Query 003866
Match_columns 790
No_of_seqs 392 out of 1621
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 2.2E-43 7.4E-48 376.8 25.9 287 276-782 6-296 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 3.6E-40 1.2E-44 356.1 26.4 288 278-783 24-315 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 2E-39 6.8E-44 350.2 23.8 180 277-470 28-209 (332)
4 2an1_A Putative kinase; struct 99.2 2.2E-11 7.5E-16 128.7 9.3 112 278-403 5-121 (292)
5 1yt5_A Inorganic polyphosphate 98.9 1.8E-09 6E-14 112.8 10.3 98 279-404 1-99 (258)
6 1u0t_A Inorganic polyphosphate 98.9 1.6E-09 5.3E-14 116.0 9.9 116 277-405 3-135 (307)
7 2i2c_A Probable inorganic poly 98.7 3.3E-08 1.1E-12 104.0 9.6 95 279-404 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 97.9 1.8E-05 6.1E-10 87.6 8.7 115 276-404 39-174 (388)
9 1z0s_A Probable inorganic poly 96.6 0.0079 2.7E-07 63.7 10.4 94 278-400 29-122 (278)
10 3pfn_A NAD kinase; structural 95.1 0.078 2.7E-06 58.2 10.5 115 276-404 36-167 (365)
11 1o2d_A Alcohol dehydrogenase, 87.2 3.4 0.00012 44.8 11.7 95 279-378 41-153 (371)
12 3ce9_A Glycerol dehydrogenase; 81.5 2.7 9.4E-05 45.1 7.6 83 279-375 35-120 (354)
13 1vlj_A NADH-dependent butanol 80.6 4.8 0.00016 44.2 9.3 92 279-375 44-151 (407)
14 3okf_A 3-dehydroquinate syntha 79.8 7.7 0.00026 42.7 10.6 88 277-375 61-157 (390)
15 3bfj_A 1,3-propanediol oxidore 79.4 7.8 0.00027 42.1 10.5 96 278-378 33-147 (387)
16 4grd_A N5-CAIR mutase, phospho 75.8 17 0.00059 35.8 10.5 76 277-358 11-90 (173)
17 3ox4_A Alcohol dehydrogenase 2 75.1 6.7 0.00023 42.8 8.4 92 278-375 31-138 (383)
18 1jq5_A Glycerol dehydrogenase; 74.8 2.2 7.5E-05 46.1 4.4 84 279-375 32-118 (370)
19 1rrm_A Lactaldehyde reductase; 70.1 4.4 0.00015 44.0 5.4 95 278-378 31-145 (386)
20 3uhj_A Probable glycerol dehyd 69.1 4.7 0.00016 44.2 5.4 83 279-375 53-138 (387)
21 1ta9_A Glycerol dehydrogenase; 68.6 5.7 0.0002 44.4 6.1 83 279-375 92-177 (450)
22 1sg6_A Pentafunctional AROM po 68.4 14 0.00048 40.4 9.0 94 278-382 36-148 (393)
23 1oj7_A Hypothetical oxidoreduc 64.9 9.6 0.00033 41.8 6.9 93 279-378 51-164 (408)
24 3qbe_A 3-dehydroquinate syntha 63.8 16 0.00054 39.9 8.2 86 279-375 44-137 (368)
25 3ors_A N5-carboxyaminoimidazol 61.0 32 0.0011 33.6 8.9 74 279-358 4-81 (163)
26 3kuu_A Phosphoribosylaminoimid 60.9 49 0.0017 32.6 10.2 76 277-358 11-90 (174)
27 2cod_A Centaurin-delta 1; ARF 60.3 23 0.00079 30.8 7.3 58 162-238 30-95 (115)
28 1eaz_A Tandem PH domain contai 59.7 13 0.00043 32.8 5.5 59 162-238 35-107 (125)
29 3hl0_A Maleylacetate reductase 59.5 11 0.00038 40.7 6.0 82 278-375 34-119 (353)
30 1v5u_A SBF1, SET binding facto 58.4 18 0.00063 31.3 6.3 21 218-238 87-107 (117)
31 2gru_A 2-deoxy-scyllo-inosose 56.7 52 0.0018 35.5 10.7 87 278-375 34-128 (368)
32 3lp6_A Phosphoribosylaminoimid 55.7 43 0.0015 33.0 8.8 74 279-358 8-85 (174)
33 3jzd_A Iron-containing alcohol 55.5 20 0.00069 38.7 7.2 82 278-375 36-121 (358)
34 3h75_A Periplasmic sugar-bindi 55.2 64 0.0022 33.3 10.9 90 279-377 4-96 (350)
35 3jy6_A Transcriptional regulat 53.6 69 0.0024 31.6 10.4 86 277-374 6-92 (276)
36 3l6u_A ABC-type sugar transpor 53.6 50 0.0017 32.8 9.4 90 276-375 6-97 (293)
37 1wgq_A FYVE, rhogef and PH dom 51.1 36 0.0012 29.2 6.9 22 217-238 78-99 (109)
38 2dn6_A KIAA0640 protein; PH do 50.4 25 0.00084 30.4 5.7 21 218-238 79-99 (115)
39 2fep_A Catabolite control prot 50.4 65 0.0022 32.2 9.7 88 275-373 13-101 (289)
40 3egc_A Putative ribose operon 50.0 40 0.0014 33.6 8.0 89 276-375 6-95 (291)
41 3f6r_A Flavodoxin; FMN binding 49.6 33 0.0011 31.3 6.7 88 279-376 2-94 (148)
42 3oow_A Phosphoribosylaminoimid 49.5 52 0.0018 32.2 8.2 73 280-358 7-83 (166)
43 1xah_A Sadhqs, 3-dehydroquinat 48.7 39 0.0013 36.2 8.0 84 279-375 32-124 (354)
44 1fao_A Dual adaptor of phospho 48.4 42 0.0014 29.5 7.1 59 162-238 39-108 (126)
45 3c3k_A Alanine racemase; struc 48.1 89 0.003 31.0 10.3 85 277-373 7-92 (285)
46 2rsg_A Collagen type IV alpha- 47.6 14 0.00048 31.1 3.6 21 218-238 70-90 (94)
47 1x05_A Pleckstrin; PH domain, 46.5 1.1E+02 0.0037 26.9 9.5 21 218-238 96-116 (129)
48 1v89_A Hypothetical protein KI 46.2 60 0.002 27.8 7.6 67 162-238 29-108 (118)
49 3gv0_A Transcriptional regulat 45.8 49 0.0017 33.1 7.9 89 276-374 6-96 (288)
50 3gbv_A Putative LACI-family tr 45.7 63 0.0021 32.1 8.7 91 276-375 6-102 (304)
51 3clh_A 3-dehydroquinate syntha 44.7 16 0.00055 39.1 4.3 87 278-375 26-119 (343)
52 3tb6_A Arabinose metabolism tr 44.7 1.1E+02 0.0039 30.0 10.4 86 279-374 16-106 (298)
53 3m9w_A D-xylose-binding peripl 44.6 1.2E+02 0.004 30.5 10.6 87 279-375 3-91 (313)
54 3l49_A ABC sugar (ribose) tran 43.9 1.1E+02 0.0037 30.3 10.1 89 277-375 4-94 (291)
55 3kjx_A Transcriptional regulat 43.7 1.3E+02 0.0045 30.8 11.1 87 276-373 66-153 (344)
56 1kq3_A Glycerol dehydrogenase; 43.6 9.4 0.00032 41.3 2.2 84 279-375 42-126 (376)
57 3trh_A Phosphoribosylaminoimid 43.6 50 0.0017 32.4 7.1 74 279-358 7-84 (169)
58 1qtn_A Caspase-8; apoptosis, d 43.2 1.1E+02 0.0039 29.3 9.7 70 272-341 16-101 (164)
59 3brq_A HTH-type transcriptiona 42.8 1.3E+02 0.0043 29.7 10.4 87 277-374 18-108 (296)
60 3n7t_A Macrophage binding prot 42.7 1.1E+02 0.0038 31.2 10.0 36 336-378 105-149 (247)
61 2rgy_A Transcriptional regulat 42.6 53 0.0018 32.8 7.6 87 277-374 7-97 (290)
62 3dbi_A Sugar-binding transcrip 42.2 1.7E+02 0.0057 29.9 11.5 89 276-374 59-150 (338)
63 3e61_A Putative transcriptiona 42.1 82 0.0028 31.0 8.8 86 277-375 7-94 (277)
64 1dyn_A Dynamin; signal transdu 41.9 52 0.0018 30.8 6.6 69 160-238 33-113 (125)
65 3rpe_A MDAB, modulator of drug 41.8 34 0.0012 34.6 5.9 63 277-343 24-90 (218)
66 3bil_A Probable LACI-family tr 41.8 98 0.0033 32.1 9.7 86 277-373 65-151 (348)
67 3p45_A Caspase-6; protease, hu 41.3 1.1E+02 0.0039 30.0 9.4 61 272-332 37-104 (179)
68 3d8u_A PURR transcriptional re 41.3 82 0.0028 30.9 8.6 85 278-373 3-88 (275)
69 2iks_A DNA-binding transcripti 40.6 69 0.0024 31.9 8.1 89 276-374 18-107 (293)
70 1m72_A Caspase-1; caspase, cys 40.6 73 0.0025 33.1 8.4 61 272-333 25-92 (272)
71 4a6h_A Phosphatidylinositol 4, 40.5 60 0.0021 29.4 6.9 21 218-238 94-114 (120)
72 2nn3_C Caspase-1; cysteine pro 40.5 83 0.0028 33.5 8.9 111 272-383 53-185 (310)
73 3o74_A Fructose transport syst 40.0 57 0.0019 31.9 7.2 86 279-374 3-89 (272)
74 3fni_A Putative diflavin flavo 39.9 75 0.0026 29.8 7.7 86 278-375 4-95 (159)
75 2x7x_A Sensor protein; transfe 39.9 1.2E+02 0.0043 30.7 10.0 87 277-374 5-94 (325)
76 2fqx_A Membrane lipoprotein TM 39.8 2.1E+02 0.007 29.5 11.8 88 278-374 4-93 (318)
77 3h11_B Caspase-8; cell death, 39.7 1.1E+02 0.0037 31.8 9.5 111 272-383 10-151 (271)
78 3g1w_A Sugar ABC transporter; 39.2 75 0.0026 31.8 8.1 88 278-375 4-94 (305)
79 3k4h_A Putative transcriptiona 39.1 87 0.003 31.0 8.5 89 276-374 6-99 (292)
80 1fgy_A GRP1; PH domain, signal 39.0 58 0.002 28.4 6.4 22 217-238 95-116 (127)
81 1nw9_B Caspase 9, apoptosis-re 38.9 96 0.0033 32.1 9.0 62 272-333 14-82 (277)
82 3iv7_A Alcohol dehydrogenase I 38.8 15 0.00051 39.9 2.9 79 279-375 38-120 (364)
83 3rg8_A Phosphoribosylaminoimid 38.6 99 0.0034 30.0 8.3 74 280-358 4-81 (159)
84 3l7n_A Putative uncharacterize 38.6 40 0.0014 33.8 5.8 57 279-348 1-57 (236)
85 1o4v_A Phosphoribosylaminoimid 38.5 1.2E+02 0.0041 30.1 9.0 84 280-378 15-102 (183)
86 3k9c_A Transcriptional regulat 38.2 1E+02 0.0035 30.7 8.9 86 276-374 10-95 (289)
87 3qk7_A Transcriptional regulat 38.2 70 0.0024 32.1 7.7 89 276-374 4-95 (294)
88 2hsg_A Glucose-resistance amyl 38.0 1.5E+02 0.0051 30.2 10.3 88 276-374 58-146 (332)
89 3od5_A Caspase-6; caspase doma 36.8 1.2E+02 0.0041 31.6 9.3 113 272-384 14-148 (278)
90 3rf7_A Iron-containing alcohol 36.4 57 0.0019 35.5 7.0 88 279-375 54-159 (375)
91 1dbq_A Purine repressor; trans 35.6 1.6E+02 0.0054 28.9 9.8 88 277-374 6-94 (289)
92 1rw7_A YDR533CP; alpha-beta sa 35.5 98 0.0033 31.0 8.2 44 336-383 98-146 (243)
93 2fn9_A Ribose ABC transporter, 35.3 1.3E+02 0.0044 29.7 9.1 86 279-374 3-90 (290)
94 2dko_A Caspase-3; low barrier 35.0 1.1E+02 0.0038 28.8 8.0 60 274-333 11-77 (146)
95 1xmp_A PURE, phosphoribosylami 34.9 1.1E+02 0.0037 30.1 7.9 85 279-378 12-100 (170)
96 1u11_A PURE (N5-carboxyaminoim 34.9 1.4E+02 0.0048 29.6 8.8 74 279-358 22-99 (182)
97 1mkz_A Molybdenum cofactor bio 34.8 1.5E+02 0.0052 28.3 9.1 68 277-347 9-80 (172)
98 2d9w_A Docking protein 2; PH d 34.7 41 0.0014 31.6 4.7 46 173-237 64-116 (127)
99 1v88_A Oxysterol binding prote 34.6 41 0.0014 30.8 4.8 22 217-238 99-120 (130)
100 1mai_A Phospholipase C delta-1 34.6 47 0.0016 30.5 5.2 48 174-237 56-116 (131)
101 2h31_A Multifunctional protein 34.4 1.6E+02 0.0053 32.9 10.1 75 278-358 265-344 (425)
102 4ehd_A Caspase-3; caspase, apo 34.2 80 0.0027 33.0 7.5 111 272-383 37-170 (277)
103 3h5o_A Transcriptional regulat 34.2 2E+02 0.0067 29.4 10.5 86 277-373 61-147 (339)
104 2o20_A Catabolite control prot 33.6 1.4E+02 0.0047 30.5 9.2 86 277-373 62-148 (332)
105 3kke_A LACI family transcripti 33.6 1.6E+02 0.0054 29.5 9.5 88 276-374 13-101 (303)
106 3lft_A Uncharacterized protein 33.5 1.4E+02 0.0048 29.9 9.1 77 277-359 132-208 (295)
107 8abp_A L-arabinose-binding pro 33.3 1.8E+02 0.0062 28.8 9.8 86 279-374 3-89 (306)
108 2fvy_A D-galactose-binding per 33.1 1.9E+02 0.0065 28.6 10.0 68 300-375 22-92 (309)
109 4dzz_A Plasmid partitioning pr 33.0 2E+02 0.0067 26.9 9.6 48 279-328 1-48 (206)
110 3uug_A Multiple sugar-binding 33.0 1.5E+02 0.0052 29.8 9.3 87 279-375 4-92 (330)
111 1wg7_A Dedicator of cytokinesi 32.9 54 0.0019 29.9 5.3 21 218-238 100-120 (150)
112 3snr_A Extracellular ligand-bi 32.0 1E+02 0.0036 31.2 7.9 84 277-370 134-219 (362)
113 2fp3_A Caspase NC; apoptosis, 31.8 1.1E+02 0.0038 32.5 8.2 112 272-383 53-191 (316)
114 2h54_A Caspase-1; allosteric s 31.5 1.9E+02 0.0063 28.2 9.2 33 300-332 68-100 (178)
115 2vk2_A YTFQ, ABC transporter p 31.4 1.3E+02 0.0043 30.3 8.3 85 279-373 3-89 (306)
116 1y5e_A Molybdenum cofactor bio 31.3 1.8E+02 0.0061 27.7 8.9 68 277-347 12-83 (169)
117 4b4k_A N5-carboxyaminoimidazol 31.1 1.3E+02 0.0046 29.7 7.9 72 280-357 24-99 (181)
118 1pfk_A Phosphofructokinase; tr 30.9 59 0.002 34.8 5.9 51 325-384 84-134 (320)
119 1ujn_A Dehydroquinate synthase 30.5 1.1E+02 0.0037 32.7 7.9 84 278-375 28-118 (348)
120 1oi4_A Hypothetical protein YH 30.3 67 0.0023 31.0 5.7 94 276-383 21-133 (193)
121 2qip_A Protein of unknown func 30.1 79 0.0027 30.0 6.1 24 336-359 108-131 (165)
122 3miz_A Putative transcriptiona 30.0 1.8E+02 0.0061 29.0 9.1 71 276-348 11-82 (301)
123 1zxx_A 6-phosphofructokinase; 29.6 60 0.002 34.8 5.6 51 325-384 83-133 (319)
124 2w2x_D 1-phosphatidylinositol- 29.2 77 0.0026 28.4 5.6 22 217-238 94-115 (124)
125 3tfm_A Myosin X; split PH doma 29.1 51 0.0017 33.0 4.8 59 163-239 85-152 (228)
126 2rjo_A Twin-arginine transloca 29.0 1.4E+02 0.0049 30.3 8.3 88 277-374 4-95 (332)
127 3ej6_A Catalase-3; heme, hydro 28.5 46 0.0016 39.4 4.8 88 277-377 536-640 (688)
128 3hcw_A Maltose operon transcri 28.4 63 0.0022 32.4 5.4 89 276-374 5-98 (295)
129 1vhq_A Enhancing lycopene bios 28.3 1.6E+02 0.0055 29.2 8.3 99 277-385 5-150 (232)
130 1x1f_A Signal-transducing adap 28.2 90 0.0031 29.4 6.1 59 162-238 39-109 (149)
131 2iuf_A Catalase; oxidoreductas 28.0 17 0.0006 42.9 1.2 93 278-382 529-646 (688)
132 3o1i_D Periplasmic protein TOR 28.0 1.3E+02 0.0044 29.8 7.6 86 277-373 4-93 (304)
133 1pyo_A Caspase-2; apoptosis, c 27.9 2.3E+02 0.0078 27.3 9.0 58 276-333 30-94 (167)
134 3aj4_A Pleckstrin homology dom 27.6 34 0.0012 29.5 2.8 21 218-238 87-107 (112)
135 3rot_A ABC sugar transporter, 27.4 1.4E+02 0.0046 29.9 7.7 67 300-374 23-93 (297)
136 2qh8_A Uncharacterized protein 27.4 1.5E+02 0.0051 29.9 8.0 75 277-357 139-213 (302)
137 3bbl_A Regulatory protein of L 27.3 1.1E+02 0.0037 30.4 6.9 87 277-373 3-93 (287)
138 2cof_A Protein KIAA1914; PH do 26.8 44 0.0015 28.7 3.4 22 217-238 76-97 (107)
139 3iwt_A 178AA long hypothetical 26.3 1E+02 0.0035 29.4 6.3 48 300-347 43-92 (178)
140 2hig_A 6-phospho-1-fructokinas 26.2 53 0.0018 37.2 4.7 53 326-384 180-235 (487)
141 3rcp_A Pleckstrin homology dom 26.1 44 0.0015 28.3 3.2 21 218-238 69-89 (103)
142 1f4p_A Flavodoxin; electron tr 25.7 81 0.0028 28.4 5.1 85 279-378 1-95 (147)
143 2h3h_A Sugar ABC transporter, 25.6 2.2E+02 0.0075 28.6 8.9 67 300-374 20-89 (313)
144 3kkl_A Probable chaperone prot 25.6 2.2E+02 0.0075 28.8 8.9 36 336-378 98-142 (244)
145 2ql9_A Caspase-7; cysteine pro 25.6 1.5E+02 0.005 29.0 7.2 59 275-333 40-105 (173)
146 3opy_A 6-phosphofructo-1-kinas 25.4 67 0.0023 39.4 5.5 60 323-384 676-735 (989)
147 3e3m_A Transcriptional regulat 25.1 2.5E+02 0.0086 28.9 9.5 86 277-373 69-155 (355)
148 1t35_A Hypothetical protein YV 25.1 92 0.0031 30.6 5.7 46 323-376 21-67 (191)
149 1zl0_A Hypothetical protein PA 24.8 76 0.0026 33.7 5.4 68 278-349 16-94 (311)
150 3ulb_A Target of rapamycin com 24.7 1.3E+02 0.0046 27.9 6.2 52 175-238 58-110 (121)
151 2pjk_A 178AA long hypothetical 24.7 2.5E+02 0.0085 27.1 8.7 69 277-347 14-92 (178)
152 2rlo_A Centaurin-gamma 1; spli 24.3 40 0.0014 30.1 2.7 21 218-238 100-120 (128)
153 1qpz_A PURA, protein (purine n 24.0 3.3E+02 0.011 27.6 10.1 89 276-374 56-145 (340)
154 3clk_A Transcription regulator 23.9 1.7E+02 0.006 28.9 7.7 87 277-374 7-95 (290)
155 2d9v_A Pleckstrin homology dom 23.8 44 0.0015 30.1 2.9 22 218-239 90-111 (130)
156 4a3s_A 6-phosphofructokinase; 23.8 84 0.0029 33.5 5.5 41 336-384 93-133 (319)
157 2ywx_A Phosphoribosylaminoimid 23.6 2.6E+02 0.0088 27.1 8.3 72 290-375 7-82 (157)
158 3ksm_A ABC-type sugar transpor 23.6 2E+02 0.0069 27.8 8.0 68 300-375 20-92 (276)
159 4evq_A Putative ABC transporte 23.4 2E+02 0.0067 29.4 8.2 79 277-360 150-230 (375)
160 3sbx_A Putative uncharacterize 23.3 98 0.0034 30.6 5.5 45 324-376 33-78 (189)
161 2b99_A Riboflavin synthase; lu 23.1 1.9E+02 0.0065 27.9 7.3 75 279-358 3-86 (156)
162 3brs_A Periplasmic binding pro 23.0 1.4E+02 0.0049 29.3 6.8 88 277-374 4-97 (289)
163 1u9c_A APC35852; structural ge 23.0 1.7E+02 0.0059 28.4 7.3 97 277-383 4-137 (224)
164 3hly_A Flavodoxin-like domain; 22.9 2.3E+02 0.0078 26.3 7.8 84 279-375 1-90 (161)
165 3huu_A Transcription regulator 22.8 1.5E+02 0.0051 29.7 6.9 67 300-375 47-114 (305)
166 3cxb_B Pleckstrin homology dom 22.7 43 0.0015 29.5 2.6 21 218-238 77-97 (112)
167 4h1h_A LMO1638 protein; MCCF-l 22.5 80 0.0027 33.5 5.0 71 278-350 11-93 (327)
168 1btn_A Beta-spectrin; signal t 22.5 51 0.0018 27.8 2.9 21 218-238 84-104 (106)
169 2da0_A 130-kDa phosphatidylino 22.3 55 0.0019 28.5 3.2 21 218-238 77-97 (114)
170 3hcw_A Maltose operon transcri 22.3 2.2E+02 0.0077 28.3 8.2 92 277-376 130-228 (295)
171 2d9y_A Pleckstrin homology dom 22.1 52 0.0018 28.3 2.9 22 218-239 85-106 (117)
172 1u5d_A SKAP55, SRC kinase-asso 22.1 47 0.0016 27.9 2.6 21 218-238 81-101 (108)
173 1btk_A Bruton'S tyrosine kinas 21.8 1.7E+02 0.0058 27.8 6.8 21 218-238 108-128 (169)
174 2j32_A Caspase-3; Pro-caspase3 21.8 2E+02 0.0067 29.3 7.6 109 275-383 12-142 (250)
175 1jye_A Lactose operon represso 21.6 4.7E+02 0.016 26.7 10.7 66 277-345 60-127 (349)
176 2iz6_A Molybdenum cofactor car 21.6 1.2E+02 0.004 29.7 5.6 45 324-376 34-79 (176)
177 1u5e_A SRC-associated adaptor 21.4 1.3E+02 0.0044 29.8 6.0 60 162-238 131-204 (211)
178 3hbm_A UDP-sugar hydrolase; PS 21.4 93 0.0032 32.4 5.1 68 280-375 185-252 (282)
179 3g85_A Transcriptional regulat 21.2 1.1E+02 0.0036 30.3 5.4 89 276-374 9-98 (289)
180 1wjm_A Beta-spectrin III; PH d 21.0 55 0.0019 28.8 2.9 21 218-238 93-113 (123)
181 3d02_A Putative LACI-type tran 21.0 3.3E+02 0.011 26.8 9.1 85 279-373 5-92 (303)
182 2i5f_A Pleckstrin; PH domain, 21.0 55 0.0019 27.7 2.8 21 218-238 85-105 (109)
183 2dri_A D-ribose-binding protei 21.0 2.7E+02 0.0092 27.2 8.3 66 300-373 21-88 (271)
184 2ab0_A YAJL; DJ-1/THIJ superfa 20.9 1.4E+02 0.0047 29.0 6.1 93 278-383 2-115 (205)
185 2dhk_A TBC1 domain family memb 20.8 50 0.0017 29.1 2.6 22 218-239 80-101 (119)
186 1pls_A Pleckstrin homology dom 20.8 63 0.0021 27.8 3.2 21 218-238 77-97 (113)
187 2coc_A FYVE, rhogef and PH dom 20.7 58 0.002 29.2 3.0 21 218-238 82-102 (112)
188 2i0f_A 6,7-dimethyl-8-ribityll 20.7 1.7E+02 0.0059 28.2 6.4 96 279-377 13-122 (157)
189 1unq_A RAC-alpha serine/threon 20.6 67 0.0023 28.2 3.4 22 217-238 85-106 (125)
190 3lkv_A Uncharacterized conserv 20.6 2.1E+02 0.0072 29.2 7.7 76 277-358 139-214 (302)
191 1byk_A Protein (trehalose oper 20.5 2.7E+02 0.0092 26.8 8.1 66 279-347 3-69 (255)
192 3sir_A Caspase; hydrolase; 2.6 20.4 1.8E+02 0.0062 29.8 7.0 57 275-333 16-80 (259)
193 1ydh_A AT5G11950; structural g 20.3 1.1E+02 0.0039 30.7 5.4 43 324-374 30-73 (216)
194 2d9x_A Oxysterol binding prote 20.1 51 0.0017 29.0 2.5 21 218-238 80-100 (120)
195 3cwq_A Para family chromosome 20.1 2.7E+02 0.0091 26.8 7.9 45 281-328 2-46 (209)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=2.2e-43 Score=376.78 Aligned_cols=287 Identities=22% Similarity=0.290 Sum_probs=215.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
.+++|++||+||.||++++.+.| +.+++.|++++++++++.|+.++|+.++++++.. .+|.||++|||||||||+|+
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~--~~d~vv~~GGDGTl~~v~~~ 82 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS--KVDLIIVFGGDGTVFECTNG 82 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT--TCSEEEEEECHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc--CCCEEEEEccchHHHHHHHH
Confidence 46789999999999999988888 5789999999999999999999999999999853 57999999999999999999
Q ss_pred HHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccch
Q 003866 356 LLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~ 435 (790)
|+.++ .++|||+||+||+|+||+++..+.++.+|+..|++|..+++|+++++ + +||+|++++||+|+|+
T Consensus 83 l~~~~-----~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~iDlg~v~----~--~~F~~~~~~G~da~v~ 151 (304)
T 3s40_A 83 LAPLE-----IRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKAN----G--QHFLNFWGIGLVSEVS 151 (304)
T ss_dssp HTTCS-----SCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEEEEEEEET----T--EEESSEEEEC------
T ss_pred HhhCC-----CCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEEEEEEEEC----C--EEEEEEEeehHHHHHH
Confidence 98752 26999999999999999974445699999999999999999999996 2 4778999999999999
Q ss_pred hhhH-HHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCC
Q 003866 436 ELSE-KYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (790)
Q Consensus 436 ~~se-k~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As 514 (790)
...+ +.|+++|+++|++++++.++++++++++|++++ +
T Consensus 152 ~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg--------------~--------------------------- 190 (304)
T 3s40_A 152 NNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYDG--------------Q--------------------------- 190 (304)
T ss_dssp ------------CHHHHTTTC------CCEEEEEEETT--------------E---------------------------
T ss_pred HhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEECC--------------E---------------------------
Confidence 7543 456689999999999999999998888887631 0
Q ss_pred CCCCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003866 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (790)
Q Consensus 515 ~~Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~ 594 (790)
T Consensus 191 -------------------------------------------------------------------------------- 190 (304)
T 3s40_A 191 -------------------------------------------------------------------------------- 190 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003866 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (790)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W 674 (790)
T Consensus 191 -------------------------------------------------------------------------------- 190 (304)
T 3s40_A 191 -------------------------------------------------------------------------------- 190 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEee---e
Q 003866 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAG---K 751 (790)
Q Consensus 675 ~~ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~---~ 751 (790)
+++++++++.++|+++ ......++|.|.++||.|||++|+..+++.+..+|..+..|. ...|+|++++++.. .
