss_pred EEEEEEcCcccc-CcccCCccc----------CCCCeEEEEEEc
Confidence 4577899 8776 579999999 789999987743
No 54
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=85.70 E-value=4.3 Score=45.71 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+..-+ . ..+ +.+...|+.+++++.++. ...+ ....++++.+.. ..+|.||.+|| |++..+.
T Consensus 23 ~~r~livt~~~~~~-~--g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~~D~A 96 (375)
T cd08194 23 GKRPLIVTDKVMVK-L--GLV-DKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKE-GGCDVIIALGG-GSPIDTA 96 (375)
T ss_pred CCeEEEEcCcchhh-c--chH-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHH
Confidence 36899998766542 1 234 468889999999887652 1221 223444444432 34799999998 6666655
Q ss_pred HHHH---cCCC---------CCCCCCccEEEeec--CCcch
Q 003866 354 NGLL---SRGN---------QKEGISIPIGIIPA--GSDNS 380 (790)
Q Consensus 354 NGL~---~r~d---------~~~~~~iPLGIIPa--GTGNd 380 (790)
-.+. ..+. ......+|+..||. |||--
T Consensus 97 Kaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE 137 (375)
T cd08194 97 KAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSE 137 (375)
T ss_pred HHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccc
Confidence 4432 1110 00123579999997 55443
No 55
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=85.54 E-value=4.4 Score=45.72 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++|+..+..-+ ...+ +.++..|+.+++++.++.- ..+ ....++++.+.. .++|.||.+|| |++..+.-
T Consensus 29 ~~~lvv~~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GS~iD~aK 102 (377)
T cd08176 29 KKALIVTDKGLVK---IGVV-EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK-EGCDFIISIGG-GSPHDCAK 102 (377)
T ss_pred CeEEEECCchHhh---cCcH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHH
Confidence 6788887765432 1233 5688899999988866521 122 223444444432 35799999999 56666554
Q ss_pred HHH---cCC---------CCCCCCCccEEEeec--CCcchhh
Q 003866 355 GLL---SRG---------NQKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL~---~r~---------d~~~~~~iPLGIIPa--GTGNdfA 382 (790)
.+. ..+ .......+|+..||. |||--..
T Consensus 103 ~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t 144 (377)
T cd08176 103 AIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVT 144 (377)
T ss_pred HHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccC
Confidence 432 110 000123589999997 6665544
No 56
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=84.69 E-value=6.1 Score=44.48 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-C-----CchhHHHHHHHhhhcCCCC---ceEEEeCchHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-T-----SAGHAKNLASTVDISSCPD---GIICVGGDGII 349 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T-e-----~~~hA~ela~~~~~~~~~D---~IVvvGGDGTl 349 (790)
++++||..+.-. +.+.+.+...|+.+|+++.++.- . .-....++++.+... +.| .||++|| |++
T Consensus 24 ~rvlvVtd~~v~-----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~-~~dr~~~IIAvGG-Gsv 96 (355)
T cd08197 24 DKYLLVTDSNVE-----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALAL-GATRRSVIVALGG-GVV 96 (355)
T ss_pred CeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCCcEEEEECC-cHH
Confidence 688999886532 22446788899999887654431 1 223344555554322 345 8888887 888
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..+.-.+...- ...+|+..||.
T Consensus 97 ~D~ak~~A~~~----~rgip~I~IPT 118 (355)
T cd08197 97 GNIAGLLAALL----FRGIRLVHIPT 118 (355)
T ss_pred HHHHHHHHHHh----ccCCCEEEecC
Confidence 88776654221 01589999998
No 57
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=84.49 E-value=1.5 Score=49.77 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHH----------------------HHHHhhhc
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKN----------------------LASTVDIS 334 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~e----------------------la~~~~~~ 334 (790)
.|++.++|.|+. ...-...+.+.++-+++... ++.++.-..-..... +..++ .
T Consensus 92 ~p~~~~lv~K~~--d~s~~~~~~Elv~~ll~~~~-~i~V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e~~~d~--~ 166 (409)
T KOG2178|consen 92 KPPKNLLVTKKN--DESVLEKFVELVEWLLQTFP-NITVYVEDKVAKDKQFSAGNLDESFGVKERILYWTTEGCDDL--P 166 (409)
T ss_pred CCCceEEEEcCC--cHHHHHHHHHHHHHHHhhCC-CeEEEechhhhhhhhhcccchhhcccchhceEeecccccccc--c
Confidence 678899999987 22222334456666666553 333333222222111 11121 2
Q ss_pred CCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCc
Q 003866 335 SCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (790)
Q Consensus 335 ~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~ 402 (790)
..+|.||++||||||--+.. |+++. -+|+--+-.||--=|. -+-..+..+.+..|+.|+
T Consensus 167 ~~~D~iItLGGDGTvL~aS~-LFq~~------VPPV~sFslGslGFLt--pf~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASS-LFQRS------VPPVLSFSLGSLGFLT--PFPFANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehh-hhcCC------CCCeEEeecCCccccc--cccHHHHHHHHHHHhcCc
Confidence 34799999999999987665 44442 3677777777532211 122345667888898887
No 58
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=84.19 E-value=0.91 Score=53.06 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=27.1
Q ss_pred EEEec-CCCCCCCccCCCCCCCCCCCCCCCCCCCCceeEecc
Q 003866 496 TDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSS 536 (790)
Q Consensus 496 l~V~N-r~~GGG~~iaP~As~~Dgil~~sr~~DG~LDVvcs~ 536 (790)
+.|+| +++|||+.++|.|+ ++||.||+++..
T Consensus 358 v~v~N~~~~Ggg~~iaP~A~----------l~DG~LDlviv~ 389 (481)
T PLN02958 358 VWLHNVPWGGEDTLAAPDAK----------FSDGYLDLILIK 389 (481)
T ss_pred EeeccCcccCCCcccCCccc----------CCCCeEEEEEEc
Confidence 45899 99999999999999 889999987743
No 59
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=83.90 E-value=7 Score=44.22 Aligned_cols=98 Identities=20% Similarity=0.320 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++|+..+..-+. ..+ +++...|+++|+++.++. ...+ +...+.++.+.. .++|.||.+|| |.+-.+.-
T Consensus 31 ~~~lvvtd~~~~~~---g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 31 KKALIVTDKTLVKC---GVV-AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA-SGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CEEEEEeCcchhhC---cch-HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHH
Confidence 68889887643321 133 567889999999887662 1122 233444444432 34799999999 56666554
Q ss_pred HH---HcCCC----C-------CCCCCccEEEeec--CCcchhh
Q 003866 355 GL---LSRGN----Q-------KEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL---~~r~d----~-------~~~~~iPLGIIPa--GTGNdfA 382 (790)
.+ ...++ | .....+|+..||. |||--..
T Consensus 105 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t 148 (382)
T PRK10624 105 AIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVT 148 (382)
T ss_pred HHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhc
Confidence 32 22110 0 0113479999996 6654443
No 60
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=83.87 E-value=4 Score=43.92 Aligned_cols=93 Identities=25% Similarity=0.351 Sum_probs=56.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE----eCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK----TTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~----Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
..++++||.-+.. .+.+.+.++..|+.+|+++.++. ........++...+. ...+|.||.+|| ||++.+
T Consensus 18 ~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vGg-G~i~D~ 90 (250)
T PF13685_consen 18 GLKKVLVVTDENT-----YKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALR-PKDADLIIGVGG-GTIIDI 90 (250)
T ss_dssp T-SEEEEEEETTH-----HHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS---TT--EEEEEES-HHHHHH
T ss_pred CCCcEEEEEcCCH-----HHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhc-ccCCCEEEEeCC-cHHHHH
Confidence 3478999987653 23445678889999999887553 122223344444442 234789999988 999999
Q ss_pred HHHHHcCCCCCCCCCccEEEeecC-Ccchhh
Q 003866 353 LNGLLSRGNQKEGISIPIGIIPAG-SDNSLV 382 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIPaG-TGNdfA 382 (790)
.--..... ++|+..+|.= |.|+||
T Consensus 91 ~K~~A~~~------~~p~isVPTa~S~DG~a 115 (250)
T PF13685_consen 91 AKYAAFEL------GIPFISVPTAASHDGFA 115 (250)
T ss_dssp HHHHHHHH------T--EEEEES--SSGGGT
T ss_pred HHHHHHhc------CCCEEEecccccccccc
Confidence 98876542 6899999974 445565
No 61
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=83.79 E-value=5.8 Score=44.41 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=59.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++|+.-+.+-+..+ .+ +.+...|+.+|+++.++. ...+ ....++++.+.. .++|.||++|| |++..+.-
T Consensus 26 ~r~lvVt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SL-DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK-FNADFVIGIGG-GSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcC--cH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 7899998877643322 23 467788999998887652 1122 233444444433 34799999999 66666665
Q ss_pred HHH---cCCC--------CCCCCCccEEEeec--CCcchhhh
Q 003866 355 GLL---SRGN--------QKEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 355 GL~---~r~d--------~~~~~~iPLGIIPa--GTGNdfAr 383 (790)
.+. ..+. ......+|+..||. |||--...
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 101 AIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 432 1100 00123589999997 66655554
No 62
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=83.01 E-value=7 Score=43.19 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCC-eEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGF-KLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi-~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+|++||..+.. + +.+...|+..++ .+..+.........++.+.+......|.||++|| |++..+.-.+.
T Consensus 26 ~r~livtd~~~--------~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 26 GRVAVVSGPGV--------G-EQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred CceEEEECCcH--------H-HHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 68999987765 3 356667777776 4443332223334444444432223699999998 88888887776
Q ss_pred cCCCCCCCCCccEEEeecCCcc
Q 003866 358 SRGNQKEGISIPIGIIPAGSDN 379 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGN 379 (790)
... .+|+..||.=.++
T Consensus 96 ~~~------~~p~i~vPTt~~t 111 (331)
T cd08174 96 FLR------GIPLSVPTTNLND 111 (331)
T ss_pred hhc------CCCEEEecCcccc
Confidence 532 5899999975444
No 63
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.83 E-value=5.4 Score=44.39 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE-EeCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV-KTTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~-~Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||.-+.+.+ ..+ +.+...|+.+++++.+. ....+ ....++++.+.. ...|.||++|| |++-.+.-.
T Consensus 23 ~r~livt~~~~~~----~~~-~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GS~iD~aK~ 95 (351)
T cd08170 23 KRALIIADEFVLD----LVG-AKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD-NGADVVIGIGG-GKTLDTAKA 95 (351)
T ss_pred CeEEEEECHHHHH----HHH-HHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh-cCCCEEEEecC-chhhHHHHH
Confidence 7788887443322 233 67888999998876432 22222 233444444432 35799999999 777777766
Q ss_pred HHcCCCCCCCCCccEEEeec--CCcch
Q 003866 356 LLSRGNQKEGISIPIGIIPA--GSDNS 380 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa--GTGNd 380 (790)
+... ..+|+..||. |||--
T Consensus 96 ia~~------~~~P~iaIPTTagTgse 116 (351)
T cd08170 96 VADY------LGAPVVIVPTIASTDAP 116 (351)
T ss_pred HHHH------cCCCEEEeCCccccCcc
Confidence 6432 1489999997 55543
No 64
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=82.69 E-value=6.1 Score=44.65 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||.-+.+....+ .+ +.++..|+.+|+++.++.- ..+ ....+.++.+. ..++|.||.+|| |++..+.-
T Consensus 29 ~r~livt~~~~~~~~~--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~-~~~~D~IIaiGG-GS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNG--LY-DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCK-EEKVDFILAVGG-GSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcC--cH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-hHHHHHHH
Confidence 7888887776654322 23 4677889999988765521 111 23334444433 235799999999 66666665
Q ss_pred HHHc---CCC---------CCCCCCccEEEeec--CCcchhh
Q 003866 355 GLLS---RGN---------QKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL~~---r~d---------~~~~~~iPLGIIPa--GTGNdfA 382 (790)
++.- .+. ......+|+..||. |||--..
T Consensus 104 ~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t 145 (382)
T cd08187 104 AIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMN 145 (382)
T ss_pred HHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccC
Confidence 4421 100 00113579999996 6654443
No 65
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=82.40 E-value=6.5 Score=43.65 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC-----CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT-----SAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te-----~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
+|++||..+..-+ .+.+.+...|+..++++.++..+ ......++++.+.. ..|.||++|| |++..+.
T Consensus 25 ~kvlivtd~~~~~-----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGG-Gsv~D~a 96 (332)
T cd08549 25 SKIMIVCGNNTYK-----VAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGS-GTIIDLV 96 (332)
T ss_pred CcEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECC-cHHHHHH
Confidence 6889998866532 22357788899999877665322 12334455555543 4699999999 7888877
Q ss_pred HHHHcCCCCCCCCCccEEEeecC
Q 003866 354 NGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIPaG 376 (790)
-.+.-. ..+|+..||.=
T Consensus 97 K~iA~~------~gip~I~VPTT 113 (332)
T cd08549 97 KFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHH------cCCCEEEeCCC
Confidence 766422 25899999963
No 66
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.23 E-value=4.7 Score=44.87 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=54.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+-. ..+ +++...|+.+++++.++.- ..+ ....++++.+. ...+|.||.+|| |++..+.-
T Consensus 23 ~r~liv~d~~~~~----~~~-~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~-~~~~d~iiavGG-Gs~~D~aK 95 (345)
T cd08171 23 KKVVVIGGKTALA----AAK-DKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPA-VQEADMIFAVGG-GKAIDTVK 95 (345)
T ss_pred CEEEEEeCHHHHH----HHH-HHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHh-hcCCCEEEEeCC-cHHHHHHH
Confidence 7888887765431 223 6788899999987765432 111 22233333332 235799999999 78888877
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.+...- .+|+..||.
T Consensus 96 ~ia~~~------~~p~i~VPT 110 (345)
T cd08171 96 VLADKL------GKPVFTFPT 110 (345)
T ss_pred HHHHHc------CCCEEEecC
Confidence 764431 479999997
No 67
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=81.73 E-value=14 Score=42.24 Aligned_cols=101 Identities=19% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh----HHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH----AKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h----A~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
.-+|.+|+.-|.--+ ...+ +.+...|++++++|.++.--.++- ..+.++.+. +..+|.||++|| |..-.+
T Consensus 28 g~~r~liVTd~~~~~---~g~~-~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~-~~~~D~iIalGG-GS~~D~ 101 (377)
T COG1454 28 GAKRALIVTDRGLAK---LGLL-DKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAR-EFGPDTIIALGG-GSVIDA 101 (377)
T ss_pred CCCceEEEECCcccc---chhH-HHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCC-ccHHHH
Confidence 347889998876321 1234 567789999999888774333332 222223332 335799999999 555555
Q ss_pred HHHH---HcCCC---------CCCCCCccEEEeec--CCcchhhh
Q 003866 353 LNGL---LSRGN---------QKEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 353 lNGL---~~r~d---------~~~~~~iPLGIIPa--GTGNdfAr 383 (790)
+-++ ...+. .......||-.||. |||--..+
T Consensus 102 AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~ 146 (377)
T COG1454 102 AKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTP 146 (377)
T ss_pred HHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcC
Confidence 5543 23220 00122378999996 88877765
No 68
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=80.01 E-value=12 Score=41.49 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
+|++||..+...+ .+.+.++..|+.++ .+.++....+ ....++++.+.. ...|.||++|| |++..+.-.+
T Consensus 26 ~~~liv~d~~~~~-----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~d~iIaiGG-Gs~~D~aK~~ 97 (339)
T cd08173 26 GRVLVVTGPTTKS-----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARD-IGADFVIGVGG-GRVIDVAKVA 97 (339)
T ss_pred CeEEEEECCchHH-----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhh-cCCCEEEEeCC-chHHHHHHHH
Confidence 6889998766532 23367888998888 7666544333 233445555433 34799999998 8888888777
Q ss_pred HcCCCCCCCCCccEEEeecCCc
Q 003866 357 LSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTG 378 (790)
... ..+|+..||.=.+
T Consensus 98 a~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 98 AYK------LGIPFISVPTAAS 113 (339)
T ss_pred HHh------cCCCEEEecCccc
Confidence 533 2589999997443
No 69
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=79.90 E-value=12 Score=41.89 Aligned_cols=92 Identities=21% Similarity=0.357 Sum_probs=52.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+- .. +.+...|+.+++++.++.- ..+ ....++++.+.. .++|.||++|| |++..+.-
T Consensus 24 ~~~livtd~~~~------~~-~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-Gs~~D~aK 94 (367)
T cd08182 24 KRVLLVTGPRSA------IA-SGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLRE-FGPDAVLAVGG-GSVLDTAK 94 (367)
T ss_pred CeEEEEeCchHH------HH-HHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHh-cCcCEEEEeCC-cHHHHHHH
Confidence 688888765543 12 4567788888887765522 121 233444444432 34799999998 56666554
Q ss_pred HHHc---CC-------------CCCCCCCccEEEeec--CCcc
Q 003866 355 GLLS---RG-------------NQKEGISIPIGIIPA--GSDN 379 (790)
Q Consensus 355 GL~~---r~-------------d~~~~~~iPLGIIPa--GTGN 379 (790)
.+.. .+ .......+|+..||. |||-
T Consensus 95 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgs 137 (367)
T cd08182 95 ALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGS 137 (367)
T ss_pred HHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchh
Confidence 4321 11 000123589999997 4444
No 70
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=79.41 E-value=11 Score=41.90 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=55.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC------CchhHHHHHHHhhhcC--CCCceEEEeCchH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT------SAGHAKNLASTVDISS--CPDGIICVGGDGI 348 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te------~~~hA~ela~~~~~~~--~~D~IVvvGGDGT 348 (790)
..++++||..+..-+ .+.+.+...|+.+|+++.++.-. .-....++++.+...+ ..|.||++|| |+
T Consensus 23 ~~~~~livtd~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 23 KGSKILIVTDENVAP-----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 347899999866643 23367888999988877654322 2234455555443221 1388898887 77
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 349 INEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 349 lnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
+..+.-.+...- ...+|+..||.
T Consensus 97 v~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHH----hcCCCeEEcch
Confidence 777776654210 01588999995
No 71
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=78.96 E-value=9.9 Score=43.59 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
+|++||.-+..-+ . ..+ +.+...|+.+|+++.++.- ..+ ....+.++.+. +.++|.||.+||= .+-.+
T Consensus 24 ~~vlivt~~~~~~-~--g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~-~~~~D~IIaiGGG-SviD~ 95 (414)
T cd08190 24 RRVCLVTDPNLAQ-L--PPV-KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAK-KGQFDAFVAVGGG-SVIDT 95 (414)
T ss_pred CeEEEEECcchhh-c--chH-HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHH-hcCCCEEEEeCCc-cHHHH
Confidence 6888888765322 1 223 4677789999998876531 122 22334444433 2347999999994 44443
No 72
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=78.11 E-value=9.1 Score=43.53 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||.-+..-+ ...+ +.+...|+.+|+++.++.- ..+ ....++++.+.. .++|.||++|| |.+-.+.
T Consensus 21 ~~k~liVtd~~~~~---~g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~A 94 (398)
T cd08178 21 KKRAFIVTDRFMVK---LGYV-DKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNS-FKPDTIIALGG-GSPMDAA 94 (398)
T ss_pred CCeEEEEcChhHHh---CccH-HHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHH
Confidence 37888887543211 1133 5688899999988765521 122 234455544433 35799999999 4444444
Q ss_pred HH
Q 003866 354 NG 355 (790)
Q Consensus 354 NG 355 (790)
-.
T Consensus 95 K~ 96 (398)
T cd08178 95 KI 96 (398)
T ss_pred HH
Confidence 43
No 73
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=78.11 E-value=15 Score=40.90 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC------CchhHHHHHHHhhhcC--CCCceEEEeCchHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT------SAGHAKNLASTVDISS--CPDGIICVGGDGII 349 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te------~~~hA~ela~~~~~~~--~~D~IVvvGGDGTl 349 (790)
.+|++||.++..-+ . +.+.+.+.|+.+|+++.++.-. ......++++.+...+ ..|.||++|| |++
T Consensus 20 ~~~~livtd~~~~~----~-~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVAD----L-YADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchHH----H-HHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 47899998755532 2 3367888999998876532221 1233455555443221 2488999988 777
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..++-.+.... ...+|+..||.
T Consensus 94 ~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHH----ccCCCEEEecC
Confidence 77776654210 01579999996
No 74
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=77.72 E-value=16 Score=41.08 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eC-----CchhHHHHHHHhhhcC--CCCceEEEeCchHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TT-----SAGHAKNLASTVDISS--CPDGIICVGGDGII 349 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~-Te-----~~~hA~ela~~~~~~~--~~D~IVvvGGDGTl 349 (790)
.++++||..+...+ .+.+.+...|+.+++++.++. .. .-....++++.+...+ ..|.||++|| |++
T Consensus 31 ~~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 104 (358)
T PRK00002 31 GKKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVI 104 (358)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHH
Confidence 36889999765532 244678889999998877542 21 2233444444442211 2488999988 788
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..++-.+.... ...+|+..||.
T Consensus 105 ~D~aK~iA~~~----~~gip~i~IPT 126 (358)
T PRK00002 105 GDLAGFAAATY----MRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHh----cCCCCEEEcCc
Confidence 88877664211 11589999997
No 75
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=77.60 E-value=15 Score=36.76 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=44.9
Q ss_pred CCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHHHHHc
Q 003866 290 GRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 290 GkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlNGL~~ 358 (790)
|......+. +++...|++.|+.|++.... .++...++++++... +.+. |.++|+++-|--|+-++-.
T Consensus 8 gs~SD~~~~-~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~-~~~viIa~AG~~a~Lpgvva~~t~ 78 (150)
T PF00731_consen 8 GSTSDLPIA-EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEAR-GADVIIAVAGMSAALPGVVASLTT 78 (150)
T ss_dssp SSGGGHHHH-HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTT-TESEEEEEEESS--HHHHHHHHSS
T ss_pred CCHHHHHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccC-CCEEEEEECCCcccchhhheeccC
Confidence 444444555 46778999999999988775 456667778877542 3454 5677999999999999863
No 76
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=77.34 E-value=9.7 Score=42.47 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eCC--chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TTS--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~-Te~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||..+.+-+ ..+ +++...|+.+++.+.++. ... .....++++.+.. ..+|.||++|| |++..+.-.
T Consensus 23 ~~~liv~~~~~~~----~~~-~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIavGG-Gs~~D~aK~ 95 (349)
T cd08550 23 SKVAVVGGKTVLK----KSR-PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEE-QEADVIIGVGG-GKTLDTAKA 95 (349)
T ss_pred CeEEEEEChHHHH----HHH-HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEEecC-cHHHHHHHH
Confidence 6788888766543 223 578888998887543332 211 2233444444432 34799999998 788888877
Q ss_pred HHcCCCCCCCCCccEEEeec
Q 003866 356 LLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa 375 (790)
+.... .+|+..||.