T Consensus 191 -~~~~~~~~v~v~N~~~--~Ggg~~~~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~-~~~~~v~~~~~~~v~i~~ 266 (304)
T 3s40_A 191 -VYEDEAVLVMVGNGEY--LGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED-SNENDIFHVKAKSIHIET 266 (304)
T ss_dssp -EEEEEEEEEEEECSSE--ETTEECSSTTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSC-CCTTTEEEEEESEEEEEE
T ss_pred -EEEeEEEEEEEECCCc--CCCCcccCCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCC-CCCCcEEEEEccEEEEEe
Confidence 1244556666666553 234455677888999999999999999987766665555565 88899999996653 2
Q ss_pred eCCCCeeecCceeecCceeeecccccccccc
Q 003866 752 HTHNSCGIDGELFPLNGQVISSLLPEQCRLI 782 (790)
Q Consensus 752 ~~~~g~~vDGE~~~~~~~v~~~llp~~~~l~ 782 (790)
..+..+++|||.+.. .++.++++|...+++
T Consensus 267 ~~~~~~~~DGE~~~~-~p~~i~v~p~al~v~ 296 (304)
T 3s40_A 267 EEEKEVDTDGESSLH-TPCQIELLQGHFTMI 296 (304)
T ss_dssp SSCCEEEEC--CCEE-SSEEEEEEEEEEEEE
T ss_pred CCCcEEEeCCCCCCC-ceEEEEEECCeEEEE
Confidence 233349999999864 589999999888776
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=3.6e-40 Score=356.13 Aligned_cols=288 Identities=23% Similarity=0.299 Sum_probs=231.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+++++||+||.||++++.+.+ +.+++.|+++|+++.++.|+.++|+.++++++... .+|.||++||||||+||+|+|+
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~-~~d~vvv~GGDGTv~~v~~~l~ 101 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHE-NYDVLIAAGGDGTLNEVVNGIA 101 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTT-TCSEEEEEECHHHHHHHHHHHT
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhc-CCCEEEEEcCchHHHHHHHHHH
Confidence 568999999999999988877 57899999999999999999999999999887543 4799999999999999999996
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccchhh
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL 437 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~~~ 437 (790)
..+ .++|||+||+||+|+||+++..+.++.+++..|++|..+++|+++++ + +||++++++||+|+|+..
T Consensus 102 ~~~-----~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~----~--r~fl~~~~~G~~a~v~~~ 170 (337)
T 2qv7_A 102 EKP-----NRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMN----N--RYFINLAAGGQLTQVSYE 170 (337)
T ss_dssp TCS-----SCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEET----T--EEESSEEEEECBCC----
T ss_pred hCC-----CCCcEEEecCCcHhHHHHHcCCCCCHHHHHHHHHcCCcEEEEEEEEC----C--EEEEEEeeecccHHHHHH
Confidence 542 26999999999999999974335789999999999999999999995 2 467899999999999875
Q ss_pred hH-HHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceEEEEecCCCCCCCccCCCCCCC
Q 003866 438 SE-KYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSI 516 (790)
Q Consensus 438 se-k~K~~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~e~ve~~~l~l~V~Nr~~GGG~~iaP~As~~ 516 (790)
.+ ..|+++|.++|++++++.++.++.++++|++++ +.
T Consensus 171 ~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg--------------~~---------------------------- 208 (337)
T 2qv7_A 171 TPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDG--------------NV---------------------------- 208 (337)
T ss_dssp ---------CGGGSCCCTTTTGGGBCCEEEEEEETT--------------EE----------------------------
T ss_pred hhHHHHhccChHHHHHHHHHHHHhCCCccEEEEECC--------------EE----------------------------
Confidence 43 345578999999999999998888888887631 00
Q ss_pred CCCCCCCCCCCCCceeEeccCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccc
Q 003866 517 DSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWT 596 (790)
Q Consensus 517 Dgil~~sr~~DG~LDVvcs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~~~s~~r~~~~~ 596 (790)
T Consensus 209 -------------------------------------------------------------------------------- 208 (337)
T 2qv7_A 209 -------------------------------------------------------------------------------- 208 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEE
Q 003866 597 GLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIV 676 (790)
Q Consensus 597 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~p~~~~~W~~ 676 (790)
T Consensus 209 -------------------------------------------------------------------------------- 208 (337)
T 2qv7_A 209 -------------------------------------------------------------------------------- 208 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccEEEEEEeccccccccCCcccCCCCcCCCCeEEEEEEcccChHHHHHHHHhhccCCCCCCCcEEEEEEEeeee---C
Q 003866 677 KKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKIKAGKH---T 753 (790)
Q Consensus 677 ieG~Fv~V~~~N~s~~~~q~d~~~AP~A~l~DG~ldLilV~~~sR~~Llr~ll~~~~G~hl~~p~Ve~~kvk~~~~---~ 753 (790)
+++++++|.++|.+. ......++|.|.++||.||+++|+..++++|++++..+..|+|...|+|++++++.... .
T Consensus 209 ~~~~~~~v~v~n~~~--~gGg~~i~P~a~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~ 286 (337)
T 2qv7_A 209 FQGEALLFFLGLTNS--MAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFT 286 (337)
T ss_dssp EEEEEEEEEEESSCC--CSSCSCSSTTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSS
T ss_pred EEeeEEEEEEECCCC--CCCCCccCCCCcCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECC
Confidence 134555565566542 23455667889999999999999999999999999999999999999999998665332 2
Q ss_pred CCCeeecCceeecCceeeeccccccccccc
Q 003866 754 HNSCGIDGELFPLNGQVISSLLPEQCRLIG 783 (790)
Q Consensus 754 ~~g~~vDGE~~~~~~~v~~~llp~~~~l~~ 783 (790)
+..+++|||.+.. .++.++++|..++++-
T Consensus 287 ~~~~~iDGE~~~~-~~i~i~v~p~~l~v~~ 315 (337)
T 2qv7_A 287 DLQLNVDGEYGGK-LPANFLNLERHIDVFA 315 (337)
T ss_dssp CCEEEETTEEEEE-SCEEEEEEEEEEEEEC
T ss_pred CCeEEECCCcCCC-CcEEEEEEcCeEEEEe
Confidence 2338999999874 4799999999999885
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=2e-39 Score=350.20 Aligned_cols=180 Identities=23% Similarity=0.298 Sum_probs=146.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
+++|++||+||.||++ +.+ +.+.+.|+++++++.+..|+.++++.++++++... .+|.||++||||||+||+|+|
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~-~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~-~~d~vvv~GGDGTl~~v~~~l 102 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPL-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKF-GVATVIAGGGDGTINEVSTAL 102 (332)
T ss_dssp --CCEEEEECSSSTTC---HHH-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHH-TCSEEEEEESHHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chH-HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhc-CCCEEEEEccchHHHHHHHHH
Confidence 3578999999999987 456 46788999999999999999999999998876544 479999999999999999999
Q ss_pred HcCCCCCCCCCccEEEeecCCcchhhhhhcC-CCChHHHHHHHHhCceeEEeEEEEEeeecceEEEEEEEEEEeeeccch
Q 003866 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLG-VRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPaGTGNdfArsllG-~~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~agiGfdAdV~ 435 (790)
..+.. ..++|||+||+||+|+||++ ++ +.++.+++..|++|..+++|+++++ ++ .+|++++++||+|+|+
T Consensus 103 ~~~~~---~~~~plgiiP~Gt~N~fa~~-l~i~~~~~~al~~i~~g~~~~iDlg~v~----~r-~~fl~~~~~G~da~v~ 173 (332)
T 2bon_A 103 IQCEG---DDIPALGILPLGTANDFATS-VGIPEALDKALKLAIAGDAIAIDMAQVN----KQ-TCFINMATGGFGTRIT 173 (332)
T ss_dssp HHCCS---SCCCEEEEEECSSSCHHHHH-TTCCSSHHHHHHHHHHSEEEEEEEEEET----TS-CEESSEEEEEEEEEC-
T ss_pred hhccc---CCCCeEEEecCcCHHHHHHh-cCCCCCHHHHHHHHHcCCeEEeeEEEEC----Cc-eEEEEEEeECccHHHH
Confidence 96521 23689999999999999997 55 6789999999999999999999996 22 2678999999999998
Q ss_pred hh-hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEE
Q 003866 436 EL-SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEY 470 (790)
Q Consensus 436 ~~-sek~K~~lG~lrY~laal~~L~~~r~y~~~I~~ 470 (790)
.. .++.|+++|+++|++++++.++.++.++++|++
T Consensus 174 ~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~ 209 (332)
T 2bon_A 174 TETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRG 209 (332)
T ss_dssp ---------CCHHHHHHHHHTSCEEEEECEEEEEEE
T ss_pred HHhhHHhHhcccHHHHHHHHHHHHhhCCCeeEEEEE
Confidence 54 456667889999999999888887777777766
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.20 E-value=2.2e-11 Score=128.73 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh----HHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH----AKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h----A~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
+++++||+||.++. +.+.+ +.+...|+++|+++.+..+..... ...++.+... ..+|.||++|||||+++++
T Consensus 5 mkki~ii~np~~~~--~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GGDGT~l~a~ 80 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTH-EMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGGDGNMLGAA 80 (292)
T ss_dssp CCEEEEECC---------CHH-HHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSCHHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcCcHHHHHHH
Confidence 58899999998643 33445 467789999999887655431110 0000011111 1379999999999999999
Q ss_pred HHHHcCCCCCCCCCcc-EEEeecCCcchhhhhhcCCCChHHHHHHHHhCce
Q 003866 354 NGLLSRGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (790)
Q Consensus 354 NGL~~r~d~~~~~~iP-LGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~ 403 (790)
+++... ++| ||| |+||.|.|+. +++.++.+++..|++|..
T Consensus 81 ~~~~~~-------~~P~lGI-~~Gt~gfla~--~~~~~~~~al~~i~~g~~ 121 (292)
T 2an1_A 81 RTLARY-------DINVIGI-NRGNLGFLTD--LDPDNALQQLSDVLEGRY 121 (292)
T ss_dssp HHHTTS-------SCEEEEB-CSSSCCSSCC--BCTTSHHHHHHHHHTTCE
T ss_pred HHhhcC-------CCCEEEE-ECCCcccCCc--CCHHHHHHHHHHHHcCCC
Confidence 999765 245 666 8999888875 357889999999999986
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=98.95 E-value=1.8e-09 Score=112.84 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+|++||+||.+|++ +.+.. +.+...|+ ++++ . +. + +. ....+|.||++|||||++++++++..
T Consensus 1 mki~ii~Np~~~~~-~~~~~-~~i~~~l~--~~~~--~-~~---~------~~-~~~~~D~vv~~GGDGTll~~a~~~~~ 63 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLK-EKISKEHE--VIEF--G-EA---N------AP-GRVTADLIVVVGGDGTVLKAAKKAAD 63 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHH-HHHTTTSE--EEEE--E-ES---S------SC-SCBCCSEEEEEECHHHHHHHHTTBCT
T ss_pred CEEEEEEeCCCchH-HHHHH-HHHHHHhc--CCce--e-cc---c------cc-ccCCCCEEEEEeCcHHHHHHHHHhCC
Confidence 47999999999986 65544 34444444 3332 2 21 2 11 12347999999999999999999865
Q ss_pred CCCCCCCCCcc-EEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 359 RGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 359 r~d~~~~~~iP-LGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
. +| ||| ++||.|.|+ . +.+.++.+++..+++|..+
T Consensus 64 -~-------~PilGI-n~G~~Gfl~-~-~~~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 64 -G-------TPMVGF-KAGRLGFLT-S-YTLDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp -T-------CEEEEE-ESSSCCSSC-C-BCGGGHHHHHHHHHTTCCE
T ss_pred -C-------CCEEEE-ECCCCCccC-c-CCHHHHHHHHHHHHcCCce
Confidence 2 45 777 599996666 4 5678889999999999764
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=98.95 E-value=1.6e-09 Score=115.97 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh----------------HHHHHHHhhhcCCCCce
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH----------------AKNLASTVDISSCPDGI 340 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h----------------A~ela~~~~~~~~~D~I 340 (790)
.+++++||+||.++. +.+.+ +.+...|+++|+++.+..+..... +..+.+.......+|.|
T Consensus 3 ~m~ki~iI~n~~~~~--~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~v 79 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDE--ATETA-RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELV 79 (307)
T ss_dssp --CEEEEEESSSGGG--GSHHH-HHHHHHHHTTTCEEEEEC-----------------------------------CCCE
T ss_pred CCCEEEEEEeCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEE
Confidence 368899999998864 33445 467789999999887766654321 12121110122347999
Q ss_pred EEEeCchHHHHHHHHHHcCCCCCCCCCcc-EEEeecCCcchhhhhhcCCCChHHHHHHHHhCceeE
Q 003866 341 ICVGGDGIINEVLNGLLSRGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTA 405 (790)
Q Consensus 341 VvvGGDGTlnEVlNGL~~r~d~~~~~~iP-LGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~~ 405 (790)
|++|||||++++++.+... .+| || |++||.|.|+. +.+.++.+++..|++|..+.
T Consensus 80 i~~GGDGT~l~a~~~~~~~-------~~pvlg-i~~G~~gfl~~--~~~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 80 LVLGGDGTFLRAAELARNA-------SIPVLG-VNLGRIGFLAE--AEAEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEEECHHHHHHHHHHHHHH-------TCCEEE-EECSSCCSSCS--EEGGGHHHHHHHHHHTCCEE
T ss_pred EEEeCCHHHHHHHHHhccC-------CCCEEE-EeCCCCccCcc--cCHHHHHHHHHHHHcCCcEE
Confidence 9999999999999999865 355 66 58999998884 35678889999999997653
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=98.69 E-value=3.3e-08 Score=103.97 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=71.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHc
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~ 358 (790)
+++.||+||. .++.+.+ +.+...|+++|++++ ..++|.||++|||||+.++++.+..
T Consensus 1 mki~ii~n~~---~~~~~~~-~~l~~~l~~~g~~v~-------------------~~~~D~vv~lGGDGT~l~aa~~~~~ 57 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLR-LNMIAGFGEYDMEYD-------------------DVEPEIVISIGGDGTFLSAFHQYEE 57 (272)
T ss_dssp CEEEEEECCS---HHHHHHH-HHHHHHHTTSSCEEC-------------------SSSCSEEEEEESHHHHHHHHHHTGG
T ss_pred CEEEEEECCC---HHHHHHH-HHHHHHHHHCCCEeC-------------------CCCCCEEEEEcCcHHHHHHHHHHhh
Confidence 4789999963 3444555 467788999998761 1247999999999999999999976
Q ss_pred CCCCCCCCCcc-EEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 359 RGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 359 r~d~~~~~~iP-LGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.. .++| ||| |+|| |+|+.. +.+.++.+++..|++|..+
T Consensus 58 ~~-----~~~PilGI-n~G~-lgfl~~-~~~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 58 RL-----DEIAFIGI-HTGH-LGFYAD-WRPAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp GT-----TTCEEEEE-ESSS-CCSSCC-BCGGGHHHHHHHHHTTCCE
T ss_pred cC-----CCCCEEEE-eCCC-CCcCCc-CCHHHHHHHHHHHHcCCCE
Confidence 41 1367 665 9999 557765 5677888899999999764
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.91 E-value=1.8e-05 Score=87.58 Aligned_cols=115 Identities=12% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHh--------------------hhcC
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTV--------------------DISS 335 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~--------------------~~~~ 335 (790)
..+++++||.||.. ..+.+.+ ..+...|.+++..++++..+.. +.++...+ ....
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~-~~l~~~L~~~~~gi~V~ve~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAM-VEFITHLHESYPEVNVIVQPDV--AEEISQDFKSPLENDPNRPHILYTGPEQDIVN 113 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHH-HHHHHHHHHHCTTCEEECCHHH--HHHHHTTCCSCGGGCTTSCEEEEECCHHHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHH-HHHHHHHHHhCCCeEEEEeCch--hhhhhhhccccccccccccccccccchhhccc
Confidence 35789999999874 3444555 4566788887323334433222 22221000 0011
Q ss_pred CCCceEEEeCchHHHHHHHHHHcCCCCCCCCCc-cEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 336 CPDGIICVGGDGIINEVLNGLLSRGNQKEGISI-PIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 336 ~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~i-PLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.+|.||++|||||+..++..+... .+ |+-=|++||-+-|+. +.+.+..+++..+++|...
T Consensus 114 ~~DlVIvlGGDGTlL~aa~~~~~~-------~vpPiLGIN~G~lGFLt~--~~~~~~~~al~~il~g~~~ 174 (388)
T 3afo_A 114 RTDLLVTLGGDGTILHGVSMFGNT-------QVPPVLAFALGTLGFLSP--FDFKEHKKVFQEVISSRAK 174 (388)
T ss_dssp HCSEEEEEESHHHHHHHHHTTTTS-------CCCCEEEEECSSCCSSCC--EEGGGHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHhccc-------CCCeEEEEECCCcccCCc--CChHHHHHHHHHHhcCCce
Confidence 369999999999999999988654 24 444459999866653 4566788899999999754
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.58 E-value=0.0079 Score=63.73 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
.+|+.||.|+..- . +.+...|+++|+++.+.. .... .+ ...|.||++|||||+-.++..+.
T Consensus 29 ~mki~iv~~~~~~-------~-~~l~~~L~~~g~~v~~~~-~~~~-------~~---~~~DlvIvlGGDGT~L~aa~~~~ 89 (278)
T 1z0s_A 29 GMRAAVVYKTDGH-------V-KRIEEALKRLEVEVELFN-QPSE-------EL---ENFDFIVSVGGDGTILRILQKLK 89 (278)
T ss_dssp -CEEEEEESSSTT-------H-HHHHHHHHHTTCEEEEES-SCCG-------GG---GGSSEEEEEECHHHHHHHHTTCS
T ss_pred ceEEEEEeCCcHH-------H-HHHHHHHHHCCCEEEEcc-cccc-------cc---CCCCEEEEECCCHHHHHHHHHhC
Confidence 4679999998654 2 356778999998775432 1111 11 13699999999999988886653
Q ss_pred cCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHh
Q 003866 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVK 400 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~Ilk 400 (790)
. . +|+--|..|+-+-|+. ..+.+..+++..+++
T Consensus 90 ~-------~-~PilGIN~G~lGFLt~--~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 90 R-------C-PPIFGINTGRVGLLTH--ASPENFEVELKKAVE 122 (278)
T ss_dssp S-------C-CCEEEEECSSSCTTCC--BBTTBCHHHHHHHHH
T ss_pred C-------C-CcEEEECCCCCccccc--cCHHHHHHHHHHHHh
Confidence 2 2 6777788897666663 445677778887776
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=95.11 E-value=0.078 Score=58.18 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHH---------Hh--------hhcCCCC
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLAS---------TV--------DISSCPD 338 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~---------~~--------~~~~~~D 338 (790)
..+++++||--|..- .....+ ..+...|...|+++-+. .....+. .+.. .. +..+.+|
T Consensus 36 ~~~k~I~iv~K~~~~--~~~~~~-~~l~~~L~~~~~~V~ve-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 36 KSPKSVLVIKKMRDA--SLLQPF-KELCTHLMEENMIVYVE-KKVLEDP-AIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp SCCCEEEEEECTTCG--GGHHHH-HHHHHHHHHTSCEEEEE-HHHHHSH-HHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred CCCCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEe-hHHhhhh-ccccccccccccccccccccChhhcccCCC
Confidence 468899999887653 333445 35666788888765332 1111110 1110 00 1123479
Q ss_pred ceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhhhcCCCChHHHHHHHHhCcee
Q 003866 339 GIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (790)
Q Consensus 339 ~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsllG~~dp~~Aa~~IlkG~~~ 404 (790)
.||++|||||+-.++..+... .+|+-=|-.|+--=|+ -....+..+++..+++|...
T Consensus 111 lvI~lGGDGT~L~aa~~~~~~-------~~PvlGiN~G~LGFLt--~~~~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 111 FIICLGGDGTLLYASSLFQGS-------VPPVMAFHLGSLGFLT--PFSFENFQSQVTQVIEGNAA 167 (365)
T ss_dssp EEEEESSTTHHHHHHHHCSSS-------CCCEEEEESSSCTTTC--CEESTTHHHHHHHHHHSCCB
T ss_pred EEEEEcChHHHHHHHHHhccC-------CCCEEEEcCCCCccce--eecHHHHHHHHHHHHcCCCe
Confidence 999999999999998876443 4676555566422222 13446788899999999754
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=87.17 E-value=3.4 Score=44.78 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=58.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-e-C--CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-T-T--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~-T-e--~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+-...+ .+ +.+...|+.+|+++.++. . . ......++++.+.. ...|.||++|| |++..+.-
T Consensus 41 ~~~liVtd~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIavGG-Gsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNG--SL-DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRN-DSFDFVVGLGG-GSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSS--HH-HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTT-SCCSEEEEEES-HHHHHHHH
T ss_pred CEEEEEECchHHhhcc--HH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHH
Confidence 7899999875533221 23 567788999999876653 1 1 22344455555533 34799999998 67777666
Q ss_pred HHHcCC------CCC------CCCCccEEEeec--CCc
Q 003866 355 GLLSRG------NQK------EGISIPIGIIPA--GSD 378 (790)
Q Consensus 355 GL~~r~------d~~------~~~~iPLGIIPa--GTG 378 (790)
.+...- -|+ ....+|+..||. |||
T Consensus 116 ~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 116 AVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp HHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred HHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 554320 000 003689999997 444
No 12
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=81.47 E-value=2.7 Score=45.06 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eCCch--hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TTSAG--HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~-Te~~~--hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||..+..-+ .+.+.+...|+.+|+++.++. ...+. ...++ +.+ .+...|.||++|| |++..+.-.
T Consensus 35 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~d~IIavGG-Gsv~D~aK~ 106 (354)
T 3ce9_A 35 KRVSLYFGEGIYE-----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFK-IPAEVDALIGIGG-GKAIDAVKY 106 (354)
T ss_dssp SEEEEEEETTHHH-----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTT-SCTTCCEEEEEES-HHHHHHHHH
T ss_pred CeEEEEECccHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHh-hhcCCCEEEEECC-hHHHHHHHH
Confidence 6899999876532 233678889999999887665 33332 23333 333 3345799999998 788887777
Q ss_pred HHcCCCCCCCCCccEEEeec
Q 003866 356 LLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa 375 (790)
+.-. ..+|+..||.
T Consensus 107 vA~~------~~~p~i~IPT 120 (354)
T 3ce9_A 107 MAFL------RKLPFISVPT 120 (354)
T ss_dssp HHHH------HTCCEEEEES
T ss_pred HHhh------cCCCEEEecC
Confidence 6532 2589999997
No 13
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=80.59 E-value=4.8 Score=44.21 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--C--chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+-... ..+ +.+...|+.+|+++.++.-- . .....++++.+.. .++|.||++|| |++-.+.-
T Consensus 44 ~r~liVtd~~~~~~~--g~~-~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN--GVY-DQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKK-EKVEAVLGVGG-GSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHS--SHH-HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHH-TTCSEEEEEES-HHHHHHHH
T ss_pred CeEEEEECchHHhhc--cHH-HHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-hhHHHHHH
Confidence 689999874332111 123 57788899999988655321 1 1234444454433 34799999998 77777766
Q ss_pred HHHcCC-----CCC-------CCCCccEEEeec
Q 003866 355 GLLSRG-----NQK-------EGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~-----d~~-------~~~~iPLGIIPa 375 (790)
.+...- -|+ ....+|+..||.
T Consensus 119 ~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 119 AVAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 654310 000 113689999997
No 14
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=79.80 E-value=7.7 Score=42.75 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------chhHHHHHHHhhhcCCC---CceEEEeCch
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AGHAKNLASTVDISSCP---DGIICVGGDG 347 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~------~~hA~ela~~~~~~~~~---D~IVvvGGDG 347 (790)
..+|++||.++...+ .+.+.+...|+.+|+++.++.-.. .....++++.+... +. |.||++|| |
T Consensus 61 ~~~rvlIVtd~~v~~-----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~-~~~R~d~IIAvGG-G 133 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP-----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEH-NYSRDVVVIALGG-G 133 (390)
T ss_dssp TTCEEEEEEETTTHH-----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHT-TCCTTCEEEEEES-H
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhc-CCCcCcEEEEECC-c
Confidence 457899999986542 244678889999999887654322 22344444444322 23 78999988 8
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 348 IINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 348 TlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.+..++-.+...- ...+|+..||.
T Consensus 134 sv~D~ak~~Aa~~----~rgip~I~IPT 157 (390)
T 3okf_A 134 VIGDLVGFAAACY----QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHhhHHHHHHHHh----cCCCCEEEeCC
Confidence 8888877664211 12589999996
No 15
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=79.38 E-value=7.8 Score=42.05 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCCCC-chhhHHHhHHHHHHHcCCeEEEEE--eCC--chhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 278 PPKMLVILNPRSGRGR-SSKVFHDIVEPIFKLAGFKLEVVK--TTS--AGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 278 pkrllVIINP~SGkG~-a~kv~~~~I~plL~~agi~~~v~~--Te~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
.+|++||..+...+.. + .+ +.+...|+.+|+++.++. ... .....++++.+.. .++|.||++|| |++..+
T Consensus 33 ~~~~livtd~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIavGG-Gsv~D~ 107 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDG--AV-DKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRR-EQCDIIVTVGG-GSPHDC 107 (387)
T ss_dssp CSEEEEECCTTTC--CCS--SH-HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHH-TTCCEEEEEES-HHHHHH
T ss_pred CCEEEEEECcchhhccch--HH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cchhhH
Confidence 3789999987664321 1 23 567788999999886542 111 1233444444433 34799999998 677776
Q ss_pred HHHHHcC---C--CCC-------CCCCccEEEeec--CCc
Q 003866 353 LNGLLSR---G--NQK-------EGISIPIGIIPA--GSD 378 (790)
Q Consensus 353 lNGL~~r---~--d~~-------~~~~iPLGIIPa--GTG 378 (790)
.-.+... + -|+ ....+|+..||. |||
T Consensus 108 aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 147 (387)
T 3bfj_A 108 GKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTA 147 (387)
T ss_dssp HHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCC
T ss_pred HHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 6655321 0 000 113689999997 554
No 16
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=75.80 E-value=17 Score=35.78 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC---chhHHHHHHHhhhcCCCCc-eEEEeCchHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPDG-IICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~---~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEV 352 (790)
...++.||. |......+. ++....|++.|++|++.+..- ++...++++++... ++++ |+++||.|-|--|
T Consensus 11 ~~P~V~Iim----GS~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aahLpgv 84 (173)
T 4grd_A 11 SAPLVGVLM----GSSSDWDVM-KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARER-GLRAIIAGAGGAAHLPGM 84 (173)
T ss_dssp SSCSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTT-TCSEEEEEEESSCCHHHH
T ss_pred CCCeEEEEe----CcHhHHHHH-HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhc-CCeEEEEeccccccchhh
Confidence 345677776 444445556 456679999999999877633 34566777776543 4564 5667999999999
Q ss_pred HHHHHc
Q 003866 353 LNGLLS 358 (790)
Q Consensus 353 lNGL~~ 358 (790)
+-++..
T Consensus 85 vA~~t~ 90 (173)
T 4grd_A 85 LAAKTT 90 (173)
T ss_dssp HHHHCC
T ss_pred heecCC
Confidence 999854
No 17
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=75.11 E-value=6.7 Score=42.77 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~T--e~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+.-- ....+ +.+...|+.+|+++.++.- ..+ ....++++.+... +.|.||++|| |++..+.
T Consensus 31 ~~~~liVtd~~~~---~~g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-Gsv~D~a 104 (383)
T 3ox4_A 31 FKNALIVSDAFMN---KSGVV-KQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDN-NSDFVISLGG-GSPHDCA 104 (383)
T ss_dssp CCEEEEEEEHHHH---HTTHH-HHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHH-TCSEEEEEES-HHHHHHH
T ss_pred CCEEEEEECCchh---hCchH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc-CcCEEEEeCC-cHHHHHH
Confidence 4789999876321 11123 5788899999998866531 122 2334444444332 4799999999 7777776
Q ss_pred HHHHc---CCC--CC-------CCCCccEEEeec
Q 003866 354 NGLLS---RGN--QK-------EGISIPIGIIPA 375 (790)
Q Consensus 354 NGL~~---r~d--~~-------~~~~iPLGIIPa 375 (790)
-.+.. .+. |. ....+|+..||.
T Consensus 105 K~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 138 (383)
T 3ox4_A 105 KAIALVATNGGEVKDYEGIDKSKKPALPLMSINT 138 (383)
T ss_dssp HHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEEC
T ss_pred HHHHHHHhCCCCHHHHhcccccccCCCCEEEEeC
Confidence 65432 110 00 022589999997
No 18
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=74.75 E-value=2.2 Score=46.11 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-e-CCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-T-TSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~-T-e~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||.++..-+ ... +.+...|+.+|+++.+.. . +... ...++++.+.. .+.|.||++|| |++..+.-.
T Consensus 32 ~~~livtd~~~~~----~~~-~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~-~~~d~IIavGG-Gsv~D~aK~ 104 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAG-HTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARK-AEAAIVIGVGG-GKTLDTAKA 104 (370)
T ss_dssp SEEEEEECHHHHH----HTH-HHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHH-TTCSEEEEEES-HHHHHHHHH
T ss_pred CeEEEEEChHHHH----HHH-HHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHHH
Confidence 7899999875532 123 577888998998874222 1 1121 33344444332 34799999999 788887777
Q ss_pred HHcCCCCCCCCCccEEEeec
Q 003866 356 LLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa 375 (790)
+... ..+|+..||.
T Consensus 105 iA~~------~~~p~i~IPT 118 (370)
T 1jq5_A 105 VADE------LDAYIVIVPT 118 (370)
T ss_dssp HHHH------HTCEEEEEES
T ss_pred HHHh------cCCCEEEecc
Confidence 6532 2589999997
No 19
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=70.08 E-value=4.4 Score=43.97 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--C--chhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+...+. ..+ +.+...|+.+|+++.++.-- . .....++++.+... ++|.||++|| |++..+.
T Consensus 31 ~~~~livtd~~~~~~---g~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGG-Gsv~D~a 104 (386)
T 1rrm_A 31 YQKALIVTDKTLVQC---GVV-AKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNS-GADYLIAIGG-GSPQDTC 104 (386)
T ss_dssp CCEEEEECBHHHHHT---THH-HHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHH-TCSEEEEEES-HHHHHHH
T ss_pred CCEEEEEECcchhhc---hHH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc-CcCEEEEeCC-hHHHHHH
Confidence 368999987543211 123 57888999999987655321 1 12344455544332 4699999999 7777766
Q ss_pred HHHHcC---CC----CC-------CCCCccEEEeec--CCc
Q 003866 354 NGLLSR---GN----QK-------EGISIPIGIIPA--GSD 378 (790)
Q Consensus 354 NGL~~r---~d----~~-------~~~~iPLGIIPa--GTG 378 (790)
-.+... +. |+ ....+|+..||. |||
T Consensus 105 K~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 145 (386)
T 1rrm_A 105 KAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTA 145 (386)
T ss_dssp HHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCC
T ss_pred HHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCch
Confidence 554321 10 00 023689999997 544
No 20
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=69.12 E-value=4.7 Score=44.22 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-c--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-A--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||..+..-+ . +.+.+...|+. |+++.+..... + ....++++.+... +.|.||++|| |++..+.-.
T Consensus 53 ~r~liVtd~~~~~----~-~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGG-Gs~~D~AK~ 124 (387)
T 3uhj_A 53 KRALVLIDRVLFD----A-LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEH-GSDILVGVGG-GKTADTAKI 124 (387)
T ss_dssp SEEEEEECTTTHH----H-HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHH-TCSEEEEESS-HHHHHHHHH
T ss_pred CEEEEEECchHHH----H-HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhc-CCCEEEEeCC-cHHHHHHHH
Confidence 7899999876642 2 33677888998 98872222211 1 2233344443322 4799999999 888888877
Q ss_pred HHcCCCCCCCCCccEEEeec
Q 003866 356 LLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa 375 (790)
+.-. ..+|+..||.
T Consensus 125 iA~~------~~~p~i~IPT 138 (387)
T 3uhj_A 125 VAID------TGARIVIAPT 138 (387)
T ss_dssp HHHH------TTCEEEECCS
T ss_pred HHHh------cCCCEEEecC
Confidence 7543 2589999997
No 21
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=68.57 E-value=5.7 Score=44.45 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=53.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE-EEeCC-ch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV-VKTTS-AG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v-~~Te~-~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+|++||..+..-+ ..+ +.+...|+.+|+++.+ ..... .. ...++++.+. + ..|.||++|| |++..+.-.
T Consensus 92 ~rvlIVtd~~~~~----~~~-~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~-~-~~D~IIAvGG-GSviD~AK~ 163 (450)
T 1ta9_A 92 KSAVVLADQNVWN----ICA-NKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCP-D-DTQVIIGVGG-GKTMDSAKY 163 (450)
T ss_dssp SEEEEEEEHHHHH----HTH-HHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSC-T-TCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECccHHH----HHH-HHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHh-h-CCCEEEEeCC-cHHHHHHHH
Confidence 4899998865432 123 5778889999988742 22222 22 2233333332 3 5799999998 788888777
Q ss_pred HHcCCCCCCCCCccEEEeec
Q 003866 356 LLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPa 375 (790)
+.-. ..+|+..||.
T Consensus 164 iA~~------~giP~I~IPT 177 (450)
T 1ta9_A 164 IAHS------MNLPSIICPT 177 (450)
T ss_dssp HHHH------TTCCEEEEES
T ss_pred HHHh------cCCCEEEEeC
Confidence 6532 2589999997
No 22
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=68.43 E-value=14 Score=40.38 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc------CCeEEEEEe-C-----CchhHHHHHHHhhhcCC--C---Cce
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA------GFKLEVVKT-T-----SAGHAKNLASTVDISSC--P---DGI 340 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~a------gi~~~v~~T-e-----~~~hA~ela~~~~~~~~--~---D~I 340 (790)
.+|++||.++... +.+.+.+...|+.+ ++++..+.. . ......++.+.+. +.+ . |.|
T Consensus 36 ~~k~liVtd~~v~-----~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~-~~~~~~~r~d~i 109 (393)
T 1sg6_A 36 STTYVLVTDTNIG-----SIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWML-SQNPPCGRDTVV 109 (393)
T ss_dssp CSEEEEEEEHHHH-----HHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHH-TSSSCCCTTCEE
T ss_pred CCeEEEEECCcHH-----HHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHH-HcCCCCCCCCEE
Confidence 4689999986432 22446777888877 777653322 2 1233344444443 233 4 899
Q ss_pred EEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeec--CCcchhh
Q 003866 341 ICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA--GSDNSLV 382 (790)
Q Consensus 341 VvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPa--GTGNdfA 382 (790)
|++|| |.+..++-.+...- ...+|+..||. ||+.+-+
T Consensus 110 IalGG-Gsv~D~ak~~Aa~~----~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 110 IALGG-GVIGDLTGFVASTY----MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EEEES-HHHHHHHHHHHHHG----GGCCEEEEEECSHHHHHTTT
T ss_pred EEECC-cHHHHHHHHHHHHh----cCCCCEEEECCchhhhhhcC
Confidence 99998 77777776655210 12589999998 7777763
No 23
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=64.94 E-value=9.6 Score=41.75 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te----~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.+-... ..+ +.+...|+ |+++.++.-. ......++++.+... ++|.||++|| |++-.+.-
T Consensus 51 ~r~liVtd~~~~~~~--g~~-~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-GsviD~AK 123 (408)
T 1oj7_A 51 ARVLITYGGGSVKKT--GVL-DQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQ-KVTFLLAVGG-GSVLDGTK 123 (408)
T ss_dssp CEEEEEECSSHHHHH--SHH-HHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHH-TCCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECCchhhhc--cHH-HHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHc-CCCEEEEeCC-chHHHHHH
Confidence 789999875432111 123 46666775 7777655322 112334444444332 4699999999 77777766
Q ss_pred HHHcC---CC----C--------CCCCCccEEEeec--CCc
Q 003866 355 GLLSR---GN----Q--------KEGISIPIGIIPA--GSD 378 (790)
Q Consensus 355 GL~~r---~d----~--------~~~~~iPLGIIPa--GTG 378 (790)
.+... +. | .....+|+..||. |||
T Consensus 124 ~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtg 164 (408)
T 1oj7_A 124 FIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATG 164 (408)
T ss_dssp HHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSC
T ss_pred HHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchh
Confidence 65432 10 0 0114589999997 554
No 24
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=63.75 E-value=16 Score=39.95 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc------hhHHHHHHHhhhc--CCCCceEEEeCchHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA------GHAKNLASTVDIS--SCPDGIICVGGDGIIN 350 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~------~hA~ela~~~~~~--~~~D~IVvvGGDGTln 350 (790)
+|++||.++.... .+ +.+...|+.+|+++.++.-... ....++.+.+... ...|.||++|| |.+.
T Consensus 44 ~rvlIVtd~~v~~-----~~-~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~ 116 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAAT 116 (368)
T ss_dssp SEEEEEECGGGHH-----HH-HHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CEEEEEECccHHH-----HH-HHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 7899999876432 34 5688899999998866543222 2334444433221 12589999999 7777
Q ss_pred HHHHHHHcCCCCCCCCCccEEEeec
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.+.-.+...- ...+|+..||.
T Consensus 117 D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 117 DVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCcEEEECC
Confidence 7776665221 12589999996
No 25
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=61.05 E-value=32 Score=33.59 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=51.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCC-ceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D-~IVvvGGDGTlnEVlN 354 (790)
+++.||. |......+. +++...|+..|++|++.+.. .++...++++++..+ +.+ .|+++||.+-|--|+-
T Consensus 4 ~~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 77 (163)
T 3ors_A 4 MKVAVIM----GSSSDWKIM-QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARER-GINIIIAGAGGAAHLPGMVA 77 (163)
T ss_dssp CCEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHH
T ss_pred CeEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhC-CCcEEEEECCchhhhHHHHH
Confidence 4466665 444444555 46677999999999988764 345566777776533 345 4567799999999999
Q ss_pred HHHc
Q 003866 355 GLLS 358 (790)
Q Consensus 355 GL~~ 358 (790)
++..
T Consensus 78 ~~t~ 81 (163)
T 3ors_A 78 SLTT 81 (163)
T ss_dssp HHCS
T ss_pred hccC
Confidence 9853
No 26
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=60.93 E-value=49 Score=32.63 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=52.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEV 352 (790)
+..++.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.++ |+++|+.+-|--|
T Consensus 11 m~~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa~AG~aa~Lpgv 84 (174)
T 3kuu_A 11 AGVKIAIVM----GSKSDWATM-QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEAN-GLHVIIAGNGGAAHLPGM 84 (174)
T ss_dssp CCCCEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTT-TCSEEEEEEESSCCHHHH
T ss_pred CCCcEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEECChhhhhHHH
Confidence 345677775 444444555 46677999999999988763 345667777776533 3454 5677999999999
Q ss_pred HHHHHc
Q 003866 353 LNGLLS 358 (790)
Q Consensus 353 lNGL~~ 358 (790)
+-++..
T Consensus 85 vA~~t~ 90 (174)
T 3kuu_A 85 LAAKTL 90 (174)
T ss_dssp HHHTCS
T ss_pred HHhccC
Confidence 999853
No 27
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=60.30 E-value=23 Score=30.82 Aligned_cols=58 Identities=19% Similarity=0.391 Sum_probs=40.2
Q ss_pred eeeecceeeecc--------cccCCcceEEEEecCCcceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHH
Q 003866 162 AKLTSKALVWGS--------HVLPLDDIVSVSYNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQW 233 (790)
Q Consensus 162 ~~~~~~~~~~~~--------~~l~l~dv~~~~~~~~~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W 233 (790)
..|+...|.|.+ ..|.|.++..|.... ...|.|. . ..++|.|.+++.+++++|
T Consensus 30 fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~-~~~F~i~--~----------------~~r~~~l~a~s~~e~~~W 90 (115)
T 2cod_A 30 VKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG-DNKFEVV--T----------------TQRTFVFRVEKEEERNDW 90 (115)
T ss_dssp EEECSSEEEEEESSCCSSCCCEEETTTEEEEEEET-TTEEEEE--E----------------SSCCEEEECSSHHHHHHH
T ss_pred EEEECCEEEEEcCCCCcccCCEEECCcceEEEeCC-CCEEEEE--e----------------CCcEEEEECCCHHHHHHH
Confidence 445555666653 357888887766544 3456665 1 124689999999999999
Q ss_pred Hhhhh
Q 003866 234 VGGFA 238 (790)
Q Consensus 234 ~~~~~ 238 (790)
+++|.
T Consensus 91 i~~l~ 95 (115)
T 2cod_A 91 ISILL 95 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99995
No 28
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=59.68 E-value=13 Score=32.79 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=39.1
Q ss_pred eeeecceeeecc--------cccCCcceEEEEecC------CcceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCH
Q 003866 162 AKLTSKALVWGS--------HVLPLDDIVSVSYNN------GLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (790)
Q Consensus 162 ~~~~~~~~~~~~--------~~l~l~dv~~~~~~~------~~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~ 227 (790)
..|+...|.|.+ ..|.|.++..|.... ....|.|.. ..++|.|.+++.
T Consensus 35 fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~------------------~~r~~~l~a~s~ 96 (125)
T 1eaz_A 35 FQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVT------------------TSRTFYVQADSP 96 (125)
T ss_dssp EEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEEC------------------SSCEEEEECSSH
T ss_pred EEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEe------------------CCcEEEEEcCCH
Confidence 345555666653 267788876665421 234466652 124699999999
Q ss_pred HHHHHHHhhhh
Q 003866 228 EEAIQWVGGFA 238 (790)
Q Consensus 228 ~~a~~W~~~~~ 238 (790)
+++++|+++|.
T Consensus 97 ~e~~~W~~al~ 107 (125)
T 1eaz_A 97 EEMHSWIKAVS 107 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 29
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=59.48 E-value=11 Score=40.67 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--Cc--hhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~~--~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+.. . ..+ +++...|+..+ +.++.-. ++ ....++++.+.. .+.|.||++|| |++..+.
T Consensus 34 ~~r~liVtd~~~----~-~~~-~~v~~~L~~~~--~~v~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-Gs~iD~a 103 (353)
T 3hl0_A 34 LSRALVLSTPQQ----K-GDA-EALASRLGRLA--AGVFSEAAMHTPVEVTKTAVEAYRA-AGADCVVSLGG-GSTTGLG 103 (353)
T ss_dssp CCCEEEECCGGG----H-HHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHH-TTCSEEEEEES-HHHHHHH
T ss_pred CCEEEEEecCch----h-hHH-HHHHHHHhhCC--cEEecCcCCCCcHHHHHHHHHHHhc-cCCCEEEEeCC-cHHHHHH
Confidence 468999987642 2 233 56777887654 4433211 11 233444444433 34799999999 8888888
Q ss_pred HHHHcCCCCCCCCCccEEEeec
Q 003866 354 NGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIPa 375 (790)
-.+... ..+|+..||.
T Consensus 104 K~iA~~------~~~p~i~IPT 119 (353)
T 3hl0_A 104 KAIALR------TDAAQIVIPT 119 (353)
T ss_dssp HHHHHH------HCCEEEEEEC
T ss_pred HHHHhc------cCCCEEEEeC
Confidence 777543 2589999997
No 30
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=58.40 E-value=18 Score=31.27 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.+++++|+++|.
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~ 107 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQ 107 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 578999999999999999994
No 31
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=56.65 E-value=52 Score=35.47 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc------hhHHHHHHHhhhcC--CCCceEEEeCchHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA------GHAKNLASTVDISS--CPDGIICVGGDGII 349 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~------~hA~ela~~~~~~~--~~D~IVvvGGDGTl 349 (790)
.+|++||.++...+ .+.+.+...|+.+ +++.++.-... ....++.+.+...+ ..|.||++|| |.+
T Consensus 34 ~~k~liVtd~~v~~-----~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv 106 (368)
T 2gru_A 34 FDQYIMISDSGVPD-----SIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLT 106 (368)
T ss_dssp CSEEEEEEETTSCH-----HHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHH
T ss_pred CCEEEEEECCcHHH-----HHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHH
Confidence 47999999986642 2346777788776 66644332221 22333333332211 2589999998 888
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..+.-.+...- ...+|+..||.
T Consensus 107 ~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 107 GNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----cCCCCEEEECC
Confidence 88877665321 12589999997
No 32
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=55.71 E-value=43 Score=33.03 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCC-ceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D-~IVvvGGDGTlnEVlN 354 (790)
.++.||. |......+. +++...|+..|++|++.+.. .++...++++++.... .+ .|+++||.+-|--|+-
T Consensus 8 ~~V~Iim----gS~SD~~v~-~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g-~~ViIa~AG~aa~LpgvvA 81 (174)
T 3lp6_A 8 PRVGVIM----GSDSDWPVM-ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARG-LEVIIAGAGGAAHLPGMVA 81 (174)
T ss_dssp CSEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHT-CCEEEEEEESSCCHHHHHH
T ss_pred CeEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCC-CCEEEEecCchhhhHHHHH
Confidence 4577775 444444555 46677999999999988763 3456677777765433 45 4567799999999999
Q ss_pred HHHc
Q 003866 355 GLLS 358 (790)
Q Consensus 355 GL~~ 358 (790)
++..
T Consensus 82 ~~t~ 85 (174)
T 3lp6_A 82 AATP 85 (174)
T ss_dssp HHCS
T ss_pred hccC
Confidence 9853
No 33
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=55.47 E-value=20 Score=38.75 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----chhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~----~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.+|++||..+.. ...+ +++...|+..+ +.++.-.. .....++++.+... +.|.||++|| |++..+.
T Consensus 36 ~~r~liVtd~~~-----~~~~-~~v~~~L~~~~--~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-GsviD~a 105 (358)
T 3jzd_A 36 AKRALVLCTPNQ-----QAEA-ERIADLLGPLS--AGVYAGAVMHVPIESARDATARAREA-GADCAVAVGG-GSTTGLG 105 (358)
T ss_dssp CSCEEEECCGGG-----HHHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHH-TCSEEEEEES-HHHHHHH
T ss_pred CCeEEEEeCCcH-----HHHH-HHHHHHhccCC--EEEecCCcCCCCHHHHHHHHHHhhcc-CCCEEEEeCC-cHHHHHH
Confidence 368999987642 2333 56777887663 44432211 12334444444332 4799999999 8888888
Q ss_pred HHHHcCCCCCCCCCccEEEeec
Q 003866 354 NGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIPa 375 (790)
-.+... ..+|+..||.
T Consensus 106 K~iA~~------~~~p~i~IPT 121 (358)
T 3jzd_A 106 KAIALE------TGMPIVAIPT 121 (358)
T ss_dssp HHHHHH------HCCCEEEEEC
T ss_pred HHHHhc------cCCCEEEEeC
Confidence 777543 2589999997
No 34
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=55.20 E-value=64 Score=33.26 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred CeEEEEEcCCCCC-CCchhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhc-CCCCceEEEeCchHHHHHHHH
Q 003866 279 PKMLVILNPRSGR-GRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDIS-SCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGk-G~a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~-~~~D~IVvvGGDGTlnEVlNG 355 (790)
+++.|| .|.... .-...++ +-++..+++.|+++.+..+..... ..+.++.+... ..+|+||+++-+....+++..
T Consensus 4 ~~Ig~i-~p~~~~~~f~~~~~-~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~ 81 (350)
T 3h75_A 4 TSVVFL-NPGNSTETFWVSYS-QFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL 81 (350)
T ss_dssp CEEEEE-ECSCTTCHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH
T ss_pred CEEEEE-CCCCCCChHHHHHH-HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH
Confidence 445544 454432 1122333 467778888899888776654322 13344555432 358999999744566677777
Q ss_pred HHcCCCCCCCCCccEEEeecCC
Q 003866 356 LLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPaGT 377 (790)
+... .+|+-.+-...
T Consensus 82 ~~~~-------giPvV~~~~~~ 96 (350)
T 3h75_A 82 SQGS-------GIKLFIVNSPL 96 (350)
T ss_dssp HTTS-------CCEEEEEESCC
T ss_pred HHhC-------CCcEEEEcCCC
Confidence 6544 47777665443
No 35
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.64 E-value=69 Score=31.64 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+.+.||+.-. ...-...++ ..++..+++.|+.+.+..+.... ...++.+.+. ...+|+||+.+.+. .+.+..
T Consensus 6 ~s~~Igvi~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 6 SSKLIAVIVANI-DDYFSTELF-KGISSILESRGYIGVLFDANADIEREKTLLRAIG-SRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCEEEEEESCT-TSHHHHHHH-HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHH-TTTCSEEEEESSCC--HHHHHH
T ss_pred CCcEEEEEeCCC-CchHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCc--HHHHHH
Confidence 556677776433 221222333 46777888899988887765432 2234555554 34589999999988 777777
Q ss_pred HHcCCCCCCCCCccEEEee
Q 003866 356 LLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIP 374 (790)
|... .+|+-++-
T Consensus 81 l~~~-------~iPvV~i~ 92 (276)
T 3jy6_A 81 ILHQ-------QMPVVSVD 92 (276)
T ss_dssp HHTT-------SSCEEEES
T ss_pred HHHC-------CCCEEEEe
Confidence 7654 47776663
No 36
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=53.58 E-value=50 Score=32.77 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=54.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHH-HHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGII-NEVL 353 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTl-nEVl 353 (790)
++.+++.||+...+. .-...++ .-++..+++.|+++.+..+.... ...+..+.+.. ..+|+||+.+.+... .+++
T Consensus 6 ~~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~ 82 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKH-EFAQRLI-NAFKAEAKANKYEALVATSQNSRISEREQILEFVH-LKVDAIFITTLDDVYIGSAI 82 (293)
T ss_dssp ---CEEEEEESCSCS-HHHHHHH-HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH-TTCSEEEEECSCTTTTHHHH
T ss_pred CCCcEEEEEEecCCc-HHHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHHHH
Confidence 355677777754322 1122333 46777888899988877765432 23345555543 458999999887654 4677
Q ss_pred HHHHcCCCCCCCCCccEEEeec
Q 003866 354 NGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIPa 375 (790)
..+... .+|+-++-.
T Consensus 83 ~~~~~~-------~iPvV~~~~ 97 (293)
T 3l6u_A 83 EEAKKA-------GIPVFAIDR 97 (293)
T ss_dssp HHHHHT-------TCCEEEESS
T ss_pred HHHHHc-------CCCEEEecC
Confidence 777655 477776643
No 37
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=51.14 E-value=36 Score=29.24 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.++|.|.+++.+++.+|+++|.
T Consensus 78 ~~~~~~~a~s~~e~~~Wi~al~ 99 (109)
T 1wgq_A 78 MVFYVFKADDAHSTQRWIDAFQ 99 (109)
T ss_dssp EEEEEEECSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHH
Confidence 3579999999999999999995
No 38
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.45 E-value=25 Score=30.36 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.0
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.+++++|+.+|.
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~ 99 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIH 99 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 468999999999999999995
No 39
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=50.38 E-value=65 Score=32.19 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=50.8
Q ss_pred CCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 275 CKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 275 ~~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
.++.+.+.||+.-. ...-...++ .-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+ .+.+
T Consensus 13 ~~~s~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~~~~ 88 (289)
T 2fep_A 13 SKKTTTVGVIIPDI-SSIFYSELA-RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG-KQVDGIVFMGGNIT-DEHV 88 (289)
T ss_dssp ---CCEEEEEESCT-TSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCC-HHHH
T ss_pred cCCCCeEEEEeCCC-CCchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCCC-HHHH
Confidence 35667788888432 211112333 4567788889988877665432 223345555543 45899999987654 4556
Q ss_pred HHHHcCCCCCCCCCccEEEe
Q 003866 354 NGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGII 373 (790)
..|... .+|+-++
T Consensus 89 ~~l~~~-------~iPvV~~ 101 (289)
T 2fep_A 89 AEFKRS-------PVPIVLA 101 (289)
T ss_dssp HHHHHS-------SSCEEEE
T ss_pred HHHHhc-------CCCEEEE
Confidence 666543 4776665
No 40
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=49.99 E-value=40 Score=33.63 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=54.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+.-.+ ..-...++ ..++..+++.|+.+.++.+... ....++.+.+.. ..+|+||+.+.+. ..+.+.
T Consensus 6 ~~~~~Igvv~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~-~~~~~~ 81 (291)
T 3egc_A 6 KRSNVVGLIVSDIE-NVFFAEVA-SGVESEARHKGYSVLLANTAEDIVREREAVGQFFE-RRVDGLILAPSEG-EHDYLR 81 (291)
T ss_dssp -CCCEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCSS-CCHHHH
T ss_pred CCCcEEEEEECCCc-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCC-ChHHHH
Confidence 35667777774322 21122333 4677788889998888776543 233445555543 4589999999887 445555
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.+... .+|+-++-.
T Consensus 82 ~~~~~-------~iPvV~~~~ 95 (291)
T 3egc_A 82 TELPK-------TFPIVAVNR 95 (291)
T ss_dssp HSSCT-------TSCEEEESS
T ss_pred Hhhcc-------CCCEEEEec
Confidence 55433 577766643
No 41
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=49.56 E-value=33 Score=31.26 Aligned_cols=88 Identities=11% Similarity=0.237 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEe---Cc--hHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GD--GIINEVL 353 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvG---GD--GTlnEVl 353 (790)
++++||+=-.. |...++. +.+...|...|++++++....... .++ ...+|.||++. |+ |.+...+
T Consensus 2 ~ki~I~y~S~t--GnT~~~A-~~ia~~l~~~g~~v~~~~~~~~~~-----~~l--~~~~d~ii~g~pty~~~~G~~p~~~ 71 (148)
T 3f6r_A 2 SKVLIVFGSST--GNTESIA-QKLEELIAAGGHEVTLLNAADASA-----ENL--ADGYDAVLFGCSAWGMEDLEMQDDF 71 (148)
T ss_dssp CEEEEEEECSS--SHHHHHH-HHHHHHHHTTTCEEEEEETTTBCC-----TTT--TTTCSEEEEEECEECSSSCEECHHH
T ss_pred CeEEEEEECCC--chHHHHH-HHHHHHHHhCCCeEEEEehhhCCH-----hHh--cccCCEEEEEecccCCCCCCCcHHH
Confidence 57888885544 4555655 467778888898888776543210 111 10368776665 45 6666555
Q ss_pred HHHHcCCCCCCCCCccEEEeecC
Q 003866 354 NGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIPaG 376 (790)
..++..-........+++++-.|
T Consensus 72 ~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 72 LSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp HHHHTTGGGTCCTTCEEEEEEEE
T ss_pred HHHHHHhhccCCCCCEEEEEEeC
Confidence 55554311011235677777543
No 42
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=49.50 E-value=52 Score=32.23 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLNG 355 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlNG 355 (790)
++.||. |......+. +++...|+..|+.|++.+.. .++...++++++... +.++ |+++||.+-|--|+-+
T Consensus 7 ~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~aa~LpgvvA~ 80 (166)
T 3oow_A 7 QVGVIM----GSKSDWSTM-KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKER-GLKVIIAGAGGAAHLPGMVAA 80 (166)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEEECSSCCHHHHHHH
T ss_pred eEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhC-CCcEEEEECCcchhhHHHHHh
Confidence 566665 444444555 46677999999999988764 234567777776533 3464 5677999999999999
Q ss_pred HHc
Q 003866 356 LLS 358 (790)
Q Consensus 356 L~~ 358 (790)
+..