T Consensus 96 ia~~~------~~p~i~VPT 109 (349)
T cd08550 96 VADRL------DKPIVIVPT 109 (349)
T ss_pred HHHHc------CCCEEEeCC
Confidence 75431 479999997
No 77
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=76.81 E-value=14 Score=41.40 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch--hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG--HAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~--hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
++++||..+...+ .+.+.++..|+..+ ++.++....+. ...++++.+.. .+.|.||++|| |++..+.-.+
T Consensus 35 ~~~livtd~~~~~-----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~-~~~d~IIaiGG-Gsv~D~ak~v 106 (350)
T PRK00843 35 GRALIVTGPTTKK-----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKD-VNAGFLIGVGG-GKVIDVAKLA 106 (350)
T ss_pred CeEEEEECCcHHH-----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhc-cCCCEEEEeCC-chHHHHHHHH
Confidence 6899998877642 23356778888887 66655443332 33455555433 24699999998 8888888776
Q ss_pred HcCCCCCCCCCccEEEeecC
Q 003866 357 LSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaG 376 (790)
.-. ..+|+..||.=
T Consensus 107 A~~------rgip~I~IPTT 120 (350)
T PRK00843 107 AYR------LGIPFISVPTA 120 (350)
T ss_pred HHh------cCCCEEEeCCC
Confidence 532 25899999963
No 78
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=76.52 E-value=17 Score=41.13 Aligned_cols=98 Identities=24% Similarity=0.265 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+..-+. ..+ +.+...|+..++++.++. ...+ ....+.++.+.. ...|.||++|| |.+-.+.-
T Consensus 29 ~~~livt~~~~~~~---~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GsviD~AK 102 (377)
T cd08188 29 KKVLLVSDPGVIKA---GWV-DRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLE-NGCDVIIAVGG-GSPIDCAK 102 (377)
T ss_pred CeEEEEeCcchhhC---ccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 68888876543211 123 467788999998887652 1122 223444444332 34799999999 55555553
Q ss_pred H---HHcCCC---------CCCCCCccEEEeec--CCcchhh
Q 003866 355 G---LLSRGN---------QKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 G---L~~r~d---------~~~~~~iPLGIIPa--GTGNdfA 382 (790)
. ++..+. ......+|+..||. |||--..
T Consensus 103 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t 144 (377)
T cd08188 103 GIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVS 144 (377)
T ss_pred HHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 2 222110 00112478999997 6664444
No 79
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.69 E-value=9.9 Score=42.34 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-CCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T-e~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+|++||..+..- .. +.+.++..|+..++.+.++.- .......+++..+.. .++|.||++|| |++..+.-.+.
T Consensus 24 ~~~liv~d~~~~----~~-~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~iIavGG-Gs~~D~aK~ia 96 (347)
T cd08172 24 KRPLIVTGPRSW----AA-AKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKE-NGADVIIGIGG-GKVLDTAKAVA 96 (347)
T ss_pred CeEEEEECHHHH----HH-HHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHHHHH
Confidence 789999987762 22 335677777666665544321 223344455555433 34799999998 88888887775
Q ss_pred cCCCCCCCCCccEEEeec--CCcchhh
Q 003866 358 SRGNQKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPa--GTGNdfA 382 (790)
... .+|+..||. |||-...
T Consensus 97 ~~~------~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 97 DRL------GVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHh------CCCEEEecCccccCcccc
Confidence 432 479999997 5554433
No 80
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=75.47 E-value=17 Score=40.87 Aligned_cols=89 Identities=13% Similarity=0.282 Sum_probs=55.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE-Ee-----CCchhHHHHHHHhhhc---CCCCceEEEeCch
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV-KT-----TSAGHAKNLASTVDIS---SCPDGIICVGGDG 347 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~-~T-----e~~~hA~ela~~~~~~---~~~D~IVvvGGDG 347 (790)
..++++||..+..-+ .+.+.+...|+.+|+++..+ .. ..-....++++.+... ..+|.||++|| |
T Consensus 25 ~~~~~lvVtd~~v~~-----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G 98 (354)
T cd08199 25 GSGRRFVVVDQNVDK-----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-G 98 (354)
T ss_pred CCCeEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-c
Confidence 468899999776532 23357888999899887753 22 1223444555444321 11388888887 7
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 348 IINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 348 TlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
++..++-.+...- ...+|+..||.
T Consensus 99 ~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 99 VLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 8888777765210 01579999997
No 81
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=73.75 E-value=22 Score=40.42 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--C--chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++++|+.-+..- ....+ +.+...|+.+|+.+.++.-. . .....+.++.+.. .+.|.||.+||=-.+ .+.-
T Consensus 32 ~~~livt~~~~~---~~g~~-~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~-~~~D~IiaiGGGS~i-D~AK 105 (383)
T PRK09860 32 TRTLIVTDNMLT---KLGMA-GDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKE-NNCDSVISLGGGSPH-DCAK 105 (383)
T ss_pred CEEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHH-cCCCEEEEeCCchHH-HHHH
Confidence 678887654221 12234 47888999999887655321 1 2333444444432 357999999994443 3333
Q ss_pred HH---HcCCC---------CCCCCCccEEEeec--CCcchhhh
Q 003866 355 GL---LSRGN---------QKEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 355 GL---~~r~d---------~~~~~~iPLGIIPa--GTGNdfAr 383 (790)
.+ +..+. ......+|+..||. |||--...
T Consensus 106 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~ 148 (383)
T PRK09860 106 GIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTR 148 (383)
T ss_pred HHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCc
Confidence 32 21110 00113579999997 77765544
No 82
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=73.66 E-value=22 Score=39.61 Aligned_cols=84 Identities=21% Similarity=0.314 Sum_probs=54.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------chhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~------~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
+|++||..+..- ... .+++...|+..++++.++.-.. .....++++.+.. ..|.||++|| |.+-.+
T Consensus 24 ~~~livtd~~~~----~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~IIaIGG-Gs~~D~ 95 (348)
T cd08175 24 KKALIVADENTY----AAA-GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLIIAVGS-GTINDI 95 (348)
T ss_pred CcEEEEECCcHH----HHH-HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEEEEECC-cHHHHH
Confidence 678888765432 112 2578889999998776543221 2233445555432 4799999999 778888
Q ss_pred HHHHHcCCCCCCCCCccEEEeecC
Q 003866 353 LNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
.-.+... ..+|+..||.=
T Consensus 96 aK~vA~~------~~~p~i~IPTT 113 (348)
T cd08175 96 TKYVSYK------TGIPYISVPTA 113 (348)
T ss_pred HHHHHHh------cCCCEEEecCc
Confidence 7777543 25899999963
No 83
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=73.51 E-value=27 Score=39.61 Aligned_cols=98 Identities=22% Similarity=0.369 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC---c-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS---A-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~---~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+...+ ...+ +.+...|+.+++++.++.-.. + ....+.++.+. +..+|.||.+|| |.+..+.-
T Consensus 23 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~-~~~~D~IIaiGG-GS~iD~aK 96 (386)
T cd08191 23 SRALIVTDERMAG---TPVF-AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAA-RAGPDVIIGLGG-GSCIDLAK 96 (386)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHH-hcCCCEEEEeCC-chHHHHHH
Confidence 7889998765543 1234 467888999999887663211 1 12233333332 235799999998 66666655
Q ss_pred HHH---cCCC---------CCCCCCccEEEeec--CCcchhh
Q 003866 355 GLL---SRGN---------QKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL~---~r~d---------~~~~~~iPLGIIPa--GTGNdfA 382 (790)
.+. ..+. ......+|+..||. |||--..
T Consensus 97 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t 138 (386)
T cd08191 97 IAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVT 138 (386)
T ss_pred HHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhC
Confidence 542 2110 00112579999996 5554433
No 84
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=71.80 E-value=14 Score=41.56 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=53.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||..+..- .. +.+.+...|+.+++++.+... +.. ....++++.+. +.+.|.||++|| |++..+.-.
T Consensus 30 ~~~livtd~~~~----~~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~-~~~~d~IIavGG-Gsv~D~aK~ 102 (366)
T PRK09423 30 KRALVIADEFVL----GI-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAE-ENGCDVVIGIGG-GKTLDTAKA 102 (366)
T ss_pred CEEEEEEChhHH----HH-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecC-hHHHHHHHH
Confidence 788888865542 22 336788899998887633222 111 22334444432 234799999999 778887777
Q ss_pred HHcCCCCCCCCCccEEEeec
Q 003866 356 LLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa 375 (790)
+... ..+|+..||.
T Consensus 103 iA~~------~~~p~i~IPT 116 (366)
T PRK09423 103 VADY------LGVPVVIVPT 116 (366)
T ss_pred HHHH------cCCCEEEeCC
Confidence 6533 1589999997
No 85
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=71.12 E-value=20 Score=39.78 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCC--chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTS--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+...+. ..+ +.+...|+.. +++.++. ... .....++++.+.. .++|.||.+|| |.+-.+.-
T Consensus 23 ~~~lvv~~~~~~~~---g~~-~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IiaiGG-Gs~~D~aK 95 (332)
T cd08180 23 KRVLIVTDPFMVKS---GML-DKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLD-FKPDIVIALGG-GSAIDAAK 95 (332)
T ss_pred CeEEEEeCchhhhC---ccH-HHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEECC-chHHHHHH
Confidence 78999987644321 123 4677788776 6665542 112 2223344444432 35799999999 55555555
Q ss_pred HH---HcCCCCCCCCCccEEEeec--CCcc
Q 003866 355 GL---LSRGNQKEGISIPIGIIPA--GSDN 379 (790)
Q Consensus 355 GL---~~r~d~~~~~~iPLGIIPa--GTGN 379 (790)
.+ ..... ....+|+..||. |||-
T Consensus 96 a~a~~~~~~~--~~~~~p~i~VPTtagtgs 123 (332)
T cd08180 96 AIIYFAKKLG--KKKKPLFIAIPTTSGTGS 123 (332)
T ss_pred HHHHHHhCCC--CCCCCCEEEeCCCCcchH
Confidence 43 22110 122489999996 6653
No 86
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=70.40 E-value=25 Score=39.71 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+-+.. ..+ +++...|+.+|+++.++.- ..+ ....+.++.+.. ..+|.||++|| |.+-.+.-
T Consensus 24 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFL-DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE-FEPDWIIALGG-GSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhC--ChH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHHH
Confidence 678888765543322 233 5677899999998876532 122 223444444432 35799999999 44444443
Q ss_pred HH---HcCCC--C----------CCCCCccEEEeec--CCcchhh
Q 003866 355 GL---LSRGN--Q----------KEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL---~~r~d--~----------~~~~~iPLGIIPa--GTGNdfA 382 (790)
.+ +..+. . .....+|+..||. |||--..
T Consensus 99 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t 143 (375)
T cd08179 99 AMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVT 143 (375)
T ss_pred HHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhC
Confidence 33 22211 0 0012479999997 6664443
No 87
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=69.58 E-value=27 Score=38.41 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te----~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+..-+ ..+ +.+...|+.+ +++.++.-. ......++++.+.. ...|.||++|| |++..+.
T Consensus 23 ~~~~liv~~~~~~~----~~~-~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-Gs~~D~a 94 (332)
T cd07766 23 FDRALVVSDEGVVK----GVG-EKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIAVGG-GSTLDTA 94 (332)
T ss_pred CCeEEEEeCCchhh----hHH-HHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEEeCC-chHHHHH
Confidence 36899998766543 223 5677788877 776655321 22344555555543 34799999987 7777777
Q ss_pred HHHHcCCCCCCCCCccEEEeec--CCc
Q 003866 354 NGLLSRGNQKEGISIPIGIIPA--GSD 378 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIPa--GTG 378 (790)
-.+...-. ..+|+..||. |||
T Consensus 95 K~ia~~~~----~~~p~i~iPTt~~tg 117 (332)
T cd07766 95 KAVAALLN----RGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHhc----CCCCEEEEeCCCchh
Confidence 66543210 1589999997 444
No 88
>PRK06756 flavodoxin; Provisional
Probab=69.29 E-value=22 Score=34.34 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe---CchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GDGTlnEVlNG 355 (790)
++++||+ .|..|...++. +.|...|+..|++++++........ .++. .+|.|+++. |+|.+...+..
T Consensus 2 mkv~IiY--~S~tGnTe~vA-~~ia~~l~~~g~~v~~~~~~~~~~~----~~~~---~~d~vi~gspt~~~g~~p~~~~~ 71 (148)
T PRK06756 2 SKLVMIF--ASMSGNTEEMA-DHIAGVIRETENEIEVIDIMDSPEA----SILE---QYDGIILGAYTWGDGDLPDDFLD 71 (148)
T ss_pred ceEEEEE--ECCCchHHHHH-HHHHHHHhhcCCeEEEeehhccCCH----HHHh---cCCeEEEEeCCCCCCCCcHHHHH
Confidence 5788888 45556666666 4677788888988877654332221 2222 357776653 67766553333
Q ss_pred HHcCCCCCCCCCccEEEeecC
Q 003866 356 LLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPaG 376 (790)
++..-........+++++-.|
T Consensus 72 fl~~l~~~~l~~k~~~~fgt~ 92 (148)
T PRK06756 72 FYDAMDSIDLTGKKAAVFGSC 92 (148)
T ss_pred HHHHHhcCCCCCCEEEEEeCC
Confidence 332100011234566665443
No 89
>PRK10586 putative oxidoreductase; Provisional
Probab=69.06 E-value=34 Score=38.74 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+|++||.-+++ .+.....+...|+++++.+..+.-+. ..+..++++... ...|.||.+|| |.+..+.-.+.
T Consensus 35 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~--~~~d~iiavGG-Gs~iD~aK~~a 106 (362)
T PRK10586 35 SRAVWIYGERA-----IAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASG--DDRQVVIGVGG-GALLDTAKALA 106 (362)
T ss_pred CeEEEEEChHH-----HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc--cCCCEEEEecC-cHHHHHHHHHH
Confidence 67888865433 22233456778898888775443222 233445554442 24699999998 67777777776
Q ss_pred cCCCCCCCCCccEEEeecCCcchh
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSL 381 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdf 381 (790)
... .+|+..||.=.+++-
T Consensus 107 ~~~------~~p~i~vPT~a~t~s 124 (362)
T PRK10586 107 RRL------GLPFVAIPTIAATCA 124 (362)
T ss_pred hhc------CCCEEEEeCCccccc
Confidence 442 589999998555543
No 90
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=68.64 E-value=27 Score=39.40 Aligned_cols=93 Identities=18% Similarity=0.341 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--C--CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--T--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e--~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||.-+.-.+ ...+ +.+...|+++++++.++.- . ......++++.+.. ..+|.||++|| |++..+.-
T Consensus 27 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-Gs~iD~aK 100 (376)
T cd08193 27 KRVLVVTDPGILK---AGLI-DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARA-AGADGVIGFGG-GSSMDVAK 100 (376)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6788887643211 1234 4677889999988765421 1 12234445555433 35799999999 66666554
Q ss_pred HHH---cCCC---------CCCCCCccEEEeecCC
Q 003866 355 GLL---SRGN---------QKEGISIPIGIIPAGS 377 (790)
Q Consensus 355 GL~---~r~d---------~~~~~~iPLGIIPaGT 377 (790)
.+. ..+. ......+|+..||.=.
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 101 LVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 432 1110 0011257999999733
No 91
>PLN02834 3-dehydroquinate synthase
Probab=68.09 E-value=28 Score=40.47 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE---EeC-----CchhHHHHHHHhhhcC--CCCceEEEeCch
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV---KTT-----SAGHAKNLASTVDISS--CPDGIICVGGDG 347 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~---~Te-----~~~hA~ela~~~~~~~--~~D~IVvvGGDG 347 (790)
.+|++||.++... +.+.+.+...|+.+|+++.++ ... ......++++.+...+ ..|.||++|| |
T Consensus 100 g~rvlIVtD~~v~-----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-G 173 (433)
T PLN02834 100 GKRVLVVTNETVA-----PLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-G 173 (433)
T ss_pred CCEEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-h
Confidence 3789999977653 224467888999999876552 111 2233344444443221 1248888887 7
Q ss_pred HHHHHHHHH---HcCCCCCCCCCccEEEeec
Q 003866 348 IINEVLNGL---LSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 348 TlnEVlNGL---~~r~d~~~~~~iPLGIIPa 375 (790)
++..++-.+ +.+ .+|+..||.
T Consensus 174 sv~D~ak~~A~~y~r-------giplI~VPT 197 (433)
T PLN02834 174 VIGDMCGFAAASYQR-------GVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHHHHhcC-------CCCEEEECC
Confidence 777777644 333 589999998
No 92
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=67.49 E-value=14 Score=41.42 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHH--H
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINE--V 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnE--V 352 (790)
+|++||..+ +-... ..+ +.+...|++.++++.++. ...+ .+..++++.+.. .++|.||++||=-++-- +
T Consensus 22 gr~lvVt~~-~~~~~--~~~-~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGGS~~D~aK~ 96 (366)
T PF00465_consen 22 GRVLVVTDP-SLSKS--GLV-DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARK-FGADCIIAIGGGSVMDAAKA 96 (366)
T ss_dssp TEEEEEEEH-HHHHH--THH-HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHH-TTSSEEEEEESHHHHHHHHH
T ss_pred CCEEEEECc-hHHhC--ccH-HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCEEEEcCCCCcCcHHHH
Confidence 399999988 43222 234 578889999999987665 2222 233444554433 35799999999555432 3
Q ss_pred HHHHHcCCCC----------CCCCCccEEEeecCCcc
Q 003866 353 LNGLLSRGNQ----------KEGISIPIGIIPAGSDN 379 (790)
Q Consensus 353 lNGL~~r~d~----------~~~~~iPLGIIPaGTGN 379 (790)
+.-++..+.. .....+|+..||.-.|+
T Consensus 97 va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 97 VALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp HHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred HHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 4444443210 01123799999984433
No 93
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=67.44 E-value=33 Score=38.60 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++|+..+..-+ ...+ +++...|+.+|+++.++. ...+ ....+.++.+.. ...|.||.+|| |++..+.-
T Consensus 25 ~~~liv~~~~~~~---~~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GSviD~aK 98 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLV-ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRA-GGCDGVIAFGG-GSALDLAK 98 (370)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6888887765422 1234 467889999998886652 1122 123444444432 34799999999 66666654
Q ss_pred HH
Q 003866 355 GL 356 (790)
Q Consensus 355 GL 356 (790)
.+
T Consensus 99 ~i 100 (370)
T cd08192 99 AV 100 (370)
T ss_pred HH
Confidence 43
No 94
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=65.35 E-value=1.2e+02 Score=36.53 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=83.2
Q ss_pred EEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHHHhhhhcccceecccCCCcccccccccccCCCCCCCcccc
Q 003866 193 FTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPELI 272 (790)
Q Consensus 193 ~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~~~ 272 (790)
..+|+|..... +..|+--...+...+.+++.+-...+.+ .+... .+..+
T Consensus 359 ~~v~~ygk~~~--------r~~rkmGhV~~~g~~~~e~~~~~~~~~~---~~~~~------------~~~~~-------- 407 (577)
T PLN02948 359 ASVHWYGKPEM--------RKQRKMGHITVVGPSAAEVEARLDQLLA---EESAD------------PDALP-------- 407 (577)
T ss_pred CEEEEecCCCC--------CCCCeeEEEEEecCCHHHHHHHHHHHHh---hhccC------------CCCCC--------
Confidence 46777753221 2345666777788888887765554421 01111 01111
Q ss_pred ccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe---CCchhHHHHHHHhhhcCCCCc-eEEEeCchH
Q 003866 273 FRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT---TSAGHAKNLASTVDISSCPDG-IICVGGDGI 348 (790)
Q Consensus 273 ~~~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T---e~~~hA~ela~~~~~~~~~D~-IVvvGGDGT 348 (790)
....++.||. |......+. +.+...|+..|++|++.+. ..+.+..++++++... +.++ |+++|+.+-
T Consensus 408 ---~~~~~v~i~~----gs~sd~~~~-~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~-~~~v~i~~ag~~~~ 478 (577)
T PLN02948 408 ---KGTPLVGIIM----GSDSDLPTM-KDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSR-GLQVIIAGAGGAAH 478 (577)
T ss_pred ---CCCCeEEEEE----CchhhHHHH-HHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHC-CCCEEEEEcCcccc
Confidence 1334576776 444444555 4677799999999988765 3456667777777543 3454 566799999
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEeecCCc
Q 003866 349 INEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 349 lnEVlNGL~~r~d~~~~~~iPLGIIPaGTG 378 (790)
|--|+.++-. +|+-=+|..++
T Consensus 479 l~~~~a~~t~---------~pvi~vp~~~~ 499 (577)
T PLN02948 479 LPGMVASMTP---------LPVIGVPVKTS 499 (577)
T ss_pred chHHHhhccC---------CCEEEcCCCCC
Confidence 9999998853 56655666544
No 95
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=62.60 E-value=24 Score=32.66 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=41.1
Q ss_pred eeeecceeeeccc-------ccCCcceEEEEecCCc----c-eEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHH
Q 003866 162 AKLTSKALVWGSH-------VLPLDDIVSVSYNNGL----R-HFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEE 229 (790)
Q Consensus 162 ~~~~~~~~~~~~~-------~l~l~dv~~~~~~~~~----~-~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~ 229 (790)
-.||+..|.|.+. .|+|+++.+|..-... . -|+|- +| .++|-+.|+|.+|
T Consensus 26 F~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqiv-t~-----------------~r~~yi~a~s~~E 87 (98)
T cd01244 26 FQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIV-CE-----------------DDTMQLQFEAPVE 87 (98)
T ss_pred EEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEE-eC-----------------CCeEEEECCCHHH
Confidence 4577777877644 6788999998743321 1 24442 12 1379999999999
Q ss_pred HHHHHhhhh
Q 003866 230 AIQWVGGFA 238 (790)
Q Consensus 230 a~~W~~~~~ 238 (790)
.++|..+|.
T Consensus 88 ~~~Wi~al~ 96 (98)
T cd01244 88 ATDWLNALE 96 (98)
T ss_pred HHHHHHHHh
Confidence 999999984
No 96
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=60.78 E-value=52 Score=33.35 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHH-HHHHHHHHc
Q 003866 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGII-NEVLNGLLS 358 (790)
Q Consensus 281 llVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTl-nEVlNGL~~ 358 (790)
+.||+ |.....-...++ +.++..+++.|+++.+..+.. +....++++++... .+|+||+++.+... .+.+..|..
T Consensus 2 ig~i~-p~~~~~~~~~~~-~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgvi~~~~~~~~~~~~~~~l~~ 78 (267)
T cd01536 2 IGLVV-PSLNNPFWQAMN-KGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQ-GVDGIIISPVDSAALTPALKKANA 78 (267)
T ss_pred EEEEe-ccccCHHHHHHH-HHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCchhHHHHHHHHHH
Confidence 44544 543222223334 567778888899888877763 34445666665443 57999998877543 346666654
Q ss_pred CCCCCCCCCccEEEeec
Q 003866 359 RGNQKEGISIPIGIIPA 375 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPa 375 (790)
. ++|+-.+-.
T Consensus 79 ~-------~ip~V~~~~ 88 (267)
T cd01536 79 A-------GIPVVTVDS 88 (267)
T ss_pred C-------CCcEEEecC
Confidence 3 366655533
No 97
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=58.81 E-value=60 Score=37.10 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHH--
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEV-- 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV-- 352 (790)
++++|+.-+.-- ....+ +.+...|+++|+++.++. +..+ ....+.++.+.. .++|.||.+||=-.+--.