T Consensus 81 ~t~ 83 (166)
T 3oow_A 81 KTT 83 (166)
T ss_dssp TCS
T ss_pred ccC
Confidence 853
No 43
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=48.68 E-value=39 Score=36.17 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=46.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC------CchhHHHHHHHhhhcCCC---CceEEEeCchHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT------SAGHAKNLASTVDISSCP---DGIICVGGDGII 349 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te------~~~hA~ela~~~~~~~~~---D~IVvvGGDGTl 349 (790)
+|++||.++... +.+.+.+...| .+| ++.++.-. ......++++.+.. .+. |.||++|| |.+
T Consensus 32 ~~~liVtd~~~~-----~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~-~~~~r~d~iIavGG-Gsv 102 (354)
T 1xah_A 32 DQSFLLIDEYVN-----QYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILS-HHVTRNTAIIAVGG-GAT 102 (354)
T ss_dssp SCEEEEEEHHHH-----HHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHT-TCCCTTCEEEEEES-HHH
T ss_pred CeEEEEECCcHH-----HHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHH-cCCCCCceEEEECC-hHH
Confidence 789999986432 22445677778 777 44432222 12233444444432 234 89999998 788
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
..+.-.+...- ...+|+..||.
T Consensus 103 ~D~ak~vA~~~----~rgip~i~IPT 124 (354)
T 1xah_A 103 GDFAGFVAATL----LRGVHFIQVPT 124 (354)
T ss_dssp HHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----ccCCCEEEECC
Confidence 88777665211 12589999997
No 44
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=48.43 E-value=42 Score=29.52 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=39.0
Q ss_pred eeeecceeeecc--------cccCCcceEEEEecC--C-cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHH
Q 003866 162 AKLTSKALVWGS--------HVLPLDDIVSVSYNN--G-LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEA 230 (790)
Q Consensus 162 ~~~~~~~~~~~~--------~~l~l~dv~~~~~~~--~-~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a 230 (790)
..|+...|.|.+ ..|.|.++..|.... + ...|.|.. + .++|.|.+++.+++
T Consensus 39 fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~-~-----------------~r~~~l~a~s~~e~ 100 (126)
T 1fao_A 39 FTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVF-P-----------------FRTFYLCAKTGVEA 100 (126)
T ss_dssp EEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEE-T-----------------TEEEEEECSSHHHH
T ss_pred EEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEEe-C-----------------CcEEEEECCCHHHH
Confidence 344555555553 257777876655432 2 23477762 1 15799999999999
Q ss_pred HHHHhhhh
Q 003866 231 IQWVGGFA 238 (790)
Q Consensus 231 ~~W~~~~~ 238 (790)
+.|+.+|.
T Consensus 101 ~~Wi~al~ 108 (126)
T 1fao_A 101 DEWIKILR 108 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999995
No 45
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=48.07 E-value=89 Score=31.04 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=49.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+++.||+. .....-...++ .-++..+++.|+.+.+..+.... ...++.+.+. ...+|+||+++.+.+ .+.+..
T Consensus 7 ~~~~Igvi~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVS-NIANPFCAAVV-KGIEKTAEKNGYRILLCNTESDLARSRSCLTLLS-GKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp CCCEEEEEES-CTTSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHH-TTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeC-CCCCchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCC-hHHHHH
Confidence 5566777774 32221112333 45677788889888776654322 2234455553 345899999988754 355665
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|. . .+|+-.+
T Consensus 83 l~-~-------~iPvV~~ 92 (285)
T 3c3k_A 83 II-G-------AFPWVQC 92 (285)
T ss_dssp HH-T-------TSSEEEE
T ss_pred Hh-c-------CCCEEEE
Confidence 54 3 4776665
No 46
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=47.59 E-value=14 Score=31.06 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=19.0
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.+++++|+++|.
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq 90 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIE 90 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 468999999999999999984
No 47
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=46.53 E-value=1.1e+02 Score=26.92 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.0
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.+++++|+.+|.
T Consensus 96 ~~~~l~a~s~~e~~~Wi~al~ 116 (129)
T 1x05_A 96 VHYFLQAATPKERTEWIKAIQ 116 (129)
T ss_dssp CCCEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 468899999999999999995
No 48
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=46.19 E-value=60 Score=27.81 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=41.1
Q ss_pred eeeecceeeeccc--------ccCCcceEEEEecC---C--cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHH
Q 003866 162 AKLTSKALVWGSH--------VLPLDDIVSVSYNN---G--LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTE 228 (790)
Q Consensus 162 ~~~~~~~~~~~~~--------~l~l~dv~~~~~~~---~--~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~ 228 (790)
..|+...|.|.+. .|.|.++..+.... . ...|.|..- ... +-....++|.|.+++.+
T Consensus 29 fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~--~~~--------~~~~~~~~~~l~a~s~~ 98 (118)
T 1v89_A 29 FVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPA--SWD--------QNRMGQDSYVLMASSQA 98 (118)
T ss_dssp EEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEES--CCS--------SCCSSCCCEEEECSSHH
T ss_pred EEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECC--ccc--------cccCCCcEEEEECCCHH
Confidence 4456666666632 67888876554321 1 234666541 110 01123467889999999
Q ss_pred HHHHHHhhhh
Q 003866 229 EAIQWVGGFA 238 (790)
Q Consensus 229 ~a~~W~~~~~ 238 (790)
++++|+.+|.
T Consensus 99 e~~~Wi~al~ 108 (118)
T 1v89_A 99 EMEEWVKFLR 108 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999994
No 49
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=45.80 E-value=49 Score=33.06 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCCCeEEEEEcCCCCCCC-chhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGR-SSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~-a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
++.+.+.||+.-...... ...++ ..++..+++.|+.+.+..+..... ..++.+.+. ...+|+||+++.+..- +.+
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-~~~ 82 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMV-FGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILE-TGSADGVIISKIEPND-PRV 82 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHH-HHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHH-HTCCSEEEEESCCTTC-HHH
T ss_pred CCCCEEEEEecCCccccHHHHHHH-HHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHH-cCCccEEEEecCCCCc-HHH
Confidence 356677777754432111 22333 456777888888877766554332 233434332 2458999999876442 556
Q ss_pred HHHHcCCCCCCCCCccEEEee
Q 003866 354 NGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIP 374 (790)
..|... .+|+-++-
T Consensus 83 ~~l~~~-------~iPvV~i~ 96 (288)
T 3gv0_A 83 RFMTER-------NMPFVTHG 96 (288)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHhhC-------CCCEEEEC
Confidence 666554 46766553
No 50
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=45.70 E-value=63 Score=32.08 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=54.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeC----CchhHHHHHHHhhhcCCCCceEEEeCchH-H
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTT----SAGHAKNLASTVDISSCPDGIICVGGDGI-I 349 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~a-gi~~~v~~Te----~~~hA~ela~~~~~~~~~D~IVvvGGDGT-l 349 (790)
++.+++.||+.-.....-...++ .-++..+++. |+.+.+..+. ......++.+.+.. ..+|+||+++.|.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~ 83 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQ-KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE-EQPDGVMFAPTVPQYT 83 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHH-HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT-TCCSEEEECCSSGGGT
T ss_pred CCcceEEEEecCCCCchHHHHHH-HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEECCCChHHH
Confidence 35566777765541222222333 4677788888 8888877653 22222344555533 45899999998874 5
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 350 nEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.+++..+... .+|+-++-.
T Consensus 84 ~~~~~~~~~~-------~iPvV~~~~ 102 (304)
T 3gbv_A 84 KGFTDALNEL-------GIPYIYIDS 102 (304)
T ss_dssp HHHHHHHHHH-------TCCEEEESS
T ss_pred HHHHHHHHHC-------CCeEEEEeC
Confidence 6677777654 477766643
No 51
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=44.68 E-value=16 Score=39.12 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CchhHHHHHHHhhhcCCC---CceEEEeCchHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCP---DGIICVGGDGIIN 350 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te----~~~hA~ela~~~~~~~~~---D~IVvvGGDGTln 350 (790)
.+|++||.++...+. +.+.+...|+.+++.+.++... ......++++.+.. .+. |.||++|| |.+.
T Consensus 26 ~~~~livtd~~v~~~-----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~-~~~~r~d~iIavGG-Gsv~ 98 (343)
T 3clh_A 26 KQKALIISDSIVAGL-----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFE-MQLNRHSLMIALGG-GVIS 98 (343)
T ss_dssp SSCEEEEEEHHHHTT-----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHH-TTCCTTCEEEEEES-HHHH
T ss_pred CCEEEEEECCcHHHH-----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCCCceEEEECC-hHHH
Confidence 478999998765432 2245666665555444333221 12233444444432 234 89999998 7777
Q ss_pred HHHHHHHcCCCCCCCCCccEEEeec
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.+.-.+...- ...+|+..||.
T Consensus 99 D~ak~~A~~~----~rgip~i~IPT 119 (343)
T 3clh_A 99 DMVGFASSIY----FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCCEEEeCC
Confidence 7776665211 12589999995
No 52
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.66 E-value=1.1e+02 Score=30.02 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH----HHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI----INEVL 353 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT----lnEVl 353 (790)
+.+.||+.-.+. --...++ +.++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.|.. ..+++
T Consensus 16 ~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISD-YIFPSII-RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS-QHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSS-TTHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCc-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH-CCCCEEEEecccccccCCcHHHH
Confidence 667776654332 2223444 5678888999998888776543 223445555543 45899999998863 34666
Q ss_pred HHHHcCCCCCCCCCccEEEee
Q 003866 354 NGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIP 374 (790)
..|... .+|+-++-
T Consensus 93 ~~~~~~-------~iPvV~~~ 106 (298)
T 3tb6_A 93 LNLEKN-------GIPFAMIN 106 (298)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHhc-------CCCEEEEe
Confidence 777654 47776663
No 53
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=44.63 E-value=1.2e+02 Score=30.54 Aligned_cols=87 Identities=13% Similarity=0.020 Sum_probs=54.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL 356 (790)
+++.||+.-.+... ...++ +-++..+++.|+++.+..+.... ...++.+.+.. ..+|+||+.+-|.. +.+++..+
T Consensus 3 ~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLER-WQKDR-DIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSST-THHHH-HHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChH-HHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHHHHHH
Confidence 45666664333322 23444 56888899999988877664332 22344555533 35899999998875 36777777
Q ss_pred HcCCCCCCCCCccEEEeec
Q 003866 357 LSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPa 375 (790)
... .+|+-.+-.
T Consensus 80 ~~~-------~iPvV~~~~ 91 (313)
T 3m9w_A 80 KQE-------GIKVLAYDR 91 (313)
T ss_dssp HTT-------TCEEEEESS
T ss_pred HHC-------CCeEEEECC
Confidence 654 477766643
No 54
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=43.89 E-value=1.1e+02 Score=30.25 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=54.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCch-HHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDG-IINEVLN 354 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDG-TlnEVlN 354 (790)
+.+++.||+.-... .-...++ +.++..+++.|+++.+..+.... ...++.+.+.. ..+|+||+.+.|. ...+.+.
T Consensus 4 ~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 4 EGKTIGITAIGTDH-DWDLKAY-QAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA-QKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp TTCEEEEEESCCSS-HHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HCCSEEEEESSCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCC-hHHHHHH-HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHHHH
Confidence 45677777753321 1112333 46777888899988777665432 22344555433 3589999999985 4566777
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.+... .+|+-.+-.
T Consensus 81 ~~~~~-------~iPvV~~~~ 94 (291)
T 3l49_A 81 KINDA-------GIPLFTVDT 94 (291)
T ss_dssp HHHHT-------TCCEEEESC
T ss_pred HHHHC-------CCcEEEecC
Confidence 77665 477766643
No 55
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.74 E-value=1.3e+02 Score=30.81 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+.-.+ ..-...++ +.++..+++.|+.+.+..+... ....++.+.+. ...+|+||+++-+.+- +.+.
T Consensus 66 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdGiIi~~~~~~~-~~~~ 141 (344)
T 3kjx_A 66 NRVNLVAVIIPSLS-NMVFPEVL-TGINQVLEDTELQPVVGVTDYLPEKEEKVLYEML-SWRPSGVIIAGLEHSE-AARA 141 (344)
T ss_dssp SCCSEEEEEESCSS-SSSHHHHH-HHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCCH-HHHH
T ss_pred CCCCEEEEEeCCCC-cHHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEECCCCCH-HHHH
Confidence 34566777764332 22223444 4677788888988877766543 22334455553 3458999999877554 5566
Q ss_pred HHHcCCCCCCCCCccEEEe
Q 003866 355 GLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGII 373 (790)
.|... .+|+-++
T Consensus 142 ~l~~~-------~iPvV~i 153 (344)
T 3kjx_A 142 MLDAA-------GIPVVEI 153 (344)
T ss_dssp HHHHC-------SSCEEEE
T ss_pred HHHhC-------CCCEEEE
Confidence 66544 4777766
No 56
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=43.63 E-value=9.4 Score=41.32 Aligned_cols=84 Identities=14% Similarity=0.311 Sum_probs=50.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+|++||..+..-+. .+.+.+...|+.+|+.+.++.-+... ...++++.+. + ..|.||++|| |++..+.-.+.
T Consensus 42 ~~~liVtd~~~~~~----~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~-~-~~d~IIavGG-Gsv~D~aK~iA 114 (376)
T 1kq3_A 42 ERAFVVIDDFVDKN----VLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVE-E-ETDVVVGIGG-GKTLDTAKAVA 114 (376)
T ss_dssp SEEEEEECHHHHHH----TTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCC-T-TCCEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEECccHHhh----ccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHh-c-CCCEEEEeCC-cHHHHHHHHHH
Confidence 78999997643111 10134555666666555444323222 2333333332 3 5799999998 78888877776
Q ss_pred cCCCCCCCCCccEEEeec
Q 003866 358 SRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIPa 375 (790)
-. ..+|+..||.
T Consensus 115 ~~------~~~p~i~IPT 126 (376)
T 1kq3_A 115 YK------LKKPVVIVPT 126 (376)
T ss_dssp HH------TTCCEEEEES
T ss_pred Hh------cCCCEEEecC
Confidence 32 2589999997
No 57
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=43.56 E-value=50 Score=32.40 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCC-ceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D-~IVvvGGDGTlnEVlN 354 (790)
.++.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.+ .|+++|+.+-|--|+-
T Consensus 7 ~~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 80 (169)
T 3trh_A 7 IFVAILM----GSDSDLSTM-ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNR-GCAVFIAAAGLAAHLAGTIA 80 (169)
T ss_dssp CEEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHT-TEEEEEEEECSSCCHHHHHH
T ss_pred CcEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEECChhhhhHHHHH
Confidence 3566665 444444555 46677999999999988763 345667777776543 345 4567799999999999
Q ss_pred HHHc
Q 003866 355 GLLS 358 (790)
Q Consensus 355 GL~~ 358 (790)
++..
T Consensus 81 ~~t~ 84 (169)
T 3trh_A 81 AHTL 84 (169)
T ss_dssp HTCS
T ss_pred hcCC
Confidence 9853
No 58
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=43.21 E-value=1.1e+02 Score=29.33 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=41.6
Q ss_pred cccCCCCCeEEEEEcCC-------------C-CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--C
Q 003866 272 IFRCKSPPKMLVILNPR-------------S-GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--S 335 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~-------------S-GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~--~ 335 (790)
|.....++.+.+|||-. . ....+...=.+.++.+|+..|++++++.=-...+..+.++++... .
T Consensus 16 Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~ 95 (164)
T 1qtn_A 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 95 (164)
T ss_dssp CCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhcc
Confidence 33334567788888742 0 112222222257889999999999887766666666666665432 2
Q ss_pred CCCceE
Q 003866 336 CPDGII 341 (790)
Q Consensus 336 ~~D~IV 341 (790)
.+|.+|
T Consensus 96 ~~dc~v 101 (164)
T 1qtn_A 96 NMDCFI 101 (164)
T ss_dssp TCSCEE
T ss_pred CCCEEE
Confidence 245444
No 59
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=42.83 E-value=1.3e+02 Score=29.68 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=49.6
Q ss_pred CCCeEEEEEcC--CCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHH
Q 003866 277 SPPKMLVILNP--RSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (790)
Q Consensus 277 rpkrllVIINP--~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVl 353 (790)
+..++.||+.- .+. .-...++ ..++..+++.|+++.+..+... ....++.+.+.. ..+|+||+.+.+.+ .+.+
T Consensus 18 ~~~~Ig~i~~~~~~~~-~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 18 STQTLGLVVTNTLYHG-IYFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp -CCEEEEEECGGGCC---CHHHHH-HHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH-TTCSEEEEECSSSC-HHHH
T ss_pred CCceEEEEeCCcccCC-chHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCC-hHHH
Confidence 45677777743 222 1222333 4677788888988776654332 223445555543 35899999988754 2555
Q ss_pred HHHHc-CCCCCCCCCccEEEee
Q 003866 354 NGLLS-RGNQKEGISIPIGIIP 374 (790)
Q Consensus 354 NGL~~-r~d~~~~~~iPLGIIP 374 (790)
..+.. . .+|+-++-
T Consensus 94 ~~l~~~~-------~iPvV~~~ 108 (296)
T 3brq_A 94 DDIIDAH-------SQPIMVLN 108 (296)
T ss_dssp HHHHHTC-------SSCEEEES
T ss_pred HHHHhcC-------CCCEEEEc
Confidence 55554 3 47776653
No 60
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=42.67 E-value=1.1e+02 Score=31.21 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCceEEEeCchHHH---------HHHHHHHcCCCCCCCCCccEEEeecCCc
Q 003866 336 CPDGIICVGGDGIIN---------EVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 336 ~~D~IVvvGGDGTln---------EVlNGL~~r~d~~~~~~iPLGIIPaGTG 378 (790)
.||+||+.||-|+.. +++...... ..+|+-|=.|..
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~-------gk~iaaIC~Gp~ 149 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKR-------GGVIGAVCHGPA 149 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-------TCEEEEETTGGG
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHHH
Confidence 489999999999842 233333333 467888877774
No 61
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=42.55 E-value=53 Score=32.84 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=50.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHH---HHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKN---LASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~e---la~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
+.+.+.||+ |.....-...++ .-++..+++.|+.+.+..+... ....+ +.+.+.. ..+|+||+++.+.+ .+.
T Consensus 7 ~~~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFV-PTFFGSYYGTIL-KQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG-RDCDGVVVISHDLH-DED 82 (290)
T ss_dssp -CCEEEEEC-SCSCSHHHHHHH-HHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH-TTCSEEEECCSSSC-HHH
T ss_pred CCCeEEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh-cCccEEEEecCCCC-HHH
Confidence 445666666 433221122333 4567778888988776655432 23334 5555543 35899999998766 456
Q ss_pred HHHHHcCCCCCCCCCccEEEee
Q 003866 353 LNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIP 374 (790)
+..|... .+|+-++-
T Consensus 83 ~~~l~~~-------~iPvV~~~ 97 (290)
T 2rgy_A 83 LDELHRM-------HPKMVFLN 97 (290)
T ss_dssp HHHHHHH-------CSSEEEES
T ss_pred HHHHhhc-------CCCEEEEc
Confidence 6666443 47776663
No 62
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.16 E-value=1.7e+02 Score=29.88 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=52.3
Q ss_pred CCCCeEEEEEcC--CCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 276 KSPPKMLVILNP--RSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 276 ~rpkrllVIINP--~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
++.+.+.||+.- .... -...++ .-++..+++.|+.+.+..+..... ..++.+.+.. ..+|+||+++.+..-.++
T Consensus 59 ~~~~~Igvi~~~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~ 135 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGI-YFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLSVDEI 135 (338)
T ss_dssp -CCSEEEEEECTTTTSTT-HHHHHH-HHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHH-TTCSEEEECCSSSCHHHH
T ss_pred CCCCEEEEEecCCcccCh-hHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCChHHH
Confidence 355677777754 2221 112333 467778889999887776654332 2335555533 358999999987765445
Q ss_pred HHHHHcCCCCCCCCCccEEEee
Q 003866 353 LNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIP 374 (790)
..-+... .+|+-++-
T Consensus 136 ~~~~~~~-------~iPvV~~~ 150 (338)
T 3dbi_A 136 DDIIDAH-------SQPIMVLN 150 (338)
T ss_dssp HHHHHHC-------SSCEEEES
T ss_pred HHHHHcC-------CCCEEEEc
Confidence 5444333 46766653
No 63
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=42.07 E-value=82 Score=30.96 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHH-
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN- 354 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN- 354 (790)
+.+.+.||+.-.+ ..-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+ .+.+.
T Consensus 7 ~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 7 KSKLIGLLLPDMS-NPFFTLIA-RGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVS-HNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp ---CEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECGGG---HHHHHH
T ss_pred CCCEEEEEECCCC-CHHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCC---hHHHHH
Confidence 4566777774322 21122333 46777888899998887765532 23345555533 458999999854 45566
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.|... .+|+-++-.
T Consensus 81 ~l~~~-------~iPvV~~~~ 94 (277)
T 3e61_A 81 TLTDH-------HIPFVFIDR 94 (277)
T ss_dssp HHHHC--------CCEEEGGG
T ss_pred HHHcC-------CCCEEEEec
Confidence 66554 477766543
No 64
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=41.95 E-value=52 Score=30.81 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=46.4
Q ss_pred eeeeeecceeeeccc--------ccCCcceEEEEecCC----cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCH
Q 003866 160 VNAKLTSKALVWGSH--------VLPLDDIVSVSYNNG----LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (790)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~l~l~dv~~~~~~~~----~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~ 227 (790)
.===||..-|.|.+. .|+|+.+.--....| -..|.||. |-.+.- -| -.++|++.+.+.
T Consensus 33 rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~-~d~r~v------~~---~h~~y~LsA~t~ 102 (125)
T 1dyn_A 33 YWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFN-TEQRNV------YK---DYRQLELACETQ 102 (125)
T ss_dssp EEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEE-TTSSCS------ST---TCSSEEEEESSH
T ss_pred eEEEEeccceeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEEC-CCCccc------cc---cceEEEEeCCCH
Confidence 334589999999965 688988754333332 33477764 321211 01 247899999999
Q ss_pred HHHHHHHhhhh
Q 003866 228 EEAIQWVGGFA 238 (790)
Q Consensus 228 ~~a~~W~~~~~ 238 (790)
++.+.|..+|.
T Consensus 103 ee~~~Wi~s~~ 113 (125)
T 1dyn_A 103 EEVDSWKASFL 113 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999983
No 65
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=41.81 E-value=34 Score=34.57 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=35.2
Q ss_pred CCCeEEEEE-cCCCC---CCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEE
Q 003866 277 SPPKMLVIL-NPRSG---RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICV 343 (790)
Q Consensus 277 rpkrllVII-NP~SG---kG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvv 343 (790)
.+++++||. .|.-+ ......+. +.+...+++.|.+++++......+..+..+++. +.|.||++
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~-~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~---~aD~iv~~ 90 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLT-NVAADFLRESGHQVKITTVDQGYDIESEIENYL---WADTIIYQ 90 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHH-HHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH---HCSEEEEE
T ss_pred cCcceEEEEeCCCcccCCChHHHHHH-HHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH---hCCEEEEE
Confidence 456777776 66532 12223334 566778888899988877654334444444432 13555543
No 66
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.76 E-value=98 Score=32.07 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+.+.||+.- ....-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+ .+.+..
T Consensus 65 ~s~~Igvi~~~-~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 65 RSNTIGVIVPS-LINHYFAAMV-TEIQSTASKAGLATIITNSNEDATTMSGSLEFLTS-HGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp ---CEEEEESC-SSSHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHH-TTCSCEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeCC-CCCcHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCC-hHHHHH
Confidence 44567777742 2211112333 4567778889998877766543 223345555543 35899999998766 466666
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|... .+|+-++
T Consensus 141 l~~~-------~iPvV~i 151 (348)
T 3bil_A 141 LQKQ-------GMPVVLV 151 (348)
T ss_dssp HHHC--------CCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 6543 4676665
No 67
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=41.33 E-value=1.1e+02 Score=30.03 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=38.5
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhh
Q 003866 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~S-------GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~ 332 (790)
|....+++.+.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++.
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~ 104 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 104 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 333446677777776532 1122222223578899999999998887666666666666654
No 68
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=41.26 E-value=82 Score=30.85 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
.+.+.||+.-.. .--...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.. .+++..|
T Consensus 3 s~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~~~~~~l 78 (275)
T 3d8u_A 3 AYSIALIIPSLF-EKACAHFL-PSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLE-SRPAGVVLFGSEHS-QRTHQLL 78 (275)
T ss_dssp -CEEEEEESCSS-CHHHHHHH-HHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHT-SCCCCEEEESSCCC-HHHHHHH
T ss_pred ceEEEEEeCCCc-cccHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHHHH
Confidence 456777774322 11112333 4567788888988777665432 233445555543 45899999987754 3556655
Q ss_pred HcCCCCCCCCCccEEEe
Q 003866 357 LSRGNQKEGISIPIGII 373 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGII 373 (790)
... .+|+-++
T Consensus 79 ~~~-------~iPvV~~ 88 (275)
T 3d8u_A 79 EAS-------NTPVLEI 88 (275)
T ss_dssp HHH-------TCCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 443 4676665
No 69
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.64 E-value=69 Score=31.95 Aligned_cols=89 Identities=9% Similarity=0.078 Sum_probs=50.6
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+.- ....-...++ +-++..+++.|+++.+..+... ....++.+.+.. ..+|+||+++.+.+-.+++.
T Consensus 18 ~~~~~Ig~i~~~-~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~~~~~ 94 (293)
T 2iks_A 18 GRTRSIGLVIPD-LENTSYTRIA-NYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ-RQVDAIIVSTSLPPEHPFYQ 94 (293)
T ss_dssp CCCCEEEEEESC-SCSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSCTTCHHHH
T ss_pred CCCcEEEEEeCC-CcCcHHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCcHHHHH
Confidence 355677777742 2211112333 4567778888988877665432 223345555543 35899999988764333444
Q ss_pred HHHcCCCCCCCCCccEEEee
Q 003866 355 GLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIP 374 (790)
.+... .+|+-++-
T Consensus 95 ~~~~~-------~iPvV~~~ 107 (293)
T 2iks_A 95 RWAND-------PFPIVALD 107 (293)
T ss_dssp TTTTS-------SSCEEEEE
T ss_pred HHHhC-------CCCEEEEC
Confidence 44322 47776663
No 70
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=40.59 E-value=73 Score=33.10 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=38.7
Q ss_pred cccCCCCCeEEEEEcCCCC------CCC-chhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh
Q 003866 272 IFRCKSPPKMLVILNPRSG------RGR-SSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI 333 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~SG------kG~-a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~ 333 (790)
|.....++++.+|||-..= ... +..-. +.++..|+..|++++++.=-...+..+.++++..
T Consensus 25 Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da-~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 25 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDS-DNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp CCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHH-HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCEEEEEechhcCCCCcccCCCCHHHH-HHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 4444566778888874311 111 12223 5788899999999988876666666776766643
No 71
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=40.54 E-value=60 Score=29.44 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=19.6
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+.+.+|++.|+++|+
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~ 114 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLK 114 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHH
Confidence 489999999999999999995
No 72
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=40.47 E-value=83 Score=33.48 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--CCCCce-E
Q 003866 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDGI-I 341 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~S-------GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~--~~~D~I-V 341 (790)
|.....++++.+|||-.. -...+..-. +.++.+|+..|++++++.=-...+..+.++++... ..+|.+ |
T Consensus 53 Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da-~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv 131 (310)
T 2nn3_C 53 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDS-DNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLV 131 (310)
T ss_dssp CCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHH-HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEE
T ss_pred ccCCCCCcCEEEEEechhcCCCCcccCCCCHHHH-HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEE
Confidence 333445677777777431 111122223 57888999999999888766666666666666432 124543 3
Q ss_pred EE---e-------CchH--HHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 342 CV---G-------GDGI--INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 342 vv---G-------GDGT--lnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
++ | =||. |.++++-+-...-..-..++-|-||-+=-||.+.+
T Consensus 132 ~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~ 185 (310)
T 2nn3_C 132 AVLTAGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDG 185 (310)
T ss_dssp EEEEEEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCCCC
T ss_pred EEeCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecccCCcccc
Confidence 33 2 2332 33333333211100112245677777766666643
No 73
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=40.03 E-value=57 Score=31.88 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~ 357 (790)
+.+.||+.-.+. .-...++ +.++..+++.|+++.+..+... ....++.+.+.. ..+|+||+.+.+..-.+.+..+.
T Consensus 3 ~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLEN-PSYARIA-KQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA-RRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTC-HHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcC-hhHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCccccHHHHHHHH
Confidence 456677654332 1122333 4677788889999888776542 223445555533 45899999998844456667666
Q ss_pred cCCCCCCCCCccEEEee
Q 003866 358 SRGNQKEGISIPIGIIP 374 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIP 374 (790)
.. .+|+-++-
T Consensus 80 ~~-------~iPvV~~~ 89 (272)
T 3o74_A 80 DK-------GLPVIAID 89 (272)
T ss_dssp HT-------TCCEEEES
T ss_pred Hc-------CCCEEEEc
Confidence 54 46766653
No 74
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=39.90 E-value=75 Score=29.84 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEE----eCchHHH--H
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICV----GGDGIIN--E 351 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvv----GGDGTln--E 351 (790)
.++++||+--. .|...++. +.|...|...|++++++......+..++..++. .+|.||+. +|+ +. .
T Consensus 4 ~~kv~IvY~S~--~GnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---~~d~ii~Gspty~g~--~p~~~ 75 (159)
T 3fni_A 4 ETSIGVFYVSE--YGYSDRLA-QAIINGITKTGVGVDVVDLGAAVDLQELRELVG---RCTGLVIGMSPAASA--ASIQG 75 (159)
T ss_dssp CCEEEEEECTT--STTHHHHH-HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH---TEEEEEEECCBTTSH--HHHHH
T ss_pred CCEEEEEEECC--ChHHHHHH-HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH---hCCEEEEEcCcCCCC--ccHHH
Confidence 46788888544 45666666 467778888999888776554424566666654 25777665 344 44 5
Q ss_pred HHHHHHcCCCCCCCCCccEEEeec
Q 003866 352 VLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 352 VlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
++..|.... ....+++++-.
T Consensus 76 ~l~~l~~~~----~~~k~va~fgs 95 (159)
T 3fni_A 76 ALSTILGSV----NEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHC----CTTSEEEEECC
T ss_pred HHHHHHhhc----ccCCEEEEEEc
Confidence 555554321 12467777743
No 75
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=39.90 E-value=1.2e+02 Score=30.73 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVL 353 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~a-gi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVl 353 (790)
+..++.|++.. ...-...++ .-++..+++. |+++.+..+.. .....++++.+.. ..+|+||+++.+.. +.+.+
T Consensus 5 ~~~~Igvi~~~--~~~~~~~~~-~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 5 PHFRIGVAQCS--DDSWRHKMN-DEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMD-EGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp -CCEEEEEESC--CSHHHHHHH-HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSHHHHHHHH
T ss_pred CCeEEEEEecC--CCHHHHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHH
Confidence 55677777643 111111222 3455666677 88877665543 2233345555543 45899999988764 35666
Q ss_pred HHHHcCCCCCCCCCccEEEee
Q 003866 354 NGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 354 NGL~~r~d~~~~~~iPLGIIP 374 (790)
..+... .+|+-++-
T Consensus 81 ~~~~~~-------~iPvV~~~ 94 (325)
T 2x7x_A 81 EEAYQK-------GIPVILVD 94 (325)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHHC-------CCeEEEeC
Confidence 666543 47776663
No 76
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=39.84 E-value=2.1e+02 Score=29.48 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=51.3
Q ss_pred CCeEEEEEc--CCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 278 PPKMLVILN--PRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 278 pkrllVIIN--P~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
..++.||+. +.....--..++ +-++..+++.|+++.+..+....+..+..+.+.. ..+|+||++|..- .+.+..
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~-~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~-~~~dgIi~~~~~~--~~~~~~ 79 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVW-EGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD-ENMGLVVACGSFL--VEAVIE 79 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHH-HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH-TTCSEEEEESTTT--HHHHHH
T ss_pred CcEEEEEEcCCCCCCccHHHHHH-HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH-cCCCEEEECChhH--HHHHHH
Confidence 457888885 433212222334 4567788888998877777655555555666643 3589999987532 222333
Q ss_pred HHcCCCCCCCCCccEEEee
Q 003866 356 LLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIP 374 (790)
+... ..++|+.++-
T Consensus 80 ~a~~-----~p~~p~v~id 93 (318)
T 2fqx_A 80 TSAR-----FPKQKFLVID 93 (318)
T ss_dssp HHHH-----CTTSCEEEES
T ss_pred HHHH-----CCCCEEEEEc
Confidence 3321 1147777774
No 77
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=39.73 E-value=1.1e+02 Score=31.80 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=62.0
Q ss_pred cccCCCCCeEEEEEcCCC--------------CCCCc-hhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--
Q 003866 272 IFRCKSPPKMLVILNPRS--------------GRGRS-SKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS-- 334 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~S--------------GkG~a-~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~-- 334 (790)
|....+++.+.+|||-.. ....+ ..-. +.++.+|+..|++++++.=-...+..+.++++...
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~-~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h 88 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDA-GALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDH 88 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHH-HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHH-HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcC
Confidence 333456777877777521 11111 1223 57889999999999887766666666666665432
Q ss_pred CCCCceEE-----------EeCchH---HHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 335 SCPDGIIC-----------VGGDGI---INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 335 ~~~D~IVv-----------vGGDGT---lnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
..+|.+|| .|=||. |.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 89 ~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~ 151 (271)
T 3h11_B 89 SNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQK 151 (271)
T ss_dssp TTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC-
T ss_pred CCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccC
Confidence 23565432 355653 45555544322111112346678888877777654
No 78
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=39.16 E-value=75 Score=31.75 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch--hHHHHHHHhhhcCCCCceEEEeCchH-HHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG--HAKNLASTVDISSCPDGIICVGGDGI-INEVLN 354 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~--hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlN 354 (790)
.+++.||+... ...-...++ +.++..+++.|+.+.++.....+ ...++.+.+.. ..+|+||+.+.|.. +.+.+.
T Consensus 4 ~~~I~~i~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 4 NETYMMITFQS-GMDYWKRCL-KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA-KNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp -CEEEEEESST-TSTHHHHHH-HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH-HCCSEEEECCSSTTTTHHHHH
T ss_pred CceEEEEEccC-CChHHHHHH-HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH-hCCCEEEEcCCCHHHHHHHHH
Confidence 45666666443 332223444 46778888899888764332222 22344455433 35899999998875 456777
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.+... .+|+-++-.
T Consensus 81 ~~~~~-------~iPvV~~~~ 94 (305)
T 3g1w_A 81 KAVDA-------GIPIVLFDS 94 (305)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHHC-------CCcEEEECC
Confidence 77654 477766644
No 79
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=39.11 E-value=87 Score=30.97 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=51.8
Q ss_pred CCCCeEEEEEcCC----CCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhH-HHHHHHhhhcCCCCceEEEeCchHHH
Q 003866 276 KSPPKMLVILNPR----SGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA-KNLASTVDISSCPDGIICVGGDGIIN 350 (790)
Q Consensus 276 ~rpkrllVIINP~----SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA-~ela~~~~~~~~~D~IVvvGGDGTln 350 (790)
++.+++.||+... ....-...++ +-++..+++.|+.+.+..+...... .++.+.+. ...+|+||+++.+.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVI-RGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQ-GRQIGGIILLYSREN-D 82 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHH-HHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHH-TTCCCEEEESCCBTT-C
T ss_pred CCCCEEEEEecCCccccccCHHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeCCCCC-h
Confidence 3556677766540 2222222333 4677788889988776655443222 33444443 345899999988765 3
Q ss_pred HHHHHHHcCCCCCCCCCccEEEee
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+.+..|... .+|+-++-
T Consensus 83 ~~~~~l~~~-------~iPvV~~~ 99 (292)
T 3k4h_A 83 RIIQYLHEQ-------NFPFVLIG 99 (292)
T ss_dssp HHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHC-------CCCEEEEC
Confidence 666766554 47776653
No 80
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=38.96 E-value=58 Score=28.35 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.++|.|.+++.+++++|+.+|.
T Consensus 95 ~r~~~l~a~s~~e~~~Wi~al~ 116 (127)
T 1fgy_A 95 HVVYRISAPSPEEKEEWMKSIK 116 (127)
T ss_dssp CSEEEEECSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999994
No 81
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=38.90 E-value=96 Score=32.11 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=38.4
Q ss_pred cccCCCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh
Q 003866 272 IFRCKSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI 333 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~SG-------kG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~ 333 (790)
|.....++.+.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+.++++..
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHH
Confidence 3334567888888876521 1112122225788899999999887766666666666666543
No 82
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=38.83 E-value=15 Score=39.90 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--C--chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~--~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+|++||..+.. ...+ +++...|+ .+.++.-- . .....+.++.+.. .+.|.||++|| |++..+.-
T Consensus 38 ~rvliVtd~~~-----~~~~-~~v~~~L~----~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-Gs~iD~aK 105 (364)
T 3iv7_A 38 AKVMVIAGERE-----MSIA-HKVASEIE----VAIWHDEVVMHVPIEVAERARAVATD-NEIDLLVCVGG-GSTIGLAK 105 (364)
T ss_dssp SSEEEECCGGG-----HHHH-HHHTTTSC----CSEEECCCCTTCBHHHHHHHHHHHHH-TTCCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECCCH-----HHHH-HHHHHHcC----CCEEEcceecCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHH
Confidence 67888877641 1233 34544444 22222111 1 2233444444433 35799999999 88888887
Q ss_pred HHHcCCCCCCCCCccEEEeec
Q 003866 355 GLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPa 375 (790)
.+... ..+|+..||.
T Consensus 106 ~iA~~------~~~P~i~IPT 120 (364)
T 3iv7_A 106 AIAMT------TALPIVAIPT 120 (364)
T ss_dssp HHHHH------HCCCEEEEEC
T ss_pred HHHhc------cCCCEEEEcC
Confidence 76543 2589999997
No 83
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=38.62 E-value=99 Score=30.03 Aligned_cols=74 Identities=12% Similarity=0.267 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLNG 355 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlNG 355 (790)
++.||. |......+. +++...|+..|++|++.+.. .++...++++++....++++ |+++|+.+-|--|+-+
T Consensus 4 ~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~ 78 (159)
T 3rg8_A 4 LVIILM----GSSSDMGHA-EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDG 78 (159)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHH
T ss_pred eEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHh
Confidence 455554 444444555 46677999999999988763 34556777777653223554 5667999999999999
Q ss_pred HHc
Q 003866 356 LLS 358 (790)
Q Consensus 356 L~~ 358 (790)
+..
T Consensus 79 ~t~ 81 (159)
T 3rg8_A 79 FVK 81 (159)
T ss_dssp HSS
T ss_pred ccC
Confidence 853
No 84
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=38.59 E-value=40 Score=33.83 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI 348 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGT 348 (790)
+|++||.++..-. - ..+.+.|++.|++++++.....+. +-.++ ..+|+||+.||-++
T Consensus 1 m~i~vi~h~~~e~-~------g~~~~~l~~~g~~~~~~~~~~~~~---~p~~~---~~~d~lii~GGp~~ 57 (236)
T 3l7n_A 1 MRIHFILHETFEA-P------GAYLAWAALRGHDVSMTKVYRYEK---LPKDI---DDFDMLILMGGPQS 57 (236)
T ss_dssp CEEEEEECCTTSC-C------HHHHHHHHHTTCEEEEEEGGGTCC---CCSCG---GGCSEEEECCCSSC
T ss_pred CeEEEEeCCCCCC-c------hHHHHHHHHCCCeEEEEeeeCCCC---CCCCc---cccCEEEECCCCCC
Confidence 4788888765532 1 134567888999988776532211 11112 13799999999887
No 85
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=38.46 E-value=1.2e+02 Score=30.13 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLNG 355 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlNG 355 (790)
.+.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.++ |+++||.+-|--|+-+
T Consensus 15 ~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA~ 88 (183)
T 1o4v_A 15 RVGIIM----GSDSDLPVM-KQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEER-GIEVIIAGAGGAAHLPGMVAS 88 (183)
T ss_dssp EEEEEE----SCGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHHH
T ss_pred eEEEEe----ccHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEecCcccccHHHHHh
Confidence 455554 444445556 46677999999999988763 345667777776533 3454 5677999999999999
Q ss_pred HHcCCCCCCCCCccEEEeecCCc
Q 003866 356 LLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIPaGTG 378 (790)
+.. .|+--+|.-++
T Consensus 89 ~t~---------~PVIgVP~~~~ 102 (183)
T 1o4v_A 89 ITH---------LPVIGVPVKTS 102 (183)
T ss_dssp HCS---------SCEEEEEECCT
T ss_pred ccC---------CCEEEeeCCCC
Confidence 943 45555565443
No 86
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=38.22 E-value=1e+02 Score=30.71 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=53.8
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
++.+.+.||+ ..... -...++ +-++..+++.|+.+.+..+.......++.+.+. ...+|+||+++.+..- +.+..
T Consensus 10 ~~~~~Igvi~-~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-~~~~~ 84 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQP-FHGDLV-EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALM-RERCEAAILLGTRFDT-DELGA 84 (289)
T ss_dssp ---CEEEEEE-ETTCH-HHHHHH-HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHT-TTTEEEEEEETCCCCH-HHHHH
T ss_pred CCCCEEEEEE-ecCCc-hHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-hCCCCEEEEECCCCCH-HHHHH
Confidence 3567788888 33221 122333 467778889999988888776544555666653 3458999999987664 56665
Q ss_pred HHcCCCCCCCCCccEEEee
Q 003866 356 LLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIP 374 (790)
+.. .+|+-++-
T Consensus 85 ~~~--------~iPvV~i~ 95 (289)
T 3k9c_A 85 LAD--------RVPALVVA 95 (289)
T ss_dssp HHT--------TSCEEEES
T ss_pred HHc--------CCCEEEEc
Confidence 532 36766653
No 87
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=38.15 E-value=70 Score=32.08 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCCCeEEEEEcCCC---CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 276 KSPPKMLVILNPRS---GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 276 ~rpkrllVIINP~S---GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
++.+.+.||+.... ...-...++ ..++..+++.|+.+.+..+.......++.+.+.. ..+|+||+++.+.+- +.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMI-SWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-RRVDALIVAHTQPED-FR 80 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-TCCSEEEECSCCSSC-HH
T ss_pred CccceEEEEecCCCccccChhHHHHH-HHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-CCCCEEEEeCCCCCh-HH
Confidence 35567777774211 111112333 4567788889999988888754444555555543 358999999887543 66
Q ss_pred HHHHHcCCCCCCCCCccEEEee
Q 003866 353 LNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIP 374 (790)
+..|... .+|+-++-
T Consensus 81 ~~~l~~~-------~iPvV~~~ 95 (294)
T 3qk7_A 81 LQYLQKQ-------NFPFLALG 95 (294)
T ss_dssp HHHHHHT-------TCCEEEES
T ss_pred HHHHHhC-------CCCEEEEC
Confidence 6666554 46766653
No 88
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.98 E-value=1.5e+02 Score=30.16 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=50.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++...+.||+.-.. ..-...++ .-++..+++.|+.+.+..+.... ...++.+.+. ...+|+||+++.+.+- +.+.
T Consensus 58 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 58 KKTTTVGVIIPDIS-NIFYAELA-RGIEDIATMYKYNIILSNSDQNQDKELHLLNNML-GKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp C-CCEEEEEEC--C-CSHHHHHH-HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTS-CCSSCCEEECCSSCCH-HHHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHHH-HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCH-HHHH
Confidence 35567777774322 22222333 46777888899888776554322 2234555554 3458999999877652 5566
Q ss_pred HHHcCCCCCCCCCccEEEee
Q 003866 355 GLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIP 374 (790)
.|... .+|+-++-
T Consensus 134 ~l~~~-------~iPvV~~~ 146 (332)
T 2hsg_A 134 ELKKS-------PVPVVLAA 146 (332)
T ss_dssp HHTTS-------SSCEEEES
T ss_pred HHHhC-------CCCEEEEc
Confidence 55432 47776663
No 89
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=36.84 E-value=1.2e+02 Score=31.59 Aligned_cols=113 Identities=15% Similarity=0.023 Sum_probs=60.6
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--CCCCceE-
Q 003866 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDGII- 341 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~S-------GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~--~~~D~IV- 341 (790)
|.....++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++... ..+|.+|
T Consensus 14 Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv 93 (278)
T 3od5_A 14 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVC 93 (278)
T ss_dssp CCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEE
T ss_pred cCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEE
Confidence 334456777777776542 111122121257889999999999887766666666666665432 2345433
Q ss_pred EE----------eCchH--HHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 342 CV----------GGDGI--INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 342 vv----------GGDGT--lnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
++ |=||. |.++++-+-...-..-..++-|-||-+=-||.+...
T Consensus 94 ~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g 148 (278)
T 3od5_A 94 VFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVP 148 (278)
T ss_dssp EEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCE
T ss_pred EEECCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCC
Confidence 22 33443 333333332211011122466778877777776643
No 90
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=36.37 E-value=57 Score=35.51 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--Cc--hhHHHHHHHhhhcC--CCCceEEEeCchHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SA--GHAKNLASTVDISS--CPDGIICVGGDGIINEV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te--~~--~hA~ela~~~~~~~--~~D~IVvvGGDGTlnEV 352 (790)
++++||..+.-- ... +...|+.+++++.++.-- .+ ....++++.+...+ ..|.||++|| |.+-.+
T Consensus 54 ~~~liVtd~~~~---~~~-----l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD~ 124 (375)
T 3rf7_A 54 DFVVFLVDDVHQ---HKP-----LAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTMDL 124 (375)
T ss_dssp CCEEEEEEGGGT---TSH-----HHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHHHH
T ss_pred CeEEEEECchhh---hhH-----HHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHHHH
Confidence 678888876421 111 334566678887654321 11 22333333332211 2699999999 777777
Q ss_pred HHHHHcCC---C-------C--CCCCCccEEEeec
Q 003866 353 LNGLLSRG---N-------Q--KEGISIPIGIIPA 375 (790)
Q Consensus 353 lNGL~~r~---d-------~--~~~~~iPLGIIPa 375 (790)
.-.+...- . | .....+|+..||.
T Consensus 125 AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 125 AKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 66654321 0 0 0112589999996
No 91
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=35.62 E-value=1.6e+02 Score=28.94 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+++.||+. .....-...++ ..++..+++.|+++.+..+... ....++.+.+.. ..+|+||+.+.+.+ .+++..
T Consensus 6 ~~~~Ig~i~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~~~~~~ 81 (289)
T 1dbq_A 6 HTKSIGLLAT-SSEAAYFAEII-EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYP-EPLLAM 81 (289)
T ss_dssp --CEEEEEES-CTTSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEECSCCC-HHHHHH
T ss_pred CCCEEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHh-CCCCEEEEEeccCC-HHHHHH
Confidence 4566777763 32211112233 4566778888988877655432 223345555543 45899999988764 234444
Q ss_pred HHcCCCCCCCCCccEEEee
Q 003866 356 LLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGIIP 374 (790)
|... .++|+-.+-
T Consensus 82 l~~~------~~iPvV~~~ 94 (289)
T 1dbq_A 82 LEEY------RHIPMVVMD 94 (289)
T ss_dssp HHHT------TTSCEEEEE
T ss_pred HHhc------cCCCEEEEc
Confidence 4321 146766653
No 92
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=35.47 E-value=98 Score=31.05 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=26.2
Q ss_pred CCCceEEEeCchHHH-----HHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 336 CPDGIICVGGDGIIN-----EVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 336 ~~D~IVvvGGDGTln-----EVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
.||+||+.||-|... +-+..++.+- .....+++-|=.|.. .||.
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~---~~~gk~vaaIC~G~~-~La~ 146 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEI---YANGGVVAAVCHGPA-IFDG 146 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHH---HHTTCEEEEETTGGG-GGTT
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHH---HHcCCEEEEECCCHH-HHHh
Confidence 479999999988632 2222222210 011468888888876 6665
No 93
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=35.30 E-value=1.3e+02 Score=29.71 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=49.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL 356 (790)
+++.||+. .....-...++ +-++..+++.|+++.+..+.. .....++.+.+.. ..+|+||+++.+.. +.+.+..+
T Consensus 3 ~~Ig~i~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVIS-TLNNPWFVVLA-ETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA-AGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEES-CSSSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHHHHHHH
Confidence 45666663 32221122333 456778888898887766543 2223345555543 35899999987754 34566666
Q ss_pred HcCCCCCCCCCccEEEee
Q 003866 357 LSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIP 374 (790)
... .+|+-++-
T Consensus 80 ~~~-------~iPvV~~~ 90 (290)
T 2fn9_A 80 KEA-------GIPVFCVD 90 (290)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCeEEEEe
Confidence 543 46776653
No 94
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=34.96 E-value=1.1e+02 Score=28.83 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=38.3
Q ss_pred cCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh
Q 003866 274 RCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI 333 (790)
Q Consensus 274 ~~~rpkrllVIINP~S-------GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~ 333 (790)
....++.+.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++..
T Consensus 11 m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 11 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHH
Confidence 3345677888887631 11122222225788999999999988876666666666666643
No 95
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=34.89 E-value=1.1e+02 Score=30.12 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlN 354 (790)
+++.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.++ |+++||.+-|--|+-
T Consensus 12 ~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 85 (170)
T 1xmp_A 12 SLVGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARER-GLKVIIAGAGGAAHLPGMVA 85 (170)
T ss_dssp CSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHH
T ss_pred CcEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhC-CCcEEEEECCchhhhHHHHH
Confidence 4466665 444444555 46677899999999988763 345667777776533 3454 567799999999999
Q ss_pred HHHcCCCCCCCCCccEEEeecCCc
Q 003866 355 GLLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIPaGTG 378 (790)
++.. .|+--+|.-++
T Consensus 86 ~~t~---------~PVIgVP~~~~ 100 (170)
T 1xmp_A 86 AKTN---------LPVIGVPVQSK 100 (170)
T ss_dssp TTCC---------SCEEEEEECCT
T ss_pred hccC---------CCEEEeeCCCC
Confidence 8843 45555555443
No 96
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=34.89 E-value=1.4e+02 Score=29.60 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLN 354 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlN 354 (790)
.++.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.++ |+++||.+-|--|+-
T Consensus 22 ~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 95 (182)
T 1u11_A 22 PVVGIIM----GSQSDWETM-RHADALLTELEIPHETLIVSAHRTPDRLADYARTAAER-GLNVIIAGAGGAAHLPGMCA 95 (182)
T ss_dssp CSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHH
T ss_pred CEEEEEE----CcHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEecCchhhhHHHHH
Confidence 4677776 444444555 46677999999999988763 345666777776533 3454 567799999999999
Q ss_pred HHHc
Q 003866 355 GLLS 358 (790)
Q Consensus 355 GL~~ 358 (790)
++..
T Consensus 96 ~~t~ 99 (182)
T 1u11_A 96 AWTR 99 (182)
T ss_dssp HHCS
T ss_pred hccC
Confidence 9853
No 97
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=34.78 E-value=1.5e+02 Score=28.34 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCCeEEEEE--cCCCCCCCchhhHHHhHHHHHHHcCCeEEE--EEeCCchhHHHHHHHhhhcCCCCceEEEeCch
Q 003866 277 SPPKMLVIL--NPRSGRGRSSKVFHDIVEPIFKLAGFKLEV--VKTTSAGHAKNLASTVDISSCPDGIICVGGDG 347 (790)
Q Consensus 277 rpkrllVII--NP~SGkG~a~kv~~~~I~plL~~agi~~~v--~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDG 347 (790)
+..++.||. |. .|. -...--..+..+|++.|+++.. +..+..+...+..+++.....+|.||+.||=|
T Consensus 9 ~~~~v~Ii~tGdE-~g~--i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 9 IPTRIAILTVSNR-RGE--EDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCEEEEEEECSS-CCG--GGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCEEEEEEEeCC-CCc--ccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 345666665 33 332 2222223577889999987643 33344444444444443221379999999965
No 98
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.75 E-value=41 Score=31.60 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=32.2
Q ss_pred ccccCCcceEEEEecCCc----c---eEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHHHhhh
Q 003866 173 SHVLPLDDIVSVSYNNGL----R---HFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGF 237 (790)
Q Consensus 173 ~~~l~l~dv~~~~~~~~~----~---~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W~~~~ 237 (790)
.++|.|+|||.|.--.+. . -|.|+ . ..++|.|.+++ +|...|+.+|
T Consensus 64 rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~--T----------------~er~~~laAe~-~E~~~Wi~~i 116 (127)
T 2d9w_A 64 RKVIRLSDCLRVAEAGGEASSPRDTSAFFLE--T----------------KERLYLLAAPA-AERGDWVQAI 116 (127)
T ss_dssp EEEECGGGEEEEEECCSCSSSCSSCEEEEEE--E----------------SSCEEEEEECH-HHHHHHHHHH
T ss_pred ceEEEhhhCCeEecccCccCCCCcceEEEEE--e----------------CCcEEEEEeCc-HHHHHHHHHH
Confidence 469999999998844332 2 23333 1 12578899885 5899999998
No 99
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.61 E-value=41 Score=30.84 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.2
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.+.|.|.++|.++++.|+.+|.
T Consensus 99 ~~~~~f~A~s~~e~~~Wi~ai~ 120 (130)
T 1v88_A 99 SSYLIIRATSESDGRCWMDALE 120 (130)
T ss_dssp SSCCEEECSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHH
Confidence 3458899999999999999994
No 100
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=34.56 E-value=47 Score=30.47 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=35.3
Q ss_pred cccCCcceEEEEecCC-------------cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHHHhhh
Q 003866 174 HVLPLDDIVSVSYNNG-------------LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGF 237 (790)
Q Consensus 174 ~~l~l~dv~~~~~~~~-------------~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W~~~~ 237 (790)
..|.|+||-.|..-.. ...|+|.+-- ..+++.|.|++.++|+.|++.|
T Consensus 56 ~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~----------------~~k~LdlvA~s~~e~~~Wv~gL 116 (131)
T 1mai_A 56 QLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKD----------------QRNTLDLIAPSPADAQHWVQGL 116 (131)
T ss_dssp TEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESS----------------SCCCEEEECSSHHHHHHHHHHH
T ss_pred cEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECC----------------CCceEEEEeCCHHHHHHHHHHH
Confidence 4689999988775542 2346665321 1478999999999999999998
No 101
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=34.38 E-value=1.6e+02 Score=32.90 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCC--ceEEEeCchHHHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD--GIICVGGDGIINEV 352 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D--~IVvvGGDGTlnEV 352 (790)
..++.||. |......+. +.+...|+..|+.|++.+.. .++...++++++... +.. .|+++||.|.|--|
T Consensus 265 ~~~V~Ii~----gs~SD~~~~-~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~-g~~~viIa~AG~~a~Lpgv 338 (425)
T 2h31_A 265 QCRVVVLM----GSTSDLGHC-EKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGD-GIPTVFVAVAGRSNGLGPV 338 (425)
T ss_dssp CCEEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTT-CCCEEEEEECCSSCCHHHH
T ss_pred CCeEEEEe----cCcccHHHH-HHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHC-CCCeEEEEEcCcccchHhH
Confidence 35677776 444444555 45677999999999988763 345667788777543 343 56777999999999
Q ss_pred HHHHHc
Q 003866 353 LNGLLS 358 (790)
Q Consensus 353 lNGL~~ 358 (790)
+.++..