T Consensus 50 ~~~lvv~~~~~~---~~g~~-~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~-~~~D~IiavGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLH---QAGMT-AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRE-SGCDGVIAFGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCcCEEEEeCChHHHHHHHH
Confidence 667766543321 11234 468889999999887662 2222 233444444432 357999999995554432
Q ss_pred HHHHHcCCC--C-------CCCCCccEEEeec--CCcchhhh
Q 003866 353 LNGLLSRGN--Q-------KEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 353 lNGL~~r~d--~-------~~~~~iPLGIIPa--GTGNdfAr 383 (790)
+..++..++ + .....+|+..||. |||--..+
T Consensus 125 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~ 166 (395)
T PRK15454 125 VALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTN 166 (395)
T ss_pred HHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCC
Confidence 222222211 0 0112479999997 66654443
No 98
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=58.49 E-value=48 Score=39.57 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch------hHHHHHHHhhhc--CCCCceEEEeCchHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG------HAKNLASTVDIS--SCPDGIICVGGDGII 349 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~------hA~ela~~~~~~--~~~D~IVvvGGDGTl 349 (790)
..++++|+..... . +.+.+...|+.+|+.+.......+. .+.++.+.+... ...|.||++|| |++
T Consensus 209 g~k~~iV~d~~v~-----~-~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv 281 (542)
T PRK14021 209 PVKVALIHTQPVQ-----R-HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAA 281 (542)
T ss_pred CCeEEEEECccHH-----H-HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHH
Confidence 3577777765431 2 3357888899888865444333432 233333333222 13689999988 888
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..++-.+...- ...+|+..||.
T Consensus 282 ~D~AKfvA~~y----~rGi~~i~vPT 303 (542)
T PRK14021 282 TDLAGFVAATW----MRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHHH----HcCCCEEEeCC
Confidence 88877765310 01588999986
No 99
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=57.63 E-value=32 Score=39.74 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhh----h-----cC--CCCceEEEeCchH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD----I-----SS--CPDGIICVGGDGI 348 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~----~-----~~--~~D~IVvvGGDGT 348 (790)
.-++|+|..--.|+. +..+|...... ++.|-...+.+.+...+. . .. .+-.|+++|||--
T Consensus 17 e~i~Lvn~sd~qgq~-------l~~~l~~~~~p--vv~t~s~advqa~fs~iv~rIQk~Cn~ns~~p~~vKV~v~G~~~y 87 (414)
T PF10254_consen 17 ENIILVNTSDWQGQF-------LSDLLQEHMLP--VVCTCSTADVQAAFSAIVSRIQKFCNCNSSPPPPVKVAVAGGQSY 87 (414)
T ss_pred ceEEEEecCccchhH-------HHHHHhhcCCC--eEecCCHHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEccHHH
Confidence 367888977654442 44566666443 556666666665443321 1 01 1234899999999
Q ss_pred HHHHHHHHHcC-----CCCCCCCCccEEEeecCCcchhhhhhcCC
Q 003866 349 INEVLNGLLSR-----GNQKEGISIPIGIIPAGSDNSLVWTVLGV 388 (790)
Q Consensus 349 lnEVlNGL~~r-----~d~~~~~~iPLGIIPaGTGNdfArsllG~ 388 (790)
++.|+...++. .+|. .-+.+-|||.|+ |.+|+. +|-
T Consensus 88 ~~~VLr~yVE~Ls~K~~dWl--~~~rFlvIPlGs-~~vary-Lgs 128 (414)
T PF10254_consen 88 LSAVLRAYVEQLSHKPPDWL--NYLRFLVIPLGS-HPVARY-LGS 128 (414)
T ss_pred HHHHHHHHHHHhccCCcccc--cceeEEEecCCC-CHHHHH-Hhc
Confidence 99999886542 3442 236689999999 999996 443
No 100
>PRK06703 flavodoxin; Provisional
Probab=56.72 E-value=60 Score=31.47 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe---CchHHHH----
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINE---- 351 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GDGTlnE---- 351 (790)
++++||+ .|..|...++. +.|...|...|++++++....... .++. .+|.||++. |+|-+..
T Consensus 2 mkv~IiY--~S~tGnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~-----~~l~---~~d~viigspt~~~g~~p~~~~~ 70 (151)
T PRK06703 2 AKILIAY--ASMSGNTEDIA-DLIKVSLDAFDHEVVLQEMDGMDA-----EELL---AYDGIILGSYTWGDGDLPYEAED 70 (151)
T ss_pred CeEEEEE--ECCCchHHHHH-HHHHHHHHhcCCceEEEehhhCCH-----HHHh---cCCcEEEEECCCCCCcCcHHHHH
Confidence 4688888 44556666666 467778888898888765433221 1222 367777754 6775543
Q ss_pred HHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 352 VLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 352 VlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
++..|.... ....+++++-.|.
T Consensus 71 f~~~l~~~~----l~~k~~~vfg~g~ 92 (151)
T PRK06703 71 FHEDLENID----LSGKKVAVFGSGD 92 (151)
T ss_pred HHHHHhcCC----CCCCEEEEEccCC
Confidence 444443221 2245677775443
No 101
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=55.45 E-value=1.1e+02 Score=31.67 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+.++..+++.|+++.++.+... ....+.+.+. ...+|+||+++.+..- ..++.+... .+|+-++-
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~-~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~ 94 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSP-DRDWLARYLA-SGRADGVILIGQHDQD-PLPERLAET-------GLPFVVWG 94 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHH-hCCCCEEEEeCCCCCh-HHHHHHHhC-------CCCEEEEC
Confidence 4577788889988877766543 3334433332 2358999998876542 445655443 46776664
No 102
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=55.01 E-value=63 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhH--HHHHHHcCCeEEEEEeC
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIV--EPIFKLAGFKLEVVKTT 319 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I--~plL~~agi~~~v~~Te 319 (790)
+|++||+-..+-- .+.... +.+ ...|+++|+++++.-.+
T Consensus 2 kkVlills~~~~~-dG~e~~-E~~~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 2 KKIAVILSGCGVY-DGSEIH-EAVLTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred CEEEEEEccCCCC-CCEehh-HHHHHHHHHHHCCCEEEEEeCC
Confidence 5788888533221 111112 223 34688899998887543
No 103
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=54.93 E-value=16 Score=35.95 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=40.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHH----------HHHHHHHHcCCCCCCCCCcc
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGII----------NEVLNGLLSRGNQKEGISIP 369 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTl----------nEVlNGL~~r~d~~~~~~iP 369 (790)
++++..|+..|++++.+......++ ++.+.+. ..|+|++.|||=.. .+++..++.. ..+
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~---~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~-------G~v 71 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIR---EADAIFLGGGDTFRLLRQLKETGLDEAIREAYRK-------GGV 71 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHH---HSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHT-------TSE
T ss_pred HHHHHHHHHCCCEEEEEeccCCChH-HHHHHHH---hCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHC-------CCE
Confidence 5677899999999777666555444 5555554 26999999999542 3334443332 356
Q ss_pred EEEeecCCcc
Q 003866 370 IGIIPAGSDN 379 (790)
Q Consensus 370 LGIIPaGTGN 379 (790)
++=.-+|+..
T Consensus 72 i~G~SAGA~i 81 (154)
T PF03575_consen 72 IIGTSAGAMI 81 (154)
T ss_dssp EEEETHHHHC
T ss_pred EEEEChHHhh
Confidence 6666666655
No 104
>PRK15138 aldehyde reductase; Provisional
Probab=54.68 E-value=61 Score=36.91 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||.-+.+-... ..+ +++...|. ++++.++. ..++ ....+.++.+.. .+.|.||++|| |.+-.+.-
T Consensus 30 ~~~livt~~~~~~~~--g~~-~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~AK 102 (387)
T PRK15138 30 ARVLITYGGGSVKKT--GVL-DQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVRE-EKITFLLAVGG-GSVLDGTK 102 (387)
T ss_pred CeEEEECCCchHHhc--CcH-HHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-hHHHHHHH
Confidence 678888655442221 233 35666674 66665552 1122 233444444332 35799999999 34443333
Q ss_pred HH---HcCCC------------CCCCCCccEEEeec--CCcchhh
Q 003866 355 GL---LSRGN------------QKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL---~~r~d------------~~~~~~iPLGIIPa--GTGNdfA 382 (790)
.+ +..+. ......+|+..||. |||--..
T Consensus 103 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t 147 (387)
T PRK15138 103 FIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESN 147 (387)
T ss_pred HHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccC
Confidence 32 11110 01112479999997 7775444
No 105
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.59 E-value=75 Score=32.79 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCceEEEeCchHH-HHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDGIICVGGDGII-NEVLNG 355 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~IVvvGGDGTl-nEVlNG 355 (790)
|+.||+ |.....--..++ ..++..+++.|+.+.+..+. .+....++.+.+.. ..+|+||+++.|-.. .+++..
T Consensus 1 ~Igvi~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgvii~~~~~~~~~~~l~~ 77 (273)
T cd06310 1 KIALVP-KGTTSDFWQAVK-AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIA-RGPDAILLAPTDAKALVPPLKE 77 (273)
T ss_pred CeEEEe-cCCCcHHHHHHH-HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHH-hCCCEEEEcCCChhhhHHHHHH
Confidence 455666 332221122333 46677888899888776542 33334455555543 358999998877543 456666
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
+... .+|+-++
T Consensus 78 ~~~~-------~ipvV~~ 88 (273)
T cd06310 78 AKDA-------GIPVVLI 88 (273)
T ss_pred HHHC-------CCCEEEe
Confidence 6543 3666655
No 106
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=53.55 E-value=31 Score=38.32 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE---eCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK---TTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~---Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.. ... +.+++...|+..++ .++. .+... ...++++.+.. ...|.||++|| |++..+.-
T Consensus 24 ~~~livt~~~~----~~~-~~~~v~~~l~~~~~--~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-Gs~iD~aK 94 (337)
T cd08177 24 SRALVLTTPSL----ATK-LAERVASALGDRVA--GTFDGAVMHTPVEVTEAAVAAARE-AGADGIVAIGG-GSTIDLAK 94 (337)
T ss_pred CeEEEEcChHH----HHH-HHHHHHHHhccCCc--EEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHH
Confidence 67888865432 222 33567778876643 2221 11111 22333343322 34799999998 88888887
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.+.... .+|+..||.
T Consensus 95 ~ia~~~------~~p~i~IPT 109 (337)
T cd08177 95 AIALRT------GLPIIAIPT 109 (337)
T ss_pred HHHHHh------cCCEEEEcC
Confidence 765431 589999995
No 107
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.50 E-value=94 Score=33.39 Aligned_cols=99 Identities=11% Similarity=0.202 Sum_probs=64.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc-CCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS-SCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~-~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+++..++|+++|.|+.-... .+...|.++|-.+.++.++...+.....+..... .+.+.+.|.++| .+.. +...+
T Consensus 1 M~vItf~s~KGGaGKTT~~~--~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~~-l~~~~ 76 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAM--ALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELTI-LEDAY 76 (231)
T ss_pred CCeEEEecCCCCCcHHHHHH--HHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chhh-HHHHH
Confidence 46889999999999976544 5777888899999999999999988887665332 233445554443 3322 22222
Q ss_pred cCCCCCCCCCccEEEeec-CCcchhhhh
Q 003866 358 SRGNQKEGISIPIGIIPA-GSDNSLVWT 384 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPa-GTGNdfArs 384 (790)
+... .....+.+|=. |++|-++..
T Consensus 77 e~a~---~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 77 EAAE---ASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHHH---hcCCCEEEEeCCCCCchhHHH
Confidence 2110 11245667766 888887754
No 108
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.49 E-value=88 Score=32.45 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=43.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCC--chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS--AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~--~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+.++..+++.|+.+.++.++. .....++.+.+.. ...|+||+++.+.+ +.+.+..+... .+|+-.+
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIA-AKPDGIVVTIPDPDALDPAIKRAVAA-------GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChHHhHHHHHHHHHC-------CCeEEEe
Confidence 467778888999888877764 3334455555543 35899999998765 45666666543 3666555
No 109
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=52.04 E-value=90 Score=32.12 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCch-HHHHHHHHHHcC
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDG-IINEVLNGLLSR 359 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDG-TlnEVlNGL~~r 359 (790)
..++..+++.|+.+.++.+.... ...+..+.+.. ..+|+||++.+|. +..+++..+...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~vdgii~~~~~~~~~~~~i~~~~~~ 79 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIA-QKVDAIIIQHGRAEVLKPWVKRALDA 79 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhhHHHHHHHHHc
Confidence 46777888999888776554322 22344444433 3589999998875 456777777554
No 110
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=50.68 E-value=1.1e+02 Score=30.20 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=38.5
Q ss_pred HhHHHHHHH--cCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 300 DIVEPIFKL--AGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 300 ~~I~plL~~--agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
+.++..+++ .++++.++.+.... ...++++++... .+|+||..+.+.+...++..+...
T Consensus 20 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~~~~~~~~ 81 (269)
T cd01391 20 AGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQ-GVDGIIGPPSSSSALAVVELAAAA 81 (269)
T ss_pred HHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEecCCCHHHHHHHHHHHHc
Confidence 456667777 67777666555543 455666666543 579999999888776656655443
No 111
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=50.40 E-value=88 Score=35.86 Aligned_cols=91 Identities=16% Similarity=0.324 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE----------eCCc-hhHHHHHHHhhhcC--CCCceEEEe
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK----------TTSA-GHAKNLASTVDISS--CPDGIICVG 344 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~----------Te~~-~hA~ela~~~~~~~--~~D~IVvvG 344 (790)
.+|++||..+.--+-. ..+. +.+...|+.+++++.++. .+.. ....++.+.+...+ ..|.||++|
T Consensus 42 ~~r~liVtD~~v~~~~-~~l~-~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAH-PDLL-EQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhh-hhHH-HHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 4789999987654311 1223 578888988887654321 1222 22444444443221 135899998
Q ss_pred CchHHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 345 GDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 345 GDGTlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
| |++-.+.-.+..... ..+|+..||.
T Consensus 120 G-Gsv~D~ak~iA~~~~----rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATAH----RGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHhc----CCCCEEEEcC
Confidence 8 777777655532210 1479999996
No 112
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.53 E-value=33 Score=32.35 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=48.6
Q ss_pred ccceeeeeecceeeeccc--------ccCCcceEEEE----ecCCcceEEEEEeecCCCCCccccccCCeeeeeEEEeec
Q 003866 157 QDAVNAKLTSKALVWGSH--------VLPLDDIVSVS----YNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLA 224 (790)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~--------~l~l~dv~~~~----~~~~~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~ 224 (790)
+...=--||+..|.|.+. +|+|+++--=. +.++-..|.+| +|-.++- =+-.+++...|
T Consensus 19 sK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLf-npd~rnv---------ykd~k~lel~~ 88 (110)
T cd01256 19 SKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALF-YPDGRNV---------YKDYKQLELGC 88 (110)
T ss_pred CcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEE-cCccccc---------ccchheeeecC
Confidence 445556799999999954 89998884322 23334446665 4544432 12456788899
Q ss_pred CCHHHHHHHHhhh
Q 003866 225 STTEEAIQWVGGF 237 (790)
Q Consensus 225 ~~~~~a~~W~~~~ 237 (790)
.++++..-|...|
T Consensus 89 ~~~e~vdswkasf 101 (110)
T cd01256 89 ETLEEVDSWKASF 101 (110)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999887
No 113
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=49.31 E-value=88 Score=35.72 Aligned_cols=91 Identities=14% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE----E------eCCc-hhHHHHHHHhhhcC--CCCceEEEe
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV----K------TTSA-GHAKNLASTVDISS--CPDGIICVG 344 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~----~------Te~~-~hA~ela~~~~~~~--~~D~IVvvG 344 (790)
.+|++||.++.-.+ ...... +.+...|+.+|+++.++ . ++.. ....++++.+...+ ..|.||++|
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~-~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalG 107 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLA-SDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIG 107 (369)
T ss_pred CCeEEEEECcchHH-hhhhHH-HHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEEC
Confidence 47899999976654 111222 56778888888655432 1 1111 22334444433211 125899998
Q ss_pred CchHHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 345 GDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 345 GDGTlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
| |.+..++-.+...-. ..+|+-.||.
T Consensus 108 G-G~v~D~ag~vA~~~~----rGip~I~IPT 133 (369)
T cd08198 108 G-GAVLDAVGYAAATAH----RGVRLIRIPT 133 (369)
T ss_pred C-hHHHHHHHHHHHHhc----CCCCEEEECC
Confidence 8 888888876653211 1589999996
No 114
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=48.82 E-value=42 Score=31.45 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++++.|.++|.
T Consensus 78 rt~~l~A~se~e~e~WI~~i~ 98 (101)
T cd01264 78 KTYILKAKDEKNAEEWLQCLN 98 (101)
T ss_pred ceEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999999983
No 115
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=47.85 E-value=44 Score=37.73 Aligned_cols=95 Identities=17% Similarity=0.279 Sum_probs=56.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC-Cc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT-SA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te-~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||..+.+. .+ +.+...|+.+|+++.++... .+ ....+.++.+.. ..+|.||++|| |++..+.-.
T Consensus 23 ~r~livtd~~~~------~~-~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSL------RA-AWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARN-AGCDVVIAIGG-GSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchH------HH-HHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHh-cCCCEEEEecC-chHHHHHHH
Confidence 789999877653 34 46778899999988776322 11 122334433322 35799999999 555555544
Q ss_pred H---HcCCC-------------CCCCCCccEEEeec--CCcchhh
Q 003866 356 L---LSRGN-------------QKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 356 L---~~r~d-------------~~~~~~iPLGIIPa--GTGNdfA 382 (790)
+ +..+. ......+|+..||. |||--..
T Consensus 94 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t 138 (374)
T cd08183 94 IAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVT 138 (374)
T ss_pred HHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhC
Confidence 3 21110 00113579999996 5654443
No 116
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=47.74 E-value=1.9e+02 Score=30.79 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=58.3
Q ss_pred CCCCCeEEEEEcCCCC----CCC-chhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc---CCCCce-EEE--
Q 003866 275 CKSPPKMLVILNPRSG----RGR-SSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS---SCPDGI-ICV-- 343 (790)
Q Consensus 275 ~~rpkrllVIINP~SG----kG~-a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~---~~~D~I-Vvv-- 343 (790)
.+.|+++.+|||-..= ... +..-. +.++.+|+..|+++++..=-...+..+.++++... ..+|.+ |++
T Consensus 4 ~~~p~g~alII~n~~f~~~~~r~g~~~D~-~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~s 82 (241)
T smart00115 4 NSKPRGLALIINNENFHSLPRRNGTDVDA-ENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLS 82 (241)
T ss_pred CCCCCcEEEEEECccCCCCcCCCCcHHHH-HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcC
Confidence 3567888888876531 111 11223 57888999999988776555555566666555431 135643 322
Q ss_pred --------eCch---HHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhh
Q 003866 344 --------GGDG---IINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLV 382 (790)
Q Consensus 344 --------GGDG---TlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfA 382 (790)
|-|| -|.++++-+....-..-..++.|-||-+=-||.+-
T Consensus 83 HG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~ 132 (241)
T smart00115 83 HGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDELD 132 (241)
T ss_pred CCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCCCC
Confidence 4455 44555555432110111224567777776666554
No 117
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=47.52 E-value=44 Score=37.80 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++|+..+..-+. ..+ +.+...|++.++++.++. ...+ ....+.++.+.. .++|.||++|| |.+-.+.-
T Consensus 30 ~r~lvvt~~~~~~~---g~~-~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 30 KKALVVTDKDLIKF---GVA-DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKA-SGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred CEEEEEcCcchhhc---cch-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHH
Confidence 68899887654221 123 567789999999887662 1122 233444444432 34799999999 55555553
Q ss_pred HH---HcCCC-----------CCCCCCccEEEeec--CCcchhh
Q 003866 355 GL---LSRGN-----------QKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 355 GL---~~r~d-----------~~~~~~iPLGIIPa--GTGNdfA 382 (790)
++ ...+. ......+|+..||. |||--..
T Consensus 104 aia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t 147 (379)
T TIGR02638 104 AIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVT 147 (379)
T ss_pred HHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhC
Confidence 32 22110 00113479999997 5554333
No 118
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=46.98 E-value=1.4e+02 Score=30.48 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=42.7
Q ss_pred hhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 296 KVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 296 kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
.++ ..++..++..|+.+.+..+++. ....++++.+.. ..+|+||+..++....+++..+... .+|+-++
T Consensus 16 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvV~~ 85 (266)
T cd06282 16 ECV-QGIQEEARAAGYSLLLATTDYDAEREADAVETLLR-QRVDGLILTVADAATSPALDLLDAE-------RVPYVLA 85 (266)
T ss_pred HHH-HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCchHHHHHHhhC-------CCCEEEE
Confidence 344 4677788888988887766542 222344555533 3589999988876434566666443 4665444
No 119
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=45.91 E-value=1.3e+02 Score=30.67 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=40.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+++.+..+.......+.+.++.....+|+||+.+.+... ..+..+... .+|+-.+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALLLER-------GFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHHHhc-------CCCEEEE
Confidence 46778889999888777766543333444443223357999998876432 334444332 4676665
No 120
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=45.85 E-value=1.2e+02 Score=34.17 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHH-cCCeEEEEEe----CCchhHHHHHHHhhhc--CCCCceEEEeCchHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKL-AGFKLEVVKT----TSAGHAKNLASTVDIS--SCPDGIICVGGDGIIN 350 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~-agi~~~v~~T----e~~~hA~ela~~~~~~--~~~D~IVvvGGDGTln 350 (790)
.++++||..+.-.+ .+.+.+...|+. .++++.++.. .....+.++++.+... ...|.||++|| |++.
T Consensus 23 ~~k~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 36888988765432 244677788877 6766655431 1222344444444321 22588999987 7777
Q ss_pred HHHHHHHcCCCCCCCCCccEEEeec--CCcch
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIPA--GSDNS 380 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIPa--GTGNd 380 (790)
.+.-.+...- ...+|+-.||. ++++|
T Consensus 97 D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 97 DVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 7766554210 01589999997 55555
No 121
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.66 E-value=59 Score=36.75 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+-+.. ..+ +++...|+.+++++.++. ...+ ....+.++.+.. ..+|.||.+|| |.+-.+.-
T Consensus 26 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IiavGG-GS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYL-DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVVGLGG-GSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhc--cHH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-ccHHHHHH
Confidence 789999987763222 234 567889999999886652 1111 233444444432 34799999999 55555554
Q ss_pred HH---HcCCC--------------CCCCCCccEEEeec--CCcchhhh
Q 003866 355 GL---LSRGN--------------QKEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 355 GL---~~r~d--------------~~~~~~iPLGIIPa--GTGNdfAr 383 (790)
.+ +..+. ......+|+..||. |||--..+
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~ 148 (380)
T cd08185 101 AIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADP 148 (380)
T ss_pred HHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCC
Confidence 43 21110 00112589999996 66654443
No 122
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=44.84 E-value=1.4e+02 Score=33.43 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eC--CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TT--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te--~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++++||..+.+-+ . ..+ +.+...|+..++++.++. .. ......++++.+.. .++|.||++|| |++..+.-
T Consensus 24 ~~~lvv~~~~~~~-~--~~~-~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IiaiGG-Gs~~D~AK 97 (370)
T cd08551 24 RKALIVTDPGLVK-T--GVL-DKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYRE-EGCDGVIAVGG-GSVLDTAK 97 (370)
T ss_pred CeEEEEeCcchhh-C--ccH-HHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6889998877654 1 223 467788988888876552 11 22334555555533 34799999999 55555554
Q ss_pred HH---HcCCC---------CCCCCCccEEEeec--CCc
Q 003866 355 GL---LSRGN---------QKEGISIPIGIIPA--GSD 378 (790)
Q Consensus 355 GL---~~r~d---------~~~~~~iPLGIIPa--GTG 378 (790)
.+ +..+. ......+|+..||. |||
T Consensus 98 ~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 98 AIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 43 21110 00112589999998 454
No 123
>PRK09271 flavodoxin; Provisional
Probab=44.73 E-value=35 Score=33.74 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=48.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe---CchHHHH----
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINE---- 351 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GDGTlnE---- 351 (790)
++++|++=...| ...++. +.|...|...|+++++....... ..++..++ . .+|.||+.. |+|.+.+
T Consensus 1 mkv~IvY~S~tG--nTe~~A-~~ia~~l~~~g~~v~~~~~~~~~-~~~~~~~~--~-~~d~vilgt~T~~~G~~p~~~~~ 73 (160)
T PRK09271 1 MRILLAYASLSG--NTREVA-REIEERCEEAGHEVDWVETDVQT-LAEYPLDP--E-DYDLYLLGTWTDNAGRTPPEMKR 73 (160)
T ss_pred CeEEEEEEcCCc--hHHHHH-HHHHHHHHhCCCeeEEEeccccc-ccccccCc--c-cCCEEEEECcccCCCcCCHHHHH
Confidence 468888866555 555555 47778899999888766543321 11121122 1 367777776 6776554
Q ss_pred HHHHHHcCCCCCCCCCccEEEeecC
Q 003866 352 VLNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 352 VlNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
+++.|.... .....++++-.|
T Consensus 74 f~~~l~~~~----~~~k~~avfgsg 94 (160)
T PRK09271 74 FIAELAETI----GKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHh----ccCCeEEEEecC
Confidence 444443321 012457777544
No 124
>PRK04155 chaperone protein HchA; Provisional
Probab=43.65 E-value=1.7e+02 Score=32.35 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCC------CC--CCchhhHHHhHH--HHHHHcCCeEEEEEeC
Q 003866 277 SPPKMLVILNPRS------GR--GRSSKVFHDIVE--PIFKLAGFKLEVVKTT 319 (790)
Q Consensus 277 rpkrllVIINP~S------Gk--G~a~kv~~~~I~--plL~~agi~~~v~~Te 319 (790)
..||+|||+.-.. |+ ..+-... +.+. ..|+++|+++++...+
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~-E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPV-ETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHH-HHHHHHHHHHHCCCEEEEEecC
Confidence 4458888887432 22 1222111 2333 4688899999887653
No 125
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.62 E-value=1.4e+02 Score=31.03 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=40.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCch-HHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDG-IINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDG-TlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+++.+..+... ....++.+.+.. ...|+||+.+.|- .+.+.+..+... .+|+-++
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~-~~~Dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLT-RGVNVLIINPVDPEGLVPAVAAAKAA-------GVPVVVV 86 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEecCCccchHHHHHHHHHC-------CCCEEEe
Confidence 4677888888987766554322 222344455533 3589999988763 334566666543 4676665
No 126
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=42.98 E-value=1.3e+02 Score=31.63 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=44.5
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+.+.|+. +.+.+..+... .+|+-.+=.
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~l~~l~~~-------~ipvV~~~~ 88 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIA-KGVDVLVIAPVDGEALASAVEKAADA-------GIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhHHHHHHHHHHC-------CCCEEEECC
Confidence 4677788888988877766532 333455555543 45899999988876 46677666543 466666533
No 127
>PRK06490 glutamine amidotransferase; Provisional
Probab=42.66 E-value=29 Score=36.95 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=42.2
Q ss_pred cCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHH
Q 003866 274 RCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIIN 350 (790)
Q Consensus 274 ~~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTln 350 (790)
.|+..++++||.|-.++.-. .+..+|+..|++++++.....+. +-..++ .+|+||+.||=++++
T Consensus 3 ~~~~~~~vlvi~h~~~~~~g-------~l~~~l~~~g~~~~v~~~~~~~~---~p~~l~---~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 3 QARDKRPVLIVLHQERSTPG-------RVGQLLQERGYPLDIRRPRLGDP---LPDTLE---DHAGAVIFGGPMSAN 66 (239)
T ss_pred ccCCCceEEEEecCCCCCCh-------HHHHHHHHCCCceEEEeccCCCC---CCCccc---ccCEEEEECCCCCCC
Confidence 35678999999987765321 34567888899888775432211 111222 379999999988754
No 128
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=42.51 E-value=97 Score=29.64 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=38.7
Q ss_pred hHHHHHHHcCCeEEEEEeC------Cch---hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCC
Q 003866 301 IVEPIFKLAGFKLEVVKTT------SAG---HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (790)
Q Consensus 301 ~I~plL~~agi~~~v~~Te------~~~---hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~ 360 (790)
.....|+..|+++...... ..- -+.++.+.+.. ..+|.||++.|||=+..+++.|....
T Consensus 56 ~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~-~~~d~ivLvSgD~Df~~~i~~lr~~G 123 (149)
T cd06167 56 GFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYK-RRIDTIVLVSGDSDFVPLVERLRELG 123 (149)
T ss_pred HHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhh-cCCCEEEEEECCccHHHHHHHHHHcC
Confidence 3445788889876544421 111 12333333332 25799999999999999999998763
No 129
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=40.88 E-value=2e+02 Score=30.86 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=49.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+.+.||+.-.+. .--..++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+-...+.+..
T Consensus 60 ~~~~Igvv~~~~~~-~~~~~l~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~ 136 (328)
T PRK11303 60 RTRSIGLIIPDLEN-TSYARIA-KYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQ-RQVDALIVSTSLPPEHPFYQR 136 (328)
T ss_pred CCceEEEEeCCCCC-chHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCChHHHHH
Confidence 44567777632222 1122333 4567778888988877665432 223344555433 358999998875433455555
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|... .+|+-+|
T Consensus 137 l~~~-------~iPvV~v 147 (328)
T PRK11303 137 LQND-------GLPIIAL 147 (328)
T ss_pred HHhc-------CCCEEEE
Confidence 5433 4676665
No 130
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.74 E-value=2e+02 Score=29.64 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=44.5
Q ss_pred hhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 296 KVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 296 kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
.++ ..++..+++.|+.+.+..+....+ ..++.+.+.. ..+|+||+.+++....+++..+... .+|+-++-
T Consensus 16 ~~~-~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgii~~~~~~~~~~~~~~~~~~-------~ipvV~i~ 86 (269)
T cd06281 16 QLF-SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQ-RRMDGIIIAPGDERDPELVDALASL-------DLPIVLLD 86 (269)
T ss_pred HHH-HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCcHHHHHHHHhC-------CCCEEEEe
Confidence 444 467788899998887766654332 3344555533 3589999998764334455555443 46776664
Q ss_pred cCC
Q 003866 375 AGS 377 (790)
Q Consensus 375 aGT 377 (790)
...
T Consensus 87 ~~~ 89 (269)
T cd06281 87 RDM 89 (269)
T ss_pred ccc
Confidence 433
No 131
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=40.35 E-value=83 Score=33.67 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI 348 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGT 348 (790)
.++++|| |.++.......|-+..+..|+..|+++..+.+ .+ +..+.+. ..|+|++.||+-+
T Consensus 31 ~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~--~~---d~~~~l~---~ad~I~v~GGnt~ 91 (233)
T PRK05282 31 RRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHR--VA---DPVAAIE---NAEAIFVGGGNTF 91 (233)
T ss_pred CCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEecc--ch---hhHHHHh---cCCEEEECCccHH
Confidence 4555554 55554333334446788899999988665543 22 2333332 3589999999854
No 132
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.17 E-value=1.2e+02 Score=28.79 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.8
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.+.|.|.++|.+++++|+++|.
T Consensus 89 ~~~~~~~A~s~~e~~~Wi~al~ 110 (125)
T cd01252 89 HSVYRISAANDEEMDEWIKSIK 110 (125)
T ss_pred ceEEEEECCCHHHHHHHHHHHH
Confidence 4688899999999999999994
No 133
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=40.11 E-value=2e+02 Score=28.75 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 299 HDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 299 ~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
..-++..++..|+++.++.+... ....+.++++.. ..+|+||+.+.+.....++..+... ++|+-.+....
T Consensus 18 ~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~~~~~~~~~~~l~~~-------~ip~v~~~~~~ 89 (264)
T cd01537 18 LKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIA-RGVDGIIIAPSDLTAPTIVKLARKA-------GIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCcchhHHHHhhhc-------CCCEEEeccCC
Confidence 35677788889998877766543 234556666543 3589999998886655445555443 57887776665
Q ss_pred c
Q 003866 378 D 378 (790)
Q Consensus 378 G 378 (790)
.
T Consensus 90 ~ 90 (264)
T cd01537 90 P 90 (264)
T ss_pred C
Confidence 4
No 134
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.01 E-value=2.2e+02 Score=28.99 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=43.5
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecC
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
+.++..+++.|+.+.++.++......++.+.+.. ...|+||+.+.|-+- .++..+... .+|+-.+-..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~~ 86 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQ-YRVDGVIVTSGTLSS-ELAEECRRN-------GIPVVLINRY 86 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHH-cCCCEEEEecCCCCH-HHHHHHhhc-------CCCEEEECCc
Confidence 4577788889988877766654444455555543 458999999887553 345555443 4676666433
No 135
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=39.89 E-value=65 Score=35.08 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------chhHH----HHHHHhhhcCCCCceEEE-eCchHHH
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AGHAK----NLASTVDISSCPDGIICV-GGDGIIN 350 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~------~~hA~----ela~~~~~~~~~D~IVvv-GGDGTln 350 (790)
-|+.|.++-... ..+ +.....|+..|+++.+-.+-. ++..+ ++.+.+. ....++|+++ ||+|+..
T Consensus 2 ~iiapSs~~~~~-~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~-d~~i~aI~~~rGG~ga~r 77 (282)
T cd07025 2 GIVAPSSPIDEE-ERL-ERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFA-DPEIKAIWCARGGYGANR 77 (282)
T ss_pred EEEeCCCCCCcH-HHH-HHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhh-CCCCCEEEEcCCcCCHHH
Confidence 378888876553 455 456678999998776544322 23333 3333332 2346776554 9999753
No 136
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=39.70 E-value=2.4e+02 Score=30.44 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=50.2
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+...+ ..-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+....+.+.
T Consensus 62 ~~~~~Igvv~~~~~-~~~~~~i~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~ 138 (342)
T PRK10014 62 GQSGVIGLIVRDLS-APFYAELT-AGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLN-QGVDGVVIAGAAGSSDDLRE 138 (342)
T ss_pred CCCCEEEEEeCCCc-cchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCcHHHHH
Confidence 35566777773222 11122233 4566778888877666555432 223344455533 35899999988765455666
Q ss_pred HHHcCCCCCCCCCccEEEe
Q 003866 355 GLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGII 373 (790)
.|... .+|+-.+
T Consensus 139 ~l~~~-------~iPvV~~ 150 (342)
T PRK10014 139 MAEEK-------GIPVVFA 150 (342)
T ss_pred HHhhc-------CCCEEEE
Confidence 66543 4676666
No 137
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.16 E-value=21 Score=33.49 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=40.9
Q ss_pred eecceeeeccc------ccCCcceEEEEecCC-----------------cceEEEEEeecCCCCCccccccCCeeeeeEE
Q 003866 164 LTSKALVWGSH------VLPLDDIVSVSYNNG-----------------LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDY 220 (790)
Q Consensus 164 ~~~~~~~~~~~------~l~l~dv~~~~~~~~-----------------~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~ 220 (790)
.....|+|+.. .|.|+||--++.-.. ...|||.+-+. . ..+++
T Consensus 30 ~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~-------------~-~~k~L 95 (115)
T cd01248 30 EKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTD-------------L-NLKSL 95 (115)
T ss_pred CCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCC-------------C-CeeEE
Confidence 35778999843 488888855543322 24455553221 1 35779
Q ss_pred EeecCCHHHHHHHHhhh
Q 003866 221 RFLASTTEEAIQWVGGF 237 (790)
Q Consensus 221 ~f~~~~~~~a~~W~~~~ 237 (790)
.|.++|.++|+.|++.|
T Consensus 96 ~lVA~s~~~a~~W~~gL 112 (115)
T cd01248 96 DLVAPSEEEAKTWVSGL 112 (115)
T ss_pred EEEECCHHHHHHHHHHH
Confidence 99999999999999987
No 138
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=38.08 E-value=77 Score=35.77 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=54.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++|+..+..-+ . ..+ +.+...|+.+|+++.++.- ..+ ....++++.+.. .++|.||++|| |.+-.+.-
T Consensus 27 ~~~lvvt~~~~~~-~--g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GS~~D~aK 100 (374)
T cd08189 27 KKVLIVTDKGLVK-L--GLL-DKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRE-NGCDAILAVGG-GSVIDCAK 100 (374)
T ss_pred CeEEEEeCcchhh-c--ccH-HHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHHH
Confidence 6899988765432 1 234 4677889999988766521 112 223344444332 35799999999 45555444
Q ss_pred HH---HcCCC----------CCCCCCccEEEeec--CCcchh
Q 003866 355 GL---LSRGN----------QKEGISIPIGIIPA--GSDNSL 381 (790)
Q Consensus 355 GL---~~r~d----------~~~~~~iPLGIIPa--GTGNdf 381 (790)
.+ +..+. ......+|+..||. |||--.
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~ 142 (374)
T cd08189 101 AIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEV 142 (374)
T ss_pred HHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCcccccc
Confidence 32 22211 00112378999997 555433
No 139
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.02 E-value=1.3e+02 Score=28.85 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----------------chhHHHHHHHhhhcCCCCceEE
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----------------AGHAKNLASTVDISSCPDGIIC 342 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~----------------~~hA~ela~~~~~~~~~D~IVv 342 (790)
+|+++|.=-..-.+...++. +.+...+++.|++++++.... .++..++.+++.. .|+||+
T Consensus 1 Mkilii~gS~r~~~~t~~l~-~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~---aD~iI~ 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLA-EAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE---ADGIIF 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHH-HHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH---SSEEEE
T ss_pred CEEEEEECcCCCCCHHHHHH-HHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec---CCeEEE
Confidence 45666653222334555555 577888888899998886654 2344455555532 477666
Q ss_pred EeC--chHHHHHHHHHHcC
Q 003866 343 VGG--DGIINEVLNGLLSR 359 (790)
Q Consensus 343 vGG--DGTlnEVlNGL~~r 359 (790)
+.= -|.+...+..++++
T Consensus 77 ~sP~y~~~~s~~lK~~lD~ 95 (152)
T PF03358_consen 77 ASPVYNGSVSGQLKNFLDR 95 (152)
T ss_dssp EEEEBTTBE-HHHHHHHHT
T ss_pred eecEEcCcCChhhhHHHHH
Confidence 632 33444444444433
No 140
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=37.56 E-value=2.2e+02 Score=29.08 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=41.8
Q ss_pred hhHHHhHHHHHHHcCCeEEEEEeCCchh--HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 296 KVFHDIVEPIFKLAGFKLEVVKTTSAGH--AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 296 kv~~~~I~plL~~agi~~~v~~Te~~~h--A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
.++ .-++..+++.|+++.+..+..... ..++.+.+.. ..+|+||+.+++....+.++.+... .+|+-++
T Consensus 16 ~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvv~i 86 (270)
T cd01545 16 EIQ-LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQR-SRVDGVILTPPLSDNPELLDLLDEA-------GVPYVRI 86 (270)
T ss_pred HHH-HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHH-CCCCEEEEeCCCCCccHHHHHHHhc-------CCCEEEE
Confidence 444 467788888998887765553322 2233333322 3579999998875445666666543 3666555
No 141
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=37.25 E-value=2.7e+02 Score=29.78 Aligned_cols=87 Identities=10% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+...+.|++.-.. ..-...+. ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+..-.+.+..
T Consensus 59 ~~~~Igvi~~~~~-~~~~~~~~-~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~ 135 (327)
T TIGR02417 59 RSRTIGLVIPDLE-NYSYARIA-KELEQQCREAGYQLLIACSDDNPDQEKVVIENLLA-RQVDALIVASCMPPEDAYYQK 135 (327)
T ss_pred CCceEEEEeCCCC-CccHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCChHHHHH
Confidence 4566777763222 21222333 4677788888988876655432 222334444432 358999998876433456666
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|... .+|+-++
T Consensus 136 l~~~-------~iPvV~~ 146 (327)
T TIGR02417 136 LQNE-------GLPVVAL 146 (327)
T ss_pred HHhc-------CCCEEEE
Confidence 6443 3666555
No 142
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=36.68 E-value=2.7e+02 Score=28.39 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=40.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+.+.++.+... ..-.++.+.+. ...+|+||+.+.+..- ..++.|... ++|+-++
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-~~~~~l~~~-------~ipvV~~ 84 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLL-SQRVDGIIVVPHEQSA-EQLEDLLKR-------GIPVVFV 84 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEcCCCCCh-HHHHHHHhC-------CCCEEEE
Confidence 4677788889988877766432 22234444443 2358999999887653 456666554 4666555
No 143
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=36.59 E-value=76 Score=29.56 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=33.7
Q ss_pred ccccCCcceEEEEecCCc---ceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHHHhhhh
Q 003866 173 SHVLPLDDIVSVSYNNGL---RHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 173 ~~~l~l~dv~~~~~~~~~---~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
..+|.|.+|..|.-.... .-|.|+. ..++|.|.++|.+|.+.|..+|.
T Consensus 49 ~~vI~L~~c~~v~~~~d~k~~~~f~i~t------------------~dr~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 49 KRVIPLESCFNINKRADAKHRHLIALYT------------------RDEYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred eEEEEccceEEEeeccccccCeEEEEEe------------------CCceEEEEeCCHHHHHHHHHHHh
Confidence 348899999887633222 1244432 11479999999999999999983
No 144
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=35.84 E-value=2.7e+02 Score=31.44 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCch--hHHHHHHHhhhc--CCCCceEEEeCchHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAG--HAKNLASTVDIS--SCPDGIICVGGDGIINEV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~~--hA~ela~~~~~~--~~~D~IVvvGGDGTlnEV 352 (790)
++++|+..+..-+ ..+...|+.+++++.++. ...+. ...+.++.+... ..+|.||.+||= .+-.+
T Consensus 26 ~~~lvvtd~~~~~--------~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGG-S~iD~ 96 (347)
T cd08184 26 DPAVFFVDDVFQG--------KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGG-STLDV 96 (347)
T ss_pred CeEEEEECcchhh--------hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCc-HHHHH
Confidence 4566666433211 234456888888877652 22222 233444333221 147999999994 44444
Q ss_pred HHHH---HcCCC-------C--CCCCCccEEEeec--CCcchhhh
Q 003866 353 LNGL---LSRGN-------Q--KEGISIPIGIIPA--GSDNSLVW 383 (790)
Q Consensus 353 lNGL---~~r~d-------~--~~~~~iPLGIIPa--GTGNdfAr 383 (790)
.-++ +..+. + .....+|+..||. |||--..+
T Consensus 97 AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~ 141 (347)
T cd08184 97 AKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASR 141 (347)
T ss_pred HHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCC
Confidence 4332 22211 0 0112468999996 77655443
No 145
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.84 E-value=2.6e+02 Score=29.03 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=40.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+++.+..+.......+...........|+||+.+.+=. .+.++.|... .+|+-++
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~-------~iPvv~~ 84 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPT-------ERPVVLV 84 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhc-------CCCEEEE
Confidence 4677788889988888776654433444433222335899999987533 3455555443 4666555
No 146
>PRK07308 flavodoxin; Validated
Probab=35.83 E-value=1.8e+02 Score=27.97 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe---CchHHHH----
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINE---- 351 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GDGTlnE---- 351 (790)
.++.|++=-.. |...++. +.|...|...|+.+++........ .++. .+|.||++- |+|.+.+
T Consensus 2 ~~~~IvY~S~t--GnTe~iA-~~ia~~l~~~g~~~~~~~~~~~~~-----~~l~---~~d~vi~g~~t~g~G~~p~~~~~ 70 (146)
T PRK07308 2 ALAKIVYASMT--GNTEEIA-DIVADKLRELGHDVDVDECTTVDA-----SDFE---DADIAIVATYTYGDGELPDEIVD 70 (146)
T ss_pred ceEEEEEECCC--chHHHHH-HHHHHHHHhCCCceEEEecccCCH-----hHhc---cCCEEEEEeCccCCCCCCHHHHH
Confidence 36778884444 4555655 467778888888887765543321 1222 257766654 7786653
Q ss_pred HHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 352 VLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 352 VlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
++..|... .....+++++-.|.
T Consensus 71 fl~~l~~~----~l~~k~~~vfG~Gd 92 (146)
T PRK07308 71 FYEDLADL----DLSGKIYGVVGSGD 92 (146)
T ss_pred HHHHHhcC----CCCCCEEEEEeeCC
Confidence 33333222 12346677776654
No 147
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.71 E-value=3e+02 Score=28.26 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=35.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhH-HHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHA-KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA-~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
+.++..++..|+.+.+..++..... .++.+.+. ...+|+||+.+.+.. ++++.|...
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~~~~--~~~~~l~~~ 79 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLE-DGKVDGIILLGGIST--EYIKEIKEL 79 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH-HCCCCEEEEeCCCCh--HHHHHHhhc
Confidence 4677788889988877766543321 22333332 245899999987643 456666544
No 148
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.52 E-value=2.6e+02 Score=29.38 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=39.2
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+.+.+..+.. ...-.++.+.+.. ..+|+||+.+.|.. ..+.+..+... ++|+-++
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiil~~~~~~~~~~~~~~~~~~-------~iPvV~~ 87 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIA-LKPDGIVLGGVDAAELQAELELAQKA-------GIPVVGW 87 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCHHHHHHHHHHHHHC-------CCCEEEe
Confidence 466777888887766654432 2222345555543 35899999998743 33445555432 4677666
No 149
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=35.43 E-value=1.8e+02 Score=30.12 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh---HHHHHHHhhhcCCCCceEEEeCch-HHHHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH---AKNLASTVDISSCPDGIICVGGDG-IINEVLNG 355 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h---A~ela~~~~~~~~~D~IVvvGGDG-TlnEVlNG 355 (790)
++.||+...+...- ..++ +.++..+++.|+++.+..+...++ ..++.+.+.. ..+|+||+.+.+. ++.+.+..
T Consensus 1 ~igvi~~~~~~~~~-~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~ 77 (275)
T cd06320 1 KYGVVLKTLSNEFW-RSLK-EGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMIN-KGYKGLLFSPISDVNLVPAVER 77 (275)
T ss_pred CeeEEEecCCCHHH-HHHH-HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH-hCCCEEEECCCChHHhHHHHHH
Confidence 35667754332221 2333 467778888998887765543322 2344445433 3579999888764 45677777
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
+.+. .+|+-.+
T Consensus 78 ~~~~-------~iPvV~~ 88 (275)
T cd06320 78 AKKK-------GIPVVNV 88 (275)
T ss_pred HHHC-------CCeEEEE
Confidence 7554 4666555
No 150
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=35.36 E-value=2e+02 Score=29.93 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=41.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHH-HHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGII-NEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTl-nEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+.++..+++.|+.+.+..+.......+..+.+.. ..+|+||+.+-|... -++++.+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~ 85 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGA-QGAKGFVICVPDVKLGPAIVAKAKAY-------NMKVVAV 85 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHH-cCCCEEEEccCchhhhHHHHHHHHhC-------CCeEEEe
Confidence 4677888889988776655533322334444433 357999999988533 3456666554 4666655
No 151
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.33 E-value=1.9e+02 Score=29.80 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHc---CCeEEEEEeCCch---hHHHHHHHhhhcCCCCceEEEeCch-HHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLA---GFKLEVVKTTSAG---HAKNLASTVDISSCPDGIICVGGDG-IINEV 352 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~a---gi~~~v~~Te~~~---hA~ela~~~~~~~~~D~IVvvGGDG-TlnEV 352 (790)
|+.|+++-.+. .-...++ +.++..+++. |..+++......+ ...+..+.+.. ..+|+||+.+.|- .+.++
T Consensus 1 ~Ig~i~~~~~~-~~~~~~~-~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~~~~~~~~ 77 (272)
T cd06300 1 KIGLSNSYAGN-TWRAQML-DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIA-QGVDAIIINPASPTALNPV 77 (272)
T ss_pred CeEEeccccCC-hHHHHHH-HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHH
Confidence 35566643322 1222333 4566777777 8744444433322 23344555433 3589999999884 35567
Q ss_pred HHHHHcCCCCCCCCCccEEEee
Q 003866 353 LNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIP 374 (790)
++.+.+. .+|+-.+-
T Consensus 78 l~~~~~~-------~iPvv~~~ 92 (272)
T cd06300 78 IEEACEA-------GIPVVSFD 92 (272)
T ss_pred HHHHHHC-------CCeEEEEe
Confidence 7776554 46766653
No 152
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=35.18 E-value=2.4e+02 Score=29.82 Aligned_cols=87 Identities=8% Similarity=0.087 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCc-hHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGD-GIINEVLNG 355 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGD-GTlnEVlNG 355 (790)
.+.+.||+ |.....-..+++ ..++..+++.|+.+.+..+.. +....++.+.+.. ..+|+||+.+.| .++.+.+..