T Consensus 339 va~~t~ 344 (425)
T 2h31_A 339 MSGNTA 344 (425)
T ss_dssp HHHHCS
T ss_pred HhccCC
Confidence 999953
No 102
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=34.25 E-value=80 Score=32.97 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=61.3
Q ss_pred cccCCCCCeEEEEEcCCCC-------CCCch-hhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--CCCCceE
Q 003866 272 IFRCKSPPKMLVILNPRSG-------RGRSS-KVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDGII 341 (790)
Q Consensus 272 ~~~~~rpkrllVIINP~SG-------kG~a~-kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~--~~~D~IV 341 (790)
|.....++++.+|||-..= ...+. .-. +.++.+|+..|++++++.=-...+..+.++++... ..+|.+|
T Consensus 37 Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~-~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~v 115 (277)
T 4ehd_A 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDA-ANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFV 115 (277)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHH-HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred ccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHH-HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEE
Confidence 4444567888888863221 11111 122 57888999999999887766666666666666532 1234332
Q ss_pred -E----------EeCchH--HHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 342 -C----------VGGDGI--INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 342 -v----------vGGDGT--lnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
+ .|=||. |.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 116 v~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~ 170 (277)
T 4ehd_A 116 CVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDC 170 (277)
T ss_dssp EEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBC
T ss_pred EEEEcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccC
Confidence 2 233443 33444333221101112346688888877777654
No 103
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=34.17 E-value=2e+02 Score=29.40 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=52.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+.+.||+....... ...++ .-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++-+.+- +.+..
T Consensus 61 ~~~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTV-FLETL-TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQ-HRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp --CEEEEEESCSTTCT-THHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCT-THHHH
T ss_pred CCCEEEEEeCCCCCHH-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHc-CCCCEEEEeCCCCCH-HHHHH
Confidence 4566777775443322 23444 5678889999998877766543 233445555533 458999999876543 45555
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|... .+|+-++
T Consensus 137 l~~~-------~iPvV~~ 147 (339)
T 3h5o_A 137 LSQH-------ALPVVYM 147 (339)
T ss_dssp HHHT-------TCCEEEE
T ss_pred HhcC-------CCCEEEE
Confidence 5543 4777666
No 104
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=33.63 E-value=1.4e+02 Score=30.51 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=49.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+...+.||+.-. ...-...++ .-++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.+ .+.+..
T Consensus 62 ~~~~Ig~i~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTI-TSTYFAAIT-RGVDDIASMYKYNMILANSDNDVEKEEKVLETFLS-KQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCT-TCHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCC-CCcHHHHHH-HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHh-CCCCEEEEeCCCCC-HHHHHH
Confidence 456777777422 211122333 45677788889888776654432 23345555543 45899999987654 345555
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|... .+|+-++
T Consensus 138 l~~~-------~iPvV~~ 148 (332)
T 2o20_A 138 LKNS-------RTPVVLV 148 (332)
T ss_dssp HHHH-------CCCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 5432 4676665
No 105
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.58 E-value=1.6e+02 Score=29.52 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=52.8
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+.-.+. .-...++ .-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+-.+.+.
T Consensus 13 ~~s~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~ 89 (303)
T 3kke_A 13 SRSGTIGLIVPDVNN-AVFADMF-SGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE-GRVDGVLLQRREDFDDDMLA 89 (303)
T ss_dssp ----CEEEEESCTTS-TTHHHHH-HHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS-CSSSEEEECCCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCcC-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCcHHHHH
Confidence 355667777754332 2223444 4677888999999888776543 333455565543 45899999998876332666
Q ss_pred HHHcCCCCCCCCCccEEEee
Q 003866 355 GLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIP 374 (790)
.|.. .+|+-++-
T Consensus 90 ~l~~--------~iPvV~i~ 101 (303)
T 3kke_A 90 AVLE--------GVPAVTIN 101 (303)
T ss_dssp HHHT--------TSCEEEES
T ss_pred HHhC--------CCCEEEEC
Confidence 6654 26766553
No 106
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=33.54 E-value=1.4e+02 Score=29.89 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
..+|+.+|.+|... .+...+ +..+..++++|+++.........+..+.++++. ..+|+|++ +.|.+.-.++..+
T Consensus 132 g~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~--~~~dai~~-~~D~~a~g~~~~l 205 (295)
T 3lft_A 132 NVKTIGALYSSSED--NSKTQV-EEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT--SKVDAIWV-PIDNTIASGFPTV 205 (295)
T ss_dssp TCCEEEEEEETTCH--HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT--TTCSEEEE-CSCHHHHHTHHHH
T ss_pred CCcEEEEEeCCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH--hcCCEEEE-CCchhHHHHHHHH
Confidence 45899999998542 232333 456678889999877665555666677777764 24676655 6798887777777
Q ss_pred HcC
Q 003866 357 LSR 359 (790)
Q Consensus 357 ~~r 359 (790)
...
T Consensus 206 ~~~ 208 (295)
T 3lft_A 206 VSS 208 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 107
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=33.26 E-value=1.8e+02 Score=28.81 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLL 357 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~ 357 (790)
.++.||+.-. ...-...++ +-++..+++.|+++.+..+.......+..+.+.. ..+|+||+++-|.. ..+++..+.
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 3 LKLGFLVKQP-EEPWFQTEW-KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp EEEEEEESCT-TSHHHHHHH-HHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSCGGGHHHHHHHHH
T ss_pred eEEEEEeCCC-CchHHHHHH-HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCchhhHHHHHHHH
Confidence 3455665422 211112333 4567788888988776665433333445555543 35899999998765 345566666
Q ss_pred cCCCCCCCCCccEEEee
Q 003866 358 SRGNQKEGISIPIGIIP 374 (790)
Q Consensus 358 ~r~d~~~~~~iPLGIIP 374 (790)
.. .+|+-.+-
T Consensus 80 ~~-------~iPvV~~~ 89 (306)
T 8abp_A 80 GY-------DMKVIAVD 89 (306)
T ss_dssp HT-------TCEEEEES
T ss_pred HC-------CCcEEEeC
Confidence 54 47776664
No 108
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=33.14 E-value=1.9e+02 Score=28.62 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=43.2
Q ss_pred HhHHHHHHHcCC-eEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 300 DIVEPIFKLAGF-KLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 300 ~~I~plL~~agi-~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.-++..+++.|+ ++.+..+.. .....++.+.+.. ..+|+||+.+.|.+ ..+++..+... .+|+-++-.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~~~ 92 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAGTVIEKARGQ-------NVPVVFFNK 92 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSGGGHHHHHHHHHTT-------TCCEEEESS
T ss_pred HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCcchhHHHHHHHHHC-------CCcEEEecC
Confidence 456677888897 776665543 2223445555543 45899999998875 45677776543 477766643
No 109
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.04 E-value=2e+02 Score=26.91 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLA 328 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela 328 (790)
++++.|.|+++|-|+..-. ..+...|.+.|.++-++..+..+....+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a--~~la~~la~~g~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAV--INIATALSRSGYNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp CEEEEECCSSTTSSHHHHH--HHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHH--HHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 4788999999999987433 35677888899999888887777665543
No 110
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=32.96 E-value=1.5e+02 Score=29.79 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL 356 (790)
+++.||+.-.+. .-...++ .-++..+++.|+++.+..+..... ..+.++.+.. ..+|+||+++-|.. ..+.+..+
T Consensus 4 ~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSS-ARWIDDG-NNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSS-THHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcc-hHHHHHH-HHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCCchhHHHHHHHH
Confidence 556666654332 2222333 467788889999887776554322 2334444433 34899999998864 46677777
Q ss_pred HcCCCCCCCCCccEEEeec
Q 003866 357 LSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGIIPa 375 (790)
... .+|+-.+-.
T Consensus 81 ~~~-------giPvV~~~~ 92 (330)
T 3uug_A 81 GEQ-------GIKVIAYDR 92 (330)
T ss_dssp HHT-------TCEEEEESS
T ss_pred HHC-------CCCEEEECC
Confidence 655 477766643
No 111
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.92 E-value=54 Score=29.88 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.4
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+.+.+++..|+.+|.
T Consensus 100 r~~~l~A~s~~e~~~Wi~al~ 120 (150)
T 1wg7_A 100 SSYLLAADSEVEMEEWITILN 120 (150)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHH
Confidence 579999999999999999995
No 112
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=31.99 E-value=1e+02 Score=31.15 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=50.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE--EEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV--VKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v--~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
..+|+.+|.. ... .+.... +.++..|+++|+++.. .......+....+.++... .+|+|++++-|.....++.
T Consensus 134 g~~~ia~i~~-~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~-~~dav~~~~~~~~a~~~~~ 208 (362)
T 3snr_A 134 NVKTVGYIGY-SDS--YGDLWF-NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAA-NPDAILVGASGTAAALPQT 208 (362)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHH-CCSEEEEECCHHHHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHHH-HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhc-CCCEEEEecCcchHHHHHH
Confidence 4578888743 221 222333 4567788999987532 2222233334444444332 4789988887888888888
Q ss_pred HHHcCCCCCCCCCccE
Q 003866 355 GLLSRGNQKEGISIPI 370 (790)
Q Consensus 355 GL~~r~d~~~~~~iPL 370 (790)
.+.+.. .++|+
T Consensus 209 ~~~~~g-----~~~p~ 219 (362)
T 3snr_A 209 TLRERG-----YNGLI 219 (362)
T ss_dssp HHHHTT-----CCSEE
T ss_pred HHHHcC-----CCccE
Confidence 887663 34565
No 113
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=31.83 E-value=1.1e+02 Score=32.50 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=56.3
Q ss_pred cccCCC-CCeEEEEEcCCC-----CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcC---CCCceEE
Q 003866 272 IFRCKS-PPKMLVILNPRS-----GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISS---CPDGIIC 342 (790)
Q Consensus 272 ~~~~~r-pkrllVIINP~S-----GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~---~~D~IVv 342 (790)
|....+ ++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++.... .+|.+|+
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 444445 788888887542 1122222222578899999999887765555555555555553211 3454332
Q ss_pred E----eC-----------chH---HHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 343 V----GG-----------DGI---INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 343 v----GG-----------DGT---lnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
+ |. ||. |.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 133 ~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~ 191 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDL 191 (316)
T ss_dssp EEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC-------
T ss_pred EEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccC
Confidence 2 22 453 55555544322111112356688888877777754
No 114
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=31.53 E-value=1.9e+02 Score=28.23 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=25.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhh
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~ 332 (790)
+.++.+|+..|++++++.--...+..+.++++.
T Consensus 68 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~ 100 (178)
T 2h54_A 68 TGMTMLLQNLGYSVDVKKNLTASDMTTELEAFA 100 (178)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 578889999999998876666666666666653
No 115
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.40 E-value=1.3e+02 Score=30.25 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL 356 (790)
.++.|++ |..+..-...++ .-++..+++.|+.+.+..+... ....++++.+.. ..+|+||+++.+.. +.+.+..+
T Consensus 3 ~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQ-VGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVA-QGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEE-CCCCSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEe-CCCCCHHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhHHHHHHHH
Confidence 3455554 443322122233 4567778888988877665432 223345555533 34899999988764 35666666
Q ss_pred HcCCCCCCCCCccEEEe
Q 003866 357 LSRGNQKEGISIPIGII 373 (790)
Q Consensus 357 ~~r~d~~~~~~iPLGII 373 (790)
... .+|+-++
T Consensus 80 ~~~-------~iPvV~~ 89 (306)
T 2vk2_A 80 KDA-------EIPVFLL 89 (306)
T ss_dssp HHT-------TCCEEEE
T ss_pred HHC-------CCCEEEe
Confidence 543 4676665
No 116
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.34 E-value=1.8e+02 Score=27.67 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCCeEEEEE--cCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCch
Q 003866 277 SPPKMLVIL--NPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDG 347 (790)
Q Consensus 277 rpkrllVII--NP~SGkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGDG 347 (790)
++.++.||. |.. |.-.. .--..+..+|++.|+++..+ ..+..+..++..+++.....+|.||+.||=|
T Consensus 12 ~~~rv~Ii~tGdEl-g~i~D--sn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TEETD--KSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCCEEEEEEECSSC-CTTTC--HHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred cCCEEEEEEEcCcc-Ceecc--ChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 455666665 444 33222 12235778899999876432 3334444444444443212479999999965
No 117
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=31.08 E-value=1.3e+02 Score=29.71 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCc-eEEEeCchHHHHHHHH
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDG-IICVGGDGIINEVLNG 355 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~-IVvvGGDGTlnEVlNG 355 (790)
.+.||. |......+. +....+|++.|+.|++.+.. .++...++++++... ++++ |.++||.+-|--++-+
T Consensus 24 ~V~Iim----GS~SD~~v~-~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~-g~~ViIa~AG~aahLpGvvAa 97 (181)
T 4b4k_A 24 LVGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARER-GLKVIIAGAGGAAHLPGMVAA 97 (181)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEEEECSSCCHHHHHHT
T ss_pred cEEEEE----CCHhHHHHH-HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhc-CceEEEEeccccccchhhHHh
Confidence 366666 544455566 46677999999999988763 344566777776543 3554 5677999999999988
Q ss_pred HH
Q 003866 356 LL 357 (790)
Q Consensus 356 L~ 357 (790)
+-
T Consensus 98 ~T 99 (181)
T 4b4k_A 98 KT 99 (181)
T ss_dssp TC
T ss_pred cC
Confidence 63
No 118
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=30.93 E-value=59 Score=34.82 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 325 ~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
.++++.+.. .+.|.+|++|||||+.-+ +.|.+. .+|+--||.==-||+.-+
T Consensus 84 ~~~~~~l~~-~~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~t 134 (320)
T 1pfk_A 84 AVAIENLKK-RGIDALVVIGGDGSYMGA-MRLTEM-------GFPCIGLPGTIDNDIKGT 134 (320)
T ss_dssp HHHHHHHHH-TTCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHH-cCCCEEEEECCCchHHHH-HHHHhh-------CCCEEEEeccccCCCCCC
Confidence 344444433 247999999999998764 556553 588999999889999854
No 119
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=30.46 E-value=1.1e+02 Score=32.72 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-----chhHHHHHHHhhhcC--CCCceEEEeCchHHH
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-----AGHAKNLASTVDISS--CPDGIICVGGDGIIN 350 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-----~~hA~ela~~~~~~~--~~D~IVvvGGDGTln 350 (790)
.+|++||.++... + +.+.+...|+ .++. .+ .... .....++++.+...+ ..|.||++|| |.+.
T Consensus 28 ~~kvliVtd~~v~-----~-~~~~v~~~L~-~~~~-~~-~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~ 97 (348)
T 1ujn_A 28 AGPAALLFDRRVE-----G-FAQEVAKALG-VRHL-LG-LPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLT 97 (348)
T ss_dssp SSCEEEEEEGGGH-----H-HHHHHHHHHT-CCCE-EE-ECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CCEEEEEECCcHH-----H-HHHHHHHHhc-cCeE-EE-ECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHH
Confidence 4789999986432 2 3356777776 5554 22 2221 123344444332211 2489999998 7888
Q ss_pred HHHHHHHcCCCCCCCCCccEEEeec
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.+.-.+...- ...+|+..||.
T Consensus 98 D~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 98 DLGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCCEEEecC
Confidence 8777765321 12589999995
No 120
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=30.26 E-value=67 Score=30.98 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=51.2
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-----hHH-HH-----HHHhhhcCCCCceEEEe
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-----HAK-NL-----ASTVDISSCPDGIICVG 344 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-----hA~-el-----a~~~~~~~~~D~IVvvG 344 (790)
.++++++||+-|..- ...+. .....|+.+|++++++-.+... +.. .+ ..++.. ..+|.||+.|
T Consensus 21 ~~~~kV~ill~~g~~---~~e~~--~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~-~~~D~livpG 94 (193)
T 1oi4_A 21 GLSKKIAVLITDEFE---DSEFT--SPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTP-AEFDALLLPG 94 (193)
T ss_dssp TCCCEEEEECCTTBC---THHHH--HHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCG-GGCSEEEECC
T ss_pred ccCCEEEEEECCCCC---HHHHH--HHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCc-ccCCEEEECC
Confidence 467889999886321 22222 3455788999888776543211 000 00 011111 2379999999
Q ss_pred CchHH--------HHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 345 GDGII--------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 345 GDGTl--------nEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
|-|.- .+.+.....+ ..+++-|=.|.. .||+
T Consensus 95 G~~~~~l~~~~~l~~~l~~~~~~-------gk~i~aIC~G~~-lLa~ 133 (193)
T 1oi4_A 95 GHSPDYLRGDNRFVTFTRDFVNS-------GKPVFAICHGPQ-LLIS 133 (193)
T ss_dssp BTHHHHHTTSHHHHHHHHHHHHT-------TCCEEEETTTHH-HHHH
T ss_pred CcCHHHhhhCHHHHHHHHHHHHc-------CCEEEEECHHHH-HHHH
Confidence 97652 2222222222 467887777764 5554
No 121
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=30.13 E-value=79 Score=29.95 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCCceEEEeCchHHHHHHHHHHcC
Q 003866 336 CPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 336 ~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
.+|.+|++.|||=+-.++..|.++
T Consensus 108 ~~d~~vLvSgD~DF~plv~~lr~~ 131 (165)
T 2qip_A 108 DVDRVILVSGDGDFSLLVERIQQR 131 (165)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHH
T ss_pred cCCEEEEEECChhHHHHHHHHHHH
Confidence 479999999999999999999874
No 122
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.98 E-value=1.8e+02 Score=28.97 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=45.9
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI 348 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGT 348 (790)
++.+.+.||+.-.....-...++ .-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIV-RGIQDWANANGKTILIANTGGSSEREVEIWKMFQS-HRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEecCCcc
Confidence 45677888886554333332445 5788899999998887776543 233445555543 45899999987753
No 123
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=29.62 E-value=60 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=36.7
Q ss_pred HHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 325 ~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
.++++.+.. .+.|.+|++|||||+.-+ +.|.+. .+++--||.==-||+.-+
T Consensus 83 ~~~~~~l~~-~~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~t 133 (319)
T 1zxx_A 83 LAGIEQLKK-HGIDAVVVIGGDGSYHGA-LQLTRH-------GFNSIGLPGTIDNDIPYT 133 (319)
T ss_dssp HHHHHHHHH-TTCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEEETTCCCTTC
T ss_pred HHHHHHHHH-hCCCEEEEECCchHHHHH-HHHHHh-------CCCEEEEeecccCCCCCC
Confidence 344444433 247999999999998654 556543 488999999888999853
No 124
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=29.17 E-value=77 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.4
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.+.|.|.++|.++++.|+++|.
T Consensus 94 ~~~~~~~A~s~ee~~~Wi~ai~ 115 (124)
T 2w2x_D 94 DPPVEFATDKVEELFEWFQSIR 115 (124)
T ss_dssp CCCEEEEECCCHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHH
Confidence 3468999999999999999995
No 125
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=29.12 E-value=51 Score=32.97 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=38.6
Q ss_pred eeecceeeeccc--------ccCCcceEEEEecCC-cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHH
Q 003866 163 KLTSKALVWGSH--------VLPLDDIVSVSYNNG-LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQW 233 (790)
Q Consensus 163 ~~~~~~~~~~~~--------~l~l~dv~~~~~~~~-~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W 233 (790)
.|+...|.|.+. .|.|.++..+....+ ...|.|.. ..++|.|.+++.+++++|
T Consensus 85 vL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~~k~~~F~I~t------------------~~r~~~l~A~s~~e~~~W 146 (228)
T 3tfm_A 85 VLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIM------------------ADRTFHLIAESPEDASQW 146 (228)
T ss_dssp EECSSEEEEESSTTCCSEEEEEEGGGCSEEEEETTTTSEEEEEC------------------SSCEEEEECSSHHHHHHH
T ss_pred EEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCCCCCcEEEEEc------------------CCcEEEEEcCCHHHHHHH
Confidence 355556666543 567777766553332 33466642 125799999999999999
Q ss_pred Hhhhhc
Q 003866 234 VGGFAD 239 (790)
Q Consensus 234 ~~~~~~ 239 (790)
+++|..
T Consensus 147 v~aL~~ 152 (228)
T 3tfm_A 147 FSVLSQ 152 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999953
No 126
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.96 E-value=1.4e+02 Score=30.33 Aligned_cols=88 Identities=6% Similarity=-0.068 Sum_probs=51.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCC--CCceEEEeCchH-HHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSC--PDGIICVGGDGI-INEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~--~D~IVvvGGDGT-lnEV 352 (790)
+..++.||+.-.+ ..-...++ ..++..+++.|+++.+..+... ....++++.+.. .. +|+||+++.+.. +.++
T Consensus 4 ~s~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 4 GQTTLACSFRSLT-NPYYTAFN-KGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CCCEEEEEESCTT-SHHHHHHH-HHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCSSHHHHHHH
T ss_pred CccEEEEEecCCC-cHHHHHHH-HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCCCHHHHHHH
Confidence 4566777774322 11112233 4567778888998877765432 222344555433 35 799999988764 3456
Q ss_pred HHHHHcCCCCCCCCCccEEEee
Q 003866 353 LNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIP 374 (790)
+..+... .+|+-.+-
T Consensus 81 ~~~~~~~-------~iPvV~~~ 95 (332)
T 2rjo_A 81 VEACSKA-------GAYVTTIW 95 (332)
T ss_dssp HHHHHHH-------TCEEEEES
T ss_pred HHHHHHC-------CCeEEEEC
Confidence 6666543 46766653
No 127
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=28.50 E-value=46 Score=39.36 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhH-HHHHHHhhhcCCCCceEEEeCc-h-------
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA-KNLASTVDISSCPDGIICVGGD-G------- 347 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA-~ela~~~~~~~~~D~IVvvGGD-G------- 347 (790)
..+|+.||+.. |.....++ ..+...|+++|+.++++-.+.. +. .....++. ...||+||+.||- |
T Consensus 536 ~grKVaILvad--G~fE~~El--~~p~~aL~~aGa~V~vVsp~~g-~GvD~t~~~~~-s~~fDAVvlPGG~~~~~~~~~~ 609 (688)
T 3ej6_A 536 ATLRVGVLSTT--KGGSLDKA--KALKEQLEKDGLKVTVIAEYLA-SGVDQTYSAAD-ATAFDAVVVAEGAERVFSGKGA 609 (688)
T ss_dssp TTCEEEEECCS--SSSHHHHH--HHHHHHHHHTTCEEEEEESSCC-TTCCEETTTCC-GGGCSEEEECTTCCTTTSTTTT
T ss_pred cCCEEEEEccC--CCccHHHH--HHHHHHHHHCCCEEEEEeCCCC-CCcccCcccCC-hhcCcEEEECCCcccccccccc
Confidence 44789999864 21222233 2466789999999988865443 21 00011111 1248999999993 3
Q ss_pred --------HHHHHHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 348 --------IINEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 348 --------TlnEVlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
-+-++|...+.. ..|||.|-.|-
T Consensus 610 ~d~Lr~~~~a~~fV~e~~~h-------gKpIAAIchgp 640 (688)
T 3ej6_A 610 MSPLFPAGRPSQILTDGYRW-------GKPVAAVGSAK 640 (688)
T ss_dssp CCTTSCTTHHHHHHHHHHHT-------TCCEEEEGGGH
T ss_pred hhhhccCHHHHHHHHHHHHc-------CCEEEEeCccH
Confidence 455666666655 46888886653
No 128
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=28.36 E-value=63 Score=32.42 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCCeEEEEEc----CCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHH
Q 003866 276 KSPPKMLVILN----PRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIIN 350 (790)
Q Consensus 276 ~rpkrllVIIN----P~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTln 350 (790)
++.+.+.||+. |.....-...++ ..++..+++.|+.+.+..+..... ..++.+.+. ...+|+||+++.+.+ .
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdGiI~~~~~~~-~ 81 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVL-LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIK-QRMVDAFILLYSKEN-D 81 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHH-HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHH-TTCCSEEEESCCCTT-C
T ss_pred CCCcEEEEEeecCCcccccChHHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHH-hCCcCEEEEcCcccC-h
Confidence 35567777773 111111112333 457778888898776655443222 233445543 345899999987754 3
Q ss_pred HHHHHHHcCCCCCCCCCccEEEee
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+++..|... .+|+-++-
T Consensus 82 ~~~~~l~~~-------~iPvV~i~ 98 (295)
T 3hcw_A 82 PIKQMLIDE-------SMPFIVIG 98 (295)
T ss_dssp HHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHhC-------CCCEEEEC
Confidence 556666544 47776653
No 129
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=28.33 E-value=1.6e+02 Score=29.15 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCC-CCC-CchhhHHHhHHHHHHHcCCeEEEEEeCCch---------------hHHHHHH---------H
Q 003866 277 SPPKMLVILNPRS-GRG-RSSKVFHDIVEPIFKLAGFKLEVVKTTSAG---------------HAKNLAS---------T 330 (790)
Q Consensus 277 rpkrllVIINP~S-GkG-~a~kv~~~~I~plL~~agi~~~v~~Te~~~---------------hA~ela~---------~ 330 (790)
.++|++||+-..+ ..| ....+. ....+|+.+|++++++-.+... ....+.. .
T Consensus 5 ~m~kv~ill~~~~~~~g~~~~E~~--~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~ 82 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGSEIHEAV--LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRP 82 (232)
T ss_dssp -CCEEEEECCSBSTTTSBCHHHHH--HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEE
T ss_pred cCCeEEEEEccCCCCCCeeHHHHH--HHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCC
Confidence 3578888876211 011 222222 2234788999998877543210 1111111 1
Q ss_pred hhh--cCCCCceEEEeCchHH---------------HH----HHHHHHcCCCCCCCCCccEEEeecCCcchhhhhh
Q 003866 331 VDI--SSCPDGIICVGGDGII---------------NE----VLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTV 385 (790)
Q Consensus 331 ~~~--~~~~D~IVvvGGDGTl---------------nE----VlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArsl 385 (790)
++. ...||+||+.||-|+. ++ .+..+.++ ..+|+-|=.|.. .||+.+
T Consensus 83 l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------gk~vaaIC~G~~-~La~aL 150 (232)
T 1vhq_A 83 LAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQA-------GKPLGFMCIAPA-MLPKIF 150 (232)
T ss_dssp GGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHT-------TCCEEEETTGGG-GHHHHC
T ss_pred HHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHc-------CCEEEEECHHHH-HHHHHh
Confidence 111 1248999999998872 23 33333333 467888888876 566653
No 130
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.21 E-value=90 Score=29.41 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=37.7
Q ss_pred eeeecceeeeccc--------ccCCcceEEEEec--CC--cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHH
Q 003866 162 AKLTSKALVWGSH--------VLPLDDIVSVSYN--NG--LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEE 229 (790)
Q Consensus 162 ~~~~~~~~~~~~~--------~l~l~dv~~~~~~--~~--~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~ 229 (790)
..|....|.|++. .|.|.++..+... .+ ...|+|.. ..++|.|.++|.++
T Consensus 39 FvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t------------------~~r~~~f~A~s~ee 100 (149)
T 1x1f_A 39 TELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVL------------------PKEEVQLKTENTES 100 (149)
T ss_dssp EEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEEC------------------SSCCEEEECSSHHH
T ss_pred EEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEEc------------------CCCEEEEEcCCHHH
Confidence 4456666666643 5777777655321 11 22355541 12468899999999
Q ss_pred HHHHHhhhh
Q 003866 230 AIQWVGGFA 238 (790)
Q Consensus 230 a~~W~~~~~ 238 (790)
.+.|+.+|.