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~-~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~-~~~dgiii~~~~~~~~~~~l~~ 102 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVGNAVKM 102 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHH-HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHHHHHHHH
Confidence 34555555 544332233444 467788889998887765532 2333444555433 347888887765 344566665
Q ss_pred HHcCCCCCCCCCccEEEee
Q 003866 356 LLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIP 374 (790)
+... ++|+-.+-
T Consensus 103 ~~~~-------~ipvV~~~ 114 (295)
T PRK10653 103 ANQA-------NIPVITLD 114 (295)
T ss_pred HHHC-------CCCEEEEc
Confidence 5543 46766663
No 153
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.02 E-value=2.3e+02 Score=29.17 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=39.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+++.++.++... ...+..+.+.. ..+|+||+.+.+.. ..+.+..+... ++|+-++
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 86 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAID-KGVSGIIISPTNSSAAVTLLKLAAQA-------KIPVVIA 86 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEcCCchhhhHHHHHHHHHC-------CCCEEEE
Confidence 45667788888888766554322 22334444432 45899998887754 44666555443 4666554
No 154
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.49 E-value=2.4e+02 Score=30.09 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=42.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcC--CCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISS--CPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~--~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
..++..+++.|+.+.+..++...+ ..++++.+. .. .+|+||+.+.+-...+++..+... .+|+-++=
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~-~~~~~vdgiIi~~~~~~~~~~~~~~~~~-------giPvV~~~ 89 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTIL-QRPDKPDALIFTNEKSVAPELLRLAEGA-------GVKLFLVN 89 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHH-HhccCCCEEEEcCCccchHHHHHHHHhC-------CCeEEEEe
Confidence 457778888898877765543222 234445543 34 589999988765556677776654 46766663
No 155
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=34.41 E-value=36 Score=30.39 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.++++.|+++|+
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~ 98 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQ 98 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 156
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.11 E-value=3.1e+02 Score=28.08 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCC
Q 003866 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (790)
Q Consensus 282 lVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~ 360 (790)
.||+ |.....--..++ ..++..+++.|+++.+..+....+ -.++.+.+.. ..+|+||++..|-. ...+..+...
T Consensus 3 ~vi~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~~-~~~~~~~~~~- 77 (270)
T cd06296 3 GLVF-PDLDSPWASEVL-RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA-RRTDGVILVTPELT-SAQRAALRRT- 77 (270)
T ss_pred EEEE-CCCCCccHHHHH-HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH-cCCCEEEEecCCCC-hHHHHHHhcC-
Confidence 4455 443332233444 467778888898887766654332 2344555533 45799999887643 2445555443
Q ss_pred CCCCCCCccEEEe
Q 003866 361 NQKEGISIPIGII 373 (790)
Q Consensus 361 d~~~~~~iPLGII 373 (790)
++|+-.+
T Consensus 78 ------~ipvV~i 84 (270)
T cd06296 78 ------GIPFVVV 84 (270)
T ss_pred ------CCCEEEE
Confidence 4666555
No 157
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=33.97 E-value=1.8e+02 Score=30.84 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCCCeEEEEEcCCC------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh--cCCCCc-eEEEeCc
Q 003866 276 KSPPKMLVILNPRS------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI--SSCPDG-IICVGGD 346 (790)
Q Consensus 276 ~rpkrllVIINP~S------GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~--~~~~D~-IVvvGGD 346 (790)
++++++.+|||-.. ....+..-. +.++.+|+..|+++.+..=-...+..+.++++.. ...+|. ||++=|-
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D~-~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sH 84 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVDA-ENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSH 84 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHHH-HHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCC
Confidence 34666666665421 111122223 5788899999998876554444555555555542 123453 4444445
Q ss_pred h
Q 003866 347 G 347 (790)
Q Consensus 347 G 347 (790)
|
T Consensus 85 G 85 (243)
T cd00032 85 G 85 (243)
T ss_pred C
Confidence 5
No 158
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=33.94 E-value=2.7e+02 Score=28.83 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=30.8
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCc
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGD 346 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGD 346 (790)
+.++..+++.|+++.+..+.......++.+.+.. ..+|+||+++.+
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~ 66 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESVEDADYEPNLRQLAA-QGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHH-cCCCEEEECCcc
Confidence 4667778888887766655444444455566543 347999999877
No 159
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=33.93 E-value=71 Score=32.35 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeC--chHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG--DGIINEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGG--DGTlnEVlNGL 356 (790)
++++||+-...| ..+++. +.|...|.. |++++++....... .++. .||.||+.++ -|.+...+..+
T Consensus 1 MkilIvY~S~~G--~T~~iA-~~Ia~~l~~-g~~v~~~~~~~~~~-------~~l~-~yD~vIlGspi~~G~~~~~~~~f 68 (177)
T PRK11104 1 MKTLILYSSRDG--QTRKIA-SYIASELKE-GIQCDVVNLHRIEE-------PDLS-DYDRVVIGASIRYGHFHSALYKF 68 (177)
T ss_pred CcEEEEEECCCC--hHHHHH-HHHHHHhCC-CCeEEEEEhhhcCc-------cCHH-HCCEEEEECccccCCcCHHHHHH
Confidence 468899966555 444555 467777876 88777765443211 1122 3798877765 46666666665
Q ss_pred HcCCCCCCCCCccEEEeecCC
Q 003866 357 LSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGT 377 (790)
+.+.. ......+++++-.|-
T Consensus 69 l~~~~-~~l~~K~v~~F~v~l 88 (177)
T PRK11104 69 VKKHA-TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHHH-HHhCCCeEEEEEech
Confidence 54311 112356888888873
No 160
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=33.80 E-value=69 Score=35.90 Aligned_cols=53 Identities=25% Similarity=0.418 Sum_probs=38.0
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+..++++.+.. .+.|.+|++|||||+..+ +.|.+. .+++--||.==-||+.-+
T Consensus 82 ~~~~~~~~l~~-~~Id~LivIGGdgS~~~a-~~L~~~-------gi~vigiPkTIDNDl~gt 134 (324)
T TIGR02483 82 GDDKIVANLKE-LGLDALIAIGGDGTLGIA-RRLADK-------GLPVVGVPKTIDNDLEAT 134 (324)
T ss_pred HHHHHHHHHHH-cCCCEEEEECCchHHHHH-HHHHhc-------CCCEEeeccccCCCCcCC
Confidence 34455555543 347999999999999654 556543 488888999778999854
No 161
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.42 E-value=1.8e+02 Score=31.42 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCchhHHHHHHHhhhcCCCCceEEEeCch-HHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLASTVDISSCPDGIICVGGDG-IINEVLN 354 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~--Te~~~hA~ela~~~~~~~~~D~IVvvGGDG-TlnEVlN 354 (790)
.+|+.+|+++.+.-++ ... +.++..+++.|+++.... .....+...+++++... .+|+|++. +|+ ....++.
T Consensus 132 ~~~~~~i~~~~~~~g~--~~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~-~pdaV~~~-~~~~~a~~~~~ 206 (341)
T cd06341 132 GTRAVALVTALSAAVS--AAA-ALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA-GADAIITV-LDAAVCASVLK 206 (341)
T ss_pred CcEEEEEEeCCcHHHH--HHH-HHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc-CCCEEEEe-cChHHHHHHHH
Confidence 4678777766542222 223 456778888988754322 22234555666666433 47877655 566 7888888
Q ss_pred HHHcCC
Q 003866 355 GLLSRG 360 (790)
Q Consensus 355 GL~~r~ 360 (790)
.+.+..
T Consensus 207 ~~~~~G 212 (341)
T cd06341 207 AVRAAG 212 (341)
T ss_pred HHHHcC
Confidence 887763
No 162
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=33.42 E-value=2.9e+02 Score=29.17 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=39.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLAST 330 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~ 330 (790)
+++..|.|.++|-|+..-. -.+.-.|...|..+-++-++.++.+..+...
T Consensus 1 M~iI~v~n~KGGvGKTT~a--~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTAL--MGLCAALASDGKRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CeEEEEECCCCCccHHHHH--HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHh
Confidence 3688999999999987533 3567788889999999999888887776543
No 163
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.39 E-value=2.4e+02 Score=30.20 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=39.6
Q ss_pred HhHHHHHHH--cCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKL--AGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~--agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+.++..++. .|+.+.+..+... ....++.+.+.. ..+|+||+++.|.. +..+++.+... .+|+-++
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALA-KGVDLLAVNLVDPTAAQTVINKAKQK-------NIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEecCchhhHHHHHHHHHHC-------CCCEEEe
Confidence 456777777 6666555544321 112234444433 35899999988865 56777777554 4676655
No 164
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=33.04 E-value=1.3e+02 Score=33.14 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=39.1
Q ss_pred EEEEcCCCCCCC-chhhHHHhHHHHHHHcCCeEEEEEeCCch------h----HHHHHHHhhhcCCCCceEEE-eCchHH
Q 003866 282 LVILNPRSGRGR-SSKVFHDIVEPIFKLAGFKLEVVKTTSAG------H----AKNLASTVDISSCPDGIICV-GGDGII 349 (790)
Q Consensus 282 lVIINP~SGkG~-a~kv~~~~I~plL~~agi~~~v~~Te~~~------h----A~ela~~~~~~~~~D~IVvv-GGDGTl 349 (790)
.-|+.|.++-.. ....++ .....|+..|+++.+-.+-... . |.+|.+.+. +...++|+++ ||+|+.
T Consensus 3 I~ivAPS~~~~~~~~~~~~-~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~-Dp~i~aI~~~rGG~g~~ 80 (308)
T cd07062 3 IAVVSPSSGIPGELPHRLE-RAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFA-DPSIKAIIPTIGGDDSN 80 (308)
T ss_pred EEEEeCCCCCcccCHHHHH-HHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhc-CCCCCEEEECCcccCHh
Confidence 457889887542 134453 4556889999887665553222 2 334433333 2346777665 889874
Q ss_pred H
Q 003866 350 N 350 (790)
Q Consensus 350 n 350 (790)
.
T Consensus 81 r 81 (308)
T cd07062 81 E 81 (308)
T ss_pred h
Confidence 3
No 165
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=33.03 E-value=2.4e+02 Score=28.97 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=39.8
Q ss_pred HhHHHHHHH-cCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKL-AGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~-agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++ .|+.+.+..+.. .....+..+.+.. ...|+||+.+.|.. ..+++..|... ++|+-.+
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~l~~~-------~iPvv~~ 87 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIA-QGVDAIIVVPVDTAATAPIVKAANAA-------GIPLVYV 87 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 456677777 777766654422 2233344555433 35799999988854 35666666554 4676655
No 166
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.94 E-value=77 Score=35.20 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=37.6
Q ss_pred HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 324 A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
...+++.+.. .+.|.+|++|||||+..+ +.|.+. .++++--||.=--||+.-+
T Consensus 80 ~~~~~~~l~~-~~Id~Li~IGGdgs~~~a-~~L~e~------~~i~vigiPkTIDNDl~~t 132 (301)
T TIGR02482 80 RQKAVENLKK-LGIEGLVVIGGDGSYTGA-QKLYEE------GGIPVIGLPGTIDNDIPGT 132 (301)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCchHHHHH-HHHHHh------hCCCEEeecccccCCCcCc
Confidence 3445555543 347999999999998765 344331 2588888999889999854
No 167
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=32.54 E-value=2.3e+02 Score=35.88 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHH--HcCCeEEEEE----eCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFK--LAGFKLEVVK----TTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~--~agi~~~v~~----Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
++++||..+..-+.... +.+...|+ ..++++.++. -.......++++.+...+ .|.||++||=-.+--.
T Consensus 481 ~~~lvVtd~~~~~~g~~----~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~-~D~IIaiGGGSviD~A 555 (862)
T PRK13805 481 KRAFIVTDRFMVELGYV----DKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFK-PDTIIALGGGSPMDAA 555 (862)
T ss_pred CEEEEEECcchhhcchH----HHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC-CCEEEEeCCchHHHHH
Q ss_pred --HHHHHcCCCCCC--------------------CCCccEEEeec--CCc
Q 003866 353 --LNGLLSRGNQKE--------------------GISIPIGIIPA--GSD 378 (790)
Q Consensus 353 --lNGL~~r~d~~~--------------------~~~iPLGIIPa--GTG 378 (790)
+..++..+...- ...+|+..||. |||
T Consensus 556 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTG 605 (862)
T PRK13805 556 KIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTG 605 (862)
T ss_pred HHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCCCcc
No 168
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=32.04 E-value=1.2e+02 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.4
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
+.+.|.++|.+++++|..+|.
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~ 98 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALR 98 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHH
Confidence 689999999999999999984
No 169
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=32.02 E-value=1.7e+02 Score=29.63 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=50.6
Q ss_pred chhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHHHHHcCCCCCCCCCcc
Q 003866 294 SSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLNGLLSRGNQKEGISIP 369 (790)
Q Consensus 294 a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlNGL~~r~d~~~~~~iP 369 (790)
...+. +++...|+..|++|++.+.. .+++..++++++... +.+. |.++|+.+-|--|+.++-. .|
T Consensus 10 D~~~~-~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~-g~~viIa~AG~aa~Lpgvva~~t~---------~P 78 (156)
T TIGR01162 10 DLPTM-KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEER-GIKVIIAGAGGAAHLPGMVAALTP---------LP 78 (156)
T ss_pred hHHHH-HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHC-CCeEEEEeCCccchhHHHHHhccC---------CC
Confidence 33445 46777999999999887753 356677888876543 3454 4566889999988888753 45
Q ss_pred EEEeecCCc
Q 003866 370 IGIIPAGSD 378 (790)
Q Consensus 370 LGIIPaGTG 378 (790)
+--+|.-++
T Consensus 79 VIgvP~~~~ 87 (156)
T TIGR01162 79 VIGVPVPSK 87 (156)
T ss_pred EEEecCCcc
Confidence 555666443
No 170
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=31.95 E-value=1.1e+02 Score=34.96 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=45.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-------hhHHHHHHHhhhcCCCCceEEEeCchHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-------GHAKNLASTVDISSCPDGIICVGGDGII 349 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-------~hA~ela~~~~~~~~~D~IVvvGGDGTl 349 (790)
.-|+.+++-.|.=-+-- .+ +.++..|++.+|.|+++.-..+ .+|.++++. +.+|.+|++||- ..
T Consensus 69 gaKk~llvTDkni~~~~---~~-~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~----~~fDs~vaiGGG-Sa 139 (465)
T KOG3857|consen 69 GAKKTLLVTDKNIAKLG---LV-KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK----KNFDSFVAIGGG-SA 139 (465)
T ss_pred CccceEEeeCCChhhcc---cH-HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh----cccceEEEEcCc-ch
Confidence 55788888876543222 23 4677899999999998754443 355666655 458999999994 44
Q ss_pred HHHH
Q 003866 350 NEVL 353 (790)
Q Consensus 350 nEVl 353 (790)
+...
T Consensus 140 ~Dta 143 (465)
T KOG3857|consen 140 HDTA 143 (465)
T ss_pred hhhH
Confidence 4433
No 171
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=31.52 E-value=1.5e+02 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEE
Q 003866 298 FHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIIC 342 (790)
Q Consensus 298 ~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVv 342 (790)
+++.++....+.|++++++.+.+.+...+...++.. .+|+||+
T Consensus 30 i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~--~~dgiII 72 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARD--DVDGIII 72 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTC--TTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHh--hCCEEEE
Confidence 445666667778999999999999988888887643 3677664
No 172
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=31.41 E-value=2.5e+02 Score=29.40 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=30.0
Q ss_pred hHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHH
Q 003866 301 IVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (790)
Q Consensus 301 ~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnE 351 (790)
.+...|.+.|+.+.++..+.+. ..+....+ ..+|+||+.||.|...+
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~---~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDPR-LADEAAVA---AQFDGVLLSPGPGTPER 61 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCcC-HHHHHHhh---cCCCEEEECCCCCChhh
Confidence 3456788889988877655422 22222211 24899999999987653
No 173
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.29 E-value=2.5e+02 Score=28.95 Aligned_cols=70 Identities=11% Similarity=-0.019 Sum_probs=38.9
Q ss_pred hhHHHhHHHHHHHcCCeEEEEEeCCchhH---HHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEE
Q 003866 296 KVFHDIVEPIFKLAGFKLEVVKTTSAGHA---KNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIG 371 (790)
Q Consensus 296 kv~~~~I~plL~~agi~~~v~~Te~~~hA---~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLG 371 (790)
+++ ..++..+++.|..+.++......+. .++.+.+. ...+|+||+.+.|.. ..+++..+... .+|+-
T Consensus 16 ~~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~dgiIi~~~~~~~~~~~i~~~~~~-------~ipvv 86 (271)
T cd06321 16 ALA-KGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFI-AAKVDLILLNAVDSKGIAPAVKRAQAA-------GIVVV 86 (271)
T ss_pred HHH-HHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHH-HhCCCEEEEeCCChhHhHHHHHHHHHC-------CCeEE
Confidence 344 4567778883444444433222222 23333432 245899999988764 46677766554 46766
Q ss_pred Eee
Q 003866 372 IIP 374 (790)
Q Consensus 372 IIP 374 (790)
.+-
T Consensus 87 ~~~ 89 (271)
T cd06321 87 AVD 89 (271)
T ss_pred Eec
Confidence 663
No 174
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=31.25 E-value=1.7e+02 Score=33.39 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=62.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
++.+||.-+.. .+++.+.+...|...|+.+...+.... ++...+++.+.. ..+|.||.+|| |.+..++-.+
T Consensus 31 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~-~~~d~vIGVGG-Gk~iD~aK~~ 103 (360)
T COG0371 31 SRALVVTGENT-----YAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGE-DGADVVIGVGG-GKTIDTAKAA 103 (360)
T ss_pred CceEEEEChhH-----HHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcc-cCCCEEEEecC-cHHHHHHHHH
Confidence 67888875443 355667888899999875544444332 334445554432 34689999998 8888888888
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
..+- ++|+-++|.=-.+|=..+
T Consensus 104 A~~~------~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 104 AYRL------GLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHc------CCCEEEecCccccccccC
Confidence 7653 689999998666665443
No 175
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.81 E-value=2.9e+02 Score=28.10 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCC
Q 003866 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (790)
Q Consensus 282 lVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~ 360 (790)
.||+ |.....-...++ ..++..+++.|+.+.+..+.. .....++++.+.. ..+|+||+++.+....++++.+...
T Consensus 3 ~vi~-~~~~~~~~~~~~-~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~- 78 (268)
T cd06289 3 GLVI-NDLTNPFFAELA-AGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLE-HGVAGIILCPAAGTSPDLLKRLAES- 78 (268)
T ss_pred EEEe-cCCCcchHHHHH-HHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH-cCCCEEEEeCCCCccHHHHHHHHhc-
Confidence 3444 544433333333 567778888888776554432 2223445555543 4589999998776544567766543
Q ss_pred CCCCCCCccEEEe
Q 003866 361 NQKEGISIPIGII 373 (790)
Q Consensus 361 d~~~~~~iPLGII 373 (790)
++|+-.+
T Consensus 79 ------~ipvV~~ 85 (268)
T cd06289 79 ------GIPVVLV 85 (268)
T ss_pred ------CCCEEEE
Confidence 4666555
No 176
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=30.80 E-value=4e+02 Score=27.33 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=39.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+-++..+++.|+.+.++.+..... ..++.+.+.. ..+|+||+++-|-.... +..+... .+|+-++-
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgii~~~~~~~~~~-~~~~~~~-------~ipvV~~~ 85 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHHSAEKEREAIEFLLE-RRCDALILHSKALSDDE-LIELAAQ-------VPPLVLIN 85 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHH-cCCCEEEEecCCCCHHH-HHHHhhC-------CCCEEEEe
Confidence 467778888999888776654322 2234444433 45899999987643322 4555433 46666664
No 177
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=30.79 E-value=89 Score=34.93 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=38.8
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+...+++.+.. .+.|.+|++|||||+.-+. .|.+. .+++--||.==-||+.-+
T Consensus 80 ~~~~~~~~l~~-~~Id~Li~IGGdgs~~~a~-~L~e~-------~i~vigiPkTIDNDi~gt 132 (317)
T cd00763 80 GQAKAIEQLKK-HGIDALVVIGGDGSYMGAM-RLTEH-------GFPCVGLPGTIDNDIPGT 132 (317)
T ss_pred HHHHHHHHHHH-cCCCEEEEECCchHHHHHH-HHHHc-------CCCEEEecccccCCCCCC
Confidence 33455555544 3579999999999998764 45443 489999999888998854
No 178
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.44 E-value=1.8e+02 Score=28.68 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=28.5
Q ss_pred HhHHHHHHHcCCeEEEEE--eCCchhHHHHHHHhhhcCCCCceEEEeCch
Q 003866 300 DIVEPIFKLAGFKLEVVK--TTSAGHAKNLASTVDISSCPDGIICVGGDG 347 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~--Te~~~hA~ela~~~~~~~~~D~IVvvGGDG 347 (790)
..++.+|++.|+++.... .+..+...+..+++..+..+|.||+.||=|
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 357788999998765433 333333334334332211479999999854
No 179
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=30.09 E-value=2.7e+02 Score=28.33 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=44.0
Q ss_pred HHHHHHHcCCeEEEEEeCCchhH---HHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEE-eecCC
Q 003866 302 VEPIFKLAGFKLEVVKTTSAGHA---KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGI-IPAGS 377 (790)
Q Consensus 302 I~plL~~agi~~~v~~Te~~~hA---~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGI-IPaGT 377 (790)
+...|...|++.. .+...-+. .+.++-+ ..+.+|.+|++.|||=+-.+++.|.++.- -.+|+ .+.+|
T Consensus 71 l~~~l~~~Gf~pv--~~kG~~Dv~laIDame~~-~~~~iD~~vLvSgD~DF~~Lv~~lre~G~------~V~v~g~~~~t 141 (160)
T TIGR00288 71 LIEAVVNQGFEPI--IVAGDVDVRMAVEAMELI-YNPNIDAVALVTRDADFLPVINKAKENGK------ETIVIGAEPGF 141 (160)
T ss_pred HHHHHHHCCceEE--EecCcccHHHHHHHHHHh-ccCCCCEEEEEeccHhHHHHHHHHHHCCC------EEEEEeCCCCC
Confidence 3457777887643 33333222 2222222 12458999999999999999999987641 22222 24556
Q ss_pred cchhhh
Q 003866 378 DNSLVW 383 (790)
Q Consensus 378 GNdfAr 383 (790)
...|.+
T Consensus 142 s~~L~~ 147 (160)
T TIGR00288 142 STALQN 147 (160)
T ss_pred hHHHHH
Confidence 666654
No 180
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.00 E-value=50 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++.++|+.+|.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHh
Confidence 679999999999999999984
No 181
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=29.74 E-value=2.7e+02 Score=32.25 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=57.9
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCC
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~ 360 (790)
||+-|..-.-.....+.+.+..+|.++|+.-.++ .+... ++...+......|.|+..|+..+-..|......+
T Consensus 151 VIlKps~~~p~~~~~~~~~~~~~l~~aGlP~gvv~~v~g~~----~~~~~L~~~~~v~~V~ftGs~~~g~~v~~~a~~~- 225 (465)
T cd07098 151 IVVKVSEQVAWSSGFFLSIIRECLAACGHDPDLVQLVTCLP----ETAEALTSHPVIDHITFIGSPPVGKKVMAAAAES- 225 (465)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCH----HHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhc-
Confidence 4455544332222223234556777777652222 22221 2233332223468888889999888888876543
Q ss_pred CCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCc
Q 003866 361 NQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (790)
Q Consensus 361 d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~ 402 (790)
..|+ ++-+| ||+-+- ++.--|+..++..|+.+.