T Consensus 101 ~~eWi~aI~ 109 (149)
T 1x1f_A 101 GEEWRGFIL 109 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999994
No 131
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=28.04 E-value=17 Score=42.87 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeC-ch---------
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG-DG--------- 347 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGG-DG--------- 347 (790)
.+|++||+.+.-|.- ..+ + ..+...|+++|+.++++-.+....+-....+++ ...||+||+.|| .|
T Consensus 529 g~kVaIL~a~~dGfe-~~E-~-~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~-s~~fDAVvlPGG~~g~~~~~~~~~ 604 (688)
T 2iuf_A 529 GLKVGLLASVNKPAS-IAQ-G-AKLQVALSSVGVDVVVVAERXANNVDETYSASD-AVQFDAVVVADGAEGLFGADSFTV 604 (688)
T ss_dssp TCEEEEECCTTCHHH-HHH-H-HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCC-GGGCSEEEECTTCGGGCCTTTTTC
T ss_pred CCEEEEEecCCCCCc-HHH-H-HHHHHHHHHCCCEEEEEeccCCcccccchhcCC-ccccCeEEecCCCccccccccccc
Confidence 478999986433322 112 2 356778999999998876643221111111111 124899999999 33
Q ss_pred ---------------HHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhh
Q 003866 348 ---------------IINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLV 382 (790)
Q Consensus 348 ---------------TlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfA 382 (790)
.+-++|...+.. .-|||.|-.|.. .|+
T Consensus 605 ~~~~~~~~~~L~~~~~~~~~v~~~~~~-------gKpIaAIc~ap~-vL~ 646 (688)
T 2iuf_A 605 EPSAGSGASTLYPAGRPLNILLDAFRF-------GKTVGALGSGSD-ALE 646 (688)
T ss_dssp CCCTTSCCCSSSCTTHHHHHHHHHHHH-------TCEEEEEGGGHH-HHH
T ss_pred ccccccchhhcccChHHHHHHHHHHHc-------CCEEEEECchHH-HHH
Confidence 355666666554 468888887764 444
No 132
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=27.96 E-value=1.3e+02 Score=29.83 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=51.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC---chhHHHHHHHhhhcCCCCceEEEeCchH-HHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPDGIICVGGDGI-INEV 352 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~---~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEV 352 (790)
+..++.||+.-.+.. -...++ .-++..+++.|+++.+..+.. .....++++.+.. ..+|+||+++.|.. +.+.
T Consensus 4 ~~~~Igvi~~~~~~~-~~~~~~-~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~~~ 80 (304)
T 3o1i_D 4 SDEKICAIYPHLKDS-YWLSVN-YGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQ-WGANAIILGTVDPHAYEHN 80 (304)
T ss_dssp -CCEEEEEESCSCSH-HHHHHH-HHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHH-HTCSEEEECCSSTTSSTTT
T ss_pred CCcEEEEEeCCCCCc-HHHHHH-HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhHHHHH
Confidence 556788877643221 112233 456777888899988887764 2233445555533 34899999988765 2344
Q ss_pred HHHHHcCCCCCCCCCccEEEe
Q 003866 353 LNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGII 373 (790)
++.+. . .+|+-.+
T Consensus 81 ~~~~~-~-------~iPvV~~ 93 (304)
T 3o1i_D 81 LKSWV-G-------NTPVFAT 93 (304)
T ss_dssp HHHHT-T-------TSCEEEC
T ss_pred HHHHc-C-------CCCEEEe
Confidence 55554 3 4777666
No 133
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=27.86 E-value=2.3e+02 Score=27.31 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=37.3
Q ss_pred CCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh
Q 003866 276 KSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI 333 (790)
Q Consensus 276 ~rpkrllVIINP~SG-------kG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~ 333 (790)
..++.+.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+.++++..
T Consensus 30 ~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 30 SRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp CSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 466788888876521 1222222235788999999999888766666666666666543
No 134
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=27.57 E-value=34 Score=29.46 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.+++++|+.+|.
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~ 107 (112)
T 3aj4_A 87 KTISLCAESTDDCLAWKFTLQ 107 (112)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 135
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.38 E-value=1.4e+02 Score=29.88 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=42.9
Q ss_pred HhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+-++..+++.|+++.+..+. ......+..+.+.. ..+|+||+.+-|.. +.+.+..+... .+|+-.+-
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~~ 93 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDTAFSKSLQRANKL-------NIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSSTTHHHHHHHHHH-------TCCEEEES
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHHC-------CCCEEEEc
Confidence 45677888889888777655 33333445555543 35899999888755 35556666544 46766653
No 136
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=27.35 E-value=1.5e+02 Score=29.91 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
..+|+.+|.+|... .+...+ +..+..++++|+++.........+..+.++++.. .+|+|++ ..|.+.-.++..|
T Consensus 139 g~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~--~~dai~~-~~D~~a~g~~~~l 212 (302)
T 2qh8_A 139 NVKSIGVVYNPGEA--NAVSLM-ELLKLSAAKHGIKLVEATALKSADVQSATQAIAE--KSDVIYA-LIDNTVASAIEGM 212 (302)
T ss_dssp TCCEEEEEECTTCH--HHHHHH-HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGG--GCSEEEE-CSCHHHHTTHHHH
T ss_pred CCcEEEEEecCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhc--cCCEEEE-CCcHhHHHHHHHH
Confidence 45899999998532 233333 4566788899998876655556667777777642 3676655 6787765555544
Q ss_pred H
Q 003866 357 L 357 (790)
Q Consensus 357 ~ 357 (790)
.
T Consensus 213 ~ 213 (302)
T 2qh8_A 213 I 213 (302)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=27.34 E-value=1.1e+02 Score=30.42 Aligned_cols=87 Identities=6% Similarity=-0.057 Sum_probs=49.0
Q ss_pred CCCeEEEEEcC-CC--CCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHH
Q 003866 277 SPPKMLVILNP-RS--GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (790)
Q Consensus 277 rpkrllVIINP-~S--GkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEV 352 (790)
+.+.+.||+.- .. ...-...++ .-++..+++.|+.+.+..+.. .....++.+.+.. ..+|+||+++.+.+ .+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~~~ 79 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFL-SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS-GNVDGFVLSSINYN-DPR 79 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHH-HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT-TCCSEEEECSCCTT-CHH
T ss_pred ceeEEEEEecccccccCChhHHHHH-HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc-CCCCEEEEeecCCC-cHH
Confidence 34566666643 21 111222333 467778888898776654432 2223445555543 45899999987654 255
Q ss_pred HHHHHcCCCCCCCCCccEEEe
Q 003866 353 LNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGII 373 (790)
+..|... .+|+-.+
T Consensus 80 ~~~l~~~-------~iPvV~~ 93 (287)
T 3bbl_A 80 VQFLLKQ-------KFPFVAF 93 (287)
T ss_dssp HHHHHHT-------TCCEEEE
T ss_pred HHHHHhc-------CCCEEEE
Confidence 6666543 4676665
No 138
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.77 E-value=44 Score=28.75 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.++|.|.++|.+++++|+++|.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~ 97 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLL 97 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHH
Confidence 3579999999999999999995
No 139
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=26.34 E-value=1e+02 Score=29.36 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=29.5
Q ss_pred HhHHHHHHHcCCeEEEEEe--CCchhHHHHHHHhhhcCCCCceEEEeCch
Q 003866 300 DIVEPIFKLAGFKLEVVKT--TSAGHAKNLASTVDISSCPDGIICVGGDG 347 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~T--e~~~hA~ela~~~~~~~~~D~IVvvGGDG 347 (790)
..+..+|++.|+++..+.+ +..+...+..+++.....+|.||..||=|
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 3577899999998654333 33333333333332223479999999966
No 140
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=26.18 E-value=53 Score=37.25 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=35.4
Q ss_pred HHHHHhhhcCCCCceEEEeCchHHHHHH---HHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 326 NLASTVDISSCPDGIICVGGDGIINEVL---NGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 326 ela~~~~~~~~~D~IVvvGGDGTlnEVl---NGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
++++.+... +.|.+|++|||||+.-+. ..+.++ ..++++--||.==-||+.-+
T Consensus 180 ~i~~~l~~~-~Id~LvvIGGdgS~~~A~~L~e~~~~~-----g~~i~vVGIPkTIDNDl~gT 235 (487)
T 2hig_A 180 EMVDTLERL-GVNILFTVGGDGTQRGALVISQEAKRR-----GVDISVFGVPKTIDNDLSFS 235 (487)
T ss_dssp HHHHHHHHH-TCSEEEEEECHHHHHHHHHHHHHHHHH-----TCCCEEEEEECCTTSSCCCS
T ss_pred HHHHHHHHc-CCCEEEEeCCCchHHHHHHHHHHHHHh-----CCCceEEeccccccCCCCCC
Confidence 344444322 479999999999987432 222222 23588999999888999743
No 141
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=26.12 E-value=44 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++.++|+.+|.
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~ 89 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALG 89 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999994
No 142
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=25.74 E-value=81 Score=28.43 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=47.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCC-CCceEEE-----eCc----hH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSC-PDGIICV-----GGD----GI 348 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~-~D~IVvv-----GGD----GT 348 (790)
++++||+= |..|...++. +.+...|...|++++++....... .++ .. +|.||++ .|+ +.
T Consensus 1 mki~iiy~--S~~Gnt~~~a-~~i~~~l~~~g~~v~~~~~~~~~~-----~~l---~~~~d~ii~~~p~y~~g~~~~p~~ 69 (147)
T 1f4p_A 1 PKALIVYG--STTGNTEYTA-ETIARELADAGYEVDSRDAASVEA-----GGL---FEGFDLVLLGCSTWGDDSIELQDD 69 (147)
T ss_dssp CEEEEEEE--CSSSHHHHHH-HHHHHHHHHHTCEEEEEEGGGCCS-----TTT---TTTCSEEEEEECEECSSSCEECTT
T ss_pred CeEEEEEE--CCcCHHHHHH-HHHHHHHHhcCCeeEEEehhhCCH-----HHh---cCcCCEEEEEeCCCCCCCcCCChh
Confidence 46777774 3345566655 467778888888887765432110 112 23 6777765 233 34
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEeecCCc
Q 003866 349 INEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 349 lnEVlNGL~~r~d~~~~~~iPLGIIPaGTG 378 (790)
+..++..|.... ....+++++-.|.+
T Consensus 70 ~~~fl~~l~~~~----l~~k~~~v~~~g~~ 95 (147)
T 1f4p_A 70 FIPLFDSLEETG----AQGRKVACFGCGDS 95 (147)
T ss_dssp THHHHHTGGGSC----CTTCEEEEEEEECT
T ss_pred HHHHHHHHHhcc----cCCCEEEEEeecCC
Confidence 555555553311 22456777766544
No 143
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.65 E-value=2.2e+02 Score=28.56 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=41.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCC--chhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTS--AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~--~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+-++..+++.|+++.+..... .....++++.+.. ..+|+||+++.|.. +.+++..+... .+|+-.+-
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~ 89 (313)
T 2h3h_A 20 QGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA-EGVNGIAIAPSDPTAVIPTIKKALEM-------GIPVVTLD 89 (313)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEeC
Confidence 456777888898876654222 2233345555543 35899999988754 34566666544 47776653
No 144
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=25.63 E-value=2.2e+02 Score=28.80 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCCceEEEeCchHHH---------HHHHHHHcCCCCCCCCCccEEEeecCCc
Q 003866 336 CPDGIICVGGDGIIN---------EVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (790)
Q Consensus 336 ~~D~IVvvGGDGTln---------EVlNGL~~r~d~~~~~~iPLGIIPaGTG 378 (790)
.||+|++.||-|... +++...... ..+|+-|=.|..
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~-------gk~iaaIC~G~~ 142 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIYAN-------GGVIAAICHGPL 142 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-------TCEEEEETTGGG
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEECHHHH
Confidence 489999999998742 233333333 467888877763
No 145
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=25.61 E-value=1.5e+02 Score=28.99 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh
Q 003866 275 CKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI 333 (790)
Q Consensus 275 ~~rpkrllVIINP~S-------GkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~ 333 (790)
...++.+.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++..
T Consensus 40 ~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~ 105 (173)
T 2ql9_A 40 NFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASE 105 (173)
T ss_dssp CSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 345667777777541 11122222235788999999999888876666666666666543
No 146
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=25.41 E-value=67 Score=39.44 Aligned_cols=60 Identities=25% Similarity=0.239 Sum_probs=40.1
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+..++++.+... +.|++|++|||||+.- ++.|.+.........+|+--||.==-||+.-+
T Consensus 676 ~~~~i~~~l~~~-~Id~LvvIGGdgS~~~-a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gT 735 (989)
T 3opy_A 676 DMGTVAYYFQQY-KFDGLIIIGGFEAFTA-LYELDAARAQYPIFNIPMCCLPATVSNNVPGT 735 (989)
T ss_dssp GHHHHHHHHHHH-TCSEEEEEESHHHHHH-HHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred hHHHHHHHHHHc-CCCEEEEeCCchHHHH-HHHHHHHHhhCCCcCCcEEeccccccCCCCCC
Confidence 445556555433 4799999999999854 45565421111123688999999889999854
No 147
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=25.15 E-value=2.5e+02 Score=28.87 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=51.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNG 355 (790)
+.+.+.||+.-.. ..-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+- +.+..
T Consensus 69 ~~~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~~~-~~~~~ 144 (355)
T 3e3m_A 69 RSGFVGLLLPSLN-NLHFAQTA-QSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR-RRPEAMVLSYDGHTE-QTIRL 144 (355)
T ss_dssp --CEEEEEESCSB-CHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEEECSCCCH-HHHHH
T ss_pred CCCEEEEEeCCCC-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCCH-HHHHH
Confidence 4556777764322 11122333 4677788889998877766543 333445555533 458999999887663 55666
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
|... .+|+-++
T Consensus 145 l~~~-------~iPvV~i 155 (355)
T 3e3m_A 145 LQRA-------SIPIVEI 155 (355)
T ss_dssp HHHC-------CSCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 6554 4777766
No 148
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=25.13 E-value=92 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=31.6
Q ss_pred hHHHHHHHhhhcCCCCceEEEeCc-hHHHHHHHHHHcCCCCCCCCCccEEEeecC
Q 003866 323 HAKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 323 hA~ela~~~~~~~~~D~IVvvGGD-GTlnEVlNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
.|+++++.+... + -.||.-||. |..-.+..|.++.. ...+||+|.+
T Consensus 21 ~A~~lg~~La~~-g-~~lV~GGg~~GiM~aa~~gA~~~g------G~~iGv~p~~ 67 (191)
T 1t35_A 21 KAAELGVYMAEQ-G-IGLVYGGSRVGLMGTIADAIMENG------GTAIGVMPSG 67 (191)
T ss_dssp HHHHHHHHHHHT-T-CEEEECCCCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHC-C-CEEEECCCcccHHHHHHHHHHHcC------CeEEEEeCch
Confidence 356667776543 2 234444456 99999999988764 4789999986
No 149
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.79 E-value=76 Score=33.72 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=40.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------ch----hHHHHHHHhhhcCCCCceEEE-eCc
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AG----HAKNLASTVDISSCPDGIICV-GGD 346 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~------~~----hA~ela~~~~~~~~~D~IVvv-GGD 346 (790)
+....-||.|.++-. ...+ +.....|+..|+++.+-.+-. ++ .|.++.+.+.. ...|+|+|+ ||+
T Consensus 16 ~Gd~I~ivaPSs~~~--~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D-p~i~aI~~~rGGy 91 (311)
T 1zl0_A 16 IDGRVALIAPASAIA--TDVL-EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDM-PDITAVWCLRGGY 91 (311)
T ss_dssp CCSEEEEECCSBCCC--HHHH-HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHS-TTEEEEEESCCSS
T ss_pred CcCEEEEEeCCCCCC--HHHH-HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhC-CCCCEEEEccCCc
Confidence 344577889988764 3445 455668999998876532221 22 23444444332 335666655 999
Q ss_pred hHH
Q 003866 347 GII 349 (790)
Q Consensus 347 GTl 349 (790)
|+.
T Consensus 92 ga~ 94 (311)
T 1zl0_A 92 GCG 94 (311)
T ss_dssp CGG
T ss_pred CHH
Confidence 975
No 150
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=24.73 E-value=1.3e+02 Score=27.90 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=39.7
Q ss_pred ccCCcceEEEEecCC-cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCHHHHHHHHhhhh
Q 003866 175 VLPLDDIVSVSYNNG-LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 175 ~l~l~dv~~~~~~~~-~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.++..+||+|...+. ..+|-|.-|-.. ....|.|.|++.|.+||..=++.|+
T Consensus 58 S~H~s~Vv~~K~s~k~P~~FKivV~k~~------------~~e~KrYdfEA~s~~ea~EIV~~ik 110 (121)
T 3ulb_A 58 SLHISQVVLVKKSKRVPEHFKIFVRREG------------QDDIKRYYFEAVSGQECTEIVTRLQ 110 (121)
T ss_dssp EEEGGGEEEEEECSSCTTEEEEEECCTT------------CSSCEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEeeEEEEEecccCCCcEEEEEEccC------------CCCcceeEEEeCCHHHHHHHHHHHH
Confidence 456779999998876 667887765421 1235889999999999999988874
No 151
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=24.68 E-value=2.5e+02 Score=27.10 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=39.8
Q ss_pred CCCeEEEEEcCC-------C-CCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCc
Q 003866 277 SPPKMLVILNPR-------S-GRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGD 346 (790)
Q Consensus 277 rpkrllVIINP~-------S-GkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGD 346 (790)
++.++.||.--. . |+-.... -..+..+|++.|+++..+ ..+..+..++..+++.....+|.||+.||=
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn--~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDES--GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHH--HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCEEEEEEeCcccccccccCCeEeehH--HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 566777776432 2 4433222 235778999999876443 334444444444444322137999999984
Q ss_pred h
Q 003866 347 G 347 (790)
Q Consensus 347 G 347 (790)
|
T Consensus 92 s 92 (178)
T 2pjk_A 92 G 92 (178)
T ss_dssp S
T ss_pred C
Confidence 4
No 152
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=24.33 E-value=40 Score=30.13 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.+|++.|+++|.
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~ 120 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIE 120 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 153
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.98 E-value=3.3e+02 Score=27.64 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+.-. ...-...++ .-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+ .+.+.
T Consensus 56 ~~~~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~ 131 (340)
T 1qpz_A 56 NHTKSIGLLATSS-EAAYFAEII-EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYP-EPLLA 131 (340)
T ss_dssp TCCSEEEEEESCS-CSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCC-HHHHH
T ss_pred CCCCEEEEEeCCC-CChHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc-CCCCEEEEeCCCCC-hHHHH
Confidence 3556777777432 211122333 4567778888988877655432 222344555533 45899999987753 23344
Q ss_pred HHHcCCCCCCCCCccEEEee
Q 003866 355 GLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIP 374 (790)
.|... ..+|+-++-
T Consensus 132 ~l~~~------~~iPvV~~~ 145 (340)
T 1qpz_A 132 MLEEY------RHIPMVVMD 145 (340)
T ss_dssp HHHTT------TTSCEEEEE
T ss_pred HHHhh------CCCCEEEEe
Confidence 44321 146766653
No 154
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.85 E-value=1.7e+02 Score=28.88 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=42.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE-EeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV-KTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~-~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
+.+++.||+. .....-...++ ..++..+++.|+++.+. .+.. .....++.+.+.. ..+|+||+++.+.+ .+.+.
T Consensus 7 ~~~~Ig~i~~-~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 7 SSNVIAAVVS-SVRTNFAQQIL-DGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE-RPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp -CCEEEEECC-CCSSSHHHHHH-HHHHHHHHTTTCEEEEEC----------CHHHHHHS-SCCSEEEEESCC-----CHH
T ss_pred cCCEEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCC-HHHHH
Confidence 4556666663 32222122333 45677788889887665 4432 2222344555533 45899999988765 35556
Q ss_pred HHHcCCCCCCCCCccEEEee
Q 003866 355 GLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIP 374 (790)
.|... .+|+-++-
T Consensus 83 ~l~~~-------~iPvV~~~ 95 (290)
T 3clk_A 83 LLQSS-------DVPYCFLS 95 (290)
T ss_dssp HHHCC---------CEEEES
T ss_pred HHHhC-------CCCEEEEc
Confidence 55443 47776653
No 155
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.82 E-value=44 Score=30.06 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.5
Q ss_pred eEEEeecCCHHHHHHHHhhhhc
Q 003866 218 KDYRFLASTTEEAIQWVGGFAD 239 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (790)
++|.|.+++.+++++|+++|..
T Consensus 90 r~~~l~A~s~~e~~~Wi~al~~ 111 (130)
T 2d9v_A 90 SRLHLCAETRDDAIAWKTALME 111 (130)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHH
Confidence 3699999999999999999953
No 156
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=23.77 E-value=84 Score=33.53 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhhh
Q 003866 336 CPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (790)
Q Consensus 336 ~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfArs 384 (790)
+.|.+|++|||||+.- ++.|.+. .+|+--||.==-||+.-+
T Consensus 93 ~Id~L~~IGGdgS~~~-a~~l~~~-------~i~vigiPkTIDNDl~~t 133 (319)
T 4a3s_A 93 GIEGLVVIGGDGSYMG-AKKLTEH-------GFPCVGVPGTIDNDIPGT 133 (319)
T ss_dssp TCCEEEEEECTTHHHH-HHHHHHT-------TCCEEEEEEETTCCCTTC
T ss_pred CCCEEEEeCCcHHHHH-HHHHhcc-------CCcEEEeeccccCCCCCC
Confidence 4799999999999876 4556554 488889999888998753
No 157
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=23.59 E-value=2.6e+02 Score=27.09 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCCCchhhHHHhHHHHHHHcCCeEEEEEeCC---chhHHHHHHHhhhcCCCC-ceEEEeCchHHHHHHHHHHcCCCCCCC
Q 003866 290 GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPD-GIICVGGDGIINEVLNGLLSRGNQKEG 365 (790)
Q Consensus 290 GkG~a~kv~~~~I~plL~~agi~~~v~~Te~---~~hA~ela~~~~~~~~~D-~IVvvGGDGTlnEVlNGL~~r~d~~~~ 365 (790)
|......+. +++...|+..|++|++.+..- ++...++++++. . + .|+++||.+-|--|+-++..
T Consensus 7 gs~SD~~v~-~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~---~-~ViIa~AG~aa~Lpgvva~~t~------- 74 (157)
T 2ywx_A 7 GSESDLKIA-EKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSK---A-DVFIAIAGLAAHLPGVVASLTT------- 74 (157)
T ss_dssp SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCC---C-SEEEEEEESSCCHHHHHHTTCS-------
T ss_pred ccHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcC---C-CEEEEEcCchhhhHHHHHhccC-------
Confidence 333344555 456778999999999887632 345556666543 1 4 56778999999999998843
Q ss_pred CCccEEEeec
Q 003866 366 ISIPIGIIPA 375 (790)
Q Consensus 366 ~~iPLGIIPa 375 (790)
.|+--+|.
T Consensus 75 --~PVIgVP~ 82 (157)
T 2ywx_A 75 --KPVIAVPV 82 (157)
T ss_dssp --SCEEEEEE
T ss_pred --CCEEEecC
Confidence 45555565
No 158
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.57 E-value=2e+02 Score=27.81 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=43.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchh---HHHHHHHhhhcCC-CCceEEEeCch-HHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGH---AKNLASTVDISSC-PDGIICVGGDG-IINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~h---A~ela~~~~~~~~-~D~IVvvGGDG-TlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+-++..+++.|+++.+..+....+ ..+.++.+.. .. +|+||+.+-|. ...+.+..+... .+|+-++-
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~~vdgii~~~~~~~~~~~~~~~~~~~-------~ipvV~~~ 91 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLS-QAPPDALILAPNSAEDLTPSVAQYRAR-------NIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH-HSCCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHH-hCCCCEEEEeCCCHHHHHHHHHHHHHC-------CCcEEEEe
Confidence 467778888998887765432222 2344555433 34 79999999764 456677777655 47777764
Q ss_pred c
Q 003866 375 A 375 (790)
Q Consensus 375 a 375 (790)
.
T Consensus 92 ~ 92 (276)
T 3ksm_A 92 S 92 (276)
T ss_dssp S
T ss_pred c
Confidence 3
No 159
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=23.37 E-value=2e+02 Score=29.43 Aligned_cols=79 Identities=6% Similarity=-0.030 Sum_probs=48.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~--~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
..+++.+|... . ..+.... +.++..|+++|+++... ......+....++++... .+|+|++++-|...-.++.
T Consensus 150 g~~~ia~i~~~-~--~~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~-~~dai~~~~~~~~a~~~~~ 224 (375)
T 4evq_A 150 GLKKAVTVTWK-Y--AAGEEMV-SGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASL-KPDCVYAFFSGGGALKFIK 224 (375)
T ss_dssp TCCEEEEEEES-S--HHHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHH-CCSEEEEECCTHHHHHHHH
T ss_pred CCcEEEEEecC-c--hHHHHHH-HHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhc-CCCEEEEecCcchHHHHHH
Confidence 45788888632 1 1222233 45677889999876322 222223334445544332 4799999899999889999
Q ss_pred HHHcCC
Q 003866 355 GLLSRG 360 (790)
Q Consensus 355 GL~~r~ 360 (790)
.+.+..
T Consensus 225 ~~~~~g 230 (375)
T 4evq_A 225 DYAAAN 230 (375)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 987763
No 160
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=23.28 E-value=98 Score=30.63 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcCCCCceEEEeCc-hHHHHHHHHHHcCCCCCCCCCccEEEeecC
Q 003866 324 AKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 324 A~ela~~~~~~~~~D~IVvvGGD-GTlnEVlNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
|+++.+.++.. + -.||.-||. |..-.+..+..+.. ...+||+|--
T Consensus 33 A~~lg~~la~~-g-~~lv~GGG~~GlM~a~~~ga~~~G------G~viGv~p~~ 78 (189)
T 3sbx_A 33 AGAVGAAIAAR-G-WTLVWGGGHVSAMGAVSSAARAHG------GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHT-T-CEEEECCBCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHC-C-CEEEECCCccCHHHHHHHHHHHcC------CcEEEEcCch
Confidence 45566666542 2 244444567 99999999988764 4789999974
No 161
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=23.07 E-value=1.9e+02 Score=27.92 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE--EEeCCchhHHHHHHHhhhcCCCCceEEEe--CchHH-----
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV--VKTTSAGHAKNLASTVDISSCPDGIICVG--GDGII----- 349 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v--~~Te~~~hA~ela~~~~~~~~~D~IVvvG--GDGTl----- 349 (790)
.|+.|++-.+-. ..+.. -....|.++|...++ +.....-+.--.++.+.....||+||++| |+-.-
T Consensus 3 ~ri~IV~arfn~----~~Ll~-gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va 77 (156)
T 2b99_A 3 KKVGIVDTTFAR----VDMAS-IAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCA 77 (156)
T ss_dssp CEEEEEEESSCS----SCCHH-HHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHH
T ss_pred cEEEEEEEecch----HHHHH-HHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHH
Confidence 467788755544 23343 344577778865443 44445444444556555445689999877 44433
Q ss_pred HHHHHHHHc
Q 003866 350 NEVLNGLLS 358 (790)
Q Consensus 350 nEVlNGL~~ 358 (790)
++|..||++
T Consensus 78 ~~vs~Gl~~ 86 (156)
T 2b99_A 78 HEASLGLML 86 (156)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555543
No 162
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.03 E-value=1.4e+02 Score=29.27 Aligned_cols=88 Identities=16% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCCeEEEEEcCCCC--CCCchhhHHHhHHHHHHHcCCeEEEEEeC---CchhHHHHHHHhhhcCCCCceEEEeCchHH-H
Q 003866 277 SPPKMLVILNPRSG--RGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDGIICVGGDGII-N 350 (790)
Q Consensus 277 rpkrllVIINP~SG--kG~a~kv~~~~I~plL~~agi~~~v~~Te---~~~hA~ela~~~~~~~~~D~IVvvGGDGTl-n 350 (790)
+.+++.||+ |..+ ..-...++ .-++..+++.|+++.+..+. ......++++.+.. ..+|+||+.+.+..- .