T Consensus 226 ------~~~~-~lelg-G~~~~i-V~~dadl~~a~~~i~~~~ 258 (465)
T cd07098 226 ------LTPV-VLELG-GKDPAI-VLDDADLDQIASIIMRGT 258 (465)
T ss_pred ------CCeE-EEECC-CCCeEE-ECCCCCHHHHHHHHHHHH
Confidence 1233 45555 666553 333457888888888764
No 182
>PRK03202 6-phosphofructokinase; Provisional
Probab=29.65 E-value=89 Score=34.97 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=38.7
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
....+++.+.. .+.|.+|++|||||+.-+. .|.+. .+++--||.==-||+.-+
T Consensus 81 ~~~~~~~~l~~-~~Id~Li~IGGd~s~~~a~-~L~e~-------~i~vigiPkTIDNDl~gt 133 (320)
T PRK03202 81 GRAKAIENLKK-LGIDALVVIGGDGSYMGAK-RLTEH-------GIPVIGLPGTIDNDIAGT 133 (320)
T ss_pred HHHHHHHHHHH-cCCCEEEEeCChHHHHHHH-HHHhc-------CCcEEEecccccCCCCCC
Confidence 34455555543 3479999999999998754 46543 588889999778998853
No 183
>PRK05637 anthranilate synthase component II; Provisional
Probab=29.45 E-value=2.9e+02 Score=28.88 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
++++||=| +.+ |...+...|+..|..++++..+.. ..++. . ..+|+||+.||-|.+.+.
T Consensus 2 ~~il~iD~---~ds-----f~~nl~~~l~~~g~~~~v~~~~~~--~~~l~----~-~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 2 THVVLIDN---HDS-----FVYNLVDAFAVAGYKCTVFRNTVP--VEEIL----A-ANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CEEEEEEC---CcC-----HHHHHHHHHHHCCCcEEEEeCCCC--HHHHH----h-cCCCEEEEeCCCCCHHHh
Confidence 56666666 111 112466788899988887765422 33332 1 147999999999999886
No 184
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=29.33 E-value=3.2e+02 Score=28.55 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=36.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-----chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-----AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-----~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
+.++..++..|+++.+..+.. ...-.++.+.+.. ..+|+||+++.+....+.+..+.+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIv~~~~~~~~~~~~~l~~~ 83 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQ-SKPDYLIFTLDSLRHRKLIERVLAS 83 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHH-cCCCEEEEcCCchhhHHHHHHHHhC
Confidence 456778888898877654322 1222334445432 4589999988766556777776654
No 185
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.31 E-value=4.2e+02 Score=26.99 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=36.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+++.+..+.......+.+..+.....+|+||+++.+.. ..++..+... .+|+-.+
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~ 89 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEE-------KFPFVVI 89 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhc-------CCCEEEE
Confidence 4677788889988766544433222233333222334799999875432 2444555433 3565555
No 186
>PRK00861 putative lipid kinase; Reviewed
Probab=29.11 E-value=55 Score=35.53 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=44.6
Q ss_pred HHHHhhccCCCCCCCcEEEEEEEeee---eCCCCeeecCceeecCceeeeccccccccccc
Q 003866 726 RFFLLLQMGRHLSLPYVEYVKIKAGK---HTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 726 r~ll~~~~G~hl~~p~Ve~~kvk~~~---~~~~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
++|+.+..|+|...|+|+|++++... ..+..+++|||.+.. .++.++++|...+++-
T Consensus 236 ~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~~~~~~~DGE~~~~-~p~~i~v~p~al~v~~ 295 (300)
T PRK00861 236 HLLQTALQGNPAERDDIGYLRAKQVKITTDPPQKVVIDGEVVGT-TPIEIECLPRSLKVFA 295 (300)
T ss_pred HHHHHHhcCCCCCCCceEEEEccEEEEEeCCCeEEEECCccCCC-ceEEEEEECCEEEEEe
Confidence 45556678999999999999966533 233348999999875 4899999999888875
No 187
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.95 E-value=77 Score=31.59 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred CCCceEEEeCchHH--------HHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 336 CPDGIICVGGDGII--------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 336 ~~D~IVvvGGDGTl--------nEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
.+|.||+.||.|+. ...+..+..+ ..+|+-|-.|+. .||+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~-------~k~i~~ic~G~~-~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEA-------NKPVAAICHGPQ-ILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHc-------CCEEEEECcHHH-HHHH
Confidence 37999999997743 2233333332 468888888775 4554
No 188
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=28.90 E-value=95 Score=36.54 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=39.1
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHH---HHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLN---GLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN---GL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
+..++++.+.. .+.|.++++|||||+.-+.. .+..+ +.++++--||.==-||+.-
T Consensus 164 ~~~~iv~~L~~-~~I~~L~vIGGdgT~~~A~~L~ee~~~~-----g~~I~VIGIPKTIDNDI~~ 221 (459)
T PTZ00286 164 DPKVMVDTLIR-HGINILFTLGGDGTHRGALAIYKELRRR-----KLNISVVGIPKTIDNDIPI 221 (459)
T ss_pred hHHHHHHHHHH-cCCCEEEEeCCchHHHHHHHHHHHHHHh-----CCCceEEEeccccCCCCCC
Confidence 45566666654 35899999999999975532 23223 2368899999988899874
No 189
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.79 E-value=2.9e+02 Score=29.06 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=39.1
Q ss_pred HhHHHHHHHcCCeEEEEE-eCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVK-TTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~-Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+.+.++. ++. +....+..+.+.. ..+|+||+.+.|-. ..++++.+... .+|+-++
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTIS-QKPDIIISIPVDPVSTAAAYKKVAEA-------GIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHH-hCCCEEEEcCCCchhhhHHHHHHHHc-------CCcEEEe
Confidence 356677888888776443 222 2222234444332 35899999887754 35677777655 4666554
No 190
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.78 E-value=2e+02 Score=27.92 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=47.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
.-+.+-++-||.++...++.. .+..+|...|+++.+. ..--.-|....+++ +.+.+.+.| ||+-|++..+
T Consensus 35 ~i~~vev~~np~~~~~~g~G~---~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~----GIkv~~~~~--~~V~e~i~~~ 104 (121)
T COG1433 35 EIKNVEVIENPAASAEKGAGI---RIAELLVDEGVDVVIA-SNIGPNAYNALKAA----GIKVYVAPG--GTVEEAIKAF 104 (121)
T ss_pred cEEEEEEeecccccccCcchH---HHHHHHHHcCCCEEEE-CccCHHHHHHHHHc----CcEEEecCC--CCHHHHHHHH
Confidence 446678899997766555432 3556888898776433 23333445555543 456667667 9999999999
Q ss_pred HcC
Q 003866 357 LSR 359 (790)
Q Consensus 357 ~~r 359 (790)
..-
T Consensus 105 ~~g 107 (121)
T COG1433 105 LEG 107 (121)
T ss_pred hcC
Confidence 765
No 191
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=28.74 E-value=1.4e+02 Score=28.68 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE-EEeCCchhHHHHHHHhhhcCCCCceEEEe---CchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV-VKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v-~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GDGTlnEVlN 354 (790)
++++||+=...| ..+++. +.|...|...|+++++ +.... ..... .+.. .+|.||+.. |+|.+.+-+.
T Consensus 1 M~i~IiY~S~tG--nTe~iA-~~ia~~l~~~g~~v~~~~~~~~---~~~~~--~~~~-~~d~iilgs~t~~~g~~p~~~~ 71 (140)
T TIGR01754 1 MRILLAYLSLSG--NTEEVA-FMIQDYLQKDGHEVDILHRIGT---LADAP--LDPE-NYDLVFLGTWTWERGRTPDEMK 71 (140)
T ss_pred CeEEEEEECCCC--hHHHHH-HHHHHHHhhCCeeEEecccccc---cccCc--CChh-hCCEEEEEcCeeCCCcCCHHHH
Confidence 467888855554 555666 4777788888877652 21110 00011 1111 367777766 6887664444
Q ss_pred HHHcCCCCCCCCCccEEEeecC
Q 003866 355 GLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPaG 376 (790)
.++..-.. ....++++-.|
T Consensus 72 ~fl~~l~~---~~k~~avfgtg 90 (140)
T TIGR01754 72 DFIAELGY---KPSNVAIFGTG 90 (140)
T ss_pred HHHHHhcc---cCCEEEEEEcC
Confidence 44332110 13456666554
No 192
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=28.64 E-value=3.6e+02 Score=26.97 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=41.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+-++..++..|+++.++...... ...++++.+.. ..+|+||+.+.|.+... +..+... .+|+-.+
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~iii~~~~~~~~~-~~~~~~~-------~ipvv~~ 84 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLS-RRVDGIILAPSRLDDEL-LEELAAL-------GIPVVLV 84 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCcCEEEEecCCcchHH-HHHHHHc-------CCCEEEe
Confidence 56677777888887766554321 23455555543 45899999999987665 5555443 4666555
No 193
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.57 E-value=3.1e+02 Score=28.50 Aligned_cols=66 Identities=12% Similarity=-0.029 Sum_probs=39.2
Q ss_pred HhHHHHHHHcCCeEEEEEeCCch---hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAG---HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~---hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..++..|+++.+..+.... .-.+..+.+.. ..+|+||+.+.|.+-.+.+..+... .+|+-++
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiI~~~~~~~~~~~~~~~~~~-------giPvV~~ 87 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAA-WGADAILLGAVSPDGLNEILQQVAA-------SIPVIAL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChhhHHHHHHHHHC-------CCCEEEe
Confidence 35667788888887766544222 22234555433 3589999998876543345555443 4676655
No 194
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=28.52 E-value=1.1e+02 Score=34.48 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 324 A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
...+++.+.. .+.|.+|++|||||+..+. .|.+.- ..+..++++--||.=--||+.-
T Consensus 81 ~~~~~~~l~~-~~I~~Lv~IGGd~s~~~a~-~L~e~~-~~~~~~i~vigiPkTIDNDl~~ 137 (338)
T cd00363 81 RAKAAENLKK-HGIDALVVIGGDGSYTGAD-LLTEEW-PSKYQGFNVIGLPGTIDNDIKG 137 (338)
T ss_pred HHHHHHHHHH-hCCCEEEEeCCHHHHHHHH-HHHHHH-HhcCCCccEEEeeecccCCCcC
Confidence 3445555543 3479999999999997653 222210 0112368999999766899874
No 195
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=28.50 E-value=3.4e+02 Score=27.09 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=60.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCe---EEEEEeCCchhHHHHHHHhhhcCCCCceEEEe----C----
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFK---LEVVKTTSAGHAKNLASTVDISSCPDGIICVG----G---- 345 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~---~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG----G---- 345 (790)
...|+.||+-..--. -..++. +-....|.++|+. ++++.....-+.--.++.+...+.||+||+.| |
T Consensus 6 ~~~ri~IV~s~fn~~-I~~~Ll-~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H 83 (141)
T PLN02404 6 EGLRFGVVVARFNEI-ITKNLL-EGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTH 83 (141)
T ss_pred CCCEEEEEEecCcHH-HHHHHH-HHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCch
Confidence 346888887544321 122333 3344567778874 66666666555555566665555699999987 5
Q ss_pred -chHHHHHHHHHHcCCCCCCCCCccEEEeecCCc-chhhhh
Q 003866 346 -DGIINEVLNGLLSRGNQKEGISIPIGIIPAGSD-NSLVWT 384 (790)
Q Consensus 346 -DGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTG-NdfArs 384 (790)
|=.-++|.+||++-.- +....+-+|||-.++. ..++|.
T Consensus 84 ~e~V~~~v~~gl~~vsl-~~~~PV~~GVLt~~~~eQA~~Ra 123 (141)
T PLN02404 84 YDAVANSAASGVLSAGL-NSGVPCIFGVLTCDDMEQALNRA 123 (141)
T ss_pred hHHHHHHHHHHHHHHHh-ccCCCEEEEEcCCCCHHHHHHHh
Confidence 3345677888876422 1123455667665554 234453
No 196
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.28 E-value=4.2e+02 Score=27.14 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=36.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcC
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSR 359 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r 359 (790)
+.++..+++.|+++.++.+... ....++.+.+.. ...|+||+.+.|.. +.+.+..+...
T Consensus 20 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~l~~~~~~ 80 (275)
T cd06317 20 KAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIA-QKVDGIILWPTDGQAYIPGLRKAKQA 80 (275)
T ss_pred HHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHH-cCCCEEEEecCCccccHHHHHHHHHC
Confidence 5677788889988877654322 222344444433 35899999888753 45677666554
No 197
>PRK09267 flavodoxin FldA; Validated
Probab=28.10 E-value=1.7e+02 Score=28.87 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=41.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe---CchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GDGTlnEVlNG 355 (790)
++++||+- |..|..+++. +.|...|..+ .++++...... . .++. .+|.||++. ++|-+...+..
T Consensus 2 mki~IiY~--S~tGnT~~vA-~~Ia~~l~~~--~~~~~~~~~~~-~----~~l~---~~d~vi~g~pt~~~G~~~~~~~~ 68 (169)
T PRK09267 2 AKIGIFFG--SDTGNTEDIA-KMIQKKLGKD--VADVVDIAKAS-K----EDFE---AYDLLILGIPTWGYGELQCDWDD 68 (169)
T ss_pred CeEEEEEE--CCCChHHHHH-HHHHHHhCCC--ceEEEEhhhCC-H----hhHh---hCCEEEEEecCcCCCCCCHHHHH
Confidence 57899994 5555665655 3566666432 44554433221 1 1222 367766552 45654433333
Q ss_pred HHcCCCCCCCCCccEEEeecC
Q 003866 356 LLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPaG 376 (790)
++..-........+++++-.|
T Consensus 69 fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 69 FLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred HHHHHhcCCCCCCEEEEEecC
Confidence 322100011225688888544
No 198
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.01 E-value=2.3e+02 Score=29.65 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=43.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCc-hHHHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGD-GTlnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+.++..+++.|+.+.+..+.. +....+..+.+.. ...|+||+.+.| +...+++..+... .+|+-++
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMAS-QGWDFIAVDPLGIGTLTEAVQKAIAR-------GIPVIDM 86 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHhHHHHHHHHHC-------CCcEEEe
Confidence 356677888898887776653 2223345555543 457999998766 5677888777654 4677666
No 199
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=28.00 E-value=1.8e+02 Score=31.45 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
..+++.||+||..-.. .... +.++...+..|+++..+......+.....+.+.. ..|+| .+..|+++..-...+
T Consensus 130 ~~k~igvl~~~~~~~~--~~~~-~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~--~~da~-~~~~~~~~~~~~~~i 203 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNS--VAQI-EQLRKAAKKLGIELVEIPVPSSEDLEQALEALAE--KVDAL-YLLPDNLVDSNFEAI 203 (294)
T ss_dssp T--EEEEEEETT-HHH--HHHH-HHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCT--T-SEE-EE-S-HHHHHTHHHH
T ss_pred CCCEEEEEecCCCccH--HHHH-HHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhc--cCCEE-EEECCcchHhHHHHH
Confidence 4589999999886422 2223 5677778888999888888888888777777642 35654 557889888766665
Q ss_pred Hc
Q 003866 357 LS 358 (790)
Q Consensus 357 ~~ 358 (790)
..
T Consensus 204 ~~ 205 (294)
T PF04392_consen 204 LQ 205 (294)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 200
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=27.86 E-value=1.1e+02 Score=28.84 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=30.3
Q ss_pred hHHHHHHHcCCeEEEEEeC----CchhH------HHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 301 IVEPIFKLAGFKLEVVKTT----SAGHA------KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 301 ~I~plL~~agi~~~v~~Te----~~~hA------~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
.+...|+..|+.+...... ....+ .++...+. ...+|.||++.||+=+-.+++.|..+
T Consensus 51 ~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~-~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 51 SFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAY-ENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG---GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhh-ccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 3456788889866554331 11111 22333332 12369999999999999999999866
No 201
>PRK05568 flavodoxin; Provisional
Probab=27.80 E-value=1.9e+02 Score=27.45 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeC--------chHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG--------DGIIN 350 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGG--------DGTln 350 (790)
++++||+-. +.|..+++. +.+...+...|++++++....... . ++. .+|.||++.. .+.+.
T Consensus 2 ~~~~IvY~S--~~GnT~~~a-~~i~~~~~~~g~~v~~~~~~~~~~-~----~~~---~~d~iilgsp~y~~~~~~~~~~~ 70 (142)
T PRK05568 2 KKINIIYWS--GTGNTEAMA-NLIAEGAKENGAEVKLLNVSEASV-D----DVK---GADVVALGSPAMGDEVLEEGEME 70 (142)
T ss_pred CeEEEEEEC--CCchHHHHH-HHHHHHHHHCCCeEEEEECCCCCH-H----HHH---hCCEEEEECCccCcccccchhHH
Confidence 568888854 555665666 466677888898888776554332 1 222 3687776642 25677
Q ss_pred HHHHHHH
Q 003866 351 EVLNGLL 357 (790)
Q Consensus 351 EVlNGL~ 357 (790)
.+++.+.
T Consensus 71 ~f~~~~~ 77 (142)
T PRK05568 71 PFVESIS 77 (142)
T ss_pred HHHHHhh
Confidence 7777664
No 202
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=27.72 E-value=99 Score=38.64 Aligned_cols=62 Identities=29% Similarity=0.322 Sum_probs=41.3
Q ss_pred hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhh
Q 003866 322 GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTV 385 (790)
Q Consensus 322 ~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsl 385 (790)
.+...+++.+.. .+.|.+|++|||||+.-+. .|.+..+.-....+|+-.||.==-||+.-+-
T Consensus 465 ~~~~~i~~~l~~-~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd 526 (762)
T cd00764 465 KDLETIAYNFQK-YGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVPGTD 526 (762)
T ss_pred HHHHHHHHHHHH-cCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCCCCc
Confidence 344555666654 3589999999999998664 3433111111246999999998899988543
No 203
>PRK14071 6-phosphofructokinase; Provisional
Probab=27.54 E-value=98 Score=35.21 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 325 ~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
.++++.+.. .+.|.+|++|||||+. .++.|.+. ..+++--||.==-||+..+
T Consensus 97 ~~~~~~l~~-~~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPkTIDNDl~~t 148 (360)
T PRK14071 97 QEIIDGYHS-LGLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPKTIDNDVGAT 148 (360)
T ss_pred HHHHHHHHH-cCCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecccccCCCcCc
Confidence 344455443 3479999999999986 45566542 1588999998778999754
No 204
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=27.51 E-value=58 Score=30.02 Aligned_cols=22 Identities=18% Similarity=0.661 Sum_probs=20.1
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.++|.|.+++.++++.|+++|.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~ 97 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQ 97 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999984
No 205
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=27.47 E-value=4.6e+02 Score=26.77 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=41.9
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 281 llVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
+.|++ |.....--..++ ..++..+++.|+.+.+..+++. ....++++.+.. ...|+||+++.+.. -.++..|...
T Consensus 2 i~vv~-p~~~~~~~~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~-~~~~~~l~~~ 77 (268)
T cd06273 2 IGAIV-PTLDNAIFARVI-QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLE-RGVDGLALIGLDHS-PALLDLLARR 77 (268)
T ss_pred eEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHHHHHhC
Confidence 44555 433332223333 4677788888987766544432 223345555543 34799999987653 3445555443
No 206
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.44 E-value=58 Score=28.06 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
+.+.|.++|.+++++|+++|.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~ 89 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALE 89 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 207
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=27.02 E-value=4.5e+02 Score=26.78 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=35.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
..++..+++.|+.+.+..+.. +....++.+.+.. ..+|+||+++.+.+ .+++..|..
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~-~~~~~~l~~ 76 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLA-KQVDGIIFMGGKIS-EEHREEFKR 76 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH-hcCCEEEEeCCCCc-HHHHHHHhc
Confidence 467778888898887776543 2223445555433 45899999876543 355665543
No 208
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=26.50 E-value=3.2e+02 Score=27.82 Aligned_cols=66 Identities=21% Similarity=0.175 Sum_probs=39.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+.+.+..+.. +....++.+++.. ..+|+||+++-+.. ..+++..+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~dgii~~~~~~~~~~~~l~~l~~~-------~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLIT-RGVDAIIINPTDSDAVVPAVKAANEA-------GIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHHHHHHHHHHHC-------CCcEEEE
Confidence 467778888898887665543 2223455555543 34799888765543 34566666543 4666555
No 209
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=26.42 E-value=61 Score=28.95 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.+++++|+++|+
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~ 94 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLI 94 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHH
Confidence 679999999999999999984
No 210
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.88 E-value=2e+02 Score=33.38 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=37.5
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
....+++.+.. .+.|.+|++|||||+.-+. .|.+.-. +...++++--||.==-||+.-+
T Consensus 91 ~~~~~~~~l~~-~~Id~LivIGGdgS~~~a~-~L~e~~~-~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 91 EYERLLEVFKA-HDIGYFFYNGGNDSMDTAL-KVSQLAK-KMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred HHHHHHHHHHH-cCCCEEEEECChHHHHHHH-HHHHHHH-HhCCCceEEEeeecccCCCCCC
Confidence 33445555543 3479999999999997653 3332100 0122488889998778999854
No 211
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=25.86 E-value=2.4e+02 Score=32.44 Aligned_cols=48 Identities=15% Similarity=0.323 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNL 327 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~el 327 (790)
.++++.|.|.++|-|+..-.. .+...|...|..+-++-.+.++.+..+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~--nLA~~LA~~G~rVLlIDlDpQ~~lt~~ 167 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSA--HLAQYLALQGYRVLAVDLDPQASLSAL 167 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHH--HHHHHHHhcCCceEEEcCCCCCCHHHH
Confidence 458999999999999975443 466788899999988888887766554
No 212
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=25.80 E-value=5.2e+02 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=36.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+.++..+++.|+.+.+..+.. +....+..+++.. ..+|+||+++.+.+ ..++..+..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~~dgii~~~~~~~-~~~~~~~~~ 76 (259)
T cd01542 19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLAR-QKVDGIILLATTIT-DEHREAIKK 76 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHHHHhc
Confidence 567778888998887766543 2222345555543 45899999987654 245555544
No 213
>PLN02564 6-phosphofructokinase
Probab=25.78 E-value=89 Score=37.03 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=38.4
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHH---HHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLN---GLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN---GL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+..++++.+.. .+.|.+|++|||||+.-+.. .+.++ +.++++.-||.==-||+.-+
T Consensus 164 ~~~~iv~~L~~-~~Id~LivIGGDGS~~gA~~L~e~~~~~-----g~~i~VIGIPKTIDNDI~~t 222 (484)
T PLN02564 164 DTSKIVDSIQD-RGINQVYIIGGDGTQKGASVIYEEIRRR-----GLKVAVAGIPKTIDNDIPVI 222 (484)
T ss_pred hHHHHHHHHHH-hCCCEEEEECCchHHHHHHHHHHHHHHc-----CCCceEEEecccccCCCcCc
Confidence 45566666654 35899999999999976532 22223 23566888898888998854
No 214
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.41 E-value=3.3e+02 Score=26.48 Aligned_cols=71 Identities=8% Similarity=0.021 Sum_probs=46.7
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 282 lVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
.++.|+.. .+.. +-.+.+..+|+.+|+++ +.........++++.+... ..|.|++++=|||-.+.+..+++
T Consensus 5 v~~a~~g~-D~Hd--~g~~iv~~~l~~~GfeV--i~lg~~~s~e~~v~aa~e~-~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 5 ILVAKMGQ-DGHD--RGAKVIATAYADLGFDV--DVGPLFQTPEEIARQAVEA-DVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred EEEEeeCC-CccH--HHHHHHHHHHHhCCcEE--EECCCCCCHHHHHHHHHHc-CCCEEEEcCchhhhHHHHHHHHH
Confidence 45666665 2322 22256788999999754 5555545566777766543 57999999999977766666654
No 215
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=25.26 E-value=2.7e+02 Score=29.55 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCCceEEEeCchH---------HHHHHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 336 CPDGIICVGGDGI---------INEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 336 ~~D~IVvvGGDGT---------lnEVlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
.||+|++.||=|. +.+++....+. ..+++.|=.|.
T Consensus 94 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~iaAIChgp 137 (231)
T cd03147 94 DYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-------GGVVAAVCHGP 137 (231)
T ss_pred hCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHH
Confidence 4899999999775 34555555443 35677765555
No 216
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=25.19 E-value=6.1e+02 Score=25.74 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
.+++.+|..... .+. ... +.++..++.+|+++.....- ...++...+.++... ..|.|++++.......++..
T Consensus 135 ~~~i~~v~~~~~-~~~--~~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~vi~~~~~~~~~~~~~~ 209 (298)
T cd06268 135 VKKVAIIYDDYA-YGR--GLA-AAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAA-GPDAVFLAGYGGDAALFLKQ 209 (298)
T ss_pred CCEEEEEEcCCc-hhH--HHH-HHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhc-CCCEEEEccccchHHHHHHH
Confidence 467888876543 222 223 46677888888765433222 224566666666433 46777777665777788888
Q ss_pred HHcC
Q 003866 356 LLSR 359 (790)
Q Consensus 356 L~~r 359 (790)
+...
T Consensus 210 ~~~~ 213 (298)
T cd06268 210 AREA 213 (298)
T ss_pred HHHc
Confidence 8765
No 217
>PRK05670 anthranilate synthase component II; Provisional
Probab=25.19 E-value=1.3e+02 Score=30.54 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=31.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHH
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnE 351 (790)
..+...|++.|++++++.....+ ..++ ..+ .+|+||+.||-|+.++
T Consensus 13 ~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~~----~~dglIlsgGpg~~~d 58 (189)
T PRK05670 13 YNLVQYLGELGAEVVVYRNDEIT-LEEI-EAL----NPDAIVLSPGPGTPAE 58 (189)
T ss_pred HHHHHHHHHCCCcEEEEECCCCC-HHHH-HhC----CCCEEEEcCCCCChHH
Confidence 45667899999998887654322 2222 222 2799999999999865
No 218
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=25.16 E-value=47 Score=40.66 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=46.8
Q ss_pred eeeeeecceeeeccc-------ccCCcceEEEEecCC-----cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCH
Q 003866 160 VNAKLTSKALVWGSH-------VLPLDDIVSVSYNNG-----LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (790)
Q Consensus 160 ~~~~~~~~~~~~~~~-------~l~l~dv~~~~~~~~-----~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~ 227 (790)
--.+||+.+|.|-+. .|+|++|-+|.--+. ..-|+|- | .. +++-|.+.|-
T Consensus 589 ryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~avEklee~sF~~knv~qVV-~--------------~d---rtly~Q~~n~ 650 (800)
T KOG2059|consen 589 RYFRLTTEELSYAKSPGKQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVV-H--------------TD---RTLYVQAKNC 650 (800)
T ss_pred eEEEeccceeEEecCCccCcccceeHHHHHHHHHhhhhccCCCceEEEE-e--------------cC---cceeEecCCc
Confidence 457999999999865 799999999872221 1223332 0 11 3788999999
Q ss_pred HHHHHHHhhhhcccc
Q 003866 228 EEAIQWVGGFADQQC 242 (790)
Q Consensus 228 ~~a~~W~~~~~~~~~ 242 (790)
.|+.+|.+++....|
T Consensus 651 vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 651 VEANDWLDALRKVSC 665 (800)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999976444
No 219
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=25.04 E-value=5.5e+02 Score=27.64 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+.+.||+ |.....-...++ +.++..+++.|+++.+..+... ..-.++.+.+.. ..+|+||+.+++-+- +.+..|.
T Consensus 60 ~~i~vi~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~-~~~~~l~ 135 (341)
T PRK10703 60 KSIGLLA-TSSEAPYFAEII-EAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQ-KRVDGLLVMCSEYPE-PLLAMLE 135 (341)
T ss_pred CeEEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCCH-HHHHHHH
Confidence 4455554 554433333344 4677788888988776655432 222344444433 458999998876432 4556554
Q ss_pred c-CCCCCCCCCccEEEeec
Q 003866 358 S-RGNQKEGISIPIGIIPA 375 (790)
Q Consensus 358 ~-r~d~~~~~~iPLGIIPa 375 (790)
. . ++|+-.+-.
T Consensus 136 ~~~-------~iPvV~~d~ 147 (341)
T PRK10703 136 EYR-------HIPMVVMDW 147 (341)
T ss_pred hcC-------CCCEEEEec
Confidence 3 2 467766633
No 220
>PLN02335 anthranilate synthase
Probab=24.94 E-value=2.4e+02 Score=29.68 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=41.4
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
...++++||-|--| |...+...|++.|++++++..+.. .+.++. . ..+|+||+.||-|..++.
T Consensus 16 ~~~~~ilviD~~ds--------ft~~i~~~L~~~g~~~~v~~~~~~-~~~~~~----~-~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 16 KQNGPIIVIDNYDS--------FTYNLCQYMGELGCHFEVYRNDEL-TVEELK----R-KNPRGVLISPGPGTPQDS 78 (222)
T ss_pred CccCcEEEEECCCC--------HHHHHHHHHHHCCCcEEEEECCCC-CHHHHH----h-cCCCEEEEcCCCCChhhc
Confidence 45678888866322 223466788999999888865322 233331 1 137999999999998764
No 221
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.91 E-value=89 Score=30.22 Aligned_cols=29 Identities=41% Similarity=0.465 Sum_probs=21.7
Q ss_pred eeeeeecceeeeccc--------ccCCcceEEEEecC
Q 003866 160 VNAKLTSKALVWGSH--------VLPLDDIVSVSYNN 188 (790)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~l~l~dv~~~~~~~ 188 (790)
-==||++|+|.-..+ .|+|.||..|....
T Consensus 19 hYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~ 55 (117)
T cd01239 19 HYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNN 55 (117)
T ss_pred eEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccC
Confidence 345788888877643 89999999998553
No 222
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=24.61 E-value=3.9e+02 Score=27.05 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI 348 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGT 348 (790)
+|++||=|=-+ -.+ .+..+|++.|++++++..... +. ..++ .+|+||+.||-|.
T Consensus 2 ~~iliid~~ds------f~~--~i~~~l~~~g~~~~v~~~~~~-~~----~~l~---~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDS------FTF--NLVDLIRKLGVPMQVVNVEDL-DL----DEVE---NFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCc------hHH--HHHHHHHHcCCcEEEEECCcc-Ch----hHhc---cCCEEEECCCCCC
Confidence 57888877322 122 367789999998888764321 11 2222 3799999999993
No 223
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=24.40 E-value=1.3e+02 Score=35.35 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=37.9
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
+..++++.+.. .+.|.++++|||||+.-+.. |.+.- ...+.++++--||.==-||+.-
T Consensus 160 ~~~~iv~~L~~-~~I~~L~vIGGdgT~~gA~~-l~ee~-~~~g~~I~VIGIPKTIDNDi~~ 217 (443)
T PRK06830 160 DPEEIVDTLER-MNINILFVIGGDGTLRGASA-IAEEI-ERRGLKISVIGIPKTIDNDINF 217 (443)
T ss_pred hHHHHHHHHHH-cCCCEEEEeCCchHHHHHHH-HHHHH-HHhCCCceEEEeccccCCCCcC
Confidence 34556666543 35799999999999976543 22200 0012358888899888899874
No 224
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=24.11 E-value=1.3e+02 Score=34.89 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 324 A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
...+++.+.. .+.|.+|++|||||+.-+. .|.+.-. +....+++--||.==-||+.-+
T Consensus 101 ~~~~~~~L~~-~~Id~Li~IGGdgS~~~a~-~L~~~~~-~~g~~i~vvgIPkTIDNDl~~t 158 (403)
T PRK06555 101 LKVAAERLAA-DGVDILHTIGGDDTNTTAA-DLAAYLA-ENGYDLTVVGLPKTIDNDVVPI 158 (403)
T ss_pred HHHHHHHHHH-cCCCEEEEECChhHHHHHH-HHHHHHH-HhCCCceEEEeeeeeeCCCCCc
Confidence 3445555543 3479999999999997653 3322000 0122589999999888998744
No 225
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.09 E-value=5.8e+02 Score=25.86 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchH
Q 003866 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGI 348 (790)
Q Consensus 281 llVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGT 348 (790)
+.||+ |....---..+. ..++..+++.|+++.++.+..... ..++.+.+.. ..+|+||+.+++-+
T Consensus 2 i~~v~-~~~~~~~~~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~ 67 (267)
T cd06284 2 ILVLV-PDIANPFFSEIL-KGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRR-KQADGIILLDGSLP 67 (267)
T ss_pred EEEEE-CCCCCccHHHHH-HHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 34455 444332222333 577888999998887665543221 2344444432 35799999887643
No 226
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=23.58 E-value=3.4e+02 Score=31.68 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=56.8
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCC
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~ 360 (790)
||+-|..-.-.....+.+.++..|.++|+.-.++ .+.. ++ +...+......|.|...|+-.|-..|......+
T Consensus 164 VIlKps~~~p~~~~~l~~~~~~al~~~glP~gvv~~v~g~-~~---~~~~L~~~~~vd~v~fTGs~~~g~~i~~~aa~~- 238 (478)
T cd07086 164 VVWKPSETTPLTAIAVTKILAEVLEKNGLPPGVVNLVTGG-GD---GGELLVHDPRVPLVSFTGSTEVGRRVGETVARR- 238 (478)
T ss_pred EEEECCCcchHHHHHHHHHHHHhhhccCCCccceEEEecC-ch---hHHHHhcCCCCCEEEEECcHHHHHHHHHHHhcc-
Confidence 5555554433332223234444444447752222 2221 11 222222223468888889888888887766543
Q ss_pred CCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 361 NQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 361 d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
..--++=+| ||+-+- +..--|...|+..|+.+..
T Consensus 239 -------~~~~~lElG-G~~p~i-V~~dAdl~~Aa~~i~~~~~ 272 (478)
T cd07086 239 -------FGRVLLELG-GNNAII-VMDDADLDLAVRAVLFAAV 272 (478)
T ss_pred -------CCcEEeecC-CCCcEE-EcCCCCHHHHHHHHHHHHH
Confidence 122355566 777653 2333578888888887653
No 227
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=23.54 E-value=2.9e+02 Score=26.21 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCchhhHHHhHHHHHHHcCCeEEEEEe---CCchhHHHHHHHhhhcCCCCceEE
Q 003866 292 GRSSKVFHDIVEPIFKLAGFKLEVVKT---TSAGHAKNLASTVDISSCPDGIIC 342 (790)
Q Consensus 292 G~a~kv~~~~I~plL~~agi~~~v~~T---e~~~hA~ela~~~~~~~~~D~IVv 342 (790)
..+...|.+......+..|+.++++.. ....+..+..+++......++|++
T Consensus 40 d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 40 DPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp -HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred ChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 345567777788899999999988776 334444555566655555677765
No 228
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=23.51 E-value=78 Score=34.69 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=35.9
Q ss_pred HHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 327 LASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 327 la~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+++.+.. ...|.+|++|||||+..+ +.|.+. ..+++-.||.=--||+..+
T Consensus 84 ~~~~l~~-~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~gt 133 (282)
T PF00365_consen 84 IVENLKK-LGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPGT 133 (282)
T ss_dssp HHHHHHH-TTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTTS
T ss_pred HHHHHHH-hCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCCC
Confidence 3444433 247999999999998775 556532 1489999999778998854
No 229
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=23.19 E-value=74 Score=29.05 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++.+.|+++|.
T Consensus 75 rt~~~~A~s~~e~~~Wi~ai~ 95 (100)
T cd01233 75 RGYLFQALSDKEMIDWLYALN 95 (100)
T ss_pred CEEEEEcCCHHHHHHHHHHhh
Confidence 569999999999999999983
No 230
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.83 E-value=2e+02 Score=31.06 Aligned_cols=27 Identities=22% Similarity=0.012 Sum_probs=22.1
Q ss_pred CCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 337 PDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 337 ~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.|.+|+.|| +|+.|++.. .+|.-++|.
T Consensus 242 aDl~Is~~G-~T~~E~~a~-----------g~P~i~i~~ 268 (279)
T TIGR03590 242 ADLAIGAAG-STSWERCCL-----------GLPSLAICL 268 (279)
T ss_pred CCEEEECCc-hHHHHHHHc-----------CCCEEEEEe
Confidence 489999999 999998743 578888876
No 231
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=22.71 E-value=1.5e+02 Score=34.29 Aligned_cols=94 Identities=21% Similarity=0.333 Sum_probs=69.4
Q ss_pred HHhHHHHHHHcCCe---EEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 299 HDIVEPIFKLAGFK---LEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 299 ~~~I~plL~~agi~---~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.+.|+..|..+++. +.++.++......++.+ + .++.|.||==||-|.+..|.+. ..+=+|-.
T Consensus 159 ~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l--~~yiD~iIPRGg~~Li~~v~~~------------a~vPVi~~ 223 (417)
T COG0014 159 VEVIQEALEKAGLPADAVQLIEDTDREEVLELLR-L--DGYIDLVIPRGGAGLIRRVVEN------------ATVPVIEH 223 (417)
T ss_pred HHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHh-h--cCceeEEEcCCcHHHHHHHHhC------------CcCCEEec
Confidence 35778888888863 67777777777788877 3 2467999999999999988763 22336788
Q ss_pred CCcchhhhhhcCCCChHHHHHHHHhCceeEEeE
Q 003866 376 GSDNSLVWTVLGVRDPVSAALAIVKGGLTATDV 408 (790)
Q Consensus 376 GTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDl 408 (790)
|.||+-.. +-.-.|+..|...++++++++-++
T Consensus 224 ~~G~CHiy-vd~~ADld~A~~ii~nAKtqrPs~ 255 (417)
T COG0014 224 GVGNCHIY-VDESADLDKALKIIVNAKTQRPSV 255 (417)
T ss_pred CcceEEEE-ecccCCHHHHHHHHHcccCCCCcc
Confidence 88888653 223468889999999988775544
No 232
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=22.66 E-value=4.6e+02 Score=28.04 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=41.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhH--HHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHA--KNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA--~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+.++..++..|+.+.+..+.. +.+ .++.+.+.. ..+|+||+++-|.. +..++..+.+. .+|+.++
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~-~~~~q~~~i~~l~~-~~vDgIIi~~~~~~~~~~~l~~~~~~-------~iPvV~~ 85 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANG-NEAKQISQIENLIA-RGVDVLVIIPQNGQVLSNAVQEAKDE-------GIKVVAY 85 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCC-CHHHHHHHHHHHHH-cCCCEEEEeCCChhHHHHHHHHHHHC-------CCeEEEe
Confidence 456777888888776554432 222 234444433 45899999998865 46777777654 4677666
No 233
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=22.61 E-value=2.7e+02 Score=30.85 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------chhHHHHHHHhh-----hcCCCCceEEE-eCchH
Q 003866 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AGHAKNLASTVD-----ISSCPDGIICV-GGDGI 348 (790)
Q Consensus 281 llVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~------~~hA~ela~~~~-----~~~~~D~IVvv-GGDGT 348 (790)
..-||.|.++.. ....++ .....|+..|+++.+-..-. ++..++-++++. .+. .++|+++ ||+|+
T Consensus 3 ~I~viAPSs~~~-~~~~~~-~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~ 79 (305)
T PRK11253 3 LFHLIAPSGYPI-DQAAAL-RGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGA 79 (305)
T ss_pred eEEEEeCCCCCC-CHHHHH-HHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCH
Confidence 346788998753 334453 44557888898765443311 333344444432 122 5666555 99997
Q ss_pred HH
Q 003866 349 IN 350 (790)
Q Consensus 349 ln 350 (790)
..
T Consensus 80 ~r 81 (305)
T PRK11253 80 SR 81 (305)
T ss_pred hH
Confidence 54
No 234
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=22.58 E-value=7.8e+02 Score=26.08 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=44.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
..+++.+|..+. ..+ .... +.++..+++.|+++... ......+....+.++.. ..+|+|++.+.+...-.++.
T Consensus 132 g~~~vail~~~~-~~~--~~~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~pdaIi~~~~~~~~~~~~~ 206 (312)
T cd06333 132 GVKTVAFIGFSD-AYG--ESGL-KELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRA-ARPDAVLIWGSGTPAALPAK 206 (312)
T ss_pred CCCEEEEEecCc-HHH--HHHH-HHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHh-CCCCEEEEecCCcHHHHHHH
Confidence 347788876543 222 2233 45677888889876432 11112233344444422 34788888776655667888
Q ss_pred HHHcC
Q 003866 355 GLLSR 359 (790)
Q Consensus 355 GL~~r 359 (790)
.+.+.
T Consensus 207 ~l~~~ 211 (312)
T cd06333 207 NLRER 211 (312)
T ss_pred HHHHc
Confidence 88765
No 235
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.52 E-value=4.6e+02 Score=27.06 Aligned_cols=69 Identities=7% Similarity=0.034 Sum_probs=39.7
Q ss_pred HhHHHHHHHc-----CCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEE
Q 003866 300 DIVEPIFKLA-----GFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGI 372 (790)
Q Consensus 300 ~~I~plL~~a-----gi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGI 372 (790)
+.++..+++. |+.+.+..+.... ...++.+.+.. ..+|+||+.+.|.+ +.++++.+.+. .+|+-.
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vDgiii~~~~~~~~~~~i~~~~~~-------gIpvV~ 90 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLIN-RKIDALVILPFESAPLTQPVAKAKKA-------GIFVVV 90 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCchhhHHHHHHHHHC-------CCeEEE
Confidence 4566666665 4555444333222 22334444432 35799999998865 56777776554 477777
Q ss_pred eecC
Q 003866 373 IPAG 376 (790)
Q Consensus 373 IPaG 376 (790)
+-.+
T Consensus 91 ~d~~ 94 (274)
T cd06311 91 VDRG 94 (274)
T ss_pred EcCC
Confidence 6544
No 236
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.27 E-value=4.1e+02 Score=28.47 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
.+.||+...+..-- .+++ .-++..+++.|+.+-+..|.+..+..+..+.+.. ...|+||+++-... .+-+..+...
T Consensus 3 ~IGvivp~~~npff-~~ii-~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~-~~vDGiI~~s~~~~-~~~l~~~~~~ 78 (279)
T PF00532_consen 3 TIGVIVPDISNPFF-AEII-RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQ-RRVDGIILASSEND-DEELRRLIKS 78 (279)
T ss_dssp EEEEEESSSTSHHH-HHHH-HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH-TTSSEEEEESSSCT-CHHHHHHHHT
T ss_pred EEEEEECCCCCcHH-HHHH-HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHh-cCCCEEEEecccCC-hHHHHHHHHc
Confidence 46666655533222 2444 4678889999999888888877776666666643 45899999977766 5666666654
Q ss_pred CCCCCCCCccEEEeecC
Q 003866 360 GNQKEGISIPIGIIPAG 376 (790)
Q Consensus 360 ~d~~~~~~iPLGIIPaG 376 (790)
.+|+-++=.-
T Consensus 79 -------~iPvV~~~~~ 88 (279)
T PF00532_consen 79 -------GIPVVLIDRY 88 (279)
T ss_dssp -------TSEEEEESS-
T ss_pred -------CCCEEEEEec
Confidence 3676555443
No 237
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=22.24 E-value=3.8e+02 Score=30.56 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCC
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQ 362 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~ 362 (790)
||+-|....-... . ..+..+|.++|+.-.++..-. +...++...+......|.|+..|+..+...|.......
T Consensus 129 Vi~Kps~~~p~~~--~-~~l~~~l~~aGlP~gvv~~v~-g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~~--- 201 (431)
T cd07104 129 VVLKPDSRTPVTG--G-LLIAEIFEEAGLPKGVLNVVP-GGGSEIGDALVEHPRVRMISFTGSTAVGRHIGELAGRH--- 201 (431)
T ss_pred EEeeCCCCChHHH--H-HHHHHHHHHcCCCcccEEEee-CCchhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhhc---
Confidence 5566665432211 1 235668888887532221111 11112333332223478999999999988887766543
Q ss_pred CCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCc
Q 003866 363 KEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (790)
Q Consensus 363 ~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~ 402 (790)
..--++-+| ||+-+- +..-.|+..|+..|+.+.
T Consensus 202 -----~~~~~lelg-G~~~~i-V~~dadl~~aa~~i~~~~ 234 (431)
T cd07104 202 -----LKKVALELG-GNNPLI-VLDDADLDLAVSAAAFGA 234 (431)
T ss_pred -----CCcEEEEcC-CCCeEE-ECCCCCHHHHHHHHHHHH
Confidence 222244456 777653 233357888888887654
No 238
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=22.23 E-value=5.6e+02 Score=28.09 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNG 355 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNG 355 (790)
..++.|++ |.-..--...+. +-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+.+.+.. +.+.++.
T Consensus 25 ~~~Ig~i~-~~~~~~f~~~~~-~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~-~~vDGiIi~~~~~~~~~~~l~~ 101 (330)
T PRK10355 25 EVKIGMAI-DDLRLERWQKDR-DIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred CceEEEEe-cCCCchHHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhHHHHHHH
Confidence 34555555 433322222333 4567788888988877665432 223344555533 45899999987754 4567777
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
+... .+|+-++
T Consensus 102 ~~~~-------~iPvV~i 112 (330)
T PRK10355 102 AKQE-------GIKVLAY 112 (330)
T ss_pred HHHC-------CCeEEEE
Confidence 6554 4677666
No 239
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=22.02 E-value=2.3e+02 Score=28.36 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=30.5
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHH
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnE 351 (790)
..+...|++.|++++++....... ++ .++ ..+|+||+.||.|+..+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~--~~-~~~---~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITL--EE-LEL---LNPDAIVISPGPGHPED 57 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCH--HH-Hhh---cCCCEEEECCCCCCccc
Confidence 345678889999888776543322 11 122 24799999999998654
No 240
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=21.97 E-value=4.1e+02 Score=30.51 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=58.9
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCC
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~ 360 (790)
||+-|..-.-... ..+..+|.++|+.-.++ .+... .++.+.+......|.|+..|+-.+-..+.....+.