T Consensus 4 ~~~~Ig~v~-~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~~ 80 (289)
T 3brs_A 4 KQYYMICIP-KVLDDSSDFWSVLV-EGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK-RKPDVILLAAADYEKTY 80 (289)
T ss_dssp -CCEEEEEC-SCCCSSSHHHHHHH-HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH-TCCSEEEECCSCTTTTH
T ss_pred CCcEEEEEe-CCCCCCchHHHHHH-HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChHHhH
Confidence 445666665 4332 11112233 45667788889887766552 22333445555543 458999999887542 2
Q ss_pred HHHHHHHcCCCCCCCCCccEEEee
Q 003866 351 EVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 351 EVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
+.+..+... .+|+-++-
T Consensus 81 ~~~~~~~~~-------~iPvV~~~ 97 (289)
T 3brs_A 81 DAAKEIKDA-------GIKLIVID 97 (289)
T ss_dssp HHHTTTGGG-------TCEEEEES
T ss_pred HHHHHHHHC-------CCcEEEEC
Confidence 444444322 47776653
No 163
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=22.98 E-value=1.7e+02 Score=28.44 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCC------CCC-chhhHHHhHHHHHHHcCCeEEEEEeCCch------h------H-----HHHHHHhh
Q 003866 277 SPPKMLVILNPRSG------RGR-SSKVFHDIVEPIFKLAGFKLEVVKTTSAG------H------A-----KNLASTVD 332 (790)
Q Consensus 277 rpkrllVIINP~SG------kG~-a~kv~~~~I~plL~~agi~~~v~~Te~~~------h------A-----~ela~~~~ 332 (790)
+++|++||+--... .|- ...+. ....+|+.+|++++++-.+... . . ..+.....
T Consensus 4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~--~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFA--VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTAR 81 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHH--HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEE
T ss_pred CCceEEEEECCcccccCCCCCceeHHHHH--HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCC
Confidence 34788888852211 111 12222 2345788999988877543311 0 1 12211111
Q ss_pred h----cCCCCceEEEeCchHH---------HHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 333 I----SSCPDGIICVGGDGII---------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 333 ~----~~~~D~IVvvGGDGTl---------nEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
. ...+|+||+.||.|.. .+.+..+..+ ..+|+-|=.|.. .||.
T Consensus 82 l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~-------~k~iaaiC~G~~-~La~ 137 (224)
T 1u9c_A 82 LSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAED-------GRIIAAVCHGPS-GLVN 137 (224)
T ss_dssp CCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHT-------TCEEEEETTGGG-GGTT
T ss_pred hHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHC-------CCEEEEEChHHH-HHHH
Confidence 1 1248999999998864 2233333332 457888777765 4554
No 164
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=22.87 E-value=2.3e+02 Score=26.32 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=48.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEE----eCchHHH--HH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICV----GGDGIIN--EV 352 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvv----GGDGTln--EV 352 (790)
++++||+=-. .|...++. +.|...|...|++++++..... +..++..++. .+|.||+. ||+ +- ++
T Consensus 1 Mkv~IvY~S~--tGnT~~~A-~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~~---~~d~ii~Gspty~g~--~p~~~f 71 (161)
T 3hly_A 1 MSVLIGYLSD--YGYSDRLS-QAIGRGLVKTGVAVEMVDLRAV-DPQELIEAVS---SARGIVLGTPPSQPS--EAVATA 71 (161)
T ss_dssp -CEEEEECTT--STTHHHHH-HHHHHHHHHTTCCEEEEETTTC-CHHHHHHHHH---HCSEEEEECCBSSCC--HHHHHH
T ss_pred CEEEEEEECC--ChHHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHH---hCCEEEEEcCCcCCc--hhHHHH
Confidence 3577777444 45666666 4677788888998887765443 3455555543 25777765 444 33 45
Q ss_pred HHHHHcCCCCCCCCCccEEEeec
Q 003866 353 LNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 353 lNGL~~r~d~~~~~~iPLGIIPa 375 (790)
+..|.... ....+++++-.
T Consensus 72 l~~l~~~~----l~gk~v~~fgs 90 (161)
T 3hly_A 72 LSTIFAAA----HNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHC----CTTSEEEEECC
T ss_pred HHHHHhhh----hCCCEEEEEEc
Confidence 55554321 12456777643
No 165
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.75 E-value=1.5e+02 Score=29.72 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=42.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCchh-HHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcCCCCCCCCCccEEEeec
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~h-A~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r~d~~~~~~iPLGIIPa 375 (790)
.-++..+++.|+.+.+..+..... ..++.+.+. ...+|+||+++.+.+ .+.+..|... .+|+-++-.
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~i~~ 114 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQ-SKSVDGFILLYSLKD-DPIEHLLNEF-------KVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHH-TTCCSEEEESSCBTT-CHHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH-hCCCCEEEEeCCcCC-cHHHHHHHHc-------CCCEEEECC
Confidence 456778888898877665544322 234444443 345899999987754 3666666554 477766543
No 166
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=22.71 E-value=43 Score=29.46 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=19.1
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++++.|+++|.
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~ 97 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLC 97 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 469999999999999999994
No 167
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=22.52 E-value=80 Score=33.55 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCCC-CchhhHHHhHHHHHHHcCCeEEEEEeCCc------h----hHHHHHHHhhhcCCCCceEEE-eC
Q 003866 278 PPKMLVILNPRSGRG-RSSKVFHDIVEPIFKLAGFKLEVVKTTSA------G----HAKNLASTVDISSCPDGIICV-GG 345 (790)
Q Consensus 278 pkrllVIINP~SGkG-~a~kv~~~~I~plL~~agi~~~v~~Te~~------~----hA~ela~~~~~~~~~D~IVvv-GG 345 (790)
+.--.-||-|.++-+ .....++ .....|+..|+++.+-.+-.. + .|.++.+.+.. ...++|+|+ ||
T Consensus 11 ~GD~I~ivaPSs~~~~~~~~~~~-~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D-p~i~aI~~~rGG 88 (327)
T 4h1h_A 11 QGDEIRIIAPSRSIGIMADNQVE-IAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFND-SSVKAILTVIGG 88 (327)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHH-HHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHC-TTEEEEEESCCC
T ss_pred CCCEEEEEeCCCCcCccCHHHHH-HHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhC-CCCCEEEEcCCc
Confidence 344567788988743 2334453 445688999987765432221 2 33444444432 346777765 99
Q ss_pred chHHH
Q 003866 346 DGIIN 350 (790)
Q Consensus 346 DGTln 350 (790)
+|+..
T Consensus 89 ~g~~r 93 (327)
T 4h1h_A 89 FNSNQ 93 (327)
T ss_dssp SCGGG
T ss_pred hhHHH
Confidence 99753
No 168
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=22.47 E-value=51 Score=27.80 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.1
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.++..+|+++|.
T Consensus 84 ~~~~~~A~s~~e~~~Wi~ai~ 104 (106)
T 1btn_A 84 NEYLFQAKDDEEMNTWIQAIS 104 (106)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 578999999999999999984
No 169
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=55 Score=28.52 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+.|.+++.+|+.+|.
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~ 97 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLT 97 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHH
Confidence 579999999999999999995
No 170
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.26 E-value=2.2e+02 Score=28.25 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=54.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhc----CCCCceEEEeCchHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDIS----SCPDGIICVGGDGIINE 351 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~----~~~D~IVvvGGDGTlnE 351 (790)
..+++.+|..+..- ......+ +-.+..|+++|+.+.++..... ..+.+.++++... ..+++| ++..|.+.-.
T Consensus 130 G~~~I~~i~~~~~~-~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~A~g 206 (295)
T 3hcw_A 130 GVDELIFITEKGNF-EVSKDRI-QGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAI-ISLDAMLHLA 206 (295)
T ss_dssp CCSEEEEEEESSCC-HHHHHHH-HHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEE-EESSHHHHHH
T ss_pred CCccEEEEcCCccc-hhHHHHH-HHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEE-EECChHHHHH
Confidence 34678888765432 2222334 3456688899998876665443 3445555544221 135555 5688998889
Q ss_pred HHHHHHcCCCCCCCCCcc--EEEeecC
Q 003866 352 VLNGLLSRGNQKEGISIP--IGIIPAG 376 (790)
Q Consensus 352 VlNGL~~r~d~~~~~~iP--LGIIPaG 376 (790)
++++|.+.. ..+| +.|+-.+
T Consensus 207 ~~~al~~~g-----~~vP~di~vig~D 228 (295)
T 3hcw_A 207 ILSVLYELN-----IEIPKDVMTATFN 228 (295)
T ss_dssp HHHHHHHTT-----CCTTTTEEEEEEC
T ss_pred HHHHHHHcC-----CCCCCceEEEEeC
Confidence 999998763 2343 6666544
No 171
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.14 E-value=52 Score=28.32 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.6
Q ss_pred eEEEeecCCHHHHHHHHhhhhc
Q 003866 218 KDYRFLASTTEEAIQWVGGFAD 239 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (790)
++|.|.+++.+++++|+++|..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~ 106 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGE 106 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHH
Confidence 5689999999999999999953
No 172
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=22.06 E-value=47 Score=27.94 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.0
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.++++.|+++|.
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~ 101 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQIS 101 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHH
Confidence 568899999999999999984
No 173
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=21.83 E-value=1.7e+02 Score=27.78 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.9
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.++|.+|.++|+.+|.
T Consensus 108 rt~yl~A~s~~E~~eWi~aI~ 128 (169)
T 1btk_A 108 GPLYVFSPTEELRKRWIHQLK 128 (169)
T ss_dssp CCEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHH
Confidence 478899999999999999995
No 174
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=21.81 E-value=2e+02 Score=29.31 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc--CCCCc-eEEE-
Q 003866 275 CKSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDG-IICV- 343 (790)
Q Consensus 275 ~~rpkrllVIINP~SG-------kG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~--~~~D~-IVvv- 343 (790)
...++++.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+.++++... ..+|. ||++
T Consensus 12 ~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~l 91 (250)
T 2j32_A 12 DYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLL 91 (250)
T ss_dssp CSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEE
T ss_pred CCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEC
Confidence 3456777777765311 11121111257888999999999887766666666666666432 12343 3333
Q ss_pred --eC-------ch--HHHHHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 344 --GG-------DG--IINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 344 --GG-------DG--TlnEVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
|. || -|.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 92 sHG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~ 142 (250)
T 2j32_A 92 SHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDC 142 (250)
T ss_dssp SCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBC
T ss_pred CCCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccC
Confidence 22 33 344454444221111112356688888877777754
No 175
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.59 E-value=4.7e+02 Score=26.71 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=37.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--hhHHHHHHHhhhcCCCCceEEEeC
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGG 345 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~--~hA~ela~~~~~~~~~D~IVvvGG 345 (790)
+...+.||+.-. ...-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.
T Consensus 60 ~~~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~-~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVATSSL-ALHAPSQIV-AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLA-QRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEESCT-TSHHHHHHH-HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHT-TTCSCEEEESC
T ss_pred CCCEEEEEeCCC-CcccHHHHH-HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHH-CCCCEEEEecC
Confidence 455677776422 211112333 4567788889998877766543 223345555533 45899999854
No 176
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=21.58 E-value=1.2e+02 Score=29.66 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCCCceEEEeC-chHHHHHHHHHHcCCCCCCCCCccEEEeecC
Q 003866 324 AKNLASTVDISSCPDGIICVGG-DGIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (790)
Q Consensus 324 A~ela~~~~~~~~~D~IVvvGG-DGTlnEVlNGL~~r~d~~~~~~iPLGIIPaG 376 (790)
|+++++.+... + -.||.-|| -|..-.+..+.++.. ...+||||..
T Consensus 34 A~~lg~~La~~-g-~~lVsGGg~~Gim~aa~~gAl~~g------G~tigVlP~~ 79 (176)
T 2iz6_A 34 ANELGKQIATH-G-WILLTGGRSLGVMHEAMKGAKEAG------GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHT-T-CEEEEECSSSSHHHHHHHHHHHTT------CCEEEEECC-
T ss_pred HHHHHHHHHHC-C-CEEEECCCccCHhHHHHHHHHHcC------CEEEEEeCch
Confidence 45566666543 2 35666677 799999999988764 4789999976
No 177
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=21.45 E-value=1.3e+02 Score=29.80 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=39.9
Q ss_pred eeeecceeeeccc--------ccCCcceEEEEec----CC--cceEEEEEeecCCCCCccccccCCeeeeeEEEeecCCH
Q 003866 162 AKLTSKALVWGSH--------VLPLDDIVSVSYN----NG--LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (790)
Q Consensus 162 ~~~~~~~~~~~~~--------~l~l~dv~~~~~~----~~--~~~~~i~~y~~~k~~~g~~~~~k~~r~~~~~~f~~~~~ 227 (790)
..|+...|.|++. .|.|.++..+... .+ ...|.|.. | ..++|.|.+.+.
T Consensus 131 fVL~~~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t-~----------------~~r~~~l~A~s~ 193 (211)
T 1u5e_A 131 CALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA-P----------------DKRIYQFTAASP 193 (211)
T ss_dssp EEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEEC-S----------------SSCEEEEECSSH
T ss_pred EEEECCEEEEEcCCCCccceEEEEeCCcEEEEcCCccccCCCCCEEEEEc-C----------------CCCEEEEEcCCH
Confidence 3456666766643 6777777776632 11 23466652 1 125799999999
Q ss_pred HHHHHHHhhhh
Q 003866 228 EEAIQWVGGFA 238 (790)
Q Consensus 228 ~~a~~W~~~~~ 238 (790)
+++.+|+.+|.
T Consensus 194 ~e~~~Wi~aL~ 204 (211)
T 1u5e_A 194 KDAEEWVQQLK 204 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 178
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=21.38 E-value=93 Score=32.38 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHHHcC
Q 003866 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (790)
Q Consensus 280 rllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL~~r 359 (790)
++.||.-+ +.. .+ +.++...+... .++++ .+..+..++.+. .|.+|+.|| +|+.|++-.
T Consensus 185 ~i~vv~G~----~~~--~~-~~l~~~~~~~~-~v~v~--~~~~~m~~~m~~------aDlvI~~gG-~T~~E~~~~---- 243 (282)
T 3hbm_A 185 IISIATSS----SNP--NL-KKLQKFAKLHN-NIRLF--IDHENIAKLMNE------SNKLIISAS-SLVNEALLL---- 243 (282)
T ss_dssp CEEEEECT----TCT--TH-HHHHHHHHTCS-SEEEE--ESCSCHHHHHHT------EEEEEEESS-HHHHHHHHT----
T ss_pred CEEEEECC----Cch--HH-HHHHHHHhhCC-CEEEE--eCHHHHHHHHHH------CCEEEECCc-HHHHHHHHc----
Confidence 46676633 322 12 34444444332 44443 344444444443 489999999 999998742
Q ss_pred CCCCCCCCccEEEeec
Q 003866 360 GNQKEGISIPIGIIPA 375 (790)
Q Consensus 360 ~d~~~~~~iPLGIIPa 375 (790)
.+|.-+||.
T Consensus 244 -------g~P~i~ip~ 252 (282)
T 3hbm_A 244 -------KANFKAICY 252 (282)
T ss_dssp -------TCCEEEECC
T ss_pred -------CCCEEEEeC
Confidence 578888885
No 179
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.20 E-value=1.1e+02 Score=30.33 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=49.9
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-chhHHHHHHHhhhcCCCCceEEEeCchHHHHHHH
Q 003866 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (790)
Q Consensus 276 ~rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~-~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlN 354 (790)
++.+.+.||+.......-...++ ..++..+++.|+.+.+..+.. .....++.+.+. ...+|+||+++-+..-.+++.
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~ 86 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFL-RGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISK-ENSFDAAIIANISNYDLEYLN 86 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHH-HHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGST-TTCCSEEEESSCCHHHHHHHH
T ss_pred CCCceEEEEeccccchHHHHHHH-HHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHh-ccCCCEEEEecCCcccHHHHH
Confidence 35677888886222222223344 467778888999887765543 222233444443 345899999998766533332
Q ss_pred HHHcCCCCCCCCCccEEEee
Q 003866 355 GLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 355 GL~~r~d~~~~~~iPLGIIP 374 (790)
+.. ..+|+-++-
T Consensus 87 -~~~-------~~iPvV~~~ 98 (289)
T 3g85_A 87 -KAS-------LTLPIILFN 98 (289)
T ss_dssp -HCC-------CSSCEEEES
T ss_pred -hcc-------CCCCEEEEC
Confidence 222 247776653
No 180
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.05 E-value=55 Score=28.81 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+.|.++.+.|+.+|.
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~ 113 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVN 113 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999994
No 181
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.02 E-value=3.3e+02 Score=26.82 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=45.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eC-CchhHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHH
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TT-SAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNG 355 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~-Te-~~~hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNG 355 (790)
.++.|++ |..+..-...++ +-++..+++.|+++.++. +. .+....+.++.+.. ..+|+||+.+.|.. +.+++..
T Consensus 5 ~~Ig~i~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~~~~ 81 (303)
T 3d02_A 5 KTVVNIS-KVDGMPWFNRMG-EGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIA-RKVDAITIVPNDANVLEPVFKK 81 (303)
T ss_dssp EEEEEEC-SCSSCHHHHHHH-HHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSCHHHHHHHHHH
T ss_pred eEEEEEe-ccCCChHHHHHH-HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHHHHHH
Confidence 3444444 544322222333 456677788887665433 22 22223344555533 35899999988764 3455666
Q ss_pred HHcCCCCCCCCCccEEEe
Q 003866 356 LLSRGNQKEGISIPIGII 373 (790)
Q Consensus 356 L~~r~d~~~~~~iPLGII 373 (790)
+... ++|+-.+
T Consensus 82 ~~~~-------~ipvV~~ 92 (303)
T 3d02_A 82 ARDA-------GIVVLTN 92 (303)
T ss_dssp HHHT-------TCEEEEE
T ss_pred HHHC-------CCeEEEE
Confidence 6543 4676665
No 182
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=20.99 E-value=55 Score=27.73 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.9
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.+++++|+.+|.
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~ 105 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQ 105 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 468999999999999999984
No 183
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=20.97 E-value=2.7e+02 Score=27.21 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=39.5
Q ss_pred HhHHHHHHHcCCeEEEEEeCCch-hHHHHHHHhhhcCCCCceEEEeCchH-HHHHHHHHHcCCCCCCCCCccEEEe
Q 003866 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (790)
Q Consensus 300 ~~I~plL~~agi~~~v~~Te~~~-hA~ela~~~~~~~~~D~IVvvGGDGT-lnEVlNGL~~r~d~~~~~~iPLGII 373 (790)
..++..+++.|+++.+..+.... ...++.+.+. ...+|+||+.+.|.. +.+.+..+... .+|+-++
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~i 88 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT-VRGTKILLINPTDSDAVGNAVKMANQA-------NIPVITL 88 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHT-TTTEEEEEECCSSTTTTHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHHHHHHHHC-------CCcEEEe
Confidence 45677788889887766554322 2233445543 345799999887643 23455655543 4677666
No 184
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=20.94 E-value=1.4e+02 Score=28.98 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCch-------h-----HHHHHHHhhhcCCCCceEEEeC
Q 003866 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-------H-----AKNLASTVDISSCPDGIICVGG 345 (790)
Q Consensus 278 pkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~-------h-----A~ela~~~~~~~~~D~IVvvGG 345 (790)
+++++||+-|.. ....+. .....|+.+|++++++-.+... + +.....++.. ..+|.||+.||
T Consensus 2 ~~kV~ill~~g~---~~~e~~--~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~-~~~D~livpGG 75 (205)
T 2ab0_A 2 SASALVCLAPGS---EETEAV--TTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD-GEYDVIVLPGG 75 (205)
T ss_dssp CCEEEEEECTTC---CHHHHH--HHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-SCCSEEEECCC
T ss_pred CcEEEEEEcCCC---cHHHHH--HHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCc-ccCCEEEECCC
Confidence 468899988633 222222 2345789999988876543320 0 0001122222 24899999999
Q ss_pred chHHH---------HHHHHHHcCCCCCCCCCccEEEeecCCcchhhh
Q 003866 346 DGIIN---------EVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (790)
Q Consensus 346 DGTln---------EVlNGL~~r~d~~~~~~iPLGIIPaGTGNdfAr 383 (790)
.+... +.+.....+ ..+++-|=.|.+-.||.
T Consensus 76 ~~~~~~l~~~~~l~~~l~~~~~~-------gk~i~aiC~G~~~lLa~ 115 (205)
T 2ab0_A 76 IKGAECFRDSTLLVETVKQFHRS-------GRIVAAICAAPATVLVP 115 (205)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHT-------TCEEEEETHHHHHHTTT
T ss_pred cccHHHhccCHHHHHHHHHHHHc-------CCEEEEECHhHHHHHHH
Confidence 75322 122222222 46788887777556664
No 185
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.78 E-value=50 Score=29.10 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=19.6
Q ss_pred eEEEeecCCHHHHHHHHhhhhc
Q 003866 218 KDYRFLASTTEEAIQWVGGFAD 239 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (790)
++|.|.+++.+++++|+++|..
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~ 101 (119)
T 2dhk_A 80 RVITLKAATKQAMLYWLQQLQM 101 (119)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHH
Confidence 5689999999999999999953
No 186
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.78 E-value=63 Score=27.78 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+.+.+++++|+++|.
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~ 97 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDIN 97 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 578899999999999999995
No 187
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.71 E-value=58 Score=29.21 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+++.+++++|+.+|.
T Consensus 82 ~~y~f~A~s~e~~~~Wl~al~ 102 (112)
T 2coc_A 82 QSWYLSASSAELQQQWLETLS 102 (112)
T ss_dssp EEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHH
Confidence 469999999999999999984
No 188
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=20.70 E-value=1.7e+02 Score=28.20 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhc-----CCCCceEEEe----Cch--
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS-----SCPDGIICVG----GDG-- 347 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~-----~~~D~IVvvG----GDG-- 347 (790)
.|+.|+.-..--. -..+.+ +-....|.++|.+++++.....-+.--.++.+... +.||+||++| |+-
T Consensus 13 ~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~H 90 (157)
T 2i0f_A 13 PHLLIVEARFYDD-LADALL-DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYH 90 (157)
T ss_dssp CEEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSST
T ss_pred cEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchH
Confidence 5788887544321 111333 23445677888788888877776665556665544 5689999998 443
Q ss_pred ---HHHHHHHHHHcCCCCCCCCCccEEEeecCC
Q 003866 348 ---IINEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (790)
Q Consensus 348 ---TlnEVlNGL~~r~d~~~~~~iPLGIIPaGT 377 (790)
.-++|..||++-.- +....+-.|||-..|
T Consensus 91 fd~Va~~v~~gl~~vsl-~~~vPV~~GVLT~~~ 122 (157)
T 2i0f_A 91 FDIVSNESCRALTDLSV-EESIAIGNGILTVEN 122 (157)
T ss_dssp THHHHHHHHHHHHHHHH-HTTCCEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHh-hcCCCEEEEEeCCCC
Confidence 35677778865311 112345567776654
No 189
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=20.58 E-value=67 Score=28.20 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred eeEEEeecCCHHHHHHHHhhhh
Q 003866 217 RKDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (790)
.++|.|.+.+.+++.+|+.+|.
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~ 106 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQ 106 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHH
Confidence 4678899999999999999995
No 190
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.56 E-value=2.1e+02 Score=29.16 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhhcCCCCceEEEeCchHHHHHHHHH
Q 003866 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (790)
Q Consensus 277 rpkrllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~~~~~D~IVvvGGDGTlnEVlNGL 356 (790)
..+++.||+||..... ....+.++..+...|+++.........+..+.++.+.. ..|+| .+..|+++...+..+
T Consensus 139 ~~k~vgvi~~~~~~~s---~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~--~~d~i-~~~~d~~~~~~~~~i 212 (302)
T 3lkv_A 139 NVKSIGVVYNPGEANA---VSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE--KSDVI-YALIDNTVASAIEGM 212 (302)
T ss_dssp TCCEEEEEECTTCHHH---HHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHT--TCSEE-EECSCHHHHHTHHHH
T ss_pred CCCEEEEEeCCCcccH---HHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccC--CeeEE-EEeCCcchhhHHHHH
Confidence 5689999999864322 12235677788889998877777777777777766642 35555 456798887766665
Q ss_pred Hc
Q 003866 357 LS 358 (790)
Q Consensus 357 ~~ 358 (790)
..
T Consensus 213 ~~ 214 (302)
T 3lkv_A 213 IV 214 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 191
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=20.55 E-value=2.7e+02 Score=26.78 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-hhHHHHHHHhhhcCCCCceEEEeCch
Q 003866 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDG 347 (790)
Q Consensus 279 krllVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~-~hA~ela~~~~~~~~~D~IVvvGGDG 347 (790)
+.+.||+.-.. ..-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.
T Consensus 3 ~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~ 69 (255)
T 1byk_A 3 KVVAIIVTRLD-SLSENLAV-QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTG 69 (255)
T ss_dssp CEEEEEESCTT-CHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHT-TTCCEEEEECCTT
T ss_pred CEEEEEeCCCC-CccHHHHH-HHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHh-cCCCEEEEecCcc
Confidence 45667764322 11112333 4567788888998877766432 223345555533 4589999998653
No 192
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=20.39 E-value=1.8e+02 Score=29.82 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=36.2
Q ss_pred CCCCCeEEEEEcCCCC--------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHHHHhhh
Q 003866 275 CKSPPKMLVILNPRSG--------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI 333 (790)
Q Consensus 275 ~~rpkrllVIINP~SG--------kG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela~~~~~ 333 (790)
..+++++.+|||-..= .|.. .-. +.++.+|+..|++++++.=-...+..+.++++..
T Consensus 16 ~~~~rg~aLIInn~~f~~~~l~~R~G~~-~D~-~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 80 (259)
T 3sir_A 16 RHKNRGMALIFNHEHFEVPTLKSRAGTN-VDC-ENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSAS 80 (259)
T ss_dssp CSSEEEEEEEEEECCC-----------C-CHH-HHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHT
T ss_pred CCCCccEEEEEeccccCCCCCCCCCCcH-HHH-HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 3456777777765310 1111 122 4688899999999988876666777777776653
No 193
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.31 E-value=1.1e+02 Score=30.69 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCCCceEEEeCc-hHHHHHHHHHHcCCCCCCCCCccEEEee
Q 003866 324 AKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGIIP 374 (790)
Q Consensus 324 A~ela~~~~~~~~~D~IVvvGGD-GTlnEVlNGL~~r~d~~~~~~iPLGIIP 374 (790)
|+++++.+... + -.||.-||. |..-.+..|.++.. ...+||+|
T Consensus 30 A~~lg~~LA~~-g-~~lV~GGg~~GlM~aa~~gA~~~G------G~~iGv~p 73 (216)
T 1ydh_A 30 AIELGNELVKR-K-IDLVYGGGSVGLMGLISRRVYEGG------LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHT-T-CEEEECCCSSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred HHHHHHHHHHC-C-CEEEECCCcccHhHHHHHHHHHcC------CcEEEEec
Confidence 44566666543 2 356666677 88888888988764 47899999
No 194
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.10 E-value=51 Score=28.96 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=19.3
Q ss_pred eEEEeecCCHHHHHHHHhhhh
Q 003866 218 KDYRFLASTTEEAIQWVGGFA 238 (790)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (790)
++|.|.+.+.+++++|+++|.
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~ 100 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQ 100 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999995
No 195
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=20.06 E-value=2.7e+02 Score=26.85 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCchhHHHHH
Q 003866 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLA 328 (790)
Q Consensus 281 llVIINP~SGkG~a~kv~~~~I~plL~~agi~~~v~~Te~~~hA~ela 328 (790)
++.|.|+++|-|+..-. ..+...|.+.| ++-++-.+..+.+..+.
T Consensus 2 vI~v~s~KGGvGKTT~a--~~LA~~la~~g-~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTA--VHLSAYLALQG-ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHHHH--HHHHHHHHTTS-CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHHHH--HHHHHHHHhcC-CEEEEECCCCCCHHHHh
Confidence 57788999999987533 35677888889 99998888877666543
Done!