T Consensus 148 VIlKps~~~~~~~----~~l~~~l~~aglP~g~v~~v~~~~---~~~~~~l~~~~~vd~V~ftGs~~~g~~v~~~aa~~- 219 (451)
T cd07103 148 VVLKPAEETPLSA----LALAELAEEAGLPAGVLNVVTGSP---AEIGEALCASPRVRKISFTGSTAVGKLLMAQAADT- 219 (451)
T ss_pred EEEECCccCcHHH----HHHHHHHHHcCCCcccEEEEecCc---hhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhc-
Confidence 5666654332222 24556788887753322 22211 12333332223468899999888888877776543
Q ss_pred CCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCc
Q 003866 361 NQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (790)
Q Consensus 361 d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~ 402 (790)
..-.++-+| ||+.+- +..--|+..|+..|+.|.
T Consensus 220 -------~~~~~lelg-G~~~~i-V~~dadl~~aa~~i~~~~ 252 (451)
T cd07103 220 -------VKRVSLELG-GNAPFI-VFDDADLDKAVDGAIASK 252 (451)
T ss_pred -------CCcEEEECC-CCCeEE-ECCCCCHHHHHHHHHHHH
Confidence 122345556 777763 344468888888888764
No 241
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=21.94 E-value=4.8e+02 Score=27.67 Aligned_cols=56 Identities=18% Similarity=0.037 Sum_probs=33.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCC---chhHHHHHHHhhhcCCCCceEEEeCchHH-HHHHHHH
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPDGIICVGGDGII-NEVLNGL 356 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~---~~hA~ela~~~~~~~~~D~IVvvGGDGTl-nEVlNGL 356 (790)
..++..+++.|+.+.+..+.. .....++.+.+. ...+|+||+.+.|... .+.+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~-~~~vDgiIi~~~~~~~~~~~l~~~ 78 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCK-SWGADAILLGTVSPEALNHDLAQL 78 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEecCChhhhhHHHHHH
Confidence 356677888888887765542 223334555543 3458999998876432 3555544
No 242
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.93 E-value=1.3e+02 Score=30.80 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=31.7
Q ss_pred hhHHHHHHHhhhcCCCCceEEE-eC-chHHHHHHHHHHcCCCCCCCCCccEEEeecC
Q 003866 322 GHAKNLASTVDISSCPDGIICV-GG-DGIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 322 ~hA~ela~~~~~~~~~D~IVvv-GG-DGTlnEVlNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
..|+++.+.++.. +..++. || .|..-.+..+..... ...+||+|..
T Consensus 19 ~~A~~lG~~la~~---g~~lV~GGg~~GlM~a~a~ga~~~g------G~viGi~p~~ 66 (178)
T TIGR00730 19 ELAAELGAYLAGQ---GWGLVYGGGRVGLMGAIADAAMENG------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHC---CCEEEECCChHhHHHHHHHHHHhcC------CeEEEecchh
Confidence 3566777777642 444444 55 799899999987653 4679999965
No 243
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.91 E-value=84 Score=28.50 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++.++|+++|.
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~ 91 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQ 91 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 244
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=21.67 E-value=3.6e+02 Score=31.48 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=63.7
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCe---EEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFK---LEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~---~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
||+-|..-.-.....+.+.+..+|.++|+. +.++ +.... ....+......|.|..-|+-.|-..|......+
T Consensus 163 VvlKps~~~p~~~~~l~~l~~~~~~~aglP~gv~~~v-~g~~~----~~~~L~~~~~vd~V~fTGs~~~g~~i~~~aa~~ 237 (474)
T cd07130 163 VVWKPSPTTPLTAIAVTKIVARVLEKNGLPGAIASLV-CGGAD----VGEALVKDPRVPLVSFTGSTAVGRQVGQAVAAR 237 (474)
T ss_pred EEeeCCccCHHHHHHHHHHHHHHHHhcCCCCCcEEEE-eCChh----HHHHHhcCCCCCEEEEECchHHHHHHHHHHHhc
Confidence 677777654444334444566678888875 3333 32211 233333334578999999999999998776554
Q ss_pred CCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCc
Q 003866 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (790)
Q Consensus 360 ~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~ 402 (790)
- .++ ++=+| ||+-+- ++.-.|+..|+..|+.+.
T Consensus 238 ~-------~~~-~lElG-Gk~p~i-V~~dadl~~Aa~~i~~~~ 270 (474)
T cd07130 238 F-------GRS-LLELG-GNNAII-VMEDADLDLAVRAVLFAA 270 (474)
T ss_pred C-------CCE-EEEcC-CCCeEE-ECCCCCHHHHHHHHHHHH
Confidence 1 122 35567 777663 333457888888888765
No 245
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=21.60 E-value=2.3e+02 Score=26.93 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch----hHHHHHHH--hhh--cCCCCceEEEeCchHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG----HAKNLAST--VDI--SSCPDGIICVGGDGII 349 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~----hA~ela~~--~~~--~~~~D~IVvvGGDGTl 349 (790)
+|+.|++.|.. ....+ ..+...|+.+++++.++-.+... +...+..+ ++. ...+|.|++.||.+..
T Consensus 2 ~~v~ill~~g~---~~~e~--~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILVADGV---DAAEL--SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA 75 (142)
T ss_pred CEEEEEEcCCc---CHHHH--HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH
Confidence 56888887733 22232 24566888999888776543210 00001111 111 1137999999998764
No 246
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=21.56 E-value=79 Score=35.89 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCCCCc--hhhHHHhHHHHHHHcCCeEEEEEeCCch------hHHHHHHHhhhcCCCCceEEEeCchHH
Q 003866 278 PPKMLVILNPRSGRGRS--SKVFHDIVEPIFKLAGFKLEVVKTTSAG------HAKNLASTVDISSCPDGIICVGGDGII 349 (790)
Q Consensus 278 pkrllVIINP~SGkG~a--~kv~~~~I~plL~~agi~~~v~~Te~~~------hA~ela~~~~~~~~~D~IVvvGGDGTl 349 (790)
-.+++-|+|-..|--.. .++-...+..++..-|. +..|.+.. .....++.+.. .+.|.+|++|||||.
T Consensus 32 g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT---~lgssR~~~~~~~e~~~~~~~~l~~-~gId~LvvIGGDgS~ 107 (347)
T COG0205 32 GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT---FLGSARFPEFKTEEGRKVAAENLKK-LGIDALVVIGGDGSY 107 (347)
T ss_pred CCEEEEEecchhhhcCCcceeccccchhHHHhcCCe---EEeeCCCCCcccHHHHHHHHHHHHH-cCCCEEEEECCCChH
Confidence 34566666665554333 11111344555555552 22222221 22233444433 357999999999998
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
.-.. -|.+.. .+++-=||.==-||+..+
T Consensus 108 ~gA~-~Lae~~------~i~vVGvPkTIDNDi~~t 135 (347)
T COG0205 108 TGAA-LLAEEG------GIPVVGVPKTIDNDISGT 135 (347)
T ss_pred HHHH-HHHHhc------CCcEEecCCCccCCCccc
Confidence 7643 343331 377777888778998854
No 247
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.52 E-value=6.4e+02 Score=27.50 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=48.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcC-CeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAG-FKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEV 352 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~ag-i~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEV 352 (790)
...+.+.|++.-.+. .-..+++ .-++..+++.| +.+.+..+.. .....+..+.+.. ..+|+||+++.|.. ..++
T Consensus 22 ~~~~~Igvv~~~~~~-~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 98 (330)
T PRK15395 22 AADTRIGVTIYKYDD-NFMSVVR-KAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAPTV 98 (330)
T ss_pred cCCceEEEEEecCcc-hHHHHHH-HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHHH
Confidence 456778887753322 1122333 45666777765 3443333322 2222334455433 35899999988865 5556
Q ss_pred HHHHHcCCCCCCCCCccEEEee
Q 003866 353 LNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIP 374 (790)
+..+... .+|+-++-
T Consensus 99 l~~l~~~-------giPvV~vd 113 (330)
T PRK15395 99 IEKARGQ-------DVPVVFFN 113 (330)
T ss_pred HHHHHHC-------CCcEEEEc
Confidence 6766554 47776663
No 248
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.35 E-value=6.3e+02 Score=25.62 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=40.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
..++..+++.|+.+.++.++.. ....++.+.+.. ..+|+||+.+.|..- +.++.+... .+|+-.+-
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~dgiii~~~~~~~-~~l~~~~~~-------~ipvV~~~ 85 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLA-YQVDGLIVNPTGNNK-ELYQRLAKN-------GKPVVLVD 85 (267)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCcCEEEEeCCCCCh-HHHHHHhcC-------CCCEEEEc
Confidence 5677788888988876655432 222334455433 357999999887643 335555432 46666653
No 249
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.32 E-value=4.9e+02 Score=26.55 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=51.9
Q ss_pred EEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhH--HHHHHHhhhcCCCCceEEEeCch-HHHHHHHHHHcCC
Q 003866 284 ILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA--KNLASTVDISSCPDGIICVGGDG-IINEVLNGLLSRG 360 (790)
Q Consensus 284 IINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA--~ela~~~~~~~~~D~IVvvGGDG-TlnEVlNGL~~r~ 360 (790)
|+.|..+.. -...+.+-++..+++.|+++.+......+.. .+.++++.. .++|+||+..-|. .+.++++.+...
T Consensus 3 vi~~~~~~~-~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~-~~~d~Iiv~~~~~~~~~~~l~~~~~~- 79 (257)
T PF13407_consen 3 VIVPSMDNP-FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAIS-QGVDGIIVSPVDPDSLAPFLEKAKAA- 79 (257)
T ss_dssp EEESSSSSH-HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHH-TTESEEEEESSSTTTTHHHHHHHHHT-
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH-hcCCEEEecCCCHHHHHHHHHHHhhc-
Confidence 455555543 2233335677888888998887522232222 233444433 4589999998886 467888888765
Q ss_pred CCCCCCCccEEEeecC
Q 003866 361 NQKEGISIPIGIIPAG 376 (790)
Q Consensus 361 d~~~~~~iPLGIIPaG 376 (790)
++|+-.+=.+
T Consensus 80 ------gIpvv~~d~~ 89 (257)
T PF13407_consen 80 ------GIPVVTVDSD 89 (257)
T ss_dssp ------TSEEEEESST
T ss_pred ------CceEEEEecc
Confidence 4777776444
No 250
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.23 E-value=4.9e+02 Score=26.63 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=41.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
+.++..+++.|+++.+..+.. .....++.+.+.. ..+|+||+.+-|.. +.+.++.+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~ 86 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFIT-KKVDAIVLSPVDSKGIRAAIAKAKKA-------GIPVITV 86 (267)
T ss_pred HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEE
Confidence 567778888898877665543 2233455555543 35899999887654 35566666443 4666665
No 251
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.13 E-value=6.1e+02 Score=26.47 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=40.8
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
..++..+++.|+++.++.+.. + .+..+.+.. ..+|+||+.+-+.+- ++++.+... .+|+-.+-
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~-~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~ 86 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS--E-DSDSALVVS-ALVDGFIVYGVPRDD-PLVAALLRR-------GLPVVVVD 86 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc--H-HHHHHHHHh-cCCCEEEEeCCCCCh-HHHHHHHHc-------CCCEEEEe
Confidence 467788899999888776654 2 233334332 358999999877653 556666443 46766663
No 252
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=20.89 E-value=2.4e+02 Score=30.22 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
.+++.+| |.|+.-...+.|.++.+.+|+..|+.+.-.. -...+..++.+.+.. .|.|+ |||=-|++- +..|.
T Consensus 32 ~~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~-l~~~~~~~Ie~~l~~---~d~Iy-VgGGNTF~L-L~~lk 103 (224)
T COG3340 32 RKTIAFI--PTASVDSEDDFYVEKVRNALAKLGLEVSELH-LSKPPLAAIENKLMK---ADIIY-VGGGNTFNL-LQELK 103 (224)
T ss_pred CceEEEE--ecCccccchHHHHHHHHHHHHHcCCeeeeee-ccCCCHHHHHHhhhh---ccEEE-ECCchHHHH-HHHHH
Confidence 3455544 8888777777788899999999998764332 223344555555532 35555 555556653 34443
Q ss_pred c
Q 003866 358 S 358 (790)
Q Consensus 358 ~ 358 (790)
+
T Consensus 104 e 104 (224)
T COG3340 104 E 104 (224)
T ss_pred H
Confidence 3
No 253
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=20.81 E-value=6.1e+02 Score=25.74 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
.+++.||..... .+. ... +.++..+++.|+++..... ....+...+++++... .+|+|++++.+.....+++.
T Consensus 136 ~~~v~iv~~~~~-~~~--~~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~ 210 (299)
T cd04509 136 WKKVAILYDDDS-YGR--GLL-EAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAA-KPDVIVLCGSGEDAATILKQ 210 (299)
T ss_pred CcEEEEEecCch-HHH--HHH-HHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc-CCCEEEEcccchHHHHHHHH
Confidence 457777765544 222 222 4667788888877643322 2224556666666432 36777777666888889888
Q ss_pred HHcC
Q 003866 356 LLSR 359 (790)
Q Consensus 356 L~~r 359 (790)
+...
T Consensus 211 ~~~~ 214 (299)
T cd04509 211 AAEA 214 (299)
T ss_pred HHHc
Confidence 8765
No 254
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.53 E-value=2.7e+02 Score=26.22 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=38.9
Q ss_pred eeeecceeeeccc-----------ccCCcceEEEEecCC---cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCH
Q 003866 162 AKLTSKALVWGSH-----------VLPLDDIVSVSYNNG---LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (790)
Q Consensus 162 ~~~~~~~~~~~~~-----------~l~l~dv~~~~~~~~---~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~ 227 (790)
.=|=++.|++++. .++|++|--+....+ ..-|.|++ ..+.|.+.++|.
T Consensus 23 ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~------------------~~kSf~v~A~s~ 84 (104)
T cd01218 23 FFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKT------------------PTKSFAVYAATE 84 (104)
T ss_pred EEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEec------------------CCeEEEEEcCCH
Confidence 5566778888753 456766643333222 12355543 235799999999
Q ss_pred HHHHHHHhhhh
Q 003866 228 EEAIQWVGGFA 238 (790)
Q Consensus 228 ~~a~~W~~~~~ 238 (790)
+|-.+|...|.
T Consensus 85 ~eK~eWl~~i~ 95 (104)
T cd01218 85 TEKREWMLHIN 95 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 255
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=20.50 E-value=3.9e+02 Score=29.07 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeC
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG 345 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGG 345 (790)
.+|+.||+-|-+..- .. +..+|+++|+++.++....... ....+ ..+|+||+.||
T Consensus 3 ~~kvaVl~~pG~n~d--~e-----~~~Al~~aG~~v~~v~~~~~~~---~~~~l---~~~DgLvipGG 57 (261)
T PRK01175 3 SIRVAVLRMEGTNCE--DE-----TVKAFRRLGVEPEYVHINDLAA---ERKSV---SDYDCLVIPGG 57 (261)
T ss_pred CCEEEEEeCCCCCCH--HH-----HHHHHHHCCCcEEEEeeccccc---cccch---hhCCEEEECCC
Confidence 368999998855422 12 2357888999887766543211 11112 24899999999
No 256
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.40 E-value=96 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
+.+.|.++|.+++.+|..+|.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~ 94 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQ 94 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHh
Confidence 789999999999999999984
No 257
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=20.38 E-value=1e+02 Score=25.61 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.8
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.+.+.|.++|.++++.|.++|.
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~ 97 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQ 97 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHh
Confidence 5789999999999999999984
No 258
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=20.32 E-value=3.3e+02 Score=27.06 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCC---eEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe----CchHH--
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGF---KLEVVKTTSAGHAKNLASTVDISSCPDGIICVG----GDGII-- 349 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi---~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG----GDGTl-- 349 (790)
.|+.|+.--.-.. -..+.. +.....|...|+ .++++.....-+.--.++.+...+.||+||+.| |+-.-
T Consensus 4 ~ri~IV~s~~n~~-i~~~ll-~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~ 81 (144)
T PF00885_consen 4 LRIAIVVSRFNEE-ITDRLL-EGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFE 81 (144)
T ss_dssp EEEEEEEESTTHH-HHHHHH-HHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHH
T ss_pred CEEEEEEEeccHH-HHHHHH-HHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHH
Confidence 4666766544321 112233 344557788888 788888888888777777776666699999999 44433
Q ss_pred ---HHHHHHHHc
Q 003866 350 ---NEVLNGLLS 358 (790)
Q Consensus 350 ---nEVlNGL~~ 358 (790)
+++.+||++
T Consensus 82 ~v~~~v~~gl~~ 93 (144)
T PF00885_consen 82 YVANAVSRGLMD 93 (144)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445566654
No 259
>CHL00101 trpG anthranilate synthase component 2
Probab=20.29 E-value=2.7e+02 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=30.6
Q ss_pred hHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHH
Q 003866 301 IVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (790)
Q Consensus 301 ~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnE 351 (790)
.+...|++.|+++.++..... .+.++ .. ..+|+||+.||.|.+.+
T Consensus 14 ~l~~~l~~~g~~~~v~~~~~~-~~~~~----~~-~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 14 NLVQSLGELNSDVLVCRNDEI-DLSKI----KN-LNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHHHHHHhcCCCEEEEECCCC-CHHHH----hh-CCCCEEEECCCCCChHH
Confidence 466788889988877664432 22222 11 13799999999999876
No 260
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=20.28 E-value=8.4e+02 Score=26.00 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCc
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGD 346 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGD 346 (790)
+...+.|++ |.-...-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l~-~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~ 125 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAELA-RGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLS-KQVDGIIFMGGT 125 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence 445566666 432221122333 4566778888887766554332 222344444432 458999998754
No 261
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=20.28 E-value=5.4e+02 Score=29.08 Aligned_cols=81 Identities=15% Similarity=0.333 Sum_probs=45.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CchhHHHHHHHhhhcCCC---CceEEEeCchHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCP---DGIICVGGDGIINE 351 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te----~~~hA~ela~~~~~~~~~---D~IVvvGGDGTlnE 351 (790)
+|++||..+.-.+ .+.+.+...|. ++.+.++.-. .-..+.++++.+... +. |.||++|| |.+-.
T Consensus 20 ~r~lIVtD~~v~~-----l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~-~~~r~d~iIaiGG-Gsv~D 90 (346)
T cd08196 20 ENDVFIVDANVAE-----LYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQN-GARRNTHLVAIGG-GIIQD 90 (346)
T ss_pred CeEEEEECccHHH-----HHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCCcEEEEECC-hHHHH
Confidence 6888998875532 24356666665 4455444311 123344444444322 23 78888887 67766
Q ss_pred HHHHHH---cCCCCCCCCCccEEEeec
Q 003866 352 VLNGLL---SRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 352 VlNGL~---~r~d~~~~~~iPLGIIPa 375 (790)
++-.+. .+ .+|+-.||.
T Consensus 91 ~ak~vA~~~~r-------gi~~i~iPT 110 (346)
T cd08196 91 VTTFVASIYMR-------GVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHHc-------CCCeEEecc
Confidence 666553 33 367777775
No 262
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=20.13 E-value=1.8e+02 Score=28.98 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe----CCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT----TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 283 VIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T----e~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+|-+-++|- .+++.|...|+..|+++.-+-+ ++++-+..+++ .+..
T Consensus 4 ~IgsDh~G~-----~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~-------------------------~V~~ 53 (141)
T TIGR01118 4 IIGSDLAGK-----RLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVAS-------------------------EVQK 53 (141)
T ss_pred EEEeCcchH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHH-------------------------HHHc
Confidence 455556552 2446788899999987654433 23333333333 3322
Q ss_pred CCCCCCCCCccEEEeecCCcchhhhh
Q 003866 359 RGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 359 r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
. +...||+=+|||.+++-.
T Consensus 54 ~-------e~~~GIliCGtGiG~sia 72 (141)
T TIGR01118 54 D-------EQNLGIVIDAYGAGSFMV 72 (141)
T ss_pred C-------CCceEEEEcCCCHhHhhh
Confidence 2 356899999999998743
No 263
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=20.06 E-value=4e+02 Score=25.07 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhH--HHHHH--HhhhcCCCCceEEEeCchHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA--KNLAS--TVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA--~ela~--~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
..+++.+|. +..+.......+ +-.+..++++|+++........... ..... .+... .+|+|+ ++.|.+...+
T Consensus 8 G~r~i~~i~-~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii-~~~~~~a~~~ 83 (160)
T PF13377_consen 8 GHRRIAFIG-GPPNSSVSRERL-EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAII-CSNDRLALGV 83 (160)
T ss_dssp T-SSEEEEE-SSTTSHHHHHHH-HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEE-ESSHHHHHHH
T ss_pred CCCeEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEE-EcCHHHHHHH
Confidence 456777777 333333333334 3466678889987665544333222 11111 12211 346554 5999999999
Q ss_pred HHHHHcCCCCCCCCCccEEEeecCCcchh
Q 003866 353 LNGLLSRGNQKEGISIPIGIIPAGSDNSL 381 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIPaGTGNdf 381 (790)
+++|.+..- ...--++|+-.+....+
T Consensus 84 ~~~l~~~g~---~vP~di~vv~~~~~~~~ 109 (160)
T PF13377_consen 84 LRALRELGI---RVPQDISVVSFDDSPLL 109 (160)
T ss_dssp HHHHHHTTS---CTTTTSEEEEESSSGHH
T ss_pred HHHHHHcCC---cccccccEEEecCcHHH
Confidence 999988742 11123677776654444
No 264
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=20.03 E-value=1.2e+02 Score=29.50 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=26.6
Q ss_pred eCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 318 TTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 318 Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
..+.....++.+. .|.||.-||=||+.|++.. .+|+-+||.-.
T Consensus 60 ~~~~~~m~~~m~~------aDlvIs~aG~~Ti~E~l~~-----------g~P~I~ip~~~ 102 (167)
T PF04101_consen 60 FGFVDNMAELMAA------ADLVISHAGAGTIAEALAL-----------GKPAIVIPLPG 102 (167)
T ss_dssp ECSSSSHHHHHHH------HSEEEECS-CHHHHHHHHC-----------T--EEEE--TT
T ss_pred EechhhHHHHHHH------cCEEEeCCCccHHHHHHHc-----------CCCeeccCCCC
Confidence 3444445555554 3889999999999998752 57888888866
No 265
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=20.03 E-value=1.8e+02 Score=29.49 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=31.8
Q ss_pred hHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 301 IVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 301 ~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
.+...|++.|.+++++..+. ..+.++ +.+ .+|+||+.||.|...+.
T Consensus 14 nl~~~l~~~~~~~~v~~~~~-~~~~~~-~~~----~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 14 NLYQYFCELGTEVMVKRNDE-LQLTDI-EQL----APSHLVISPGPCTPNEA 59 (191)
T ss_pred HHHHHHHHCCCcEEEEeCCC-CCHHHH-Hhc----CCCeEEEcCCCCChHhC
Confidence 46668888998888776442 233333 221 37999999999998764
Done!